Query 011465
Match_columns 485
No_of_seqs 458 out of 4256
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 5.2E-87 1.1E-91 587.8 18.0 284 178-468 3-287 (303)
2 KOG0376 Serine-threonine phosp 100.0 2E-80 4.3E-85 601.5 24.7 470 14-483 4-475 (476)
3 cd07417 MPP_PP5_C PP5, C-termi 100.0 5.8E-79 1.3E-83 588.4 30.2 314 164-478 2-316 (316)
4 KOG0373 Serine/threonine speci 100.0 1.6E-79 3.4E-84 531.5 16.8 287 177-470 5-293 (306)
5 cd07420 MPP_RdgC Drosophila me 100.0 3.6E-76 7.8E-81 566.8 30.2 289 173-464 2-321 (321)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 3E-73 6.4E-78 542.4 28.4 283 178-467 2-285 (285)
7 KOG0375 Serine-threonine phosp 100.0 4E-75 8.7E-80 537.2 14.3 294 178-484 48-355 (517)
8 PTZ00480 serine/threonine-prot 100.0 1E-72 2.2E-77 541.8 29.3 273 190-469 31-304 (320)
9 PTZ00239 serine/threonine prot 100.0 1.8E-72 3.9E-77 539.4 28.8 285 178-469 3-289 (303)
10 cd07416 MPP_PP2B PP2B, metallo 100.0 3.2E-72 6.9E-77 541.1 29.4 288 178-473 3-304 (305)
11 cd07418 MPP_PP7 PP7, metalloph 100.0 2.3E-71 4.9E-76 540.3 31.7 302 173-474 7-375 (377)
12 KOG0374 Serine/threonine speci 100.0 2.7E-72 5.9E-77 540.4 23.9 269 191-466 32-303 (331)
13 PTZ00244 serine/threonine-prot 100.0 2.7E-71 5.8E-76 529.8 27.8 269 190-465 24-293 (294)
14 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 4E-71 8.7E-76 529.8 27.2 269 190-465 22-291 (293)
15 smart00156 PP2Ac Protein phosp 100.0 1.6E-69 3.5E-74 515.5 27.9 267 192-465 2-269 (271)
16 KOG0371 Serine/threonine prote 100.0 6.9E-70 1.5E-74 482.6 12.7 287 177-470 19-306 (319)
17 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.7E-66 3.6E-71 504.0 27.3 270 190-465 20-311 (311)
18 KOG0377 Protein serine/threoni 100.0 1.6E-67 3.5E-72 498.0 16.4 315 155-473 99-439 (631)
19 cd00144 MPP_PPP_family phospho 100.0 1E-33 2.2E-38 266.0 21.2 213 225-450 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 9.2E-25 2E-29 201.0 15.2 176 225-435 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 1.5E-23 3.3E-28 198.2 15.8 117 223-342 2-142 (245)
22 cd07413 MPP_PA3087 Pseudomonas 99.9 6.4E-22 1.4E-26 184.2 14.8 115 225-342 2-142 (222)
23 cd07422 MPP_ApaH Escherichia c 99.9 1.1E-22 2.4E-27 191.5 9.0 125 224-354 1-131 (257)
24 PRK00166 apaH diadenosine tetr 99.9 1.2E-21 2.6E-26 186.5 13.2 212 223-451 2-258 (275)
25 cd07423 MPP_PrpE Bacillus subt 99.9 4.4E-21 9.6E-26 180.6 16.3 118 223-343 2-140 (234)
26 PRK11439 pphA serine/threonine 99.9 4.2E-21 9E-26 178.6 13.5 185 215-438 10-208 (218)
27 TIGR00668 apaH bis(5'-nucleosy 99.9 1.5E-21 3.2E-26 183.5 10.3 120 223-347 2-127 (279)
28 cd07424 MPP_PrpA_PrpB PrpA and 99.9 1.1E-20 2.3E-25 174.8 15.6 168 223-421 2-183 (207)
29 cd07421 MPP_Rhilphs Rhilph pho 99.8 3.6E-20 7.9E-25 173.9 14.3 75 223-297 3-83 (304)
30 PHA02239 putative protein phos 99.8 4.9E-20 1.1E-24 172.0 11.6 172 223-436 2-219 (235)
31 PRK09968 serine/threonine-spec 99.8 5E-19 1.1E-23 164.3 12.3 124 215-344 8-145 (218)
32 KOG4626 O-linked N-acetylgluco 99.7 3.3E-18 7.2E-23 170.4 6.8 171 8-192 246-418 (966)
33 KOG0553 TPR repeat-containing 99.7 8.1E-17 1.8E-21 149.3 13.6 123 9-131 76-198 (304)
34 KOG4626 O-linked N-acetylgluco 99.7 2E-16 4.2E-21 157.9 10.3 122 10-131 282-403 (966)
35 PRK15359 type III secretion sy 99.6 6.5E-15 1.4E-19 127.9 16.3 116 15-130 25-140 (144)
36 KOG1126 DNA-binding cell divis 99.6 2.1E-15 4.6E-20 152.6 7.5 150 7-170 414-563 (638)
37 PRK15363 pathogenicity island 99.5 4.8E-13 1E-17 114.6 16.3 107 11-117 32-138 (157)
38 TIGR00990 3a0801s09 mitochondr 99.5 2.4E-13 5.2E-18 146.5 17.8 154 10-165 327-502 (615)
39 TIGR00990 3a0801s09 mitochondr 99.5 1.1E-13 2.4E-18 149.1 15.0 144 10-167 287-436 (615)
40 COG3063 PilF Tfp pilus assembl 99.5 6.6E-13 1.4E-17 118.9 16.2 147 10-170 31-179 (250)
41 PLN03088 SGT1, suppressor of 99.5 7.3E-13 1.6E-17 132.4 17.1 116 16-131 4-119 (356)
42 TIGR02552 LcrH_SycD type III s 99.5 1.4E-12 3.1E-17 111.9 16.4 118 8-125 11-128 (135)
43 PRK11189 lipoprotein NlpI; Pro 99.5 1.3E-12 2.8E-17 127.7 17.1 132 8-142 58-189 (296)
44 KOG0547 Translocase of outer m 99.5 1.3E-12 2.9E-17 127.9 14.6 141 11-165 357-497 (606)
45 PRK15359 type III secretion sy 99.4 3.3E-13 7E-18 117.2 9.3 117 34-167 13-129 (144)
46 PRK10370 formate-dependent nit 99.4 2.6E-12 5.7E-17 117.5 15.6 111 9-119 68-181 (198)
47 KOG0547 Translocase of outer m 99.4 4.6E-13 9.9E-18 131.0 9.4 174 7-193 387-568 (606)
48 KOG0548 Molecular co-chaperone 99.4 2.3E-12 5E-17 127.9 14.1 121 9-129 353-473 (539)
49 KOG1155 Anaphase-promoting com 99.4 7.3E-13 1.6E-17 128.9 9.5 126 15-142 331-456 (559)
50 PRK10370 formate-dependent nit 99.4 3.9E-12 8.4E-17 116.4 13.3 122 27-162 52-176 (198)
51 KOG1155 Anaphase-promoting com 99.4 4.6E-12 1E-16 123.4 14.3 132 9-142 359-490 (559)
52 PRK09782 bacteriophage N4 rece 99.4 5.3E-12 1.1E-16 140.1 16.9 165 14-193 576-742 (987)
53 PRK12370 invasion protein regu 99.4 4.3E-12 9.3E-17 134.8 14.6 132 9-142 290-430 (553)
54 PRK12370 invasion protein regu 99.4 6.7E-12 1.5E-16 133.3 15.6 132 9-142 333-465 (553)
55 KOG1125 TPR repeat-containing 99.4 1.1E-11 2.3E-16 124.2 15.1 165 8-186 313-522 (579)
56 TIGR02521 type_IV_pilW type IV 99.4 2.2E-11 4.8E-16 113.3 16.4 134 7-142 24-159 (234)
57 PRK15179 Vi polysaccharide bio 99.3 1.1E-11 2.4E-16 132.6 14.8 132 9-142 81-212 (694)
58 KOG1126 DNA-binding cell divis 99.3 9.4E-12 2E-16 126.5 12.5 122 10-131 485-606 (638)
59 PRK15174 Vi polysaccharide exp 99.3 1.7E-11 3.7E-16 132.4 14.5 133 17-163 215-351 (656)
60 PRK15174 Vi polysaccharide exp 99.3 3E-11 6.5E-16 130.5 16.3 142 10-165 242-387 (656)
61 COG3063 PilF Tfp pilus assembl 99.3 2.1E-11 4.5E-16 109.4 12.4 132 8-142 63-197 (250)
62 KOG0624 dsRNA-activated protei 99.3 6.4E-11 1.4E-15 111.5 15.6 118 8-125 32-152 (504)
63 TIGR02521 type_IV_pilW type IV 99.3 6.2E-11 1.4E-15 110.3 15.6 131 10-142 61-193 (234)
64 KOG0543 FKBP-type peptidyl-pro 99.3 7.3E-11 1.6E-15 114.4 16.0 123 10-132 204-341 (397)
65 PF13429 TPR_15: Tetratricopep 99.3 1.7E-11 3.7E-16 119.0 11.6 131 10-142 142-272 (280)
66 TIGR03302 OM_YfiO outer membra 99.3 5.7E-11 1.2E-15 112.2 14.4 154 9-162 28-198 (235)
67 TIGR02552 LcrH_SycD type III s 99.3 2.7E-11 5.8E-16 103.9 11.0 115 35-163 4-118 (135)
68 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.4E-10 2.9E-15 96.8 14.4 106 14-119 2-113 (119)
69 PRK09782 bacteriophage N4 rece 99.3 7.7E-11 1.7E-15 130.9 16.5 130 10-142 606-735 (987)
70 PLN02789 farnesyltranstransfer 99.2 1.3E-10 2.8E-15 113.9 15.0 148 9-168 66-221 (320)
71 KOG4234 TPR repeat-containing 99.2 1.4E-10 3.1E-15 101.5 12.6 120 11-130 92-216 (271)
72 PRK02603 photosystem I assembl 99.2 4.1E-10 8.9E-15 101.0 15.4 111 5-115 26-153 (172)
73 KOG1125 TPR repeat-containing 99.2 6.3E-11 1.4E-15 118.8 10.4 121 12-132 428-558 (579)
74 PRK11447 cellulose synthase su 99.2 7.3E-11 1.6E-15 135.8 12.6 154 10-166 299-497 (1157)
75 PRK11189 lipoprotein NlpI; Pro 99.2 1.8E-10 3.9E-15 112.5 13.0 124 27-164 39-166 (296)
76 KOG0548 Molecular co-chaperone 99.2 1.2E-10 2.7E-15 115.8 11.6 112 15-126 3-114 (539)
77 cd00189 TPR Tetratricopeptide 99.2 2.8E-10 6.1E-15 89.3 11.8 99 16-114 2-100 (100)
78 PRK15331 chaperone protein Sic 99.2 7E-10 1.5E-14 95.6 14.8 111 9-120 32-142 (165)
79 PF00149 Metallophos: Calcineu 99.2 1.1E-10 2.4E-15 103.8 10.3 159 223-417 2-199 (200)
80 PF13414 TPR_11: TPR repeat; P 99.2 8E-11 1.7E-15 88.4 7.8 67 13-79 2-69 (69)
81 PLN02789 farnesyltranstransfer 99.2 5.5E-10 1.2E-14 109.4 14.7 146 11-170 34-182 (320)
82 TIGR03302 OM_YfiO outer membra 99.2 5.5E-10 1.2E-14 105.4 14.4 131 10-142 66-227 (235)
83 PF13414 TPR_11: TPR repeat; P 99.2 1.7E-10 3.6E-15 86.6 8.3 68 46-113 1-69 (69)
84 KOG2076 RNA polymerase III tra 99.1 2.9E-09 6.3E-14 111.8 19.7 130 11-142 136-265 (895)
85 COG5010 TadD Flp pilus assembl 99.1 1.6E-09 3.4E-14 99.4 15.4 131 10-142 96-226 (257)
86 PRK11447 cellulose synthase su 99.1 3.2E-10 6.9E-15 130.6 13.5 125 16-142 353-519 (1157)
87 TIGR02917 PEP_TPR_lipo putativ 99.1 9.7E-10 2.1E-14 123.0 16.2 132 9-142 120-251 (899)
88 KOG4648 Uncharacterized conser 99.1 3.1E-10 6.7E-15 106.9 9.9 113 13-125 96-208 (536)
89 KOG0553 TPR repeat-containing 99.1 2.7E-10 5.8E-15 106.3 9.3 100 51-164 84-183 (304)
90 CHL00033 ycf3 photosystem I as 99.1 2E-09 4.2E-14 96.2 14.4 109 8-116 29-154 (168)
91 KOG0550 Molecular chaperone (D 99.1 2.6E-10 5.6E-15 110.0 8.6 132 9-142 198-345 (486)
92 TIGR02917 PEP_TPR_lipo putativ 99.1 1.2E-09 2.6E-14 122.2 15.6 129 11-142 767-895 (899)
93 PRK10049 pgaA outer membrane p 99.1 1.7E-09 3.7E-14 119.2 16.4 130 10-142 45-174 (765)
94 PRK11788 tetratricopeptide rep 99.1 1.6E-09 3.5E-14 110.1 15.0 128 13-142 106-238 (389)
95 COG0639 ApaH Diadenosine tetra 99.1 1.4E-10 3.1E-15 101.1 6.3 143 295-439 2-154 (155)
96 PRK11788 tetratricopeptide rep 99.1 2.6E-09 5.6E-14 108.6 16.3 119 11-129 138-262 (389)
97 COG4783 Putative Zn-dependent 99.1 1.6E-09 3.5E-14 107.1 13.8 122 11-132 303-424 (484)
98 KOG2003 TPR repeat-containing 99.1 5.6E-10 1.2E-14 108.6 10.3 173 12-198 488-662 (840)
99 PF12895 Apc3: Anaphase-promot 99.1 3.3E-10 7.2E-15 88.6 7.1 82 26-108 1-84 (84)
100 KOG0550 Molecular chaperone (D 99.1 1E-09 2.2E-14 106.0 11.5 120 10-130 245-368 (486)
101 COG4235 Cytochrome c biogenesi 99.1 4.3E-09 9.3E-14 99.0 14.7 115 8-122 150-267 (287)
102 PRK15363 pathogenicity island 99.0 1.7E-09 3.7E-14 92.9 10.5 100 41-142 27-127 (157)
103 KOG0624 dsRNA-activated protei 99.0 1.1E-08 2.3E-13 96.8 16.0 194 15-210 156-355 (504)
104 COG5010 TadD Flp pilus assembl 99.0 4.5E-09 9.8E-14 96.4 12.6 131 9-142 62-192 (257)
105 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.8E-14 80.7 7.6 63 19-81 2-64 (65)
106 KOG1173 Anaphase-promoting com 99.0 6.7E-10 1.4E-14 111.1 7.7 184 8-193 306-520 (611)
107 KOG1173 Anaphase-promoting com 99.0 2.3E-09 5E-14 107.3 11.2 133 17-163 383-522 (611)
108 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.2E-14 80.4 7.2 65 52-116 1-65 (65)
109 KOG3060 Uncharacterized conser 99.0 1.4E-08 3.1E-13 92.4 14.3 146 11-168 83-229 (289)
110 PRK15179 Vi polysaccharide bio 99.0 8.7E-09 1.9E-13 110.6 15.3 110 9-118 115-224 (694)
111 PF13429 TPR_15: Tetratricopep 99.0 2.5E-09 5.5E-14 103.8 10.0 129 12-142 108-238 (280)
112 PRK10803 tol-pal system protei 99.0 2.4E-08 5.2E-13 95.1 16.2 107 13-119 141-254 (263)
113 PRK10866 outer membrane biogen 99.0 2.2E-08 4.8E-13 94.5 15.4 151 12-162 30-207 (243)
114 PRK14574 hmsH outer membrane p 98.9 7.5E-09 1.6E-13 113.1 13.8 129 10-142 30-160 (822)
115 PRK10049 pgaA outer membrane p 98.9 1.3E-08 2.8E-13 112.4 15.7 131 9-142 10-140 (765)
116 PRK14720 transcript cleavage f 98.9 1.4E-08 3E-13 110.0 15.0 154 4-162 21-201 (906)
117 KOG4555 TPR repeat-containing 98.9 8.5E-08 1.8E-12 78.5 15.5 106 11-116 40-149 (175)
118 PF13525 YfiO: Outer membrane 98.9 2.6E-08 5.7E-13 91.7 14.4 151 12-162 3-173 (203)
119 cd00841 MPP_YfcE Escherichia c 98.9 6.7E-08 1.5E-12 85.0 15.1 81 224-342 2-85 (155)
120 KOG1840 Kinesin light chain [C 98.9 2.8E-08 6.2E-13 102.0 13.6 213 9-244 236-476 (508)
121 PF12688 TPR_5: Tetratrico pep 98.9 7E-08 1.5E-12 80.2 13.3 96 15-110 2-103 (120)
122 PRK10153 DNA-binding transcrip 98.8 5.1E-08 1.1E-12 101.7 15.2 143 13-170 338-493 (517)
123 KOG4162 Predicted calmodulin-b 98.8 2E-08 4.4E-13 104.0 11.8 127 14-142 650-778 (799)
124 KOG2002 TPR-containing nuclear 98.8 1.8E-08 3.9E-13 106.6 11.5 161 9-169 159-347 (1018)
125 PLN03088 SGT1, suppressor of 98.8 1.9E-08 4.2E-13 100.7 11.2 101 51-165 5-105 (356)
126 COG4783 Putative Zn-dependent 98.8 1E-07 2.2E-12 94.6 15.0 123 8-130 334-456 (484)
127 KOG4162 Predicted calmodulin-b 98.8 5.8E-08 1.3E-12 100.6 13.1 109 9-117 679-789 (799)
128 PRK11906 transcriptional regul 98.8 8.1E-08 1.8E-12 95.7 13.3 137 16-166 257-408 (458)
129 CHL00033 ycf3 photosystem I as 98.8 2E-08 4.4E-13 89.6 8.3 108 23-130 8-120 (168)
130 KOG1840 Kinesin light chain [C 98.8 1.1E-07 2.3E-12 97.9 14.3 186 6-210 191-400 (508)
131 COG2956 Predicted N-acetylgluc 98.8 8.5E-08 1.9E-12 90.2 12.3 142 10-165 103-249 (389)
132 PF13371 TPR_9: Tetratricopept 98.8 4.6E-08 1E-12 74.1 8.7 67 55-121 2-68 (73)
133 KOG1128 Uncharacterized conser 98.8 2.6E-08 5.6E-13 102.6 9.4 128 13-142 484-611 (777)
134 cd00189 TPR Tetratricopeptide 98.8 7.8E-08 1.7E-12 75.1 10.3 91 50-142 2-92 (100)
135 PF13512 TPR_18: Tetratricopep 98.8 3.4E-07 7.4E-12 77.4 14.4 106 13-118 9-135 (142)
136 COG4785 NlpI Lipoprotein NlpI, 98.8 6.4E-08 1.4E-12 86.1 10.3 119 8-126 59-177 (297)
137 PF14559 TPR_19: Tetratricopep 98.7 2.5E-08 5.4E-13 74.4 6.6 65 25-89 2-66 (68)
138 KOG2002 TPR-containing nuclear 98.7 1E-07 2.2E-12 101.1 13.3 122 9-130 302-428 (1018)
139 KOG1129 TPR repeat-containing 98.7 2.7E-08 5.9E-13 93.5 8.1 123 11-133 253-375 (478)
140 KOG0545 Aryl-hydrocarbon recep 98.7 2.1E-07 4.5E-12 84.4 13.2 109 11-119 175-301 (329)
141 KOG4642 Chaperone-dependent E3 98.7 2.7E-08 5.9E-13 89.7 7.6 100 13-112 9-108 (284)
142 PF13371 TPR_9: Tetratricopept 98.7 7.4E-08 1.6E-12 72.9 8.7 70 20-89 1-70 (73)
143 PRK02603 photosystem I assembl 98.7 3.2E-08 6.9E-13 88.7 7.5 87 45-131 32-121 (172)
144 PF09976 TPR_21: Tetratricopep 98.7 4.6E-07 1E-11 78.7 14.5 129 11-142 8-142 (145)
145 COG4235 Cytochrome c biogenesi 98.7 1.9E-07 4.2E-12 87.9 12.6 112 29-142 137-251 (287)
146 PF14559 TPR_19: Tetratricopep 98.7 4.2E-08 9.1E-13 73.2 6.7 67 58-124 1-67 (68)
147 PF09976 TPR_21: Tetratricopep 98.7 2.1E-07 4.6E-12 80.8 12.1 98 11-109 45-145 (145)
148 PF12850 Metallophos_2: Calcin 98.7 2.6E-07 5.6E-12 81.1 12.7 149 223-451 2-151 (156)
149 KOG2076 RNA polymerase III tra 98.7 2.3E-07 5E-12 97.8 14.2 109 5-113 164-272 (895)
150 KOG2003 TPR repeat-containing 98.7 2.9E-07 6.2E-12 90.0 13.4 132 9-142 519-650 (840)
151 KOG1129 TPR repeat-containing 98.7 2.2E-08 4.7E-13 94.2 5.2 132 9-142 285-453 (478)
152 TIGR02795 tol_pal_ybgF tol-pal 98.7 2E-07 4.3E-12 77.4 10.7 93 48-142 2-100 (119)
153 COG1729 Uncharacterized protei 98.7 8.5E-07 1.8E-11 82.6 15.2 108 15-122 142-255 (262)
154 cd07397 MPP_DevT Myxococcus xa 98.6 3.5E-07 7.6E-12 85.0 12.4 109 223-342 2-157 (238)
155 TIGR00040 yfcE phosphoesterase 98.6 9.4E-07 2E-11 78.0 14.6 63 223-294 2-64 (158)
156 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.4E-07 3.1E-12 93.9 9.9 68 44-111 71-141 (453)
157 COG2956 Predicted N-acetylgluc 98.6 7.1E-07 1.5E-11 84.2 13.6 119 14-132 141-265 (389)
158 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2E-07 4.3E-12 92.8 10.6 72 6-77 67-141 (453)
159 cd05804 StaR_like StaR_like; a 98.6 4E-07 8.6E-12 91.4 13.1 128 12-142 41-172 (355)
160 PRK11906 transcriptional regul 98.6 8.4E-07 1.8E-11 88.6 14.6 112 8-119 289-409 (458)
161 KOG0551 Hsp90 co-chaperone CNS 98.6 3.9E-07 8.4E-12 86.2 11.3 111 7-117 74-188 (390)
162 PF06552 TOM20_plant: Plant sp 98.6 6.1E-07 1.3E-11 78.3 11.7 97 30-126 7-124 (186)
163 TIGR00540 hemY_coli hemY prote 98.6 5E-07 1.1E-11 92.6 13.3 129 11-142 260-394 (409)
164 PRK14574 hmsH outer membrane p 98.6 6.8E-07 1.5E-11 98.0 14.9 118 13-131 101-218 (822)
165 cd05804 StaR_like StaR_like; a 98.6 6E-07 1.3E-11 90.1 12.9 100 12-111 112-215 (355)
166 TIGR00540 hemY_coli hemY prote 98.6 2.8E-06 6E-11 87.1 17.2 129 12-142 82-211 (409)
167 PRK10747 putative protoheme IX 98.6 7E-07 1.5E-11 91.1 12.7 128 9-142 258-385 (398)
168 cd07379 MPP_239FB Homo sapiens 98.5 1E-06 2.2E-11 75.5 11.5 117 224-422 2-120 (135)
169 KOG3060 Uncharacterized conser 98.5 3E-06 6.4E-11 77.5 14.8 140 12-165 50-189 (289)
170 PRK09453 phosphodiesterase; Pr 98.5 3.3E-07 7.1E-12 82.9 8.5 68 223-295 2-77 (182)
171 KOG1156 N-terminal acetyltrans 98.5 5.5E-07 1.2E-11 91.9 10.7 121 11-131 38-158 (700)
172 KOG1174 Anaphase-promoting com 98.5 1.5E-06 3.2E-11 84.5 12.8 133 8-142 226-392 (564)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.8E-06 6.2E-11 85.1 15.4 116 22-142 177-292 (395)
174 PF13424 TPR_12: Tetratricopep 98.5 3.8E-07 8.2E-12 70.0 6.9 67 11-77 2-75 (78)
175 KOG1128 Uncharacterized conser 98.5 1E-06 2.3E-11 91.1 11.9 128 12-142 422-577 (777)
176 KOG1156 N-terminal acetyltrans 98.5 1.3E-06 2.8E-11 89.2 12.4 123 10-132 3-125 (700)
177 KOG1174 Anaphase-promoting com 98.5 5.3E-07 1.1E-11 87.5 8.7 144 12-168 298-442 (564)
178 PF12895 Apc3: Anaphase-promot 98.5 1.7E-07 3.6E-12 73.2 4.3 79 61-142 2-82 (84)
179 KOG0543 FKBP-type peptidyl-pro 98.5 1.9E-06 4.1E-11 84.1 12.0 100 14-113 257-357 (397)
180 PRK10153 DNA-binding transcrip 98.5 2.2E-06 4.7E-11 89.6 13.4 110 8-118 370-489 (517)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-06 3.5E-11 86.9 11.8 95 14-108 200-294 (395)
182 PF13424 TPR_12: Tetratricopep 98.4 2.8E-07 6E-12 70.8 4.6 67 45-111 2-75 (78)
183 PF08321 PPP5: PPP5 TPR repeat 98.4 6E-07 1.3E-11 70.8 6.4 94 122-216 2-95 (95)
184 PRK10747 putative protoheme IX 98.4 8.8E-06 1.9E-10 83.1 16.7 129 11-142 81-211 (398)
185 cd00838 MPP_superfamily metall 98.4 3.3E-06 7.2E-11 71.0 10.9 117 225-422 1-119 (131)
186 PRK14720 transcript cleavage f 98.4 4.3E-06 9.3E-11 91.1 14.0 132 11-143 113-286 (906)
187 KOG0376 Serine-threonine phosp 98.4 2.6E-08 5.7E-13 98.6 -2.8 240 191-440 15-299 (476)
188 PRK15331 chaperone protein Sic 98.4 1.8E-06 3.9E-11 74.7 8.3 100 41-142 30-129 (165)
189 KOG1127 TPR repeat-containing 98.4 1.3E-06 2.9E-11 92.9 8.9 131 10-142 488-654 (1238)
190 KOG0495 HAT repeat protein [RN 98.3 6.5E-06 1.4E-10 84.2 13.1 128 13-142 650-777 (913)
191 cd07394 MPP_Vps29 Homo sapiens 98.3 3E-05 6.4E-10 69.7 15.7 108 224-418 2-118 (178)
192 PRK10803 tol-pal system protei 98.3 6.2E-06 1.4E-10 78.6 11.5 93 48-142 142-241 (263)
193 COG4700 Uncharacterized protei 98.3 3.5E-05 7.7E-10 67.4 14.7 119 13-132 88-209 (251)
194 PF12688 TPR_5: Tetratrico pep 98.3 1.1E-05 2.3E-10 67.2 11.0 92 49-142 2-99 (120)
195 PF12569 NARP1: NMDA receptor- 98.3 2.4E-05 5.1E-10 81.5 15.9 128 14-142 194-329 (517)
196 PF12569 NARP1: NMDA receptor- 98.3 2E-05 4.4E-10 82.0 15.4 133 8-142 32-252 (517)
197 cd07388 MPP_Tt1561 Thermus the 98.2 3.6E-05 7.7E-10 71.5 14.9 70 223-294 6-75 (224)
198 KOG1308 Hsp70-interacting prot 98.2 4.7E-07 1E-11 86.1 1.5 106 9-114 109-214 (377)
199 cd07404 MPP_MS158 Microscilla 98.2 7.1E-06 1.5E-10 72.9 9.1 68 224-294 1-68 (166)
200 COG4105 ComL DNA uptake lipopr 98.2 6.1E-05 1.3E-09 69.8 15.2 147 13-159 33-196 (254)
201 PF13525 YfiO: Outer membrane 98.2 7.5E-05 1.6E-09 68.7 16.0 124 10-133 38-195 (203)
202 KOG3785 Uncharacterized conser 98.2 3.5E-06 7.6E-11 80.4 7.1 120 12-131 55-200 (557)
203 KOG1127 TPR repeat-containing 98.2 2.5E-06 5.4E-11 90.8 6.3 117 12-128 560-676 (1238)
204 KOG4648 Uncharacterized conser 98.1 3.7E-06 7.9E-11 79.9 5.8 99 51-163 100-198 (536)
205 KOG0495 HAT repeat protein [RN 98.1 6.2E-05 1.3E-09 77.3 14.8 129 11-142 581-709 (913)
206 PRK10866 outer membrane biogen 98.1 0.00023 5E-09 67.3 17.6 122 11-132 66-228 (243)
207 PF04733 Coatomer_E: Coatomer 98.1 2.7E-05 5.8E-10 75.6 10.5 121 12-132 129-251 (290)
208 PRK05340 UDP-2,3-diacylglucosa 98.0 4.9E-05 1.1E-09 72.0 11.7 211 223-463 2-238 (241)
209 PF14938 SNAP: Soluble NSF att 98.0 2E-05 4.4E-10 76.4 8.9 98 13-111 34-144 (282)
210 PF13428 TPR_14: Tetratricopep 98.0 1.5E-05 3.2E-10 53.7 5.6 40 84-123 3-42 (44)
211 KOG4234 TPR repeat-containing 98.0 2.1E-05 4.5E-10 69.6 7.8 100 51-164 98-202 (271)
212 PF13428 TPR_14: Tetratricopep 98.0 1.3E-05 2.8E-10 54.0 5.2 40 50-89 3-42 (44)
213 PF13431 TPR_17: Tetratricopep 98.0 8.2E-06 1.8E-10 51.5 3.3 32 71-102 2-33 (34)
214 PF13431 TPR_17: Tetratricopep 97.9 9.4E-06 2E-10 51.2 3.2 34 36-69 1-34 (34)
215 COG4785 NlpI Lipoprotein NlpI, 97.9 7.1E-05 1.5E-09 67.1 9.8 74 9-82 94-167 (297)
216 TIGR01854 lipid_A_lpxH UDP-2,3 97.9 4E-05 8.7E-10 72.0 8.8 201 225-451 2-226 (231)
217 cd07403 MPP_TTHA0053 Thermus t 97.9 0.00013 2.8E-09 61.9 11.0 106 226-422 2-107 (129)
218 cd07399 MPP_YvnB Bacillus subt 97.9 0.00089 1.9E-08 62.1 17.5 193 223-464 2-212 (214)
219 cd07392 MPP_PAE1087 Pyrobaculu 97.9 0.00021 4.5E-09 64.6 13.0 65 224-295 1-66 (188)
220 COG0622 Predicted phosphoester 97.9 0.00069 1.5E-08 60.1 15.3 159 223-466 3-166 (172)
221 KOG4555 TPR repeat-containing 97.8 0.00013 2.7E-09 60.2 8.8 90 51-142 46-139 (175)
222 PF14938 SNAP: Soluble NSF att 97.8 0.00017 3.7E-09 70.0 11.0 109 9-117 109-231 (282)
223 PF06552 TOM20_plant: Plant sp 97.8 0.00017 3.8E-09 63.1 9.5 80 9-88 20-120 (186)
224 PF00515 TPR_1: Tetratricopept 97.8 4.4E-05 9.6E-10 48.1 4.4 32 83-114 2-33 (34)
225 PLN03081 pentatricopeptide (PP 97.8 0.00063 1.4E-08 74.8 16.0 124 14-142 259-384 (697)
226 PF00515 TPR_1: Tetratricopept 97.8 5.2E-05 1.1E-09 47.8 4.4 32 49-80 2-33 (34)
227 KOG1130 Predicted G-alpha GTPa 97.7 2.5E-05 5.4E-10 76.0 4.0 129 12-142 193-339 (639)
228 PF03704 BTAD: Bacterial trans 97.7 0.0011 2.4E-08 57.4 13.9 97 15-111 7-125 (146)
229 PF07719 TPR_2: Tetratricopept 97.7 9.6E-05 2.1E-09 46.4 5.1 32 83-114 2-33 (34)
230 PLN03081 pentatricopeptide (PP 97.7 0.0018 3.9E-08 71.2 17.9 125 13-142 359-486 (697)
231 KOG1941 Acetylcholine receptor 97.7 0.00023 5E-09 68.5 9.2 175 48-243 83-268 (518)
232 PF07719 TPR_2: Tetratricopept 97.7 0.00013 2.7E-09 45.8 5.1 32 15-46 2-33 (34)
233 KOG3785 Uncharacterized conser 97.6 0.00014 3E-09 69.8 7.4 141 22-166 30-187 (557)
234 KOG2376 Signal recognition par 97.6 0.00056 1.2E-08 69.8 12.0 122 15-142 13-134 (652)
235 COG1729 Uncharacterized protei 97.6 0.00043 9.3E-09 64.8 10.1 90 51-142 144-239 (262)
236 cd07400 MPP_YydB Bacillus subt 97.6 0.0014 3E-08 56.6 12.6 29 394-422 101-129 (144)
237 PF13512 TPR_18: Tetratricopep 97.6 0.0015 3.3E-08 55.4 12.3 84 47-130 9-98 (142)
238 PF04733 Coatomer_E: Coatomer 97.6 0.00047 1E-08 66.9 10.5 100 20-119 171-273 (290)
239 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0018 3.9E-08 58.5 14.0 131 10-142 91-226 (291)
240 cd07395 MPP_CSTP1 Homo sapiens 97.5 0.0057 1.2E-07 58.6 17.4 28 395-422 195-222 (262)
241 KOG2796 Uncharacterized conser 97.5 0.0011 2.4E-08 61.3 11.3 127 14-142 177-310 (366)
242 cd07383 MPP_Dcr2 Saccharomyces 97.5 0.0031 6.8E-08 57.7 14.4 70 223-292 4-87 (199)
243 KOG4642 Chaperone-dependent E3 97.5 0.00015 3.2E-09 66.0 5.3 88 53-142 15-102 (284)
244 COG3118 Thioredoxin domain-con 97.5 0.0038 8.2E-08 59.1 14.6 118 14-131 134-287 (304)
245 PLN03077 Protein ECB2; Provisi 97.5 0.0043 9.2E-08 70.0 18.1 118 18-142 528-649 (857)
246 PLN03218 maturation of RBCL 1; 97.5 0.0061 1.3E-07 69.3 18.6 127 13-142 506-638 (1060)
247 KOG1130 Predicted G-alpha GTPa 97.4 0.0004 8.7E-09 67.9 7.7 119 13-131 234-370 (639)
248 KOG1586 Protein required for f 97.4 0.0072 1.6E-07 55.1 14.7 103 10-113 30-145 (288)
249 KOG4340 Uncharacterized conser 97.4 0.00094 2E-08 62.8 9.4 131 10-142 40-202 (459)
250 KOG2376 Signal recognition par 97.4 0.0017 3.6E-08 66.5 11.2 120 18-142 83-248 (652)
251 PLN03218 maturation of RBCL 1; 97.4 0.0042 9E-08 70.6 15.8 94 16-110 544-642 (1060)
252 COG3071 HemY Uncharacterized e 97.3 0.0032 6.8E-08 61.7 12.3 124 13-142 262-385 (400)
253 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0073 1.6E-07 54.5 14.2 105 23-127 139-247 (291)
254 KOG2796 Uncharacterized conser 97.3 0.0026 5.6E-08 59.0 10.6 119 8-126 206-333 (366)
255 PRK11340 phosphodiesterase Yae 97.3 0.00067 1.4E-08 65.4 7.3 71 221-294 49-125 (271)
256 KOG1310 WD40 repeat protein [G 97.3 0.00097 2.1E-08 67.2 8.3 109 9-117 369-480 (758)
257 KOG2471 TPR repeat-containing 97.2 0.001 2.2E-08 66.5 8.1 120 12-131 238-384 (696)
258 COG4700 Uncharacterized protei 97.2 0.0048 1E-07 54.3 11.3 120 20-142 62-184 (251)
259 cd07391 MPP_PF1019 Pyrococcus 97.2 0.00092 2E-08 59.7 7.1 45 250-294 42-88 (172)
260 COG3071 HemY Uncharacterized e 97.2 0.047 1E-06 53.7 18.9 130 11-142 81-211 (400)
261 KOG4340 Uncharacterized conser 97.2 0.0032 6.9E-08 59.3 10.4 85 24-108 20-104 (459)
262 KOG2053 Mitochondrial inherita 97.2 0.005 1.1E-07 65.9 12.9 104 24-128 19-122 (932)
263 PF05843 Suf: Suppressor of fo 97.2 0.0028 6.1E-08 61.3 10.6 115 16-130 3-121 (280)
264 PF06874 FBPase_2: Firmicute f 97.2 0.0035 7.6E-08 65.0 11.4 66 394-462 507-582 (640)
265 KOG0545 Aryl-hydrocarbon recep 97.2 0.0015 3.3E-08 59.8 7.6 104 48-165 178-299 (329)
266 PRK10941 hypothetical protein; 97.1 0.0059 1.3E-07 58.3 11.9 78 49-126 182-259 (269)
267 cd07385 MPP_YkuE_C Bacillus su 97.1 0.001 2.2E-08 62.0 6.7 70 223-295 3-77 (223)
268 PF13181 TPR_8: Tetratricopept 97.1 0.00089 1.9E-08 41.9 4.3 30 84-113 3-32 (34)
269 PF12968 DUF3856: Domain of Un 97.1 0.023 5E-07 46.2 12.7 98 14-111 7-129 (144)
270 KOG1915 Cell cycle control pro 97.1 0.0092 2E-07 59.7 12.7 132 10-142 400-531 (677)
271 cd07398 MPP_YbbF-LpxH Escheric 97.1 0.00055 1.2E-08 63.6 4.2 26 393-418 176-201 (217)
272 PF04184 ST7: ST7 protein; In 97.1 0.0045 9.7E-08 62.5 10.6 120 19-142 173-319 (539)
273 PF13181 TPR_8: Tetratricopept 97.1 0.0012 2.7E-08 41.3 4.4 30 50-79 3-32 (34)
274 COG2976 Uncharacterized protei 97.0 0.0087 1.9E-07 53.2 11.0 101 14-116 89-193 (207)
275 cd07384 MPP_Cdc1_like Saccharo 97.0 0.0062 1.3E-07 54.3 10.4 47 249-295 45-101 (171)
276 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0018 3.9E-08 57.6 6.8 43 249-296 42-84 (168)
277 PRK04036 DNA polymerase II sma 97.0 0.019 4.2E-07 60.2 15.4 54 407-464 441-503 (504)
278 KOG1941 Acetylcholine receptor 97.0 0.0034 7.3E-08 60.7 8.4 126 15-142 123-270 (518)
279 KOG4507 Uncharacterized conser 96.9 0.0041 9E-08 63.5 9.2 100 26-125 619-719 (886)
280 PLN03077 Protein ECB2; Provisi 96.9 0.023 4.9E-07 64.2 16.1 120 14-142 424-578 (857)
281 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0071 1.5E-07 42.2 7.4 47 83-129 2-48 (53)
282 TIGR03729 acc_ester putative p 96.9 0.0021 4.5E-08 60.8 6.4 67 224-294 2-74 (239)
283 KOG3081 Vesicle coat complex C 96.9 0.025 5.4E-07 52.7 12.9 108 22-131 145-256 (299)
284 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0079 1.7E-07 57.6 9.8 95 48-144 81-179 (390)
285 KOG3824 Huntingtin interacting 96.8 0.0053 1.1E-07 58.1 8.1 81 10-90 112-192 (472)
286 KOG1586 Protein required for f 96.8 0.033 7.3E-07 50.9 12.8 150 12-168 71-233 (288)
287 PF03704 BTAD: Bacterial trans 96.7 0.013 2.8E-07 50.6 9.6 64 14-77 62-125 (146)
288 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0026 5.5E-08 60.7 5.6 71 224-294 1-86 (262)
289 KOG1915 Cell cycle control pro 96.7 0.029 6.3E-07 56.2 12.8 127 13-142 72-198 (677)
290 cd07396 MPP_Nbla03831 Homo sap 96.7 0.0046 1E-07 59.5 7.2 74 223-297 2-89 (267)
291 PF14561 TPR_20: Tetratricopep 96.7 0.02 4.3E-07 45.0 9.4 74 33-106 7-82 (90)
292 KOG1070 rRNA processing protei 96.6 0.06 1.3E-06 60.6 15.7 127 13-142 1496-1624(1710)
293 PF04781 DUF627: Protein of un 96.6 0.023 5E-07 45.9 9.5 92 20-111 2-107 (111)
294 PRK04841 transcriptional regul 96.6 0.034 7.3E-07 63.2 14.6 96 16-111 493-602 (903)
295 PF05843 Suf: Suppressor of fo 96.6 0.042 9.1E-07 53.2 13.0 106 13-118 34-143 (280)
296 KOG2053 Mitochondrial inherita 96.5 0.034 7.4E-07 59.8 12.8 108 9-117 38-145 (932)
297 PRK04841 transcriptional regul 96.5 0.031 6.7E-07 63.5 13.6 128 13-142 451-597 (903)
298 COG1409 Icc Predicted phosphoh 96.5 0.042 9.1E-07 53.3 12.8 74 223-298 2-82 (301)
299 KOG2610 Uncharacterized conser 96.5 0.024 5.1E-07 54.5 10.3 122 19-142 108-233 (491)
300 KOG3364 Membrane protein invol 96.5 0.073 1.6E-06 44.5 11.9 85 47-131 31-120 (149)
301 PF13174 TPR_6: Tetratricopept 96.5 0.0052 1.1E-07 37.9 4.2 31 84-114 2-32 (33)
302 PF10300 DUF3808: Protein of u 96.5 0.028 6E-07 58.6 11.8 105 27-131 246-355 (468)
303 cd08163 MPP_Cdc1 Saccharomyces 96.5 0.15 3.2E-06 48.7 15.8 161 250-425 46-233 (257)
304 PF15015 NYD-SP12_N: Spermatog 96.4 0.05 1.1E-06 53.8 12.4 92 18-109 180-289 (569)
305 PF13174 TPR_6: Tetratricopept 96.4 0.006 1.3E-07 37.6 4.3 31 16-46 2-32 (33)
306 TIGR00619 sbcd exonuclease Sbc 96.4 0.0074 1.6E-07 57.5 6.7 72 223-295 2-89 (253)
307 PF10300 DUF3808: Protein of u 96.4 0.024 5.3E-07 59.0 10.9 103 10-112 263-377 (468)
308 PF13176 TPR_7: Tetratricopept 96.4 0.007 1.5E-07 38.5 4.2 28 50-77 1-28 (36)
309 PRK10941 hypothetical protein; 96.4 0.052 1.1E-06 51.9 11.9 78 14-91 181-258 (269)
310 KOG3081 Vesicle coat complex C 96.3 0.12 2.5E-06 48.5 13.5 107 12-118 167-278 (299)
311 cd07402 MPP_GpdQ Enterobacter 96.3 0.012 2.5E-07 55.5 7.3 67 224-294 2-83 (240)
312 COG4105 ComL DNA uptake lipopr 96.3 0.31 6.7E-06 45.6 16.1 121 12-132 69-220 (254)
313 KOG1585 Protein required for f 96.3 0.19 4.2E-06 46.4 14.4 102 13-114 30-142 (308)
314 PRK11148 cyclic 3',5'-adenosin 96.3 0.012 2.5E-07 57.0 7.1 71 222-294 15-98 (275)
315 KOG3824 Huntingtin interacting 96.3 0.015 3.2E-07 55.2 7.3 76 51-126 119-194 (472)
316 cd08166 MPP_Cdc1_like_1 unchar 96.2 0.0099 2.1E-07 53.7 5.9 45 250-294 43-93 (195)
317 PHA02546 47 endonuclease subun 96.2 0.0094 2E-07 59.4 6.3 71 223-294 2-89 (340)
318 PF09613 HrpB1_HrpK: Bacterial 96.2 0.11 2.5E-06 45.0 11.8 115 10-126 6-120 (160)
319 KOG1070 rRNA processing protei 96.1 0.094 2E-06 59.1 13.7 114 9-126 1453-1574(1710)
320 KOG2396 HAT (Half-A-TPR) repea 96.1 0.1 2.3E-06 52.8 12.7 93 31-123 88-181 (568)
321 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.03 6.5E-07 39.0 6.4 39 50-88 3-41 (53)
322 cd07393 MPP_DR1119 Deinococcus 96.0 0.016 3.4E-07 54.5 6.7 44 394-439 181-227 (232)
323 COG4976 Predicted methyltransf 96.0 0.0091 2E-07 54.3 4.7 59 23-81 4-62 (287)
324 KOG0918 Selenium-binding prote 96.0 0.00026 5.6E-09 68.8 -5.5 193 248-453 46-249 (476)
325 PF02259 FAT: FAT domain; Int 96.0 0.2 4.4E-06 49.8 14.7 121 10-130 142-306 (352)
326 KOG2047 mRNA splicing factor [ 95.9 0.53 1.1E-05 49.3 17.1 127 14-142 387-535 (835)
327 KOG0546 HSP90 co-chaperone CPR 95.9 0.015 3.1E-07 56.4 5.6 119 13-131 221-358 (372)
328 KOG2610 Uncharacterized conser 95.9 0.05 1.1E-06 52.3 9.0 139 10-148 133-277 (491)
329 smart00028 TPR Tetratricopepti 95.8 0.016 3.5E-07 34.5 4.0 30 84-113 3-32 (34)
330 smart00028 TPR Tetratricopepti 95.8 0.014 3.1E-07 34.8 3.7 31 50-80 3-33 (34)
331 KOG1308 Hsp70-interacting prot 95.8 0.0015 3.3E-08 62.6 -1.2 84 57-142 123-206 (377)
332 KOG1585 Protein required for f 95.8 0.92 2E-05 42.1 16.5 135 8-142 65-214 (308)
333 cd00840 MPP_Mre11_N Mre11 nucl 95.8 0.018 4E-07 53.4 6.0 73 224-297 2-92 (223)
334 PF09986 DUF2225: Uncharacteri 95.8 0.11 2.4E-06 48.0 10.8 89 26-114 89-197 (214)
335 COG4976 Predicted methyltransf 95.8 0.014 3E-07 53.1 4.6 62 56-117 3-64 (287)
336 PF13281 DUF4071: Domain of un 95.8 0.28 6E-06 49.0 14.2 71 10-80 175-258 (374)
337 KOG4814 Uncharacterized conser 95.7 0.12 2.5E-06 53.9 11.6 96 16-111 356-457 (872)
338 PF14561 TPR_20: Tetratricopep 95.7 0.068 1.5E-06 42.0 8.0 67 66-132 6-74 (90)
339 KOG0530 Protein farnesyltransf 95.5 0.31 6.7E-06 45.6 12.4 109 24-132 53-163 (318)
340 cd08165 MPP_MPPE1 human MPPE1 95.5 0.025 5.5E-07 49.5 5.3 47 249-295 38-90 (156)
341 TIGR00024 SbcD_rel_arch putati 95.4 0.036 7.8E-07 51.7 6.3 42 250-295 59-103 (225)
342 PRK10966 exonuclease subunit S 95.4 0.047 1E-06 55.7 7.6 46 249-295 39-88 (407)
343 PF10602 RPN7: 26S proteasome 95.3 0.41 8.9E-06 42.8 12.4 62 49-110 37-101 (177)
344 PF04184 ST7: ST7 protein; In 95.2 0.29 6.2E-06 49.9 12.2 116 5-120 210-334 (539)
345 COG3914 Spy Predicted O-linked 95.1 0.4 8.7E-06 49.7 13.1 115 10-125 64-185 (620)
346 cd07380 MPP_CWF19_N Schizosacc 95.1 0.06 1.3E-06 46.7 6.3 119 225-416 1-120 (150)
347 TIGR00583 mre11 DNA repair pro 95.1 0.069 1.5E-06 54.2 7.5 74 222-296 4-125 (405)
348 cd00839 MPP_PAPs purple acid p 94.9 0.05 1.1E-06 53.0 6.1 36 394-429 181-216 (294)
349 PF09613 HrpB1_HrpK: Bacterial 94.9 0.41 8.9E-06 41.6 10.7 84 49-132 11-94 (160)
350 COG2912 Uncharacterized conser 94.8 0.22 4.8E-06 47.0 9.4 76 50-125 183-258 (269)
351 KOG2471 TPR repeat-containing 94.7 0.044 9.6E-07 55.2 5.0 81 14-94 283-381 (696)
352 COG1407 Predicted ICC-like pho 94.7 0.11 2.5E-06 48.0 7.3 77 223-302 21-118 (235)
353 COG4186 Predicted phosphoester 94.7 0.17 3.7E-06 43.2 7.6 49 250-302 46-94 (186)
354 cd08164 MPP_Ted1 Saccharomyces 94.7 0.058 1.3E-06 48.7 5.2 65 229-293 24-110 (193)
355 PF13281 DUF4071: Domain of un 94.6 0.55 1.2E-05 46.9 12.4 101 15-115 142-259 (374)
356 TIGR02561 HrpB1_HrpK type III 94.5 1.7 3.8E-05 37.2 13.3 89 12-100 8-96 (153)
357 PF08424 NRDE-2: NRDE-2, neces 94.4 1.1 2.3E-05 44.4 13.9 104 8-111 13-131 (321)
358 cd07401 MPP_TMEM62_N Homo sapi 94.3 0.11 2.3E-06 49.7 6.6 29 398-426 190-218 (256)
359 COG2976 Uncharacterized protei 94.3 0.87 1.9E-05 40.8 11.6 89 50-142 91-183 (207)
360 COG2908 Uncharacterized protei 94.3 0.17 3.6E-06 46.8 7.3 202 226-457 2-230 (237)
361 PF13374 TPR_10: Tetratricopep 94.0 0.13 2.9E-06 33.2 4.6 27 50-76 4-30 (42)
362 cd07386 MPP_DNA_pol_II_small_a 93.9 0.11 2.4E-06 49.1 5.8 44 250-295 36-95 (243)
363 PF08424 NRDE-2: NRDE-2, neces 93.9 1.3 2.7E-05 43.9 13.4 93 34-126 5-109 (321)
364 KOG1550 Extracellular protein 93.9 0.81 1.8E-05 48.8 12.7 113 12-128 242-372 (552)
365 cd00845 MPP_UshA_N_like Escher 93.9 0.11 2.3E-06 49.4 5.6 66 223-293 2-81 (252)
366 COG1408 Predicted phosphohydro 93.7 0.15 3.4E-06 49.2 6.3 73 221-297 44-121 (284)
367 PF13374 TPR_10: Tetratricopep 93.7 0.16 3.4E-06 32.9 4.6 31 14-44 2-32 (42)
368 COG0790 FOG: TPR repeat, SEL1 93.7 2.2 4.8E-05 41.2 14.6 106 14-123 109-230 (292)
369 PF07079 DUF1347: Protein of u 93.6 1.5 3.3E-05 44.2 13.0 126 12-142 377-519 (549)
370 COG2912 Uncharacterized conser 93.6 0.5 1.1E-05 44.6 9.2 75 16-90 183-257 (269)
371 PRK15180 Vi polysaccharide bio 93.5 0.66 1.4E-05 47.0 10.4 121 20-142 295-415 (831)
372 KOG2047 mRNA splicing factor [ 93.4 1 2.2E-05 47.4 11.8 131 12-142 423-574 (835)
373 COG5191 Uncharacterized conser 93.4 0.2 4.3E-06 47.9 6.2 88 37-124 96-184 (435)
374 PF10602 RPN7: 26S proteasome 93.4 1.5 3.3E-05 39.1 11.8 99 10-108 32-139 (177)
375 PF10579 Rapsyn_N: Rapsyn N-te 93.4 0.94 2E-05 34.2 8.5 64 13-76 5-71 (80)
376 KOG3325 Membrane coat complex 93.2 1.2 2.7E-05 37.7 9.9 116 224-422 3-123 (183)
377 COG3898 Uncharacterized membra 93.1 2.1 4.5E-05 42.5 12.7 100 12-112 118-218 (531)
378 PF02259 FAT: FAT domain; Int 93.0 1.2 2.5E-05 44.3 11.8 102 13-114 183-341 (352)
379 KOG0530 Protein farnesyltransf 93.0 0.33 7.1E-06 45.4 6.9 121 8-128 106-233 (318)
380 KOG3364 Membrane protein invol 93.0 1 2.2E-05 37.8 9.0 78 14-91 32-114 (149)
381 PF08631 SPO22: Meiosis protei 92.8 5.6 0.00012 38.3 15.7 105 9-113 30-152 (278)
382 KOG3662 Cell division control 92.7 0.25 5.5E-06 49.5 6.1 69 233-308 77-151 (410)
383 KOG3617 WD40 and TPR repeat-co 92.6 1.1 2.4E-05 48.3 10.9 102 9-110 853-995 (1416)
384 TIGR02561 HrpB1_HrpK type III 92.5 1.5 3.3E-05 37.5 9.8 82 51-132 13-94 (153)
385 PF04910 Tcf25: Transcriptiona 92.5 1.7 3.7E-05 43.6 11.9 88 40-127 32-149 (360)
386 KOG4507 Uncharacterized conser 92.3 0.51 1.1E-05 48.9 7.8 75 15-89 643-717 (886)
387 KOG1550 Extracellular protein 92.1 2.3 4.9E-05 45.4 13.1 105 16-126 290-406 (552)
388 PRK13184 pknD serine/threonine 92.0 1.3 2.7E-05 49.8 11.2 101 19-120 480-590 (932)
389 COG5191 Uncharacterized conser 92.0 0.27 5.7E-06 47.0 5.0 81 8-88 101-182 (435)
390 PF12862 Apc5: Anaphase-promot 92.0 0.84 1.8E-05 36.1 7.3 54 60-113 10-72 (94)
391 KOG2396 HAT (Half-A-TPR) repea 91.8 1 2.2E-05 46.0 9.1 77 12-88 103-180 (568)
392 PF10373 EST1_DNA_bind: Est1 D 91.8 0.61 1.3E-05 44.7 7.7 62 67-128 1-62 (278)
393 PF04781 DUF627: Protein of un 91.6 1.5 3.3E-05 35.5 8.4 72 54-125 2-87 (111)
394 COG3914 Spy Predicted O-linked 91.6 1.4 3E-05 45.9 10.1 97 31-127 48-147 (620)
395 PF12862 Apc5: Anaphase-promot 91.6 1 2.2E-05 35.6 7.4 56 22-77 6-70 (94)
396 COG3118 Thioredoxin domain-con 91.5 3.5 7.6E-05 39.5 11.9 97 10-106 164-296 (304)
397 PF07720 TPR_3: Tetratricopept 91.3 0.7 1.5E-05 29.3 5.0 32 15-46 2-35 (36)
398 KOG0529 Protein geranylgeranyl 91.3 2.6 5.7E-05 42.1 11.2 102 28-129 89-196 (421)
399 PF10579 Rapsyn_N: Rapsyn N-te 91.2 2.1 4.5E-05 32.4 8.1 61 50-110 8-71 (80)
400 cd07378 MPP_ACP5 Homo sapiens 90.9 0.41 9E-06 46.0 5.5 71 223-294 2-83 (277)
401 PF10516 SHNi-TPR: SHNi-TPR; 90.9 0.51 1.1E-05 30.4 4.0 29 83-111 2-30 (38)
402 PF04910 Tcf25: Transcriptiona 90.8 1.6 3.5E-05 43.8 9.7 103 8-110 34-167 (360)
403 COG3629 DnrI DNA-binding trans 90.5 1.6 3.6E-05 41.7 8.9 80 30-111 137-216 (280)
404 cd07410 MPP_CpdB_N Escherichia 90.1 0.44 9.6E-06 46.0 4.9 20 398-417 209-229 (277)
405 KOG2300 Uncharacterized conser 90.0 12 0.00027 38.3 14.7 98 12-112 365-475 (629)
406 PF07079 DUF1347: Protein of u 90.0 2.5 5.3E-05 42.8 9.8 50 21-71 469-518 (549)
407 COG3629 DnrI DNA-binding trans 89.9 1.8 3.9E-05 41.5 8.6 76 64-143 137-212 (280)
408 PF09986 DUF2225: Uncharacteri 89.8 4 8.7E-05 37.7 10.7 80 10-89 114-207 (214)
409 PF07720 TPR_3: Tetratricopept 89.7 1.2 2.7E-05 28.2 5.0 31 84-114 3-35 (36)
410 KOG4151 Myosin assembly protei 89.7 1.6 3.5E-05 46.9 8.8 118 12-129 51-174 (748)
411 KOG1310 WD40 repeat protein [G 89.4 1.1 2.3E-05 46.0 7.0 86 55-142 381-469 (758)
412 PF11207 DUF2989: Protein of u 89.4 1.6 3.5E-05 39.5 7.4 81 21-103 113-199 (203)
413 PF10373 EST1_DNA_bind: Est1 D 89.3 1.1 2.4E-05 42.9 7.0 62 33-94 1-62 (278)
414 KOG2041 WD40 repeat protein [G 89.2 7.8 0.00017 41.4 13.0 86 10-107 792-877 (1189)
415 COG3898 Uncharacterized membra 88.5 11 0.00025 37.5 13.0 51 25-75 165-215 (531)
416 COG2129 Predicted phosphoester 88.4 20 0.00044 33.0 16.8 211 223-464 5-225 (226)
417 PF10516 SHNi-TPR: SHNi-TPR; 88.3 0.87 1.9E-05 29.3 3.6 28 50-77 3-30 (38)
418 COG0420 SbcD DNA repair exonuc 88.2 1.1 2.3E-05 45.7 6.4 50 250-299 41-93 (390)
419 KOG2422 Uncharacterized conser 88.2 23 0.00051 37.1 15.5 112 28-140 252-400 (665)
420 KOG0890 Protein kinase of the 88.2 6.6 0.00014 47.5 13.1 118 8-127 1664-1800(2382)
421 PRK15180 Vi polysaccharide bio 88.2 0.61 1.3E-05 47.2 4.3 112 11-122 320-431 (831)
422 PF11207 DUF2989: Protein of u 88.1 5.5 0.00012 36.1 9.9 70 65-138 123-198 (203)
423 KOG0985 Vesicle coat protein c 88.0 20 0.00042 40.3 15.4 62 11-77 1101-1162(1666)
424 PF07721 TPR_4: Tetratricopept 87.9 0.81 1.8E-05 26.5 3.1 22 84-105 3-24 (26)
425 PF07721 TPR_4: Tetratricopept 87.8 0.66 1.4E-05 26.9 2.7 22 50-71 3-24 (26)
426 PF14863 Alkyl_sulf_dimr: Alky 87.7 2.2 4.7E-05 36.5 6.8 51 48-98 70-120 (141)
427 PF08631 SPO22: Meiosis protei 87.7 13 0.00027 35.9 13.1 99 24-122 3-127 (278)
428 KOG3807 Predicted membrane pro 87.3 17 0.00036 35.5 13.0 94 18-113 188-306 (556)
429 COG0790 FOG: TPR repeat, SEL1 87.0 10 0.00022 36.6 12.2 124 15-142 74-215 (292)
430 cd07412 MPP_YhcR_N Bacillus su 87.0 0.85 1.8E-05 44.3 4.5 66 224-294 3-88 (288)
431 KOG4814 Uncharacterized conser 87.0 4.6 0.0001 42.6 9.8 77 50-126 356-438 (872)
432 cd07408 MPP_SA0022_N Staphyloc 86.8 0.76 1.6E-05 43.8 4.0 64 224-293 3-81 (257)
433 PLN02533 probable purple acid 86.7 0.94 2E-05 46.6 4.9 25 395-419 311-335 (427)
434 PF12968 DUF3856: Domain of Un 86.0 9 0.00019 31.6 9.0 64 14-77 55-129 (144)
435 KOG1839 Uncharacterized protei 85.9 5.8 0.00013 45.3 10.6 104 9-112 968-1087(1236)
436 KOG3617 WD40 and TPR repeat-co 85.8 10 0.00022 41.4 11.7 93 48-142 858-991 (1416)
437 COG4649 Uncharacterized protei 85.8 21 0.00045 31.7 11.7 58 18-75 62-121 (221)
438 KOG1914 mRNA cleavage and poly 85.0 4.8 0.0001 41.7 8.6 101 7-109 13-114 (656)
439 KOG2300 Uncharacterized conser 84.8 21 0.00045 36.7 12.8 130 13-144 6-153 (629)
440 KOG1258 mRNA processing protei 84.7 37 0.00081 35.8 15.1 122 10-131 293-415 (577)
441 COG3855 Fbp Uncharacterized pr 84.4 5.5 0.00012 40.2 8.6 119 304-432 376-559 (648)
442 PF10345 Cohesin_load: Cohesin 83.5 47 0.001 36.0 16.3 112 8-120 53-179 (608)
443 COG2909 MalT ATP-dependent tra 83.3 38 0.00083 37.5 14.9 100 13-112 414-527 (894)
444 PF14582 Metallophos_3: Metall 83.2 1.4 3.1E-05 40.4 3.7 73 223-296 7-104 (255)
445 cd07411 MPP_SoxB_N Thermus the 82.9 2.4 5.1E-05 40.6 5.5 12 405-416 206-217 (264)
446 KOG1839 Uncharacterized protei 82.6 5.5 0.00012 45.5 8.7 128 12-142 930-1081(1236)
447 COG3947 Response regulator con 82.5 5.5 0.00012 38.1 7.4 55 54-108 285-339 (361)
448 cd02682 MIT_AAA_Arch MIT: doma 81.6 9.2 0.0002 28.7 7.0 32 12-43 4-35 (75)
449 smart00386 HAT HAT (Half-A-TPR 81.4 3.9 8.5E-05 24.2 4.3 29 28-56 1-29 (33)
450 COG4455 ImpE Protein of avirul 81.3 13 0.00027 34.3 8.9 61 56-116 9-69 (273)
451 cd07409 MPP_CD73_N CD73 ecto-5 81.2 2.9 6.2E-05 40.4 5.4 19 399-417 198-217 (281)
452 KOG3616 Selective LIM binding 80.6 15 0.00033 39.6 10.4 202 13-243 660-875 (1636)
453 COG4941 Predicted RNA polymera 80.5 12 0.00026 36.6 9.0 95 29-124 311-407 (415)
454 KOG0529 Protein geranylgeranyl 80.3 44 0.00094 33.7 13.1 105 26-130 40-159 (421)
455 COG1768 Predicted phosphohydro 80.1 3.7 8E-05 36.2 5.0 94 223-328 18-114 (230)
456 COG4455 ImpE Protein of avirul 79.5 52 0.0011 30.4 12.2 62 21-82 8-69 (273)
457 KOG0686 COP9 signalosome, subu 79.3 14 0.00031 37.0 9.3 91 15-105 151-252 (466)
458 KOG2581 26S proteasome regulat 79.1 26 0.00057 35.2 11.0 103 14-116 169-281 (493)
459 PF11817 Foie-gras_1: Foie gra 79.0 22 0.00047 33.6 10.5 75 31-105 155-241 (247)
460 COG3947 Response regulator con 78.8 7.5 0.00016 37.2 7.0 60 16-75 281-340 (361)
461 PF14863 Alkyl_sulf_dimr: Alky 78.6 7.4 0.00016 33.3 6.4 50 82-131 70-119 (141)
462 PF04053 Coatomer_WDAD: Coatom 77.6 16 0.00035 37.7 9.8 74 19-108 300-373 (443)
463 KOG1914 mRNA cleavage and poly 77.6 26 0.00055 36.6 10.8 73 38-111 10-82 (656)
464 cd00842 MPP_ASMase acid sphing 77.3 5.9 0.00013 38.5 6.3 73 225-297 41-125 (296)
465 KOG0546 HSP90 co-chaperone CPR 76.5 1.9 4.1E-05 42.2 2.5 82 15-96 276-357 (372)
466 KOG0890 Protein kinase of the 76.0 1.1E+02 0.0024 37.9 16.6 65 46-112 1668-1732(2382)
467 PF15015 NYD-SP12_N: Spermatog 75.9 15 0.00033 37.0 8.5 82 55-138 183-282 (569)
468 PF10255 Paf67: RNA polymerase 75.8 4.4 9.4E-05 41.1 4.9 61 50-111 124-193 (404)
469 smart00386 HAT HAT (Half-A-TPR 75.7 8.5 0.00018 22.7 4.6 27 97-123 2-28 (33)
470 PF09670 Cas_Cas02710: CRISPR- 75.7 55 0.0012 33.1 12.9 63 15-77 132-198 (379)
471 KOG2863 RNA lariat debranching 73.2 3.9 8.5E-05 40.0 3.6 73 223-296 2-90 (456)
472 PF11817 Foie-gras_1: Foie gra 72.7 20 0.00044 33.8 8.5 62 14-75 178-245 (247)
473 PF10255 Paf67: RNA polymerase 72.0 20 0.00042 36.5 8.5 96 18-114 126-231 (404)
474 PRK13184 pknD serine/threonine 71.9 32 0.0007 39.0 10.9 103 15-118 513-627 (932)
475 cd02682 MIT_AAA_Arch MIT: doma 71.5 23 0.00049 26.7 6.6 32 100-131 31-62 (75)
476 PF10952 DUF2753: Protein of u 71.0 25 0.00054 29.2 7.2 60 16-75 3-77 (140)
477 PF04212 MIT: MIT (microtubule 70.7 11 0.00024 27.6 5.0 32 12-43 3-34 (69)
478 KOG2041 WD40 repeat protein [G 70.5 30 0.00065 37.2 9.5 81 48-142 796-876 (1189)
479 cd07406 MPP_CG11883_N Drosophi 70.5 8.4 0.00018 36.6 5.4 58 231-293 20-82 (257)
480 PRK09419 bifunctional 2',3'-cy 70.2 6.3 0.00014 46.2 5.2 65 223-293 662-735 (1163)
481 cd02681 MIT_calpain7_1 MIT: do 70.1 11 0.00024 28.4 4.8 32 12-43 4-35 (76)
482 PRK15490 Vi polysaccharide bio 69.4 79 0.0017 33.8 12.5 90 15-106 6-98 (578)
483 cd02683 MIT_1 MIT: domain cont 69.1 45 0.00097 25.2 8.0 32 12-43 4-35 (77)
484 KOG3783 Uncharacterized conser 69.1 53 0.0012 34.3 10.8 66 50-115 451-524 (546)
485 TIGR03504 FimV_Cterm FimV C-te 68.8 21 0.00046 23.7 5.4 25 86-110 3-27 (44)
486 TIGR03504 FimV_Cterm FimV C-te 68.6 11 0.00023 25.1 3.9 25 18-42 3-27 (44)
487 PF10345 Cohesin_load: Cohesin 67.5 65 0.0014 34.9 12.1 83 31-114 38-131 (608)
488 KOG2422 Uncharacterized conser 67.1 1.5E+02 0.0032 31.5 13.4 101 8-108 278-404 (665)
489 PF07219 HemY_N: HemY protein 65.6 32 0.00069 27.8 7.1 46 14-59 59-104 (108)
490 PF12854 PPR_1: PPR repeat 65.0 17 0.00036 22.5 4.1 25 48-72 7-31 (34)
491 KOG1258 mRNA processing protei 64.8 2E+02 0.0043 30.6 14.1 116 11-126 363-485 (577)
492 TIGR00282 metallophosphoestera 64.7 15 0.00032 35.2 5.6 68 223-295 2-72 (266)
493 cd07407 MPP_YHR202W_N Saccharo 64.1 10 0.00022 36.7 4.5 19 399-417 210-230 (282)
494 KOG3339 Predicted glycosyltran 64.0 24 0.00052 31.4 6.2 87 251-342 40-143 (211)
495 PF04053 Coatomer_WDAD: Coatom 62.9 59 0.0013 33.7 10.1 72 22-106 326-397 (443)
496 cd02680 MIT_calpain7_2 MIT: do 62.8 17 0.00036 27.4 4.4 32 12-43 4-35 (75)
497 KOG2476 Uncharacterized conser 62.8 18 0.00039 36.8 5.9 68 223-291 7-75 (528)
498 PF04190 DUF410: Protein of un 60.6 1.4E+02 0.003 28.5 11.5 98 9-106 5-114 (260)
499 PF12854 PPR_1: PPR repeat 60.4 23 0.0005 21.8 4.2 27 81-107 6-32 (34)
500 COG2909 MalT ATP-dependent tra 60.4 1.5E+02 0.0032 33.2 12.6 111 1-111 445-568 (894)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-87 Score=587.75 Aligned_cols=284 Identities=42% Similarity=0.753 Sum_probs=275.4
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011465 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
+++.++.+++...+.+.++..+|.+++++|.+|+++..++.| +.|+||||||+.||+.+|+..|-++++ +|+|||
T Consensus 3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG 77 (303)
T KOG0372|consen 3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG 77 (303)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence 677889999999999999999999999999999999999987 999999999999999999998887766 599999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhc-HHHHHHHHHHhccccccceeCCcEE
Q 011465 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF 336 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~-~~~~~~~~~~f~~lPl~~~i~~~~~ 336 (485)
||||||.+|+|+++||++||++||++|+|||||||++.++..|||++||.+||| ..+|+.++++|+.||++|+|++++|
T Consensus 78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif 157 (303)
T KOG0372|consen 78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF 157 (303)
T ss_pred chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence 999999999999999999999999999999999999999999999999999996 5899999999999999999999999
Q ss_pred EEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccc
Q 011465 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
|||||+ ||.+.++++|+.++|.++.|+++.++|||||||.+..||..||||+|+.||.+++++|++.||+++|+|+||.
T Consensus 158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQL 236 (303)
T KOG0372|consen 158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQL 236 (303)
T ss_pred EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCC
Q 011465 417 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 468 (485)
Q Consensus 417 ~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~ 468 (485)
+++||++.|+++|+|||||||||+.++|.||||.| +++....|..|++.|.
T Consensus 237 v~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~l-de~~~~~F~vFeaa~~ 287 (303)
T KOG0372|consen 237 VMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILEL-DEDLDKDFRVFEAAPQ 287 (303)
T ss_pred HHhhHHHhcCCceEEEecCCchhhhcCChHHheee-ccccCcceEeeecchh
Confidence 99999999999999999999999999999999999 8888999999999873
No 2
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2e-80 Score=601.52 Aligned_cols=470 Identities=65% Similarity=1.092 Sum_probs=442.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
+..+...|+.++..++++.|+..|.+||+++|+.+..+.+++.++.+.+++..|+..+.+|++.+|....+|++.|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccc-ccccccc-cCCCCCCccccCC
Q 011465 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIE-VEPQYSGARIEGD 171 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~-~~~~~l~-~~~~~~~~~l~~~ 171 (485)
.++++.+|...|++...+.|+++.+...+..|.....+..|++|+..-.....+.... ....... +...+.+..+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~~~i~~~y~g~~le~~ 163 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDMDLIESDYSGPVLEDH 163 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccccccccccCCcccccc
Confidence 9999999999999999999999999999999999999888999888766322222222 2333333 5667777777775
Q ss_pred cccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCC
Q 011465 172 VITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEEN 251 (485)
Q Consensus 172 ~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~ 251 (485)
.++.+++..+++.+..+..++...+..++..+..++.+.|+++++..|....+.++||+||++.++.++|+..|.|+.+.
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~ 243 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN 243 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc
Confidence 68999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhcccccccee
Q 011465 252 PYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL 331 (485)
Q Consensus 252 ~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i 331 (485)
.|+|.||+||||..|.|++..++..|+.+|+++|++|||||+..|+..|||.+|+..+|.++.+..+.++|..||++..|
T Consensus 244 ~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i 323 (476)
T KOG0376|consen 244 PYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLI 323 (476)
T ss_pred cccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEE
Q 011465 332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVV 411 (485)
Q Consensus 332 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ii 411 (485)
+++++.+|||+|+++..++++|++|.|+..|++.+.++++|||||....|..+|.||.|..||++++++||+.||++.||
T Consensus 324 ~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~ 403 (476)
T KOG0376|consen 324 NNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKII 403 (476)
T ss_pred cCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCccccchhhhc
Q 011465 412 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM 483 (485)
Q Consensus 412 r~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
|||+..+.||++.|+|+|+|||||||||+.++|.||++.++.+++++.+++|+++|+|.++||+||++.+++
T Consensus 404 rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma~~ns~~~~ 475 (476)
T KOG0376|consen 404 RSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMAYANSLLQW 475 (476)
T ss_pred hccccCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcccccccccC
Confidence 999999999999999999999999999999999999999977899999999999999999999999998875
No 3
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=5.8e-79 Score=588.40 Aligned_cols=314 Identities=71% Similarity=1.234 Sum_probs=299.2
Q ss_pred CCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHH
Q 011465 164 SGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL 243 (485)
Q Consensus 164 ~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~ 243 (485)
.++++....++.+.++++++.+++...++..++.++|.++.+++.++|+++++..|...+++|+|||||++.+|.++|+.
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 2 DGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 34566666689999999999999998999999999999999999999999999877666899999999999999999999
Q ss_pred cCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhc
Q 011465 244 NGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFC 323 (485)
Q Consensus 244 ~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~ 323 (485)
.|+++.++.|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..|+..+|+..+|..+.++|+
T Consensus 82 ~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~ 161 (316)
T cd07417 82 NGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFN 161 (316)
T ss_pred cCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHH
Confidence 99988777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHH
Q 011465 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ 403 (485)
Q Consensus 324 ~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~ 403 (485)
+||+++++++++||||||||++...++++|++++|+.+++.+++++|+|||||....++.+|+||.|+.||++++++||+
T Consensus 162 ~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~ 241 (316)
T cd07417 162 WLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLE 241 (316)
T ss_pred hchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHH
Confidence 99999999999999999998788999999999999998888999999999999988899999999999999999999999
Q ss_pred HCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-CCceeEEEEeccCCCCCCCccccc
Q 011465 404 DNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-TLKPNIVTFAAVPHPDVKPMAYAN 478 (485)
Q Consensus 404 ~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 478 (485)
+||+++||||||++++||++.++++|+|||||||||+..+|.||+|.| ++ +++++|++|++.|+|.+.||+||+
T Consensus 242 ~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (316)
T cd07417 242 ENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRI-TGSDLKPKFTQFEAVPHPNVKPMAYAN 316 (316)
T ss_pred HcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEE-eCCCceeeeEeccCCCCCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999 55 899999999999999999999984
No 4
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-79 Score=531.47 Aligned_cols=287 Identities=38% Similarity=0.690 Sum_probs=276.7
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 011465 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (485)
Q Consensus 177 ~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vfl 256 (485)
.++++++..++++.+++.++..+|+..++++..+.++..++.| +.|+|||||||.||+++|+..|-.|++ +|||+
T Consensus 5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~t-nYiFm 79 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDT-NYIFM 79 (306)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCc-ceEEe
Confidence 3778899999999999999999999999999999999988876 999999999999999999998877755 59999
Q ss_pred ccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH-HHHHHHHHHhccccccceeCCcE
Q 011465 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKV 335 (485)
Q Consensus 257 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~-~~~~~~~~~f~~lPl~~~i~~~~ 335 (485)
|||||||..|+|+..+|+.||.+||.+|.|||||||++.++..|||++||..|||. ++|+.+.++|+.|++||+|++++
T Consensus 80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v 159 (306)
T KOG0373|consen 80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV 159 (306)
T ss_pred ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence 99999999999999999999999999999999999999999999999999999975 89999999999999999999999
Q ss_pred EEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeecc
Q 011465 336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE 415 (485)
Q Consensus 336 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~ 415 (485)
+|||||+ ||++.++|+|+.|.|.++.|.++.+|||+||||.+.+.|..|+||+||.||.+++.+|+..|++++|.|+||
T Consensus 160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQ 238 (306)
T KOG0373|consen 160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQ 238 (306)
T ss_pred EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcEEecCCe-EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCC
Q 011465 416 VKDEGYEIEHDGK-LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 470 (485)
Q Consensus 416 ~~~~G~~~~~~~~-~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
.+++||++.|+.| ++|||||||||..++|.|+||.+ ++++++++..|.++|..+
T Consensus 239 LV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~-d~~~~r~~k~F~avpd~~ 293 (306)
T KOG0373|consen 239 LVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSF-DDNLERETKIFSAVPDNS 293 (306)
T ss_pred HHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEe-cccCCccceeeeecCCcc
Confidence 9999999999998 99999999999999999999999 899999999999987644
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=3.6e-76 Score=566.77 Aligned_cols=289 Identities=44% Similarity=0.813 Sum_probs=267.4
Q ss_pred ccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCC
Q 011465 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (485)
Q Consensus 173 l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~ 252 (485)
++.+.++.+++.+.+...++..++..+|.++.++|.++|+++++..+...+++|+|||||++.+|.++|+..|+|+.+++
T Consensus 2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~ 81 (321)
T cd07420 2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP 81 (321)
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence 56778999999999999999999999999999999999999999876666799999999999999999999999877778
Q ss_pred eEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhc---HHHHHHHHHHhccccccc
Q 011465 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH 329 (485)
Q Consensus 253 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~---~~~~~~~~~~f~~lPl~~ 329 (485)
|+|||||||||++|+||+.+|++||+.+|++|++||||||++.++..|||.+||..+|+ ..+|..+.++|++||+||
T Consensus 82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa 161 (321)
T cd07420 82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT 161 (321)
T ss_pred EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred eeCCcEEEEeCccccCCCCChhhhhhccCCC-----CCCC----------------------CCcccccccCCCCCCCC-
Q 011465 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPPE----------------------EGLMCELLWSDPQPLPG- 381 (485)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~~----------------------~~~~~~llw~dp~~~~~- 381 (485)
+|++++||||||| ++ ..++++|++|+|+. .|+. .++++|+|||||....+
T Consensus 162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~ 239 (321)
T cd07420 162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239 (321)
T ss_pred EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence 9999999999999 44 57899999998842 1111 14688999999997766
Q ss_pred CCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEE
Q 011465 382 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIV 461 (485)
Q Consensus 382 ~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~ 461 (485)
+.+++||.|+.||++++++||++||+++||||||++++||++.++++|+|||||||||+..+|.||+|.| +++++++|+
T Consensus 240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i-~~~~~~~f~ 318 (321)
T cd07420 240 KPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKL-GPDLTPHFV 318 (321)
T ss_pred CccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEE-CCCCceeEE
Confidence 5677999999999999999999999999999999999999999999999999999999999999999999 888999999
Q ss_pred EEe
Q 011465 462 TFA 464 (485)
Q Consensus 462 ~~~ 464 (485)
+|.
T Consensus 319 ~~~ 321 (321)
T cd07420 319 QYQ 321 (321)
T ss_pred EeC
Confidence 883
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=3e-73 Score=542.39 Aligned_cols=283 Identities=42% Similarity=0.765 Sum_probs=269.2
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011465 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
++.+++.+.+...++.+++..+|+++.+++.++|.++++..| ++|+||+||++.+|.++|+..++++. +.|+|||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG 76 (285)
T cd07415 2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG 76 (285)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence 456788888888899999999999999999999999998765 99999999999999999999988765 4699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH-HHHHHHHHHhccccccceeCCcEE
Q 011465 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~-~~~~~~~~~f~~lPl~~~i~~~~~ 336 (485)
||||||++|+||+.++++||+.+|++|++||||||.+.++..|||.+||..+|+. .+|..+.++|+.||++|++++++|
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~ 156 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF 156 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 899999999999999999999999
Q ss_pred EEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccc
Q 011465 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
|||||| +|...++++|++++||.+++.+++++|+|||||....+|.+++||.|+.||++++++||++||+++||||||+
T Consensus 157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 235 (285)
T cd07415 157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQL 235 (285)
T ss_pred EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCcc
Confidence 999999 8899999999999999988889999999999999888999999999999999999999999999999999999
Q ss_pred cccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccC
Q 011465 417 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 467 (485)
Q Consensus 417 ~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~ 467 (485)
+++||++.++++|+|||||||||+..+|.||+|.| +++++++|++|++.|
T Consensus 236 ~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i-~~~~~~~~~~~~~~~ 285 (285)
T cd07415 236 VMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVFEAAP 285 (285)
T ss_pred ccceEEEecCCcEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeccCC
Confidence 99999999999999999999999999999999999 888999999998654
No 7
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=4e-75 Score=537.17 Aligned_cols=294 Identities=41% Similarity=0.755 Sum_probs=273.3
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011465 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
.+-+.+++...++++++.+.+++.++..+|+++++++++..| +.|+||||||+.||+++|+..|-|. +..|+|||
T Consensus 48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~PA-~t~YLFLG 122 (517)
T KOG0375|consen 48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFLG 122 (517)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCcc-cceeEeec
Confidence 455778888899999999999999999999999999999987 9999999999999999999977665 45699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEE
Q 011465 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~ 337 (485)
||||||.+|+||+++|++||+.||+.++|||||||++.++.+|.|..||..||..++|+++.+.|++|||||+.++++||
T Consensus 123 DYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQflC 202 (517)
T KOG0375|consen 123 DYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFLC 202 (517)
T ss_pred cccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCC-------C-CcCCCCCccccCHHHHHHHHHHCCCcE
Q 011465 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------R-GPSKRGVGLSFGADVTKRFLQDNSLDL 409 (485)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~-------~-~~~~rg~~~~fg~~~~~~fl~~~~~~~ 409 (485)
||||+ ||.+.+++||++++|+.+||..+.+||||||||...-| | .++.||+++.|...++++||+.||+-.
T Consensus 203 VHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLS 281 (517)
T KOG0375|consen 203 VHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLS 281 (517)
T ss_pred ecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchh
Confidence 99999 99999999999999999999999999999999987543 2 468999999999999999999999999
Q ss_pred EEeeccccccCcEEecC------CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCccccchhhhc
Q 011465 410 VVRSHEVKDEGYEIEHD------GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM 483 (485)
Q Consensus 410 iir~h~~~~~G~~~~~~------~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
|||+||.++.||++... +.+|||||||||-+.++|+||||..+++ .+.|.||.++|+|.|.| |||-.
T Consensus 282 IiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnN--VMNIRQFncSPHPYWLP-----nFMDV 354 (517)
T KOG0375|consen 282 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENN--VMNIRQFNCSPHPYWLP-----NFMDV 354 (517)
T ss_pred hhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhcc--cceeeccCCCCCCcccc-----chhhh
Confidence 99999999999998764 5789999999999999999999999544 44588999999999998 55544
Q ss_pred c
Q 011465 484 F 484 (485)
Q Consensus 484 ~ 484 (485)
|
T Consensus 355 F 355 (517)
T KOG0375|consen 355 F 355 (517)
T ss_pred e
Confidence 4
No 8
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1e-72 Score=541.81 Aligned_cols=273 Identities=38% Similarity=0.774 Sum_probs=260.3
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011465 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (485)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~ 269 (485)
.++++++..+|+++.+++.++|.++++..+ +.++||+||++.+|.++|+..++++.. .|||||||||||++|+||
T Consensus 31 ~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~~-~ylfLGDyVDRG~~s~ev 105 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPES-NYLFLGDYVDRGKQSLET 105 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCcc-eEEEeceecCCCCCcHHH
Confidence 578899999999999999999999999765 999999999999999999999988754 699999999999999999
Q ss_pred HHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCC
Q 011465 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (485)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~ 349 (485)
+.+|+++|+.+|.+|++||||||.+.++..|||..||..+|+..+|..+.++|+.||+||+|++++||||||| +|...+
T Consensus 106 l~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI-~p~~~~ 184 (320)
T PTZ00480 106 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGL-SPELSN 184 (320)
T ss_pred HHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhheecCcEEEEcCCc-CcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hhhhhhccCCCCCCCCCcccccccCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCe
Q 011465 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK 428 (485)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~ 428 (485)
+++|++++||.+.+++++++|+|||||... .+|.+|+||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus 185 l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~ 264 (320)
T PTZ00480 185 LEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQ 264 (320)
T ss_pred HHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCc
Confidence 999999999998889999999999999875 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011465 429 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 469 (485)
Q Consensus 429 ~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
|+|||||||||+..+|.||+|.| ++++++.|.+|++.++.
T Consensus 265 ~iTvFSa~~Y~~~~~N~ga~l~i-~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 265 LVTLFSAPNYCGEFDNAGSMMTI-DESLMCSFQILKPAEQG 304 (320)
T ss_pred EEEEeCCcccCCCCCccEEEEEE-CCCCcEeEEEecCCccc
Confidence 99999999999999999999999 88999999999865543
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.8e-72 Score=539.39 Aligned_cols=285 Identities=40% Similarity=0.692 Sum_probs=268.6
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011465 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
++.+++.+.+...++++++.++|+++.+++.++|.++++..| +.|+||+||++.+|.++|+..+.++. +.|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~~-~~~lfLG 77 (303)
T PTZ00239 3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIPN-ANYIFIG 77 (303)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEee
Confidence 566788888888899999999999999999999999999765 99999999999999999999887764 4699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH-HHHHHHHHHhccccccceeCCcEE
Q 011465 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~-~~~~~~~~~f~~lPl~~~i~~~~~ 336 (485)
||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||.+|+..+|+. .+|..+.++|+.||++|+|++++|
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~ 157 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL 157 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 799999999999999999999999
Q ss_pred EEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccc
Q 011465 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
|||||| +|...++++|+.++|+.+++.++.++|+|||||....+|.+++||.|+.||++++++||++||+++||||||+
T Consensus 158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~ 236 (303)
T PTZ00239 158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQL 236 (303)
T ss_pred EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChh
Confidence 999999 8899999999999999988889999999999999888999999999999999999999999999999999999
Q ss_pred cccCcEEecCC-eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011465 417 KDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 469 (485)
Q Consensus 417 ~~~G~~~~~~~-~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
+++||++.+++ +|+|||||||||+..+|.||+|.| ++++++.|++|++++..
T Consensus 237 ~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i-~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 237 VMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCL-DENLQQTWKTFKEVPES 289 (303)
T ss_pred hccceEEEeCCCeEEEEECCCcccCCCCceEEEEEE-CCCCcEeeEEeeCCCcc
Confidence 99999987755 599999999999999999999999 88999999999997653
No 10
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=3.2e-72 Score=541.08 Aligned_cols=288 Identities=42% Similarity=0.758 Sum_probs=269.6
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011465 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
++-+++++.+...++++++.++|+++.+++.++|.++++..+ +.|+|||||++.+|.++|+..+.++. +.|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~~-~~ylFLG 77 (305)
T cd07416 3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPAN-TRYLFLG 77 (305)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEEC
Confidence 456788888888999999999999999999999999999765 99999999999999999999888764 5799999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEE
Q 011465 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~ 337 (485)
||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+.++|..+.++|+.||+++++++++||
T Consensus 78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~ 157 (305)
T cd07416 78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC 157 (305)
T ss_pred CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCC-------CCCc-CCCCCccccCHHHHHHHHHHCCCcE
Q 011465 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLDL 409 (485)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~~~~fg~~~~~~fl~~~~~~~ 409 (485)
||||| +|...++++|++++|+.+++..++++|+|||||.... +|.+ ++||.|+.||++++++||++||+++
T Consensus 158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~ 236 (305)
T cd07416 158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLS 236 (305)
T ss_pred EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeE
Confidence 99999 8899999999999999988889999999999997643 3555 5999999999999999999999999
Q ss_pred EEeeccccccCcEEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCC
Q 011465 410 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP 473 (485)
Q Consensus 410 iir~h~~~~~G~~~~~~~------~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
||||||++++||++.+++ +|+|||||||||+..+|.||+|.| +++ ...|.+|.++|+|.+.|
T Consensus 237 iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i-~~~-~~~~~~~~~~~~~~~~~ 304 (305)
T cd07416 237 IIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLP 304 (305)
T ss_pred EEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEE-cCC-cceEEEecCCCCCCCCC
Confidence 999999999999999886 999999999999999999999999 555 46899999999999876
No 11
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=2.3e-71 Score=540.29 Aligned_cols=302 Identities=42% Similarity=0.760 Sum_probs=273.2
Q ss_pred ccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHH
Q 011465 173 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (485)
Q Consensus 173 l~~~~l~~lie~l~~~----------~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~ 242 (485)
++.+.++.++..++.. ..++.+++.++|.++.++|.++|+++++..+...+++|+|||||++.+|.++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~ 86 (377)
T cd07418 7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE 86 (377)
T ss_pred cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 6888999999998766 346788999999999999999999999986555579999999999999999999
Q ss_pred HcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH---HHHHHHH
Q 011465 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA 319 (485)
Q Consensus 243 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~---~~~~~~~ 319 (485)
..|+++.+..|||||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+. .+|+.+.
T Consensus 87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~ 166 (377)
T cd07418 87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL 166 (377)
T ss_pred HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence 9999877667999999999999999999999999999999999999999999999999999999999964 7999999
Q ss_pred HHhccccccceeCCcEEEEeCccc--------------------------cCCCCChhhhhhccCC-CCCCCCC---ccc
Q 011465 320 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC 369 (485)
Q Consensus 320 ~~f~~lPl~~~i~~~~~~vHgGi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~ 369 (485)
++|++||++++|++++|||||||| +|.+.++++|++++|+ .+++..+ +++
T Consensus 167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~ 246 (377)
T cd07418 167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG 246 (377)
T ss_pred HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence 999999999999999999999994 3446789999999997 4666554 578
Q ss_pred ccccCCCCCCCCCCcC-CCCCccccCHHHHHHHHHHCCCcEEEeeccc------------cccCcEEecC---CeEEEEe
Q 011465 370 ELLWSDPQPLPGRGPS-KRGVGLSFGADVTKRFLQDNSLDLVVRSHEV------------KDEGYEIEHD---GKLITVF 433 (485)
Q Consensus 370 ~llw~dp~~~~~~~~~-~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~------------~~~G~~~~~~---~~~~tvf 433 (485)
|||||||....|+.++ +||.|+.||++++++||++||+++||||||+ +++||++.++ ++|+|||
T Consensus 247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvF 326 (377)
T cd07418 247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLF 326 (377)
T ss_pred eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEe
Confidence 9999999988887765 8999999999999999999999999999996 6799999987 9999999
Q ss_pred cCCCCC------CCCCCeEEEEEEecCC-CceeEEEEecc-CCCCCCCc
Q 011465 434 SAPNYC------DQMGNKGAFIRFEAPT-LKPNIVTFAAV-PHPDVKPM 474 (485)
Q Consensus 434 sa~~y~------~~~~n~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 474 (485)
|||||| +.++|.||+++|+.++ .+++|++|+++ |+|..-|+
T Consensus 327 Sa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T cd07418 327 SAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVKPRPKANPY 375 (377)
T ss_pred cCCccccccccccccCcceEEEEEecCCCCCccceEeeccCCCCCCCcC
Confidence 999999 5789999999996544 58999999998 88887765
No 12
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.7e-72 Score=540.36 Aligned_cols=269 Identities=42% Similarity=0.800 Sum_probs=260.1
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcC-CCCCCCCeEEcccccCCCCChHHH
Q 011465 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEV 269 (485)
Q Consensus 191 l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~-~~~~~~~~vflGD~vdrG~~s~e~ 269 (485)
+++.++.+++..+.+++..+|.+++++.| +.|+||+|||+.||+++|...| +|+.. +|||||||||||++|+||
T Consensus 32 l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~~-~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 32 LSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPDQ-NYVFLGDYVDRGKQSLET 106 (331)
T ss_pred ccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCcc-cEEEecccccCCccceEE
Confidence 67788999999999999999999999987 9999999999999999999999 88655 699999999999999999
Q ss_pred HHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhc-HHHHHHHHHHhccccccceeCCcEEEEeCccccCCCC
Q 011465 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 348 (485)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~-~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~ 348 (485)
+.+|+++|++||++|++||||||++.+|..|||++||.++|+ ..+|..|++.|.+||++|+|+++++|+|||| ||.+.
T Consensus 107 i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l~ 185 (331)
T KOG0374|consen 107 ICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHLK 185 (331)
T ss_pred eehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhhc
Confidence 999999999999999999999999999999999999999999 6999999999999999999999999999999 99999
Q ss_pred ChhhhhhccCCCCCCCCCcccccccCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCC
Q 011465 349 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDG 427 (485)
Q Consensus 349 ~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~ 427 (485)
++++|+.|.||.++++.++++|||||||... .||.++.||.++.||++++++||+++++++||||||++.+||+++.++
T Consensus 186 ~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r 265 (331)
T KOG0374|consen 186 SLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGR 265 (331)
T ss_pred ChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCc
Confidence 9999999999999999999999999999987 699999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecc
Q 011465 428 KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 466 (485)
Q Consensus 428 ~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 466 (485)
|++||||||+|||.+.|.||+|.| ++++.+.|....+.
T Consensus 266 ~lvTIFSAP~Ycg~~~n~gavm~V-d~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 266 KLVTIFSAPNYCGEFDNAGAVMRV-DKNLKCSFVILRPE 303 (331)
T ss_pred eEEEEecCchhccccCCceEEEEE-CCCCeEEEEEeccc
Confidence 999999999999999999999999 99999999988874
No 13
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=2.7e-71 Score=529.83 Aligned_cols=269 Identities=40% Similarity=0.776 Sum_probs=257.2
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011465 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (485)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~ 269 (485)
.++.+++..+|.++.+++.++|.++++..| +.|+||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus 24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~ev 98 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPYS-NYLFLGDYVDRGKHSVET 98 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCcc-cEEEeeeEecCCCCHHHH
Confidence 477889999999999999999999999866 999999999999999999999988754 599999999999999999
Q ss_pred HHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCC
Q 011465 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (485)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~ 349 (485)
+.+++++|+.+|.+|+++|||||.+.++..|||.+|+..+|+..+|..+.++|+.||+++++++++||||||| +|...+
T Consensus 99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~ 177 (294)
T PTZ00244 99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS 177 (294)
T ss_pred HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788889
Q ss_pred hhhhhhccCCCCCCCCCcccccccCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCe
Q 011465 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK 428 (485)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~ 428 (485)
+++|++++||.+.+++++++|+|||||... .+|.+++||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus 178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~ 257 (294)
T PTZ00244 178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ 257 (294)
T ss_pred HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence 999999999998888999999999999875 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011465 429 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 465 (485)
Q Consensus 429 ~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 465 (485)
|+|||||||||+..+|.||+|.| +++++++|++|.+
T Consensus 258 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~f~~~~~ 293 (294)
T PTZ00244 258 LVTVFSAPNYCGEFDNDAAVMNI-DDKLQCSFLIIPA 293 (294)
T ss_pred EEEEeCCccccCCCCceEEEEEE-CCCCcEeEEEeec
Confidence 99999999999999999999999 8899999998875
No 14
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=4e-71 Score=529.78 Aligned_cols=269 Identities=42% Similarity=0.829 Sum_probs=257.2
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011465 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (485)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~ 269 (485)
.++++++.++|+++.++++++|.++++..+ +.|+||+||++.+|.++|+..++++.+ .|||||||||||++|+||
T Consensus 22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~e~ 96 (293)
T cd07414 22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPES-NYLFLGDYVDRGKQSLET 96 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCcc-eEEEEeeEecCCCCcHHH
Confidence 577889999999999999999999998765 999999999999999999999987654 699999999999999999
Q ss_pred HHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCC
Q 011465 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (485)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~ 349 (485)
+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+..+|..+.++|++||++|++++++||||||+ +|...+
T Consensus 97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~ 175 (293)
T cd07414 97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS 175 (293)
T ss_pred HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hhhhhhccCCCCCCCCCcccccccCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCe
Q 011465 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGK 428 (485)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~ 428 (485)
+++|+.++||.++++.++++|+|||||... .+|.+|+||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus 176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~ 255 (293)
T cd07414 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQ 255 (293)
T ss_pred HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCc
Confidence 999999999998888999999999999865 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011465 429 LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 465 (485)
Q Consensus 429 ~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 465 (485)
|+|||||||||+..+|.||+|.| +++++++|.+|++
T Consensus 256 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~~ 291 (293)
T cd07414 256 LVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKP 291 (293)
T ss_pred EEEEecCCcccCCCCceEEEEEE-CCCCcEEEEEecC
Confidence 99999999999999999999999 8899999998864
No 15
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.6e-69 Score=515.51 Aligned_cols=267 Identities=49% Similarity=0.901 Sum_probs=254.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHH
Q 011465 192 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL 271 (485)
Q Consensus 192 ~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~ 271 (485)
+++++.++|+++.+++.++|++++++.+ ++|+||+||++.+|.++|+..+.++ .+.|+|||||||||++|+||+.
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~ 76 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL 76 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence 4577999999999999999999999754 9999999999999999999988765 4579999999999999999999
Q ss_pred HHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChh
Q 011465 272 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS 351 (485)
Q Consensus 272 ~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~ 351 (485)
+++++|+.+|.+|++||||||.+.++..|||.+|+..+|+..+|+.+.++|++||+++++++++||||||| +|...+++
T Consensus 77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~ 155 (271)
T smart00156 77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD 155 (271)
T ss_pred HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hhhhccCCCCCCCCCcccccccCCCC-CCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEE
Q 011465 352 DIKTIDRFCEPPEEGLMCELLWSDPQ-PLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLI 430 (485)
Q Consensus 352 ~i~~~~r~~~~~~~~~~~~llw~dp~-~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~ 430 (485)
+|++++||.+++.+++++|+|||||. ...+|.+|+||.|+.||++++++||++||+++||||||++++||++.++++|+
T Consensus 156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 235 (271)
T smart00156 156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV 235 (271)
T ss_pred HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence 99999999888889999999999996 45689999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011465 431 TVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 465 (485)
Q Consensus 431 tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 465 (485)
|||||||||+..+|.||++.| +++++++|.+|++
T Consensus 236 TvfSa~~y~~~~~n~~a~~~i-~~~~~~~~~~~~~ 269 (271)
T smart00156 236 TIFSAPNYCGRFGNKAAVLKV-DKDLKLSFEQFKP 269 (271)
T ss_pred EEECCcccccCCCceEEEEEE-CCCCcEEEEEecC
Confidence 999999999989999999999 8899999999864
No 16
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-70 Score=482.58 Aligned_cols=287 Identities=38% Similarity=0.690 Sum_probs=275.5
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEc
Q 011465 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (485)
Q Consensus 177 ~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vfl 256 (485)
.++..++.+...+.+++.++..+|..++++|.++.++..+..| ++++||+||||+||+++|+..|..++. +|+|+
T Consensus 19 ~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylfm 93 (319)
T KOG0371|consen 19 DVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLFM 93 (319)
T ss_pred ccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceeee
Confidence 4677888999999999999999999999999999999998876 999999999999999999888877765 59999
Q ss_pred ccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhc-HHHHHHHHHHhccccccceeCCcE
Q 011465 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 335 (485)
Q Consensus 257 GD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~-~~~~~~~~~~f~~lPl~~~i~~~~ 335 (485)
|||||||++|+|++.+|.++|++||++|.+||||||++.++..|||++||.+||| ..+|..|.+.|+.+|+.|.|+++|
T Consensus 94 GDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~i 173 (319)
T KOG0371|consen 94 GDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESKI 173 (319)
T ss_pred eeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccce
Confidence 9999999999999999999999999999999999999999999999999999995 589999999999999999999999
Q ss_pred EEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeecc
Q 011465 336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHE 415 (485)
Q Consensus 336 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~ 415 (485)
||+|||+ ||.+.+++.++.++|.++.+.++.+||||||||.+..||..++||+|+.||.+..++|-++||+++|-|+||
T Consensus 174 fc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRahq 252 (319)
T KOG0371|consen 174 FCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAHQ 252 (319)
T ss_pred eeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCC
Q 011465 416 VKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 470 (485)
Q Consensus 416 ~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
.+++||.|.+...|+|||||||||..++|.+|++.+ +++....|.||+++|++.
T Consensus 253 lvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~-d~~~~~~f~q~~psp~k~ 306 (319)
T KOG0371|consen 253 LVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMER-DDTKNYDFLQFDPSPRKV 306 (319)
T ss_pred HHhcccceeeecceeEEccCCchhhccccHHHHhhh-hhccCcceEEecCCcccc
Confidence 999999999999999999999999999999999999 899999999999988654
No 17
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.7e-66 Score=503.97 Aligned_cols=270 Identities=36% Similarity=0.643 Sum_probs=249.8
Q ss_pred cchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCC-------CCCeEEcccccCC
Q 011465 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR 262 (485)
Q Consensus 190 ~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~-------~~~~vflGD~vdr 262 (485)
.++++++..+|+++.++++++|.++++..+ +.|+||+||++.+|.++|+..++++. +..||||||||||
T Consensus 20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR 95 (311)
T cd07419 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR 95 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence 456788999999999999999999999765 99999999999999999999888754 2469999999999
Q ss_pred CCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH------HHHHHHHHHhccccccceeCCcEE
Q 011465 263 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF 336 (485)
Q Consensus 263 G~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~------~~~~~~~~~f~~lPl~~~i~~~~~ 336 (485)
|++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+++. .+|..+.++|++||++++++++++
T Consensus 96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l 175 (311)
T cd07419 96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL 175 (311)
T ss_pred CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence 99999999999999999999999999999999999999999999999865 699999999999999999999999
Q ss_pred EEeCccccCCCCChhhhhhccCCC-CCCCCCcccccccCCCCCC---CCCCcCC---CCCc--cccCHHHHHHHHHHCCC
Q 011465 337 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSFGADVTKRFLQDNSL 407 (485)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~llw~dp~~~---~~~~~~~---rg~~--~~fg~~~~~~fl~~~~~ 407 (485)
|||||| +|...++++|+.+.||. .++.+++++|+|||||... .++.+++ ||.| +.||++++++||++||+
T Consensus 176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l 254 (311)
T cd07419 176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL 254 (311)
T ss_pred EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence 999999 88999999999999996 5566789999999999875 3666666 9999 69999999999999999
Q ss_pred cEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011465 408 DLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 465 (485)
Q Consensus 408 ~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 465 (485)
++||||||++++||++.++++|+|||||||||+..+|.||+++| ++++++++.++++
T Consensus 255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i-~~~~~~~~~~~~~ 311 (311)
T cd07419 255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVL-GRDLTIIPKLIHP 311 (311)
T ss_pred eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999 8899998888753
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-67 Score=497.98 Aligned_cols=315 Identities=40% Similarity=0.742 Sum_probs=289.7
Q ss_pred cccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCH
Q 011465 155 QSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 234 (485)
Q Consensus 155 ~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~ 234 (485)
..+++...+.++.+... ++...++.+++.|+..+.++++++..++.++++.|+..|++.+++...+..+.|+||+||++
T Consensus 99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl 177 (631)
T KOG0377|consen 99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL 177 (631)
T ss_pred cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence 57778788898988886 88889999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhh---c
Q 011465 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S 311 (485)
Q Consensus 235 ~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~---~ 311 (485)
+||.-+|-++|+|+..++|||.||+||||.+|+|||.+|+++-+.||+.|+|.|||||...||..|||..|+..|| +
T Consensus 178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~ 257 (631)
T KOG0377|consen 178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG 257 (631)
T ss_pred cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCC-----CCC-----------------CCCccc
Q 011465 312 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPP-----------------EEGLMC 369 (485)
Q Consensus 312 ~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~-----------------~~~~~~ 369 (485)
..+.+.+.++|++||++.+|+++||+||||| | +..+++-+.+|+|.. .|| ++..+.
T Consensus 258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~ 335 (631)
T KOG0377|consen 258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF 335 (631)
T ss_pred cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence 7899999999999999999999999999999 5 567788888887751 121 234567
Q ss_pred ccccCCCCCCCCCCc-CCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEE
Q 011465 370 ELLWSDPQPLPGRGP-SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAF 448 (485)
Q Consensus 370 ~llw~dp~~~~~~~~-~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~ 448 (485)
|++||||....|..| .-||.|++||+|++.+||++.+++++||+|||.++||+++||+||+||||||||....+|+||+
T Consensus 336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAY 415 (631)
T KOG0377|consen 336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAY 415 (631)
T ss_pred HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceE
Confidence 999999999988655 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEeccCCCCCCC
Q 011465 449 IRFEAPTLKPNIVTFAAVPHPDVKP 473 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485)
+.+ .+.+.|.|+||.+.......+
T Consensus 416 ikl-~~~~~PhfvQY~a~k~t~~~t 439 (631)
T KOG0377|consen 416 IKL-GNQLTPHFVQYQAAKQTKRLT 439 (631)
T ss_pred EEe-CCCCCchHHHHHhhhhhhhhh
Confidence 999 999999999999865444333
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=1e-33 Score=266.05 Aligned_cols=213 Identities=49% Similarity=0.760 Sum_probs=175.4
Q ss_pred eEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchh
Q 011465 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304 (485)
Q Consensus 225 ~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~ 304 (485)
+++||+||++++|.++++..+.++ .+.+||+|||||||+.+.+|+.++..++.. |.+++++|||||.+.++...++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~-~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~ 78 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPP-NDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD 78 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCC-CCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence 489999999999999999988754 567999999999999999999999999887 999999999999999887776654
Q ss_pred HH---------HhhhcHHHHHHHHHHhccccccceeCC-cEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccC
Q 011465 305 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 374 (485)
Q Consensus 305 e~---------~~~~~~~~~~~~~~~f~~lPl~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~ 374 (485)
+. .......++..+.++|..||+++.++. +++|||||+ +|.....+.+. ..+.+....+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~ 151 (225)
T cd00144 79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS 151 (225)
T ss_pred hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence 42 223355788888999999999999987 999999999 55544333332 23344567899999
Q ss_pred CCCCCCC-CCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 011465 375 DPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 450 (485)
Q Consensus 375 dp~~~~~-~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~ 450 (485)
+|..... ...+.|+. |+++++.|++.++.+.|||||+++..|+....+++++||+|++.|++..+|..+++.
T Consensus 152 r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 152 DPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred CCCCCCCCCcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence 9986543 23344444 999999999999999999999999999877788999999999999877777777654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.92 E-value=9.2e-25 Score=200.99 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=130.0
Q ss_pred eEecccCCCHHHHHHHHHHcCC-------CCCCCCeEEcccccCCCCChHHHHHHHHhchhc---CCCcEEEeccCCCcc
Q 011465 225 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK 294 (485)
Q Consensus 225 ~v~GDihG~~~dl~~il~~~~~-------~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~---~p~~v~~lrGNHE~~ 294 (485)
+++|||||+++.|.++++..+. ....+.+||+||+||||+++.+|+.+|+.|+.. .|.+|++++||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4899999999999999998764 334668999999999999999999999999743 467899999999999
Q ss_pred ccccccCchh--HHHhhhc-----HHHH---HHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCC
Q 011465 295 SMNKIYGFEG--EVRSKLS-----ETFV---ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364 (485)
Q Consensus 295 ~~~~~~~f~~--e~~~~~~-----~~~~---~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 364 (485)
.++..+.+.. +...... ...+ ..+.+|++.+|+...++ ++++||||+ +|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~~------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-GP------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-HH-------------------
Confidence 9875543321 1111000 0111 23468999999999987 699999998 22
Q ss_pred CCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecC
Q 011465 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSA 435 (485)
Q Consensus 365 ~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa 435 (485)
+|++.-... .... .-+...+.++++.++.+.||+||+.++.|....++++|++|.+.
T Consensus 140 -------~w~r~y~~~---~~~~----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSKE---TSDK----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhhh---hhhc----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 232211000 0000 00225688999999999999999999888877899999999974
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.91 E-value=1.5e-23 Score=198.22 Aligned_cols=117 Identities=26% Similarity=0.509 Sum_probs=93.8
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCC--------CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~--------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++.|+|||||+++.|.+++++.++. +..+.+||+||||||||+|.|||.+++.+. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 4789999999999999999998764 345679999999999999999999998884 567899999999988
Q ss_pred ccccccC--------chhHHHhhh-------cHHHHHHHHHHhccccccceeC-CcEEEEeCcc
Q 011465 295 SMNKIYG--------FEGEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGL 342 (485)
Q Consensus 295 ~~~~~~~--------f~~e~~~~~-------~~~~~~~~~~~f~~lPl~~~i~-~~~~~vHgGi 342 (485)
.++...+ .. +....| ...+.+.+.++|+.||+...++ ++++|||||+
T Consensus 80 ~l~~~~~~~~~~~~gg~-~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~ 142 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLE-TTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI 142 (245)
T ss_pred HHHHHhCCCccccchhH-hHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC
Confidence 7764322 11 111112 1346788899999999998774 6899999999
No 22
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.88 E-value=6.4e-22 Score=184.17 Aligned_cols=115 Identities=24% Similarity=0.270 Sum_probs=90.0
Q ss_pred eEecccCCCHHHHHHHHHHcCCC-------CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccc
Q 011465 225 TVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297 (485)
Q Consensus 225 ~v~GDihG~~~dl~~il~~~~~~-------~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 297 (485)
+|||||||+++.|.+++++.++. +..+.+||+||||||||+|.|||.+|+.++. +.++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 68999999999999999998764 2345899999999999999999999999863 45899999999998775
Q ss_pred cccCc------------h-----hHHHhhh--cHHHHHHHHHHhccccccceeCCcEEEEeCcc
Q 011465 298 KIYGF------------E-----GEVRSKL--SETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342 (485)
Q Consensus 298 ~~~~f------------~-----~e~~~~~--~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi 342 (485)
...+- . .+..+.+ ..+..+...+||+.||+....+ +++|||||+
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~ 142 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACW 142 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCc
Confidence 32210 0 0111122 1244577889999999998875 799999998
No 23
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.87 E-value=1.1e-22 Score=191.46 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=99.4
Q ss_pred eeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCch
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~ 303 (485)
+++||||||+++.|.+++++.++.+..+.++|+||||||||+|+||+.+|..++ .++++++||||.+.++..+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 479999999999999999999887777889999999999999999999999986 5789999999999888766654
Q ss_pred hHHH-----hhhcHHHHHHHHHHhccccccceeCC-cEEEEeCccccCCCCChhhhh
Q 011465 304 GEVR-----SKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIK 354 (485)
Q Consensus 304 ~e~~-----~~~~~~~~~~~~~~f~~lPl~~~i~~-~~~~vHgGi~~~~~~~~~~i~ 354 (485)
..-. .-......+...+|++.+|+...+++ ++++||||| +|.. ++++..
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~w-~~~~~~ 131 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQW-SIEQAL 131 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCCC-CHHHHH
Confidence 2111 11111223567799999999998875 899999999 5654 444433
No 24
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.87 E-value=1.2e-21 Score=186.49 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=137.9
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
.+++||||||+++.|..++++.++.+..+.++|+||+|||||+|.||+.+|..+ +.++++++||||.+.+...+|+
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~ 77 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGI 77 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCC
Confidence 378999999999999999999887666678999999999999999999999887 4578999999999988777665
Q ss_pred hhH-----HHhhhcHHHHHHHHHHhcccccccee-CCcEEEEeCccccCCCCChhhhhhccC----C-CCCCCCCccccc
Q 011465 303 EGE-----VRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDR----F-CEPPEEGLMCEL 371 (485)
Q Consensus 303 ~~e-----~~~~~~~~~~~~~~~~f~~lPl~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r----~-~~~~~~~~~~~l 371 (485)
... +..-......+...+|++.+|+...+ ++++++||||+ +|.. ++++.....+ . ..+.....+..+
T Consensus 78 ~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~~-~~~~~~~~a~eve~~l~~~~~~~~~~~m 155 (275)
T PRK00166 78 KRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQW-DLATALALAREVEAVLRSDDYRDFLANM 155 (275)
T ss_pred ccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 421 11111122345567999999998886 56899999999 5554 3333222111 1 111112244555
Q ss_pred ccCCCC-CCCCCC-------------------------------c--CCCCCccccCHHHHHHHHHHCCCcEEEeecccc
Q 011465 372 LWSDPQ-PLPGRG-------------------------------P--SKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK 417 (485)
Q Consensus 372 lw~dp~-~~~~~~-------------------------------~--~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~ 417 (485)
.|+.|. +..... + .+.|.--+|-... -+ ..-..||=||.+.
T Consensus 156 y~~~p~~W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~---~~--~~~~~i~fGHwa~ 230 (275)
T PRK00166 156 YGNEPDRWSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPG---RK--TRDYTIVFGHWAA 230 (275)
T ss_pred cCCCcCccCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcC---cc--CCCCeEEEecCcc
Confidence 565563 111000 0 0111111221110 01 1234799999998
Q ss_pred ccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEE
Q 011465 418 DEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF 451 (485)
Q Consensus 418 ~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~ 451 (485)
..|... .+.++.|-|.--+ ++.=..+.+
T Consensus 231 l~G~~~--~~~~~~LDtGcvw----gg~Lta~~l 258 (275)
T PRK00166 231 LEGLTT--PPNIIALDTGCVW----GGKLTALRL 258 (275)
T ss_pred cCCccC--CCCeEEeeccccc----CCeEEEEEe
Confidence 778865 5668888877644 455556777
No 25
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.86 E-value=4.4e-21 Score=180.58 Aligned_cols=118 Identities=35% Similarity=0.523 Sum_probs=94.5
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCC---------CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSE---------ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~---------~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
++.|+|||||++..|..+|+..++.+. .+.+||+|||||||++|.|||.+|..++. +.+++++|||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence 489999999999999999999876532 46799999999999999999999998874 4578999999999
Q ss_pred cccccc--------cCchhHHHhhh---cHHHHHHHHHHhccccccceeC-CcEEEEeCccc
Q 011465 294 KSMNKI--------YGFEGEVRSKL---SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF 343 (485)
Q Consensus 294 ~~~~~~--------~~f~~e~~~~~---~~~~~~~~~~~f~~lPl~~~i~-~~~~~vHgGi~ 343 (485)
+.++.. .|+.. ....+ ...+.+.+.+||+.||+...++ ++++|||||+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~ 140 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEE-TVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK 140 (234)
T ss_pred HHHHHhcCCCccccCcccc-hHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence 876543 23322 12222 2456778889999999988775 57999999984
No 26
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.86 E-value=4.2e-21 Score=178.56 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=120.5
Q ss_pred eecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 215 ~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
.++.....+++|+|||||+++.|.++++.+++.+..+.++|+||+|||||+|.|||.+|... .++.++||||.+
T Consensus 10 ~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~ 83 (218)
T PRK11439 10 RIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQM 83 (218)
T ss_pred cccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHH
Confidence 34444445799999999999999999999887666678999999999999999999998652 467899999998
Q ss_pred ccccccCch--------hHHHhhhc---HHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCCC
Q 011465 295 SMNKIYGFE--------GEVRSKLS---ETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360 (485)
Q Consensus 295 ~~~~~~~f~--------~e~~~~~~---~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~ 360 (485)
.++...+-. .+...... .+.+..+.++++.||+...+ ++++++||||+|.+.. ....+.
T Consensus 84 ~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~-------~~~~~~ 156 (218)
T PRK11439 84 ALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVY-------EWQKDV 156 (218)
T ss_pred HHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCch-------hhhccC
Confidence 886432110 01111111 13445566899999999765 3579999999843210 111110
Q ss_pred CCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCC
Q 011465 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNY 438 (485)
Q Consensus 361 ~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y 438 (485)
...+++|+.+.....+. .+ ...+.+.||-||+++..-.. .+..+-|-+.+-|
T Consensus 157 ------~~~~~~w~r~~~~~~~~--~~---------------~~~~~~~vv~GHT~~~~~~~---~~~~i~IDtGav~ 208 (218)
T PRK11439 157 ------DLHQVLWSRSRLGERQK--GQ---------------GITGADHFWFGHTPLRHRVD---IGNLHYIDTGAVF 208 (218)
T ss_pred ------CccceEEcChhhhhccc--cc---------------cccCCCEEEECCccCCCccc---cCCEEEEECCCCC
Confidence 23467897543211100 00 11245679999999764332 2345666666544
No 27
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.85 E-value=1.5e-21 Score=183.50 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=98.4
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
.+++||||||+++.|.++|+++++.+..+.++|+||+|||||+|+|||.++.+++ .++++++||||.+.+...+|+
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 3799999999999999999999887777889999999999999999999998874 567889999999999887776
Q ss_pred h-----hHHHhhhcHHHHHHHHHHhccccccceeC-CcEEEEeCccccCCC
Q 011465 303 E-----GEVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDG 347 (485)
Q Consensus 303 ~-----~e~~~~~~~~~~~~~~~~f~~lPl~~~i~-~~~~~vHgGi~~~~~ 347 (485)
. +....-+.....+...+|++.+|+....+ .++++||||| +|..
T Consensus 78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~w 127 (279)
T TIGR00668 78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQW 127 (279)
T ss_pred CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCCC
Confidence 3 12222223344567789999999997654 4799999999 6654
No 28
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.85 E-value=1.1e-20 Score=174.76 Aligned_cols=168 Identities=24% Similarity=0.273 Sum_probs=117.3
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccC-
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG- 301 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~- 301 (485)
+++++||+||++..|.++++..++.+..+.++|+|||||||+++.|++.+|.. ..+++++||||.+.+....+
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCC
Confidence 58999999999999999999887765567899999999999999999998865 35788999999998876544
Q ss_pred -chhHHHhhh---------cHHHHHHHHHHhccccccceeC---CcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcc
Q 011465 302 -FEGEVRSKL---------SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368 (485)
Q Consensus 302 -f~~e~~~~~---------~~~~~~~~~~~f~~lPl~~~i~---~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~ 368 (485)
...+...+. ...+++...+||+.||+...++ .++++||||+|+.....+. . + ++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~--~---~--~~~~~~~~ 148 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV--G---A--VTLRPEDI 148 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh--h---c--cccCcccc
Confidence 222222222 1225666788999999998774 4799999998432211110 0 0 12233456
Q ss_pred cccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCc
Q 011465 369 CELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGY 421 (485)
Q Consensus 369 ~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~ 421 (485)
.+++|++|....... ...-+.+.||-||+..+.-+
T Consensus 149 ~~~~w~~~~~~~~~~------------------~~~~~~~~iV~GHTh~~~~~ 183 (207)
T cd07424 149 EELLWSRTRIQKAQT------------------QPIKGVDAVVHGHTPVKRPL 183 (207)
T ss_pred eeeeeccchhhhcCc------------------cccCCCCEEEECCCCCCcce
Confidence 789998765322110 01114578999999876543
No 29
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.84 E-value=3.6e-20 Score=173.88 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=63.8
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCC-----CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCC-cEEEeccCCCcccc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM 296 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~-----~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~-~v~~lrGNHE~~~~ 296 (485)
.++++|||||+++.|..+++..... ...+.+|||||||||||+|.+|+.+|..++..+|. .+++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 5899999999999999999865321 23446999999999999999999999999988876 68889999997765
Q ss_pred c
Q 011465 297 N 297 (485)
Q Consensus 297 ~ 297 (485)
.
T Consensus 83 ~ 83 (304)
T cd07421 83 A 83 (304)
T ss_pred h
Confidence 4
No 30
>PHA02239 putative protein phosphatase
Probab=99.82 E-value=4.9e-20 Score=172.02 Aligned_cols=172 Identities=22% Similarity=0.252 Sum_probs=116.5
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCC-CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccccccc-
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY- 300 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~- 300 (485)
+++++|||||++..|.++++...... ..+.+||+|||||||++|.+|+..++.+.. .+..++.++||||.+.+....
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~ 80 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMEN 80 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhC
Confidence 47899999999999999998864321 245799999999999999999999998753 456888899999998654221
Q ss_pred ----Cchh-HHH--------hhhc-------------------------------HHHHHHHHHHhccccccceeCCcEE
Q 011465 301 ----GFEG-EVR--------SKLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKVF 336 (485)
Q Consensus 301 ----~f~~-e~~--------~~~~-------------------------------~~~~~~~~~~f~~lPl~~~i~~~~~ 336 (485)
+... ++. ..|+ ...+..+.+|++.||+....+ +++
T Consensus 81 ~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~i 159 (235)
T PHA02239 81 VDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYI 159 (235)
T ss_pred chhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEE
Confidence 0110 121 1221 012344556899999998876 799
Q ss_pred EEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccc
Q 011465 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
|||||+ .|.. +.++....+++|.+. . ++ ...=+.||-||++
T Consensus 160 fVHAGi-~p~~--------------~~~~q~~~~llWiR~-f------~~-----------------~~~g~~vV~GHTp 200 (235)
T PHA02239 160 FSHSGG-VSWK--------------PVEEQTIDQLIWSRD-F------QP-----------------RKDGFTYVCGHTP 200 (235)
T ss_pred EEeCCC-CCCC--------------ChhhCCHhHeEEecc-c------CC-----------------CCCCcEEEECCCC
Confidence 999999 4431 112223578999874 1 11 1122479999999
Q ss_pred cccCcEEecCCeEEEEecCC
Q 011465 417 KDEGYEIEHDGKLITVFSAP 436 (485)
Q Consensus 417 ~~~G~~~~~~~~~~tvfsa~ 436 (485)
+.++..... ++.|.|-...
T Consensus 201 ~~~~~~~~~-~~~I~IDtGa 219 (235)
T PHA02239 201 TDSGEVEIN-GDMLMCDVGA 219 (235)
T ss_pred CCCCccccc-CCEEEeecCc
Confidence 876553332 3456666654
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.79 E-value=5e-19 Score=164.31 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=91.0
Q ss_pred eecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 215 ~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
.++....+++.++||+||+++.|..+++...+.+..+.++|+||||||||+|.||+.+|.. ..++.+|||||.+
T Consensus 8 ~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~ 81 (218)
T PRK09968 8 KINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAM 81 (218)
T ss_pred eccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHH
Confidence 4444445689999999999999999999887666677899999999999999999998853 3577899999998
Q ss_pred ccccccC--ch------hHHHhhhcH---HHHHHHHHHhccccccceeC---CcEEEEeCcccc
Q 011465 295 SMNKIYG--FE------GEVRSKLSE---TFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFS 344 (485)
Q Consensus 295 ~~~~~~~--f~------~e~~~~~~~---~~~~~~~~~f~~lPl~~~i~---~~~~~vHgGi~~ 344 (485)
.+....+ .. .++...... .....+..+++.||+...+. .++++||||+|.
T Consensus 82 ~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~ 145 (218)
T PRK09968 82 ALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPG 145 (218)
T ss_pred HHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCC
Confidence 8753311 00 011111111 23334456899999998763 479999999843
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=3.3e-18 Score=170.36 Aligned_cols=171 Identities=22% Similarity=0.286 Sum_probs=130.3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.-+|.-+++|+++|++|-..+.+++|+..|.+|+.+.|+++.++-++|.+|+.+|..+-|+.+|++|++++|..+.+|.+
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~N 325 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNN 325 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhH
Confidence 34577778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+|.++...|+..+|..+|++|+.+.|+.+++..+++.++...+. +++|..+|+ +++++.|.+..+.
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~ly~------------~al~v~p~~aaa~ 391 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRLYL------------KALEVFPEFAAAH 391 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHHHH------------HHHhhChhhhhhh
Confidence 88888888888888888888888888888888888888866555 677777777 8888888888875
Q ss_pred ccCCcc--cHHHHHHHHHhhhhcccch
Q 011465 168 IEGDVI--TLDFVKKMMDDFKNQKCLH 192 (485)
Q Consensus 168 l~~~~l--~~~~l~~lie~l~~~~~l~ 192 (485)
-+...+ .+..+++++..++...++.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 554422 2233555555554444433
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=8.1e-17 Score=149.34 Aligned_cols=123 Identities=41% Similarity=0.694 Sum_probs=117.6
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.....++.+...|+-+++.++|++|+..|.+||+++|.++.+|.++|.+|.++|+++.|++.++.|+.+||.+.++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
|.+|+.+|++++|++.|++||+++|++...+..|..+...++.
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888766665
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=2e-16 Score=157.90 Aligned_cols=122 Identities=22% Similarity=0.211 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+.++-++|.+|+.+|+.+.|+..|++||++.|+.+.+|.++|.++...|+..||+++|.+|+.+.|..+.+.++||
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.+|.++|..++|...|+++++..|+...++.+++.+++..++
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 555555555555555555555555555555555555544333
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=6.5e-15 Score=127.87 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
..++.+|..+...|++++|++.|++++..+|.+..++.++|.++...|++++|+..|++++.++|+++.+++++|.++..
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+|++++|+..|++++++.|+++..+..++.+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988875544
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.1e-15 Score=152.61 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=140.0
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
....|..++.|+.+|++|..+++++.|++.+++|++++|.++.+|..+|.-+....+++.|..+|+.|+..+|++-.||+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 35567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
-+|.+|.++++++.|.-.|++|++++|.+......++.++..+++ .++|+.+++ +|+.++|.....
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~------------~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE------------KAIHLDPKNPLC 559 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH------------HHHhcCCCCchh
Confidence 999999999999999999999999999999999999999988887 599999999 888888877665
Q ss_pred cccC
Q 011465 167 RIEG 170 (485)
Q Consensus 167 ~l~~ 170 (485)
....
T Consensus 560 ~~~~ 563 (638)
T KOG1126|consen 560 KYHR 563 (638)
T ss_pred HHHH
Confidence 4443
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=4.8e-13 Score=114.60 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
++..+.+|.+|..++..|++++|...|+-+..++|.++..|++||.|+..+|++++|+.+|.+|+.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
|+..+|+.+.|.+.|+.++....+.+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999999855544
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=2.4e-13 Score=146.54 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=118.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+.++..+|.++..+|++++|+..|+++++++|.+..+|..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc----------------------ccccc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE----------------------SERHS 147 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~----------------------~~~~~ 147 (485)
.++..+|++++|+.+|+++++++|++..++..++.++...++ +++|+..++ .+.+.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 888888888888888888888888888888888887765554 444444333 23445
Q ss_pred ccccccccccccCCCCCC
Q 011465 148 VADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 148 ~a~~~~~~~l~~~~~~~~ 165 (485)
.|...+.++++++|....
T Consensus 485 ~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHHHHHHhcCCcccc
Confidence 555555577777665433
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.52 E-value=1.1e-13 Score=149.08 Aligned_cols=144 Identities=23% Similarity=0.325 Sum_probs=114.0
Q ss_pred chhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 011465 10 SVSRAEELKALANEAF---RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~---~~g~~~~A~~~y~~al~~---~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~ 83 (485)
.++....+..++..+. ..++|++|++.|+++++. .|..+.++..+|.++..+|++++|+..++++++++|++..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4444555566665543 357888899999988876 4777888888898888889999999999999988888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+|..+|.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++++|..
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------kal~l~P~~ 432 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQ------------KSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHcCccC
Confidence 888889988889999999999999998888888888888888866655 678887777 666666665
Q ss_pred CCcc
Q 011465 164 SGAR 167 (485)
Q Consensus 164 ~~~~ 167 (485)
....
T Consensus 433 ~~~~ 436 (615)
T TIGR00990 433 IFSH 436 (615)
T ss_pred HHHH
Confidence 4443
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=6.6e-13 Score=118.89 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=131.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
..+.+.+..++|.-|+.+|++..|.+.+++||+.+|++..+|..+|..|.+.|+.+.|-+.|++|+.++|++..++.+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKL--SPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
..+..+|++++|...|++|+.. -|.-+..+.+++.|-...|+ ++.|..+++ ++++.+|.+..+.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~------------raL~~dp~~~~~~ 176 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK------------RALELDPQFPPAL 176 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH------------HHHHhCcCCChHH
Confidence 9999999999999999999973 23456788999999855554 778888877 8999999988876
Q ss_pred ccC
Q 011465 168 IEG 170 (485)
Q Consensus 168 l~~ 170 (485)
+..
T Consensus 177 l~~ 179 (250)
T COG3063 177 LEL 179 (250)
T ss_pred HHH
Confidence 654
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=7.3e-13 Score=132.41 Aligned_cols=116 Identities=37% Similarity=0.663 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (485)
.+...|+.++..|+|++|++.|++|++++|+++.++.++|.++..+|++++|+.++++|+.++|+++.+|+++|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
|++++|+..|+++++++|+++.+...++.|...+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998766643
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=1.4e-12 Score=111.88 Aligned_cols=118 Identities=23% Similarity=0.412 Sum_probs=110.3
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+|+++...+.+|..++..|++++|++.+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
+|.++...|++++|+..|+++++.+|++.........+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999998865544443
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1.3e-12 Score=127.68 Aligned_cols=132 Identities=23% Similarity=0.200 Sum_probs=114.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...+..+..++.+|..+...|++++|+..|+++++++|+++.+|.++|.++...|++++|++.|+++++++|++..++.+
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 137 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN 137 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++...|++++|++.|+++++.+|+++........ . ....++++|+..+.
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l-~--~~~~~~~~A~~~l~ 189 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYL-A--ESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-H--HccCCHHHHHHHHH
Confidence 9999999999999999999999999999843222211 1 12234677777664
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.3e-12 Score=127.85 Aligned_cols=141 Identities=24% Similarity=0.308 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|.....|..+|..|....+.++-...|.+|..++|.+++.|+.+|++++-++++++|++.|++++.++|++..++..++.
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 33444588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
+.++++++++++..|+.+.+..|+.++.+...+.++ ..+.+|++|+..|. .+++++|.-..
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL--tDqqqFd~A~k~YD------------~ai~LE~~~~~ 497 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL--TDQQQFDKAVKQYD------------KAIELEPREHL 497 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH--hhHHhHHHHHHHHH------------HHHhhcccccc
Confidence 999999999999999999999999999999999998 55556899998888 77777777333
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=3.3e-13 Score=117.18 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=107.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 34 ~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
...++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..+|..+|.++..+|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56799999999985 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011465 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+++.++..++.++...|+ +++|+..+. +++.+.|......
T Consensus 90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~------------~Al~~~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ------------TAIKMSYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHHH
Confidence 999999999999977776 788888888 8888888776554
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=2.6e-12 Score=117.53 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=86.9
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCChHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~-~~~g~--~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.+|++++.|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 35677778888888888888888888888888888888888888888764 56666 4788888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
+.+|.++...|++++|+.+++++++..|.+.+-.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888888888888888888888877655433
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.6e-13 Score=131.03 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=153.0
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
..-+|++++.|+..|..++-.+++++|++-|++++.++|.+..++..++.+.+++++++++...|+.+.+..|+-++++.
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccC
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (485)
..|.++..++++++|.+.|.+|+++.|. ++..+...+.+..... .++..|+.+.. ++++++
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~------------KA~e~D 533 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLR------------KAIELD 533 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHH------------HHHccC
Confidence 9999999999999999999999999999 7776766666665544 56788888888 999999
Q ss_pred CCCCCccccCCc--ccHHHHHHHHHhhhhcccchH
Q 011465 161 PQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHK 193 (485)
Q Consensus 161 ~~~~~~~l~~~~--l~~~~l~~lie~l~~~~~l~~ 193 (485)
|....+....+. +....++++++.|.+...+..
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 998888555443 455678899998887665543
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.3e-12 Score=127.87 Aligned_cols=121 Identities=37% Similarity=0.631 Sum_probs=115.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
-.|+.+......|+.+++.|+|..|+..|++||+.+|+++.+|.|+|.||.+++++..|+.+++.+++++|++..+|.+.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 35666888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
|.++..+.+|++|++.|+++++.+|++.++...+..|....
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988664
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.3e-13 Score=128.94 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
+...-.|+.|...++.++|+.+|++|++++|....+|..+|.-|..+++...|++.|++|++++|.+-.+|+.+|++|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 44566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.+.=|+-+|++|++..|.|+..|..+|.||.++++ .++|+..+.
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk 456 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK 456 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999999999999999999999999999988777 588888877
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=3.9e-12 Score=116.41 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=111.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHcCC--HHHHHH
Q 011465 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK 103 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~eA~~ 103 (485)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|++|++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67788 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCC
Q 011465 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (485)
.++++++.+|+++.++..++..+...++ +++|+..++ +++++.|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~------------~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ------------KVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhhCCC
Confidence 9999999999999999999999966555 789988888 77776654
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.6e-12 Score=123.42 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=126.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
-+|.-..+|...|..|...++...|++.|++|++++|.+..+|+.+|++|.-++-+.=|+-+|++|+...|.++..|..|
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.||.++++.++|+++|.+|+.....+..++..+|.++..+++ .++|..+++
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye 490 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE 490 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 9999999999999999999999998889999999999988887 688888887
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=5.3e-12 Score=140.09 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
...+..++......|++++|+..|+++++.+|+ +.++.++|.++.++|++++|+..+++++.++|+++.++.++|.++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444555555669999999999999999996 8999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCcc
Q 011465 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVI 173 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l 173 (485)
..|++++|+..|++++++.|+++.++..++.++...++ +++|+..++ ++++++|+........+.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~------------~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR------------LVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCCchhhhhhhHH
Confidence 99999999999999999999999999999999977666 788888888 8888888776655443322
Q ss_pred --cHHHHHHHHHhhhhcccchH
Q 011465 174 --TLDFVKKMMDDFKNQKCLHK 193 (485)
Q Consensus 174 --~~~~l~~lie~l~~~~~l~~ 193 (485)
......++.+.+.....+..
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc
Confidence 22235555555555554444
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=4.3e-12 Score=134.76 Aligned_cols=132 Identities=20% Similarity=0.133 Sum_probs=116.1
Q ss_pred CchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011465 9 SSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p 79 (485)
.+|+.+.++..+|.++... +++++|++.+++|++++|+++.++..+|.++...|++++|+..+++|++++|
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P 369 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP 369 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4577788888888877643 4489999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+++.+++.+|.++..+|++++|+..++++++++|.++.+...++.++...++ +++|+..++
T Consensus 370 ~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~ 430 (553)
T PRK12370 370 ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD 430 (553)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence 9999999999999999999999999999999999998876666655544443 678877766
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.7e-12 Score=133.27 Aligned_cols=132 Identities=13% Similarity=0.032 Sum_probs=121.6
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+|+++.++..+|.++...|++++|++.|++|++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.+++..|++++|+..+++++... |+++.++..++.++...|+ +++|...+.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~~ 465 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLTK 465 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 888888999999999999999875 7889999999999977666 688888776
No 55
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=124.19 Aligned_cols=165 Identities=20% Similarity=0.215 Sum_probs=141.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------- 77 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~---------- 77 (485)
.++|+++++|..+|.+....++-..|+..++++++++|++..++..||.+|...|.-.+|+.++.+-+..
T Consensus 313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 5689999999999999999999999999999999999999999999999999888888887777766533
Q ss_pred -------------------------------CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011465 78 -------------------------------DP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (485)
Q Consensus 78 -------------------------------~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (485)
+| .+++++..||.+|.-.|+|+.|+.+|+.||+..|+|...|..||.
T Consensus 393 ~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 393 GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 34 466788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCc--ccHHHHHHHHHhhh
Q 011465 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFK 186 (485)
Q Consensus 125 ~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~--l~~~~l~~lie~l~ 186 (485)
++.--.+ .++|+..|. +++++.|.|..++.+.+. +.+...+++++++-
T Consensus 473 tLAN~~~--s~EAIsAY~------------rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 473 TLANGNR--SEEAISAYN------------RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HhcCCcc--cHHHHHHHH------------HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 8844443 577777777 999999999999888764 45555666666554
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.2e-11 Score=113.29 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=120.3
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
.......+..+..+|..+...|++++|++.++++++.+|++..++..+|.++...|++++|++.++++++.+|.+..++.
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34455668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|.++...|++++|+..|+++++.. +.....+..++.++...++ +++|...+.
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 159 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT 159 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999854 4556778888888855555 688888777
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=1.1e-11 Score=132.56 Aligned_cols=132 Identities=6% Similarity=-0.024 Sum_probs=124.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..++.+++++.+|.+....|.+++|...++.++++.|++..++.++|.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++.++|++++|...|+++++..|+++.++..++.+++..|+ .++|...++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~ 212 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ 212 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999988777 466666555
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=9.4e-12 Score=126.47 Aligned_cols=122 Identities=22% Similarity=0.355 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
+|.+-.+||.+|.+|+++++++.|.-.|++|++++|.+......+|..+.++|+.++|+..+++|+.++|.++...+..|
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.++..++++++|+..+++.-++.|++..++..++.++..+++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 555555555555555555555555555555555555555444
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.32 E-value=1.7e-11 Score=132.45 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=119.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~e----Al~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
...++..+...|++++|++.|+++++.+|+++.++..+|.++...|++++ |+..++++++++|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
..+|++++|+..++++++++|+++.++..++.++...++ +++|+..++ +++...|..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~------------~al~~~P~~ 351 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV------------QLAREKGVT 351 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCccc
Confidence 999999999999999999999999999999999876665 788888877 666666653
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.32 E-value=3e-11 Score=130.55 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=128.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQ----AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~----A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.|+.+..+..+|..+...|++++ |+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46678899999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
..+|.++..+|++++|+..|+++++..|+++.....++.++...++ +++|+..++ ++++..|....
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~--~deA~~~l~------------~al~~~P~~~~ 387 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK--TSEAESVFE------------HYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhChhhch
Confidence 9999999999999999999999999999998877777888766555 788888877 66666666543
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=2.1e-11 Score=109.35 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=119.9
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKG 84 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~---~~~~ 84 (485)
..+|+...+|..+|..|.+.|+.+.|-+.|++|+.++|++.++++|.|.-++.+|++++|...|++|+.. |. -+..
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t 141 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDT 141 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchh
Confidence 3468888999999999999999999999999999999999999999999999999999999999999974 54 5678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|-++|.|..+.|+.+.|.++|+++++++|+++.....++..+.. .+++..|..+++
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~--~~~y~~Ar~~~~ 197 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK--AGDYAPARLYLE 197 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh--cccchHHHHHHH
Confidence 99999999999999999999999999999999999888888744 444777777766
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.31 E-value=6.4e-11 Score=111.50 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=108.4
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+|.+++.++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKEC 125 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~ 125 (485)
.|.++..+|++++|...|++.+..+|++ .++...++.+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 9999999999999999999999999955 3444444433
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=6.2e-11 Score=110.26 Aligned_cols=131 Identities=22% Similarity=0.235 Sum_probs=120.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYYR 87 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~--p~~~~~~~~ 87 (485)
.|+.+..+..+|..+...|++++|++.|+++++..|.+..++.++|.++...|++++|+..+++++... +.....+..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999999854 456778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++...|++++|...++++++..|+++.++..++.++...++ +++|...++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 193 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE 193 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999866555 788888777
No 64
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.3e-11 Score=114.42 Aligned_cols=123 Identities=30% Similarity=0.465 Sum_probs=111.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
..+.+......|+.+++.|+|..|+..|++|+..-... ..++.|+|.|+.++++|.+|+..+.++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 34567778899999999999999999999999863311 356899999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
|+++|+|..++|+.|.++..+|+++.|+..|+++++++|+|..+...+..+.......
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888776664
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.7e-11 Score=119.03 Aligned_cols=131 Identities=22% Similarity=0.302 Sum_probs=106.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.+.++..|...|.++.+.|+.++|++.|+++++.+|+++.+...++.++...|+++++.+.++......|+++..|..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++..+|++++|+..|+++++..|+|+.....++.++...|+ .++|+.++.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHhccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999999999999999999977777 688888776
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=5.7e-11 Score=112.17 Aligned_cols=154 Identities=23% Similarity=0.224 Sum_probs=124.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH--
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-- 83 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~-- 83 (485)
..+..++.++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4567788999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHhhhhHHHhhcCCcccccccccc
Q 011465 84 -GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKLKFEEAIAVPESERHSVADS 151 (485)
Q Consensus 84 -~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~~~l---~~~~~~~~~~~~~~A~~~~~~~~~~~a~~ 151 (485)
+++.+|.++... |++++|++.|++++...|++..++..+ ...........+..|..++..+.+..+..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 799999999987 899999999999999999997665333 22222222222344555555666666666
Q ss_pred ccccccccCCC
Q 011465 152 IDYQSIEVEPQ 162 (485)
Q Consensus 152 ~~~~~l~~~~~ 162 (485)
.+.+++...|+
T Consensus 188 ~~~~al~~~p~ 198 (235)
T TIGR03302 188 RFETVVENYPD 198 (235)
T ss_pred HHHHHHHHCCC
Confidence 66677766554
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=2.7e-11 Score=103.90 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=106.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 35 ~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
+.|+++++.+|++..+...+|.++...|++++|+..+++++..+|.++.++..+|.++..+|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011465 115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 115 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
++..+..++.++...++ +++|+..++ +++++.|+.
T Consensus 84 ~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--PESALKALD------------LAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhcccc
Confidence 99999999999977665 788888877 677666643
No 68
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.27 E-value=1.4e-10 Score=96.78 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR 87 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~ 87 (485)
++.++.+|..+..+|++++|++.|.++++.+|++ +.+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4688999999999999999999999999999876 6789999999999999999999999999999885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
+|.++..+|++++|+..++++++..|+++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999987654
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=7.7e-11 Score=130.95 Aligned_cols=130 Identities=15% Similarity=0.027 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|+ +..+..+|.++.+.|++++|++.|+++++++|+++.++.++|.++...|++++|++.+++|++++|+++.+++++|
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344 7789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++..+|++++|+..|+++++++|++.......+.+..... ++..+...+.
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~--~~~~a~~~~~ 735 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF--NFRRLHEEVG 735 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH--HHHHHHHHHH
Confidence 99999999999999999999999999999998888874443 4777777666
No 70
>PLN02789 farnesyltranstransferase
Probab=99.25 E-value=1.3e-10 Score=113.88 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=116.6
Q ss_pred CchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCChHHH
Q 011465 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~--~eAl~~~~~al~~~p~~~~~~ 85 (485)
.+|+...+|..++.++...+ ++++|++.++++++.+|++..+|..++.++..+++. ++++.+++++++.+|.+..+|
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 35777888888888888887 578899999999999999988999888888888763 678888889999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh-h----HHHhhcCCccccccccccccccccccC
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-K----FEEAIAVPESERHSVADSIDYQSIEVE 160 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~----~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (485)
..++.++..+|++++|++++.++++.+|.+..+|...+.+...++.. . .++++.+. .+++..+
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~------------~~aI~~~ 213 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT------------IDAILAN 213 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH------------HHHHHhC
Confidence 99999999999999999999999999999988888888776544210 0 12233333 3778888
Q ss_pred CCCCCccc
Q 011465 161 PQYSGARI 168 (485)
Q Consensus 161 ~~~~~~~l 168 (485)
|.+..++.
T Consensus 214 P~N~SaW~ 221 (320)
T PLN02789 214 PRNESPWR 221 (320)
T ss_pred CCCcCHHH
Confidence 88777653
No 71
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=101.51 Aligned_cols=120 Identities=35% Similarity=0.587 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
...++.+...|+.++..|+|++|...|..||+..|.. +.+|.++|.++++++.++.|+..+.+|++++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 5677889999999999999999999999999999975 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
.+.|.+|.++..+++|++.|++.++.+|....+...++++-..+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999998887776666544333
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=4.1e-10 Score=100.95 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=100.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
......+..+..++.+|..+...|++++|+.+|+++++..|+. +.++.++|.++...|++++|+..+++++..+|++
T Consensus 26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3456678889999999999999999999999999999987753 5789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 011465 82 PKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND 115 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~--------------~~eA~~~~~~al~~~p~~ 115 (485)
..++..+|.++..+|+ +++|++.++++++.+|++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999888 577888888888888876
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=6.3e-11 Score=118.78 Aligned_cols=121 Identities=15% Similarity=0.276 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
.+++....+|..|+..|+|++|+.+|+.||..+|++...|..||.++....+.++|+..|.+|+++.|.+..+++++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhhh
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKKL 132 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~ 132 (485)
+..+|.|++|.++|-.||.+.+.+ ..+|..|..++..+++.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 999999999999999999986541 24677777666556553
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=7.3e-11 Score=135.82 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV--------------YYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
.|+.++++..+|.++..+|++++|++.|+++++.+|++.. ....+|.++...|++++|+..|++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667888899999999999999999999999998887642 12345778888899999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhc----------------
Q 011465 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA---------------- 139 (485)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~---------------- 139 (485)
+++|++..++..+|.++..+|++++|++.|+++++++|++..++..++.++... +.++|+.
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~---~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ---SPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888776421 1233322
Q ss_pred ---------------CCccccccccccccccccccCCCCCCc
Q 011465 140 ---------------VPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 140 ---------------~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
+...+.+..|...+.++++++|+....
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 234466777788888888888886554
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.8e-10 Score=112.53 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=110.6
Q ss_pred ccCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 011465 27 AKKYSQAIDLYSQAIELNS---Q-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p---~-~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 102 (485)
.++.+.++..+.++|...| . .+.+|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567889999999997443 3 37889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011465 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
..|+++++++|++..++..++.++...++ +++|+..++ ++++.+|...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~------------~al~~~P~~~ 166 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL------------AFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCCCCH
Confidence 99999999999999999999999976665 788888888 6777777653
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-10 Score=115.80 Aligned_cols=112 Identities=32% Similarity=0.572 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
..+...|+..+..|+|+.|+.+|..||.++|.+...|.++..+|..+|+|++|+....+.++++|+.+.+|.++|.++..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
+|+|++|+..|.+.|+.+|++......++.++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999888887
No 77
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=2.8e-10 Score=89.31 Aligned_cols=99 Identities=39% Similarity=0.664 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (485)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 011465 96 GKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 96 g~~~eA~~~~~~al~~~p~ 114 (485)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 78
>PRK15331 chaperone protein SicA; Provisional
Probab=99.19 E-value=7e-10 Score=95.61 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=103.3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
-.++..+..+..|..++.+|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..|..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
|.||..+|+.++|..+|+.++. .|++.....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999999998 566655443
No 79
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.19 E-value=1.1e-10 Score=103.78 Aligned_cols=159 Identities=22% Similarity=0.221 Sum_probs=104.4
Q ss_pred ceeEecccCCCHHHH---HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHH--HhchhcCCCcEEEeccCCCccccc
Q 011465 223 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN 297 (485)
Q Consensus 223 ~~~v~GDihG~~~dl---~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l--~~lk~~~p~~v~~lrGNHE~~~~~ 297 (485)
+++++||+|+..... ...+.........+.+|++||++|+|..+.+..... ...+...+..+++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 488999999999987 343333333344567999999999999988888775 666677789999999999998765
Q ss_pred cccCchhHHHh----------------------------------hhcHHHHHHHHHHhccccccceeCCcEEEEeCccc
Q 011465 298 KIYGFEGEVRS----------------------------------KLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF 343 (485)
Q Consensus 298 ~~~~f~~e~~~----------------------------------~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~ 343 (485)
..+........ ............+.............|+++|.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~ 161 (200)
T PF00149_consen 82 SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPY 161 (200)
T ss_dssp HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSS
T ss_pred cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCCC
Confidence 44322221110 01112223333334444444555678999999883
Q ss_pred cCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeecccc
Q 011465 344 SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVK 417 (485)
Q Consensus 344 ~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~ 417 (485)
+........ .....+.+.+..+++..++++++-||+-.
T Consensus 162 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~ 199 (200)
T PF00149_consen 162 SSSSDSSSY------------------------------------GNESKGREALEELLKKYNVDLVLSGHTHR 199 (200)
T ss_dssp TTSSSTHHH------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred Ccccccccc------------------------------------chhhccHHHHHHHHhhCCCCEEEeCceec
Confidence 221111111 12356778999999999999999999853
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=8e-11 Score=88.38 Aligned_cols=67 Identities=39% Similarity=0.584 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP 79 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~~p 79 (485)
++..|..+|..++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666666666666666666666666666655 45566666666655555
No 81
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=5.5e-10 Score=109.43 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
++-.+++-.+-.++...+++++|+..+.++|+++|.+..+|..++.++..++ ++++|+..++++++.+|++..+|..++
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 4555566555566778889999999999999999999999999999999998 689999999999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011465 90 AAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 90 ~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
.++..+|+. ++++..++++++.+|++..+|...+.++..++. ++++++.+. ++++.+|....++
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~------------~~I~~d~~N~sAW 179 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH------------QLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH------------HHHHHCCCchhHH
Confidence 999999974 788999999999999999999999999988876 688888888 8888888887775
Q ss_pred ccC
Q 011465 168 IEG 170 (485)
Q Consensus 168 l~~ 170 (485)
...
T Consensus 180 ~~R 182 (320)
T PLN02789 180 NQR 182 (320)
T ss_pred HHH
Confidence 544
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.16 E-value=5.5e-10 Score=105.41 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhC
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEID 78 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~eAl~~~~~al~~~ 78 (485)
++....+++.+|..++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|++.+++++..+
T Consensus 66 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 66 SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 3445578999999999999999999999999999998776 799999999886 88999999999999999
Q ss_pred CCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhhhHHHhh
Q 011465 79 PRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAI 138 (485)
Q Consensus 79 p~~~~~~-----------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~ 138 (485)
|++..++ ..+|.+|...|++++|+..|++++...|++ +.++..++.++..+++ +++|.
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~ 223 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQ 223 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHH
Confidence 9986542 467889999999999999999999998765 5789999999977777 68887
Q ss_pred cCCc
Q 011465 139 AVPE 142 (485)
Q Consensus 139 ~~~~ 142 (485)
.+++
T Consensus 224 ~~~~ 227 (235)
T TIGR03302 224 DAAA 227 (235)
T ss_pred HHHH
Confidence 7655
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.7e-10 Score=86.63 Aligned_cols=68 Identities=37% Similarity=0.625 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 011465 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP 113 (485)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 113 (485)
+++..|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999988
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=2.9e-09 Score=111.75 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
+...+.+...|+.++..|++++|.+.+.++|+.+|.++.+|..||.+|.++|+.++|+..+-.|-.++|.+...|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...++|.+++|.-+|.+|++.+|.+.......+.+++.+|. ..+|...+.
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~ 265 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFL 265 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 99999999999999999999999999999999999988777 466666665
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=1.6e-09 Score=99.38 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
++.+...+..+|...+..|++.+|+..+.++..++|++..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 45555566668888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..|.-.|+++.|...+..+...-+.+..+..+++.+.-..++ +.+|..+..
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--~~~A~~i~~ 226 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD--FREAEDIAV 226 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--hHHHHhhcc
Confidence 888888888888888888888777788888888887766665 444444433
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.14 E-value=3.2e-10 Score=130.59 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH----
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA---- 91 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~---- 91 (485)
....+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3445677788888888888888888888888888888888888888888888888888888888777665544433
Q ss_pred --------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 011465 92 --------------------------------------YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (485)
Q Consensus 92 --------------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (485)
+...|++++|++.|+++++++|+++.++..++.++...++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-- 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-- 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 3456788888888888888888888888888887755555
Q ss_pred HHHhhcCCc
Q 011465 134 FEEAIAVPE 142 (485)
Q Consensus 134 ~~~A~~~~~ 142 (485)
+++|+..++
T Consensus 511 ~~~A~~~l~ 519 (1157)
T PRK11447 511 RSQADALMR 519 (1157)
T ss_pred HHHHHHHHH
Confidence 677777666
No 87
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=9.7e-10 Score=122.98 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=122.3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+..+..+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++...|++++|...|++++..+|+++.++..++.++...++ +++|...++
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 251 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHAD 251 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999988866554 677766655
No 88
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.12 E-value=3.1e-10 Score=106.90 Aligned_cols=113 Identities=36% Similarity=0.501 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
.+..+...|+.|+++|.|++|+.+|.+++..+|.++..+.++|.+|+++..|..|...+..|+.++.....+|.+.|.+-
T Consensus 96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
..+|...+|.+.++.+|++.|++.+....++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999987765555443
No 89
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=106.31 Aligned_cols=100 Identities=28% Similarity=0.462 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+-.-|.-+.+.++|++|+..|.+||+++|.++-.|.++|.+|.++|.++.|++.+++|+.++|....+|..++.++..++
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44567778889999999999999999999999999999999999999999999999999999999999999999995555
Q ss_pred hhhHHHhhcCCccccccccccccccccccCCCCC
Q 011465 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
+ +++|+..|+ ++++++|++.
T Consensus 164 k--~~~A~~ayk------------KaLeldP~Ne 183 (304)
T KOG0553|consen 164 K--YEEAIEAYK------------KALELDPDNE 183 (304)
T ss_pred c--HHHHHHHHH------------hhhccCCCcH
Confidence 5 899998888 9999999886
No 90
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=2e-09 Score=96.16 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~ 84 (485)
......+..++.+|..+...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|.....
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 445667889999999999999999999999999998776 34689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 011465 85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP 116 (485)
Q Consensus 85 ~~~lg~~~~-------~~g~~~-------eA~~~~~~al~~~p~~~ 116 (485)
+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999 777776 56666667777777654
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.6e-10 Score=110.04 Aligned_cols=132 Identities=24% Similarity=0.328 Sum_probs=117.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~------------~~~~~lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
.++.++++++..|.+++...+.+.|+..|+++|+++|+.. ..+-..|.-.++.|.+.+|.++|..||.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3567788999999999999999999999999999999864 4467788999999999999999999999
Q ss_pred hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 77 IDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 77 ~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++|++ +..|.++|.+..++|+..+|+..++.|+.++|....++...+.|+..+++ +++|++.++
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~ 345 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYE 345 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99985 56788999999999999999999999999999999999999999977777 688888877
No 92
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.09 E-value=1.2e-09 Score=122.16 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|++...+..+|..+...|++++|++.|+++++.+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 44556666666666667777777777777776667666666677777666666 66777777777776766666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++...|++++|++.|+++++.+|.++.++..++.++...|+ +++|...++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 895 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR--KAEARKELD 895 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777777777777777777777777777677666655444 566655544
No 93
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=1.7e-09 Score=119.25 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.+..+.++..+|..+...|++++|++.|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...|++++|+..++++++..|+++.++..++.++...+. .++|+..++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~ 174 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID 174 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence 999999999999999999999999999999999888765444 455555444
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=1.6e-09 Score=110.14 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYR 87 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~-----~~~~~ 87 (485)
....+..+|..+...|++++|++.|+++++.+|.+..++..++.++...|++++|++.+++++..+|.+. ..+..
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3456788888888888888888888888888888888888888888888888888888888888777653 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++...|++++|+..|+++++..|++..++..++.++...++ +++|+..++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~ 238 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALE 238 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 78888888888888888888888888888888888888755554 677777776
No 95
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-10 Score=101.07 Aligned_cols=143 Identities=38% Similarity=0.486 Sum_probs=121.0
Q ss_pred ccccccCchhHHHhhhcHH-HHHH---HHHHhccccccceeCC-cEEEEeCccccCCC-CChhhhhhccCCC--CCCCCC
Q 011465 295 SMNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEG 366 (485)
Q Consensus 295 ~~~~~~~f~~e~~~~~~~~-~~~~---~~~~f~~lPl~~~i~~-~~~~vHgGi~~~~~-~~~~~i~~~~r~~--~~~~~~ 366 (485)
.++..+|+..++..+++.. .|.. +.++|+.+|+.+++++ .++|.|||+ ++.. ..+++++.+.|.. +....+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g 80 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAG 80 (155)
T ss_pred hhhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCcc
Confidence 3456678888877777654 5666 9999999999999998 999999999 5544 6788888888875 667777
Q ss_pred cccccccCCCCC--CCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCC
Q 011465 367 LMCELLWSDPQP--LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 439 (485)
Q Consensus 367 ~~~~llw~dp~~--~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~ 439 (485)
...+.+|++|.. ...|.+++||.+..+ .+....|+..+..+.+.|+|+..+.++...+.+..+|.||+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 81 HTHDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred ccccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 888889999986 468899999999877 888999998888888999999999999988886899999999986
No 96
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=2.6e-09 Score=108.63 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
+....++..++..+...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..++++++.+|++..++
T Consensus 138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence 34445555666666666666666666666666555432 2344556666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAV 129 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 129 (485)
..+|.++...|++++|++.++++++..|.+ ..++..++.++...
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 666666666666666666666666555544 23344455555333
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.6e-09 Score=107.10 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
+....++|..|..++..|++++|...++..++..|+|+.++...+.++...++.++|.+.+++++.++|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
+|.+.|++++|+..+++.+..+|+++..|..++++|..+|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999888764
No 98
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=5.6e-10 Score=108.55 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
-++.++.+.|++.+..|++++|.+.|++||..+.....+++++|..+..+|+.++|+++|-+.-.+--+++++++.++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35667888999999999999999999999999999999999999999999999999999999877777899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc--ccc
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA--RIE 169 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~--~l~ 169 (485)
|..+.+..+|++.+.++..+-|++|..+..++.+|..-|.. ..|..++- .+..-.|-.... ++.
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk--sqafq~~y------------dsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK--SQAFQCHY------------DSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch--hhhhhhhh------------hcccccCcchHHHHHHH
Confidence 99999999999999999999999999999999999666653 45554433 233223332222 333
Q ss_pred CCcccHHHHHHHHHhhhhcccchHHHHHH
Q 011465 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQ 198 (485)
Q Consensus 170 ~~~l~~~~l~~lie~l~~~~~l~~~~~~~ 198 (485)
.-++..++.++.+..+.+...+.+.....
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 33455566777777777666666555443
No 99
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=3.3e-10 Score=88.64 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=74.0
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 011465 26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~~p~--~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 103 (485)
.+|+|+.|+..|+++++.+|. +..+++.+|.|+++.|++++|+..+++ ...+|.+...++.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 011465 104 DFQQV 108 (485)
Q Consensus 104 ~~~~a 108 (485)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1e-09 Score=105.95 Aligned_cols=120 Identities=30% Similarity=0.528 Sum_probs=107.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.++....+...|+..++.|+|.+|.+.|..||.++|++ +..|.++|.+..++|+..+|+..++.|+.+||....++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 46778889999999999999999999999999999985 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
...|.|+..+++|++|.++|++|++...+ .+....+..+...++
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999998776 555555554444443
No 101
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.3e-09 Score=98.97 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~~al~~~p~~~~~ 84 (485)
..+|++++-|..+|.+|+.+|+++.|...|.+|+++.|+++..+..+|.++.... ...+|.+.+++++.+||.+..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3578999999999999999999999999999999999999999999999987654 3679999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011465 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (485)
.+.||..+...|+|.+|...+++.+...|.+..-...+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999999998776544333
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=1.7e-09 Score=92.86 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=92.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 41 IELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 41 l~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
..+. ++.-...+.+|..++..|++++|...|+.+..++|.+...|+.||.++..+|+|++|+..|.+|+.++|++|..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHhhcCCc
Q 011465 120 QKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 120 ~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+.+.|+..+++ .+.|...++
T Consensus 107 ~~ag~c~L~lG~--~~~A~~aF~ 127 (157)
T PRK15363 107 WAAAECYLACDN--VCYAIKALK 127 (157)
T ss_pred HHHHHHHHHcCC--HHHHHHHHH
Confidence 999999988877 466666666
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=1.1e-08 Score=96.75 Aligned_cols=194 Identities=18% Similarity=0.166 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
..+......++..||...|++...+.|++.|.++..+..++.||...|+...|+..++.+-++..++.+.++.++.+++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 44555666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCcc-
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVI- 173 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l- 173 (485)
.|+.+.++...+.+++++|+....+.....+....+. .+-+.+..+...|..+.....+.++.+|.-...+++.-.+
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~--les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS--LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 9999999999999999999987665544444433333 3444444555567777777778888888866655543211
Q ss_pred -----cHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcC
Q 011465 174 -----TLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL 210 (485)
Q Consensus 174 -----~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~e 210 (485)
..+.+.+++...++...+.++++..+|+.|...+..+
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 2234566666666666677777777777776655443
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=4.5e-09 Score=96.41 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=120.6
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+|++..+ ..++..++..|+-+.++....+++..+|.+......+|...+..|++.+|+..+.++..+.|+++++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 35666777 89999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.+|.+.|++++|...|.+++++.|.++.+..+++..+..-++ ++.|..+..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~lll 192 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLLL 192 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999966665 677776665
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.3e-09 Score=80.71 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=34.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
.+|..++..|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 106
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.7e-10 Score=111.09 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=139.2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+.+-.|+..|..|+..|++.+|..+|.+|..++|....+|...|..+...++.++|+.+|..|-++-|..-...+.
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY 385 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY 385 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence 34688889999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc-------------------------
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE------------------------- 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~------------------------- 142 (485)
+|.-|.+++.++-|.+.|.+|+.+.|.+|-+...+|.+....+. +.+|..+++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~--y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE--YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh--hHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 88888888999999999999999888888877777766543332 344443332
Q ss_pred ----cccccccccccccccccCCCCCCccccCCc--ccHHHHHHHHHhhhhcccchH
Q 011465 143 ----SERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHK 193 (485)
Q Consensus 143 ----~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~--l~~~~l~~lie~l~~~~~l~~ 193 (485)
.+.+.+|+..+++++.+.|....++-..+. .....++.+++.+.+..-+.+
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 123344555555677766666555433322 233456666666666554444
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.3e-09 Score=107.28 Aligned_cols=133 Identities=20% Similarity=0.309 Sum_probs=114.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---ChHHHHHHH
Q 011465 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----PR---YPKGYYRRG 89 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~----p~---~~~~~~~lg 89 (485)
...+|..|...++++.|.+.|.+|+.+.|.++..+..+|.+.+..+.|.+|+.+|+.++..- ++ ....+.+||
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 34567777888888888888888888899999999999999999999999999999988432 22 235688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
.++.+++++++|+..|++++.+.|.+++++..+|.++..+|+ ++.|+..+. +++.+.|+.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn--ld~Aid~fh------------KaL~l~p~n 522 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN--LDKAIDHFH------------KALALKPDN 522 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--hHHHHHHHH------------HHHhcCCcc
Confidence 999999999999999999999999999999999999988887 789999888 888887765
No 108
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.5e-09 Score=80.42 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 52 ~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999986
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.4e-08 Score=92.45 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|.........|..+-..|.+++|+++|+..++.+|.+..++-..-.+...+|+.-+|++.+..-++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 44455666778888999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-hhHHHhhcCCccccccccccccccccccCCCCCCccc
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK-LKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 168 (485)
+|...|+|++|.-+|+..+-+.|.++-.+..++.++...+. .+..-|..+|+ +++++.|.+..+..
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~------------~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE------------RALKLNPKNLRALF 229 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHhChHhHHHHH
Confidence 99999999999999999999999999999999998876654 34555666666 88888775544443
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=8.7e-09 Score=110.60 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=104.9
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
-.|+.+.+...+|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|++.|++++..+|+++.++..+
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
|.++...|+.++|...|++|++...+-...
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999987665544
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.97 E-value=2.5e-09 Score=103.77 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.++..+......+...++++++.+.++++.... +.++.+|..+|.++.+.|+.++|+.++++|++++|+++.+...++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455667777888999999999999999987655 678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...|+++++.+.++...+..|+++..+..++.++..+++ .++|+..++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~ 238 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE 238 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence 999999999999999999988889999999999999988887 689999888
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.96 E-value=2.4e-08 Score=95.06 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHH
Q 011465 13 RAEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (485)
Q Consensus 13 ~a~~~~~lg~~~-~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~ 85 (485)
....+|..|..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346778888876 66899999999999999999998 5899999999999999999999999999998874 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
+.+|.++..+|++++|...|+++++..|++..+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999987654
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.95 E-value=2.2e-08 Score=94.54 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~---~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~ 85 (485)
..++.++..|..++..|+|++|++.|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3567789999999999999999999999999999986654 899999999999999999999999999986 5678
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhHHHhhcCCccc
Q 011465 86 YRRGAAYLAMGK------------------FKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESE 144 (485)
Q Consensus 86 ~~lg~~~~~~g~------------------~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 144 (485)
+.+|.++..+++ ..+|+..|++.++..|++. ++...+..+...+.+.++.-|.-+++.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988765541 3578899999999999884 5677778888888888787787788877
Q ss_pred cccccccccccccccCCC
Q 011465 145 RHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~ 162 (485)
.+..|+..+..+++-.|+
T Consensus 190 ~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred chHHHHHHHHHHHHHCCC
Confidence 777777776666654443
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=7.5e-09 Score=113.10 Aligned_cols=129 Identities=11% Similarity=0.001 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH-
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR- 88 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l- 88 (485)
.|..++..+..+...+++|+++.|++.|+++++.+|.++.+...++.++...|+.++|+.++++++ +|.+...+..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~lla 107 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLAS 107 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHH
Confidence 466788999999999999999999999999999999997555588889999999999999999999 55554444444
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 -GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 -g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++..+|++++|++.|+++++.+|++++++..++.++...++ .++|+...+
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~ 160 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQAT 160 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHH
Confidence 8899999999999999999999999999999877777755544 677777766
No 115
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=1.3e-08 Score=112.35 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=119.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+.++........++.-.|+.++|++.+.++...+|..+.++..+|.++...|++++|++.++++++++|.++.++..+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555666677778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++...|++++|+..++++++..|+++. +..++.++...++ +++|+..++
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~ 140 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT 140 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence 99999999999999999999999999999 9999998876665 677777776
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.93 E-value=1.4e-08 Score=110.03 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=128.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-
Q 011465 4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP- 82 (485)
Q Consensus 4 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~- 82 (485)
.....-.|.+..++..+...+...+++++|++..+.+++..|+...+|+.+|.++++.+++.+|... .++...+.+.
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~ 98 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK 98 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc
Confidence 3445667899999999999999999999999999999999999999999999999999988877665 6666655555
Q ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcc-
Q 011465 83 ------------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES- 143 (485)
Q Consensus 83 ------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~- 143 (485)
.+++.+|.||.++|++++|...|+++++++|+|+.+..++|..+... +.++|..++..
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~---dL~KA~~m~~KA 175 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE---DKEKAITYLKKA 175 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998776 47888776652
Q ss_pred -------ccccccccccccccccCCC
Q 011465 144 -------ERHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 144 -------~~~~~a~~~~~~~l~~~~~ 162 (485)
.++........+.++.+|.
T Consensus 176 V~~~i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 176 IYRFIKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred HHHHHhhhcchHHHHHHHHHHhcCcc
Confidence 2344444444455544444
No 117
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.92 E-value=8.5e-08 Score=78.50 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYY 86 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~----~~~~~ 86 (485)
.+.+..+-..|..+...|+.+.|++.|.++|.+.|..+.+|.++++++.-+|+.++|++.+.+|+++..+. ..++.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 45566777889999999999999999999999999999999999999999999999999999999996553 46789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
..|.+|..+|+-+.|...|+.|-++.....
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999999999999876544
No 118
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=2.6e-08 Score=91.69 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY 85 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~ 85 (485)
..++.++..|..++..|+|.+|++.|++.+...|.. +.+.+.+|.+++..|++++|+..+++.+...|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357789999999999999999999999999998875 68899999999999999999999999999999864 588
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhHHHhhcCCcccccccccc
Q 011465 86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS 151 (485)
Q Consensus 86 ~~lg~~~~~~g-----------~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~ 151 (485)
+.+|.+++.+. ...+|+..|+..+...|+++ ++...+..+...+...++.-|.-++..+.+..|..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999877653 34589999999999999985 45667788888888888888888888888888877
Q ss_pred ccccccccCCC
Q 011465 152 IDYQSIEVEPQ 162 (485)
Q Consensus 152 ~~~~~l~~~~~ 162 (485)
.+..+++-.|+
T Consensus 163 r~~~v~~~yp~ 173 (203)
T PF13525_consen 163 RFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHCCC
Confidence 77777765543
No 119
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.88 E-value=6.7e-08 Score=84.96 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=60.8
Q ss_pred eeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCch
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~ 303 (485)
+.+++|+||+...+.++++.... .+.++++||++++|+.+. + .....++.++||||....
T Consensus 2 i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~--~~~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 2 IGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------L--ELKAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred EEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------h--hcCCcEEEEeCCCCCcCC-------
Confidence 78999999999989999887543 457999999999998655 1 224568999999997543
Q ss_pred hHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCcc
Q 011465 304 GEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 342 (485)
Q Consensus 304 ~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi 342 (485)
+..+|....+ +.+++++||..
T Consensus 62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~ 85 (155)
T cd00841 62 ------------------FPILPEEAVLEIGGKRIFLTHGHL 85 (155)
T ss_pred ------------------cccCCceEEEEECCEEEEEECCcc
Confidence 3455644433 34799999865
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.86 E-value=2.8e-08 Score=101.98 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=152.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-- 78 (485)
.++.-+..+..+|..|..++++.+|+..|++|+.+ +|.-+.++.+||.+|...|++++|..++++|+++-
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 34555666677999999999999999999999986 45557889999999999999999999999999862
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhhhhHHHhhcCCccc
Q 011465 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PND---PDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (485)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~~ 144 (485)
|+-+..+.+++.++..++++++|...+++++++- +++ +..+.+++.++...|+ +++|..+++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk--~~ea~~~~k-- 391 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK--YKEAEELYK-- 391 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc--hhHHHHHHH--
Confidence 3345678889999999999999999999999863 233 4567788888877777 788888877
Q ss_pred cccccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhc----CCCcceecCCC
Q 011465 145 RHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA----LPSLVDIDIPD 220 (485)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~----ep~~~~i~~~~ 220 (485)
+++.......+..... ....+..+.....+.+.. ..+..+...+..++.. .|++.....
T Consensus 392 ----------~ai~~~~~~~~~~~~~---~~~~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~~-- 454 (508)
T KOG1840|consen 392 ----------KAIQILRELLGKKDYG---VGKPLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTYL-- 454 (508)
T ss_pred ----------HHHHHHHhcccCcChh---hhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHHH--
Confidence 5665443333321111 112233333333333322 3366777777777732 233332222
Q ss_pred CCceeEecccCCCHHHHHHHHHHc
Q 011465 221 GKHFTVCGDVHGQFYDLLNIFELN 244 (485)
Q Consensus 221 ~~~~~v~GDihG~~~dl~~il~~~ 244 (485)
++..+.+-.|++++...+.+..
T Consensus 455 --nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 455 --NLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred --HHHHHHHHcccHHHHHHHHHHH
Confidence 4778889999999999887654
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.86 E-value=7e-08 Score=80.20 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR 88 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~---~~~~~~~l 88 (485)
.++++.|..+...|+.++|+..|+++++..... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975444 678999999999999999999999999999898 78888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~ 110 (485)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.85 E-value=5.1e-08 Score=101.71 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CC
Q 011465 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--------EYGSAIQDASKAIEI--DP 79 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g--------~~~eAl~~~~~al~~--~p 79 (485)
.+..++..|..++..++ .++|+++|++|++++|+++.++..++.++.... +..++.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 56667888988887655 789999999999999999999999998886542 345666777776664 77
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccccccccccc
Q 011465 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~ 159 (485)
.++.++.-+|..+...|++++|...+++|++++| +..++..+|.++...|+ .++|++.++ +++.+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~------------~A~~L 482 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS------------TAFNL 482 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhc
Confidence 7888999999999999999999999999999999 57899999999977777 689999888 89999
Q ss_pred CCCCCCccccC
Q 011465 160 EPQYSGARIEG 170 (485)
Q Consensus 160 ~~~~~~~~l~~ 170 (485)
+|.+....+..
T Consensus 483 ~P~~pt~~~~~ 493 (517)
T PRK10153 483 RPGENTLYWIE 493 (517)
T ss_pred CCCCchHHHHH
Confidence 99877654433
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=2e-08 Score=103.95 Aligned_cols=127 Identities=16% Similarity=0.085 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
...|...|..+...++.++|.-++.+|-.++|..+..|+..|.++...|++++|.+.|..|+.+||+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45677778888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 94 ~~g~~~eA~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..|+..-|.. .+..+++++|.++++|+.+|.+.+..|+. +.|...+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~--~~Aaecf~ 778 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS--KQAAECFQ 778 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch--HHHHHHHH
Confidence 9998877777 88999999999999999999998777764 45554443
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.8e-08 Score=106.61 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=136.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
+.|+++-++...|.+.+..++|..|+.+|++++.++|.. ++....+|.|+.+++..+.|+..|++|++++|.++.++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 468888999999999999999999999999999999975 6788899999999999999999999999999999999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh-----------------------HHHhhcCC
Q 011465 88 RGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK-----------------------FEEAIAVP 141 (485)
Q Consensus 88 lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----------------------~~~A~~~~ 141 (485)
||.+-.... .+..|...+.++...+|.||.++..++.-+...++.. |..|..+.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 998777654 5678999999999999999999998887664443322 55566667
Q ss_pred ccccccccccccccccccCCCC-CCcccc
Q 011465 142 ESERHSVADSIDYQSIEVEPQY-SGARIE 169 (485)
Q Consensus 142 ~~~~~~~a~~~~~~~l~~~~~~-~~~~l~ 169 (485)
.+|.++.|...|.+++..++++ .-+...
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccc
Confidence 7788889999999999988877 444333
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.84 E-value=1.9e-08 Score=100.68 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=92.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+...|..++..|++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..+++++.++|+++.+++.++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999997776
Q ss_pred hhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011465 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
+ +++|+..++ ++++++|....
T Consensus 85 ~--~~eA~~~~~------------~al~l~P~~~~ 105 (356)
T PLN03088 85 E--YQTAKAALE------------KGASLAPGDSR 105 (356)
T ss_pred C--HHHHHHHHH------------HHHHhCCCCHH
Confidence 6 789988888 88888877644
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1e-07 Score=94.58 Aligned_cols=123 Identities=22% Similarity=0.181 Sum_probs=110.9
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+++..+-..+.++...++..+|++.+++++.++|+.+..+.++|.+|++.|++.+|+..+++.+..+|+++..|..
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
||.+|..+|+-.+|...+...+.+...-..+...+....+..+
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888887776666655555544443
No 127
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=5.8e-08 Score=100.62 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=103.2
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCChHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPKGYY 86 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~--~~~~al~~~p~~~~~~~ 86 (485)
..+..+..|+..|..+..+|++.+|.+.|..|+.++|++......+|.++.+.|+..-|.. .+..|+++||.+.++|+
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 3466778899999999999999999999999999999999999999999999999888877 99999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.+|.++..+|+.++|.++|+.|+++++++|-
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999998874
No 128
>PRK11906 transcriptional regulator; Provisional
Probab=98.78 E-value=8.1e-08 Score=95.74 Aligned_cols=137 Identities=17% Similarity=0.079 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 011465 16 ELKALANEAFRAKK---YSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 16 ~~~~lg~~~~~~g~---~~~A~~~y~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~eAl~~~~~al~~~p~ 80 (485)
.++..|...+..+. .++|+.++.+|+ +++|..+.+|..+|.|++.. .+..+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 55788888776664 467899999999 99999999999999998764 2466889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccC
Q 011465 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (485)
++.++..+|.++...++++.|...|++|+.++|+.+.+++..+.+....|+ .++|....+ ++++++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~------------~alrLs 402 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID------------KSLQLE 402 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHhccC
Confidence 999999999999999999999999999999999999999999999877777 588888877 777777
Q ss_pred CCCCCc
Q 011465 161 PQYSGA 166 (485)
Q Consensus 161 ~~~~~~ 166 (485)
|.-.++
T Consensus 403 P~~~~~ 408 (458)
T PRK11906 403 PRRRKA 408 (458)
T ss_pred chhhHH
Confidence 754443
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=2e-08 Score=89.58 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=92.6
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCC
Q 011465 23 EAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGK 97 (485)
Q Consensus 23 ~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~ 97 (485)
.++-.+++..+...+.+.++.++.+ ..+++.+|.++...|++++|+..+++++.+.|+. +.++.++|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3445566777788887766666655 6778999999999999999999999999987763 4589999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 98 FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 98 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+++|+..|++++++.|.....+..++.++...+
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999987554
No 130
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.77 E-value=1.1e-07 Score=97.86 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=133.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
.....|....+...+|..|..+|+|+.|+..+++|++. .|.-......+|..|..++++.+|+..|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556788888888999999999999999999999998 5666677778999999999999999999999976
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH---HHHHHHHHHHHHhhhhHHHhhcCC
Q 011465 78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-----NDPD---AAQKVKECEKAVKKLKFEEAIAVP 141 (485)
Q Consensus 78 --------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~~~---~~~~l~~~~~~~~~~~~~~A~~~~ 141 (485)
+|.-+.++.+||.+|...|++++|..++++|+.+.. ..++ .+..++.++...++ +++|..++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~ 348 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKLL 348 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHH
Confidence 455577899999999999999999999999998742 2333 34455555544444 77887777
Q ss_pred ccccccccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcC
Q 011465 142 ESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL 210 (485)
Q Consensus 142 ~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~e 210 (485)
. +++++-.+..+.. ..........+...+...++..+ ..++..++..+.+..
T Consensus 349 q------------~al~i~~~~~g~~---~~~~a~~~~nl~~l~~~~gk~~e--a~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 349 Q------------KALKIYLDAPGED---NVNLAKIYANLAELYLKMGKYKE--AEELYKKAIQILREL 400 (508)
T ss_pred H------------HHHHHHHhhcccc---chHHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHhc
Confidence 7 4444322111110 11223334455555555555544 667777776666543
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=8.5e-08 Score=90.23 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----hHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKG 84 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-----~~~ 84 (485)
..+..-+++++|..|+..|-++.|.+.|........--..+...|..+|....++++|++..++.+.+.+.. +..
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 355677889999999999999999999999877666668899999999999999999999999999998864 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011465 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
|+.++..+....+.+.|...+++|++.+|++..+...+|.+. +.++++.+|+..++ .+++.+|.|.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~--~~~g~y~~AV~~~e------------~v~eQn~~yl 248 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE--LAKGDYQKAVEALE------------RVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH--HhccchHHHHHHHH------------HHHHhChHHH
Confidence 899999999999999999999999999999999999999998 45555899988888 6777777665
Q ss_pred C
Q 011465 165 G 165 (485)
Q Consensus 165 ~ 165 (485)
+
T Consensus 249 ~ 249 (389)
T COG2956 249 S 249 (389)
T ss_pred H
Confidence 4
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.77 E-value=4.6e-08 Score=74.06 Aligned_cols=67 Identities=31% Similarity=0.601 Sum_probs=43.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011465 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 55 g~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
..+|...+++++|++++++++.++|+++..|..+|.++..+|++++|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666666666655443
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=102.65 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
.+.+.+.+|...++.++|++|.++++.+++++|-....|+++|.|..+.++++.|..+|.+++.++|++..+|.+++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34455666666777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+++-.+|...+++|++.+-+++..|.+...+....+. +++|+..+.
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~ 611 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH 611 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence 888888888888888888888888888777777655554 677777666
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.76 E-value=7.8e-08 Score=75.08 Aligned_cols=91 Identities=32% Similarity=0.502 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999988666
Q ss_pred hhhhHHHhhcCCc
Q 011465 130 KKLKFEEAIAVPE 142 (485)
Q Consensus 130 ~~~~~~~A~~~~~ 142 (485)
++ +++|...+.
T Consensus 82 ~~--~~~a~~~~~ 92 (100)
T cd00189 82 GK--YEEALEAYE 92 (100)
T ss_pred Hh--HHHHHHHHH
Confidence 65 577766655
No 135
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=3.4e-07 Score=77.40 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~~ 86 (485)
.+..++..|...++.|+|++|++.++......|.. ..+...+|.+|++.+++++|++.+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35689999999999999999999999999887764 68899999999999999999999999999999874 6899
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 011465 87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 87 ~lg~~~~~~g~---------------~~eA~~~~~~al~~~p~~~~~ 118 (485)
..|.+++.+.. ..+|...|++.++.-|++..+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 99999999887 899999999999999998764
No 136
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=6.4e-08 Score=86.14 Aligned_cols=119 Identities=21% Similarity=0.193 Sum_probs=110.0
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+.+.+..++..|..|-+.|-+.-|.--+.+++.+.|+.+.+++.+|.-+...|+|+.|.+.|...+++||.+..++.+
T Consensus 59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.|.+++.-|++.-|.+.+.+-.+.+|+||--..++-...
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999986544444333
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=2.5e-08 Score=74.40 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 25 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
+..|++++|++.|++++..+|++..++..+|.++.+.|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555544444443
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1e-07 Score=101.08 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=99.8
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+-.++.+|.+|+.|..+|+|++|..+|.++++.+|++ ...++.+|+.|...|+++.|..+|++++...|++.+....
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 345667788888888888888888888888888888887 7778888888888888888888888888888888888888
Q ss_pred HHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 88 RGAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 88 lg~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+|.+|...+ .-++|.....++++..|.+.++|..++.++....
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 888888775 5677888888888888888888888887775443
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.7e-08 Score=93.49 Aligned_cols=123 Identities=12% Similarity=0.198 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
.+.++.+..++.+|.+..+...|+..|.+.++..|.+.......|.++..++++++|++.|+.+++++|.+.++.-.+|.
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 44577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (485)
-|+.-++.+-|+.+|++.++..-.+++.+.+++.|....++.+
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 9999999999999999999999999999999999987777643
No 140
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-07 Score=84.37 Aligned_cols=109 Identities=26% Similarity=0.307 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQ----------NAVYYANRAFAHTKLEEYGSAIQDAS 72 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~eAl~~~~ 72 (485)
-....++.+.|+-++++|+|.+|...|..|+.. .|. ....+.|.++|++..|+|-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 445678999999999999999999999999853 243 34678999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
..+..+|++..+|+..|.++...-+.++|...|+++++++|.-..+-
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999999999766543
No 141
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.7e-08 Score=89.73 Aligned_cols=100 Identities=38% Similarity=0.573 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
-+..+...|+.++..+.|..|+..|.+||.++|..+.+|.++|.|++++.+++.+.....+|++++|+...+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 011465 93 LAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~ 112 (485)
.....|++|+..+++|..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997653
No 142
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=7.4e-08 Score=72.92 Aligned_cols=70 Identities=24% Similarity=0.459 Sum_probs=65.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
+...|...+++++|++.++++++++|+++.++..+|.++..+|++++|++.++++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999888766554
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=3.2e-08 Score=88.69 Aligned_cols=87 Identities=20% Similarity=0.344 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011465 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
+..+.+++.+|..+...|++++|+.++++++...|+. ..++..+|.++..+|++++|+..++++++..|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4567789999999999999999999999999987763 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 011465 122 VKECEKAVKK 131 (485)
Q Consensus 122 l~~~~~~~~~ 131 (485)
++.++...++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9999877665
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=4.6e-07 Score=78.69 Aligned_cols=129 Identities=23% Similarity=0.177 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKG 84 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~ 84 (485)
.+.+...+......+..++...+.+.+++.++..|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3456667777778888999999999999999999988 6778889999999999999999999999987664 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+++|.++..+|++++|+..++.. .-.+-.+.++..+|.++...|+ +++|...|+
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~ 142 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD--YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 889999999999999999999663 3334456677888888866555 688887766
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.9e-07 Score=87.92 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHH
Q 011465 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDF 105 (485)
Q Consensus 29 ~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~ 105 (485)
+.++.+.-++.-|+.+|+++.-|..||.+|+.+|++..|+..|.+|+++.|+++..+..+|.+++.+. ...+|...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999999888764 458899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+++++.+|++..+.+.++..+...++ +.+|+...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq 251 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ 251 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 99999999999999999999866555 788888777
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.70 E-value=4.2e-08 Score=73.15 Aligned_cols=67 Identities=25% Similarity=0.430 Sum_probs=61.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011465 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (485)
Q Consensus 58 ~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (485)
+++.|++++|++.|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999888776664
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=2.1e-07 Score=80.82 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
+-...+.+.+|..++..|++++|++.|++++...|+. ..+...+|.++...|++++|+..++. +.-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 3456788999999999999999999999999987665 56888999999999999999999966 3334456778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 011465 88 RGAAYLAMGKFKEALKDFQQVK 109 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al 109 (485)
+|.++...|++++|...|++|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999875
No 148
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.70 E-value=2.6e-07 Score=81.10 Aligned_cols=149 Identities=22% Similarity=0.342 Sum_probs=89.4
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
++.++||+|++...+.++++... ..+.++++||++|+ .+++..+-.. .++.++||||..........
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~~ 68 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNENDE 68 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEECT
T ss_pred EEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhhc
Confidence 48899999999999999999872 35679999999993 6666666333 69999999996553322211
Q ss_pred hhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCC
Q 011465 303 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 382 (485)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~ 382 (485)
. + +.....+ ..-+.+++++||.. ..
T Consensus 69 ~------~----------~~~~~~~-~~~~~~i~~~H~~~-~~------------------------------------- 93 (156)
T PF12850_consen 69 E------Y----------LLDALRL-TIDGFKILLSHGHP-YD------------------------------------- 93 (156)
T ss_dssp C------S----------SHSEEEE-EETTEEEEEESSTS-SS-------------------------------------
T ss_pred c------c----------cccceee-eecCCeEEEECCCC-cc-------------------------------------
Confidence 0 0 1111111 12256899999876 21
Q ss_pred CcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCC-eEEEEecCCCCCCCCCCeEEEEEE
Q 011465 383 GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRF 451 (485)
Q Consensus 383 ~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~-~~~tvfsa~~y~~~~~n~~a~~~~ 451 (485)
...+.+.+.+.+...+.++++-||.-. .+.+..++ .+++.=|.... ..+...+++++
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~GH~H~--~~~~~~~~~~~~~~Gs~~~~--~~~~~~~~~i~ 151 (156)
T PF12850_consen 94 --------VQWDPAELREILSRENVDLVLHGHTHR--PQVFKIGGIHVINPGSIGGP--RHGDQSGYAIL 151 (156)
T ss_dssp --------STTTHHHHHHHHHHTTSSEEEESSSSS--EEEEEETTEEEEEE-GSSS---SSSSSEEEEEE
T ss_pred --------cccChhhhhhhhcccCCCEEEcCCccc--ceEEEECCEEEEECCcCCCC--CCCCCCEEEEE
Confidence 113455677888899999999999964 33333333 33333333221 12236777766
No 149
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.70 E-value=2.3e-07 Score=97.81 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=105.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 011465 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~ 84 (485)
+...+.|..+.+|+.+|.+|-.+|+.++|+.....|-.++|.+.+.|..++....++|.+++|.-+|.+|++.+|.+.+.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
.+..+.+|.++|++..|+..|.+++.+.|
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999
No 150
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.9e-07 Score=89.99 Aligned_cols=132 Identities=18% Similarity=0.088 Sum_probs=121.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+....+++++.|..+-.+|+.++|+++|-+.-.+--+++..++.+|.+|..+.+..+|++++.++..+-|+++..+..|
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 34556789999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.+|-+.|+-.+|..++-...+..|.+.+...+++..|. ...-.++++.+++
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi--dtqf~ekai~y~e 650 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI--DTQFSEKAINYFE 650 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998884 3333688888888
No 151
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.2e-08 Score=94.18 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=87.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------------------------HHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------------------------VYYANR 54 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~----------------------------------~~~~~l 54 (485)
.-|.++..+...|+++...+++++|+++|+.+++.+|.+. +.+.|+
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 4566777777888888888888888888888888777554 456666
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 55 AFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 55 g~~~~~~g~~~eAl~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
|.|.+..++++-++..+++|+....+ -+..|+++|.+....|++..|..+|+-|+..++++.+++.+++.+....|.
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 66666666666666666666654321 245666666666666666666666666666666667777666666533333
Q ss_pred hhHHHhhcCCc
Q 011465 132 LKFEEAIAVPE 142 (485)
Q Consensus 132 ~~~~~A~~~~~ 142 (485)
.++|..++.
T Consensus 445 --i~~Arsll~ 453 (478)
T KOG1129|consen 445 --ILGARSLLN 453 (478)
T ss_pred --hHHHHHHHH
Confidence 455555554
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.67 E-value=2e-07 Score=77.45 Aligned_cols=93 Identities=31% Similarity=0.395 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK 121 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 121 (485)
+..++.+|..+...|++++|+..+++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999886 5789999999999999999999999999999886 567888
Q ss_pred HHHHHHHHhhhhHHHhhcCCc
Q 011465 122 VKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 122 l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.++...++ .++|...+.
T Consensus 82 ~~~~~~~~~~--~~~A~~~~~ 100 (119)
T TIGR02795 82 LGMSLQELGD--KEKAKATLQ 100 (119)
T ss_pred HHHHHHHhCC--hHHHHHHHH
Confidence 8988866555 677777776
No 153
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=8.5e-07 Score=82.65 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~l 88 (485)
..+|+.|..+++.|+|..|.+.|..-++..|++ +.+++-||.+++.+|+++.|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 448999999999999999999999999999885 7899999999999999999999999999998875 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (485)
|.+...+|+.++|...|+++++..|+.+.+....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999998875433
No 154
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.65 E-value=3.5e-07 Score=84.96 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=73.5
Q ss_pred ceeEecccCCCHHHHH-HHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccc--
Q 011465 223 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI-- 299 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~-~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~-- 299 (485)
++.++||+||++.... ..++. . ..+.++++||+++. +.+++..|..+ |..++.++||||.......
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~--~--~pD~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~ 70 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHL--L--QPDLVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYDATFRK 70 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhc--c--CCCEEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCcccccccccc
Confidence 4889999999987642 23332 2 23579999999864 56766666554 3458889999997553210
Q ss_pred ------------------cC------------------------c-hhHHHhhhc-HHHHHHHHHHhccccccceeCCcE
Q 011465 300 ------------------YG------------------------F-EGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 335 (485)
Q Consensus 300 ------------------~~------------------------f-~~e~~~~~~-~~~~~~~~~~f~~lPl~~~i~~~~ 335 (485)
++ + ..+++..|+ .+..+.+...++.++.+......|
T Consensus 71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V 150 (238)
T cd07397 71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI 150 (238)
T ss_pred hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence 00 1 124555663 356788888899997555555689
Q ss_pred EEEeCcc
Q 011465 336 FVVHGGL 342 (485)
Q Consensus 336 ~~vHgGi 342 (485)
|+.|+++
T Consensus 151 liaH~~~ 157 (238)
T cd07397 151 LLAHNGP 157 (238)
T ss_pred EEeCcCC
Confidence 9999998
No 155
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.64 E-value=9.4e-07 Score=77.95 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=45.5
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++.+++|+||+...+..+++........+.++++||++ +.+++..+..+. ..++.++||||..
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 48899999999977666555443332456799999999 456776665442 2488999999973
No 156
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.63 E-value=1.4e-07 Score=93.90 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+|+++.+++++|.+|+.+|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555554432 555555555555555555555555544
No 157
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=7.1e-07 Score=84.16 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..++..+-.+|....+|++|++.-++..++.+.. +..|+.+|..+....+.+.|...+.+|++.+|....+-..+
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence 4567777888888888888888888877777654 56677888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhh
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKL 132 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~ 132 (485)
|.+....|+|+.|++.++.+++.+|+. +++...+..||..+++.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 888888888888888888888887765 45677777788777763
No 158
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.62 E-value=2e-07 Score=92.85 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
.+...|+.+.+++++|..|+..|+|++|++.|++||+++|+++.+ |+++|.+|..+|++++|++++++|+++
T Consensus 67 ~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 67 GSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345679999999999999999999999999999999999999865 999999999999999999999999998
No 159
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=4e-07 Score=91.36 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCChHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYYR 87 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al----~~~p~~~~~~~~ 87 (485)
+..+.....|..+...|++++|++.++++++.+|++..++.. +..+...|.+..+.....+++ ..+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 445667788999999999999999999999999998877664 444444444333333333333 445555666667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++..+|++++|...+++++++.|+++.++..++.++...++ +++|+..++
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~ 172 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFME 172 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 77777788888888888888888888777777777777755554 577776666
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.61 E-value=8.4e-07 Score=88.59 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred CCchhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011465 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~ 78 (485)
..+|..+.++..+|.+++.. .+..+|++..++|++++|.|+.+...+|.++...++++.|...+++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 44677888888888888754 245678999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011465 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
|+.+.+|+..|.+..-.|+.++|.+..++|++++|.-..+.
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 99999999999999999999999999999999999765543
No 161
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-07 Score=86.16 Aligned_cols=111 Identities=31% Similarity=0.490 Sum_probs=99.3
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 011465 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~ 82 (485)
+.+.-+.|..+...|+.|++.++|..|+..|.++|+..-. ++..|.|+|.|.+.+|+|..|+..+.+|+.++|.+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 3445568889999999999999999999999999998544 467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.++++-|.|++.+.++++|..+++..++++-+...
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 99999999999999999999999998877654433
No 162
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.60 E-value=6.1e-07 Score=78.29 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--
Q 011465 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-- 97 (485)
Q Consensus 30 ~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 97 (485)
++.|.+.++.....+|.+++++++-|.++..+.+ +++|+.-|++|+.++|+...+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999998887644 5678899999999999999999999999999864
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 98 ---------~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
|++|..+|++|...+|++......|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 68899999999999999988777666554
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.60 E-value=5e-07 Score=92.59 Aligned_cols=129 Identities=15% Similarity=0.059 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYY 86 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~--~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~--~~~~ 86 (485)
++++..+..+|..+...|++++|++.++++++..|++.... ..+.......++.+++++.++++++.+|+++ ....
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 35788999999999999999999999999999999987532 2233334456888999999999999999999 8888
Q ss_pred HHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 87 RRGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|.++.+.|++++|.++|+ ++++..|++.. ...++.++...++ .++|..+++
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999 68788887766 5599999977777 577777666
No 164
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.60 E-value=6.8e-07 Score=97.96 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
....+..+|..+..+|++++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..+|++... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 345555568899999999999999999999999999999999999999999999999999999999986554 5566666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
...++..+|++.++++++.+|++.+++..+..++...+.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 667888789999999999999999998888777765554
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=6e-07 Score=90.07 Aligned_cols=100 Identities=18% Similarity=0.111 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYYR 87 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~----~~~~~ 87 (485)
.....+..+|..+..+|++++|++.++++++++|+++.++..+|.++...|++++|+..+++++...|..+ ..|..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 33344444444555555555555555555555555555555555555555555555555555554443221 12334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+|.++..+|++++|+..|++++..
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc
Confidence 455555555555555555544433
No 166
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.55 E-value=2.8e-06 Score=87.10 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGA 90 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~-~~~~~lg~ 90 (485)
+++......|...+..|+++.|.+...++.+..|+....+...|.++.+.|++++|..++.++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 45666788899999999999999999999999999889999999999999999999999999999999886 46666799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++...|++++|...+++.++..|+++.++..++.++...++ +++|...++
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~ 211 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID 211 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999966665 677777766
No 167
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.55 E-value=7e-07 Score=91.11 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..++++.....+|..+...|+.++|.+.++++++ .|.++.....++.+ ..++.+++++.+++.++.+|+++..+..+
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3466788999999999999999999999999999 45566665555554 45999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++...+++++|.++|+++++..|++.. +..++.++...++ .++|..+++
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999998765 5578888877776 578877777
No 168
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.54 E-value=1e-06 Score=75.54 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=77.5
Q ss_pred eeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChH--HHHHHHHhchhcCCCcEEEeccCCCccccccccC
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (485)
+.+++|+||+.. .+ . ....+.++++||++++|..+- +.+.++..++ .| .+++++||||....
T Consensus 2 i~~isD~H~~~~----~~---~-~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~----- 65 (135)
T cd07379 2 FVCISDTHSRHR----TI---S-IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD----- 65 (135)
T ss_pred EEEEeCCCCCCC----cC---c-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC-----
Confidence 789999999987 11 1 123567999999999986532 2334443332 22 36779999996422
Q ss_pred chhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCC
Q 011465 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG 381 (485)
Q Consensus 302 f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~ 381 (485)
.-+.+++++||.+ .+. .+..+.
T Consensus 66 ----------------------------~~~~~ilv~H~~p-~~~----------------------~~~~~~------- 87 (135)
T cd07379 66 ----------------------------PEDTDILVTHGPP-YGH----------------------LDLVSS------- 87 (135)
T ss_pred ----------------------------CCCCEEEEECCCC-CcC----------------------cccccc-------
Confidence 1255899999754 210 000000
Q ss_pred CCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 382 RGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 382 ~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
....|.+.+.+++++.+.+.+|-||.-...|++
T Consensus 88 --------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 88 --------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred --------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 123677889999999999999999999887776
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3e-06 Score=77.54 Aligned_cols=140 Identities=19% Similarity=0.083 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
+.=..+-+..-+.+..++.+.|..++++.-...|.+...--..|..+...|.+++|+++|+..++-||.+...+-+.-.+
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 33344556667788889999999999998888899999999999999999999999999999999999999999998889
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
...+|+--+|++.+...+...+.|+++|..++.+|...+. |++|.-.++ ..+.+.|....
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~--f~kA~fClE------------E~ll~~P~n~l 189 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD--FEKAAFCLE------------ELLLIQPFNPL 189 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH--HHHHHHHHH------------HHHHcCCCcHH
Confidence 9999999999999999999999999999999999966665 899999998 66666665433
No 170
>PRK09453 phosphodiesterase; Provisional
Probab=98.53 E-value=3.3e-07 Score=82.91 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=51.2
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCC--------hHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~--------s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++.+++|+||+...+.++++.... ...+.++++||++|+|+. ..+++..|..+ +..+++++||||..
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~-~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~GNhD~~ 76 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQ-SGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRGNCDSE 76 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHh-cCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEccCCcch
Confidence 478999999999998888876532 234579999999999874 45566555433 34689999999974
Q ss_pred c
Q 011465 295 S 295 (485)
Q Consensus 295 ~ 295 (485)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 3
No 171
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=5.5e-07 Score=91.91 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|+..+.+..+|..+...|+-++|......+++.++.+...|.-+|.++....+|++|+.+|+.|+.++|+|...|.-++.
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
...++++++-....-.+.++..|.....|...+.++...+.
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544444
No 172
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.5e-06 Score=84.47 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=113.2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----------------------------------HHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----------------------------------YAN 53 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~----------------------------------~~~ 53 (485)
..-+.+...+..+|.+++..|++.+|+-.|+++.-++|..... |+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 4457788899999999999999999999999999999876433 333
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 011465 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (485)
Q Consensus 54 lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (485)
-|...+..++++.|+.+-++++..+|.+.+++...|.++.++++.++|+-.|+.|..+.|.+-+.+..+-.+|...++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~-- 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR-- 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--
Confidence 444556677888999999999999999999999999999999999999999999999999999999888888865555
Q ss_pred HHHhhcCCc
Q 011465 134 FEEAIAVPE 142 (485)
Q Consensus 134 ~~~A~~~~~ 142 (485)
+.+|.....
T Consensus 384 ~kEA~~~An 392 (564)
T KOG1174|consen 384 FKEANALAN 392 (564)
T ss_pred HHHHHHHHH
Confidence 677766544
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=2.8e-06 Score=85.12 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=104.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 011465 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 101 (485)
..+...++++.|++.+++..+.+|+ +...++.++...++-.+|++.+.+++..+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445668999999999999888765 5667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..++|....|++...|..|+.+|..+++ ++.|+....
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALN 292 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHh
Confidence 999999999999999999999999977666 789887666
No 174
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=3.8e-07 Score=70.01 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
|..+.++..+|.+|..+|++++|++.|++++++. |..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455566666666666666666666666666441 112344555555555555555555555555543
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1e-06 Score=91.06 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHccC
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA----------------------------HTKLEE 63 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~----------------------------~~~~g~ 63 (485)
+....|.....+|...|+..+|.+...+-++ .|.++..|..+|.+ ....++
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 3455666677777777777777777777776 44455555544443 344689
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|++|..+++..++++|-....|+.+|.+..++++++.|.++|.+++.++|++.++|.+++.+|..+++. .+|.....
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k--~ra~~~l~ 577 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK--KRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh--HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999777764 44444443
No 176
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=1.3e-06 Score=89.21 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
-|..-..++..+.-.+..++|.+.++..++.|+..|.+.+.....|..+..+|+-++|..+.+.++..|+.+..+|.-+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 34556688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
.++....+|++|+++|+.|+.++|+|...+.-++.+..++++.
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888777764
No 177
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.3e-07 Score=87.47 Aligned_cols=144 Identities=20% Similarity=0.159 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
..+.-|+--|...+..++++.|+.+-+++|+.+|.+..++...|.++..+++.++|+-+|+.|..+.|...+.|--|-.+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccc
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 168 (485)
|...|++.||...-+.++...|.++.++..+| .++..-... -++|..+++ +++.++|.|.++-+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~-rEKAKkf~e------------k~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM-REKAKKFAE------------KSLKINPIYTPAVN 442 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh-HHHHHHHHH------------hhhccCCccHHHHH
Confidence 99999999999999999999999999888875 433222111 366666666 88889998887744
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.47 E-value=1.7e-07 Score=73.20 Aligned_cols=79 Identities=33% Similarity=0.531 Sum_probs=68.9
Q ss_pred ccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhh
Q 011465 61 LEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138 (485)
Q Consensus 61 ~g~~~eAl~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~ 138 (485)
.|++++|+..++++++.+|. +...++.+|.||+++|++++|+..+++ ...+|.+......+|.|+..+++ +++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHHH
Confidence 68999999999999999995 466788899999999999999999999 88888888999999999977777 78998
Q ss_pred cCCc
Q 011465 139 AVPE 142 (485)
Q Consensus 139 ~~~~ 142 (485)
..++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.9e-06 Score=84.11 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
...+.++|.++.+.++|.+|++...++|+.+|++..+++.+|.++..+|+|+.|...|++|++++|+|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HcCCHHHH-HHHHHHHHHhCC
Q 011465 94 AMGKFKEA-LKDFQQVKKLSP 113 (485)
Q Consensus 94 ~~g~~~eA-~~~~~~al~~~p 113 (485)
+..++.+. .+.|.+++...+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 87777665 667777776544
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=2.2e-06 Score=89.65 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=93.6
Q ss_pred CCchhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 8 NSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~--------g~~~~A~~~y~~al~~--~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
..+|+.+.++..++.++... .+.++|.+...+++.+ +|.++.++..+|..+...|++++|...+++|+++
T Consensus 370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34677788888877766543 2345666777776664 7888899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011465 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
+| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99 58899999999999999999999999999999999863
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.6e-06 Score=86.86 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
++....++.++...++..+|++.+.++++..|.++..+...|..+...++++.|+...++|+.+.|++-.+|+.|+.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHH
Q 011465 94 AMGKFKEALKDFQQV 108 (485)
Q Consensus 94 ~~g~~~eA~~~~~~a 108 (485)
.+|++++|+..++.+
T Consensus 280 ~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 280 QLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHhcC
Confidence 999999999887744
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=2.8e-07 Score=70.78 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DP----RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~---~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
|+-+.++.++|.+|..+|++++|+++|++++.+ .+ ..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999976 12 23668999999999999999999999999976
No 183
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=98.42 E-value=6e-07 Score=70.83 Aligned_cols=94 Identities=54% Similarity=0.949 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHH
Q 011465 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVL 201 (485)
Q Consensus 122 l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~ 201 (485)
+..|...+.+..|++|++. +....+.+.......+.+++.|.++++....++.+++..+++.|+.++.++.+++..++.
T Consensus 2 l~ec~k~ir~~~FekAI~~-d~~~~s~~e~~d~~~i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~ 80 (95)
T PF08321_consen 2 LKECEKLIRRIAFEKAIAV-DEEKKSVSESIDLESIDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILL 80 (95)
T ss_dssp HHHHHHHHHHHHHSHHHHH-HHHHHSTTTS-TTSTT---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCcccCHHHhcCccceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4567777888889999998 322333444556678889999999999966799999999999999999999999999999
Q ss_pred HHHHHhhcCCCccee
Q 011465 202 QTREMLRALPSLVDI 216 (485)
Q Consensus 202 ~a~~~l~~ep~~~~i 216 (485)
.+.++|+++|+++++
T Consensus 81 ~~~~llk~~PslVeI 95 (95)
T PF08321_consen 81 EAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHTS-SEEEE
T ss_pred HHHHHHHhCcCccCC
Confidence 999999999999864
No 184
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=8.8e-06 Score=83.07 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCChHHH-HHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPKGY-YRR 88 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~l-g~~~~~~g~~~eAl~~~~~al~~~p~~~~~~-~~l 88 (485)
.+++...+..|...+..|||++|.+...++-+..+. +..++.+ +.+..+.|++++|..++.++.+.+|++..+. ...
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345667788899999999999999888876665433 4444444 6666999999999999999999999885443 455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.++...|++++|...++++.+..|+++.++..++.++...++ +++|+.++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~ 211 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP 211 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 9999999999999999999999999999999999999966655 688887766
No 185
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.39 E-value=3.3e-06 Score=70.97 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=82.5
Q ss_pred eEecccCCCHHHHHHHH--HHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 225 TVCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 225 ~v~GDihG~~~dl~~il--~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
+++||+|+......... .. ......+.++++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~-~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAAL-AAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHH-hcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 36899999998888754 22 122334569999999999998877766644444556788999999999
Q ss_pred hhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCC
Q 011465 303 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 382 (485)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~ 382 (485)
++++|.++ .+...... +.
T Consensus 70 --------------------------------i~~~H~~~-~~~~~~~~---------------------~~-------- 87 (131)
T cd00838 70 --------------------------------ILLTHGPP-YDPLDELS---------------------PD-------- 87 (131)
T ss_pred --------------------------------EEEeccCC-CCCchhhc---------------------cc--------
Confidence 99999877 21110000 00
Q ss_pred CcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 383 GPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 383 ~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
.......+...+...+...+|-||.-....+.
T Consensus 88 --------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 88 --------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 00056788899999999999999998655554
No 186
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=4.3e-06 Score=91.07 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------------- 77 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------------- 77 (485)
+++-.+++.+|.+|-+.|++++|.+.|+++|+.+|+++.+..++|..|... +.++|++++.+|+..
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 444579999999999999999999999999999999999999999999999 999999999999865
Q ss_pred -------CCCChHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 78 -------DPRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 78 -------~p~~~~~--------------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+|++... +.-+-..|...++|++++..++.++..+|+|..+...++.||...=
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY 271 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY 271 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc
Confidence 4444332 2222377888899999999999999999999999999999986321
Q ss_pred --hhhHHHhhcCCcc
Q 011465 131 --KLKFEEAIAVPES 143 (485)
Q Consensus 131 --~~~~~~A~~~~~~ 143 (485)
...+++.+.....
T Consensus 272 ~~~~~~ee~l~~s~l 286 (906)
T PRK14720 272 KDHSLLEDYLKMSDI 286 (906)
T ss_pred cCcchHHHHHHHhcc
Confidence 1135555555443
No 187
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.38 E-value=2.6e-08 Score=98.65 Aligned_cols=240 Identities=14% Similarity=0.011 Sum_probs=173.8
Q ss_pred chHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHH
Q 011465 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI 270 (485)
Q Consensus 191 l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l 270 (485)
+.......+++.+.+++..+|+...+........+.++|.||++.|+.+..+.. |.-..-|++.|++++++....+.+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence 344557788899999999999998887777677899999999999999999863 555567999999999999999999
Q ss_pred HHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcH---HHHHHHHHHhccccccceeCCcEEEEeCccccCCC
Q 011465 271 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG 347 (485)
Q Consensus 271 ~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~---~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~ 347 (485)
..+...+...|+...+.|++||+..+...++|..++...+++ .+...+...+- -|+...+++.++=-| -+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~-~~i~~~y~g~~le~~-kv----- 165 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDM-DLIESDYSGPVLEDH-KV----- 165 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccc-cccccccCCcccccc-hh-----
Confidence 999999999999999999999999999999999888877743 23322222111 124555453333222 22
Q ss_pred CChhhhhhc-------------------------cCCCCCC-CCCcccccccCCCCCCCC-CCcCCCCCccccCHHHHHH
Q 011465 348 VKLSDIKTI-------------------------DRFCEPP-EEGLMCELLWSDPQPLPG-RGPSKRGVGLSFGADVTKR 400 (485)
Q Consensus 348 ~~~~~i~~~-------------------------~r~~~~~-~~~~~~~llw~dp~~~~~-~~~~~rg~~~~fg~~~~~~ 400 (485)
+++.+..+ .+-.++. +..+-.+..|++|...-| +.+..|+.+...+++....
T Consensus 166 -t~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ 244 (476)
T KOG0376|consen 166 -TLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNP 244 (476)
T ss_pred -hHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCccc
Confidence 22221111 1111111 112446788999887765 5567888888899999999
Q ss_pred HHHHCCCcEEEeecccc------------ccCcEEec---CCeEEEEecCCCCCC
Q 011465 401 FLQDNSLDLVVRSHEVK------------DEGYEIEH---DGKLITVFSAPNYCD 440 (485)
Q Consensus 401 fl~~~~~~~iir~h~~~------------~~G~~~~~---~~~~~tvfsa~~y~~ 440 (485)
||.+.++.-+++.|.-+ ..+|...+ .+.+++||+.+.++.
T Consensus 245 ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 245 YLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred ccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 99999999999999843 22332222 235899999998773
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=98.35 E-value=1.8e-06 Score=74.66 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=90.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011465 41 IELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 41 l~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
..+.++.-...+..|.-++..|++++|...|+-....+|.++..|+.||.|+..+++|++|+..|..|..++++||...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33455567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHhhcCCc
Q 011465 121 KVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 121 ~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.+.|+..+++ .+.|...++
T Consensus 110 ~agqC~l~l~~--~~~A~~~f~ 129 (165)
T PRK15331 110 FTGQCQLLMRK--AAKARQCFE 129 (165)
T ss_pred hHHHHHHHhCC--HHHHHHHHH
Confidence 99999988877 577777666
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=1.3e-06 Score=92.86 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=109.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH------------------------------------HHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY------------------------------------YAN 53 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~------------------------------------~~~ 53 (485)
.+.-+.++..+|..|..--|...|..+|.+|.++|+.++.+ |..
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 45566778888888888888888888888888888876543 445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhh
Q 011465 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (485)
Q Consensus 54 lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 133 (485)
+|..|...+++.+|+..++.|++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+..+.+..+.....+|+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-- 645 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-- 645 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh--
Confidence 666666777788889999999999999999999999999999999999999999999999999998888888866666
Q ss_pred HHHhhcCCc
Q 011465 134 FEEAIAVPE 142 (485)
Q Consensus 134 ~~~A~~~~~ 142 (485)
+.+|+..+.
T Consensus 646 Ykeald~l~ 654 (1238)
T KOG1127|consen 646 YKEALDALG 654 (1238)
T ss_pred HHHHHHHHH
Confidence 677777665
No 190
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.34 E-value=6.5e-06 Score=84.21 Aligned_cols=128 Identities=11% Similarity=-0.016 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
....|+.-++....+++.++|+.+++++|+..|+....|..+|+++.++++.+.|.+.|...++..|.....|..++.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 34566777777778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...|+.-.|...+.++...+|++...|...-......|. .+.|..+..
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn--~~~a~~lma 777 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN--KEQAELLMA 777 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999988877666555544444 344444443
No 191
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.32 E-value=3e-05 Score=69.68 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=72.3
Q ss_pred eeEecccC-CCHH-----HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccc
Q 011465 224 FTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297 (485)
Q Consensus 224 ~~v~GDih-G~~~-----dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 297 (485)
+.|++|.| |.-. .+.++++. ...+.++.+||+++ .+++.++..+. ..++.++||||...
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~-- 66 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL-- 66 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc--
Confidence 78999999 5543 34555543 23457999999986 67776665542 25889999999631
Q ss_pred cccCchhHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccC
Q 011465 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 374 (485)
Q Consensus 298 ~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~ 374 (485)
.+|....+ +.+++++||..-.+ |
T Consensus 67 --------------------------~lp~~~~~~~~g~~i~l~HG~~~~~---------------------------~- 92 (178)
T cd07394 67 --------------------------NYPETKVITVGQFKIGLIHGHQVVP---------------------------W- 92 (178)
T ss_pred --------------------------cCCCcEEEEECCEEEEEEECCcCCC---------------------------C-
Confidence 35544433 45999999743000 0
Q ss_pred CCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccc
Q 011465 375 DPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 418 (485)
Q Consensus 375 dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~ 418 (485)
.+.+.+.++.+..+.+.+|-||+-.+
T Consensus 93 ------------------~~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 93 ------------------GDPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred ------------------CCHHHHHHHHHhcCCCEEEECCCCcc
Confidence 02345677778899999999999754
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=6.2e-06 Score=78.60 Aligned_cols=93 Identities=26% Similarity=0.170 Sum_probs=81.4
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 011465 48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ 120 (485)
Q Consensus 48 ~~~~~~lg~~~-~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 120 (485)
....+..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 56799999999999999999998 5799999999999999999999999999998875 67888
Q ss_pred HHHHHHHHHhhhhHHHhhcCCc
Q 011465 121 KVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 121 ~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++.++..+++ .++|...++
T Consensus 222 klg~~~~~~g~--~~~A~~~~~ 241 (263)
T PRK10803 222 KVGVIMQDKGD--TAKAKAVYQ 241 (263)
T ss_pred HHHHHHHHcCC--HHHHHHHHH
Confidence 89999876655 688888877
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.29 E-value=3.5e-05 Score=67.38 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRG 89 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--~~~~~~~lg 89 (485)
...-.+.+|+.+...|++.+|...|++++. +..+++.....++++.+..+++.+|...++...+.+|. .+.....+|
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 345678899999999999999999999986 45678999999999999999999999999999999886 577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
.++..+|++.+|...|+.++...|+ +.+....+..+.+.++.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 9999999999999999999998886 55566666666666653
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=1.1e-05 Score=67.18 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 011465 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV 122 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 122 (485)
.+.+++|.++-.+|+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999976544 568999999999999999999999999999898 67777777
Q ss_pred HHHHHHHhhhhHHHhhcCCc
Q 011465 123 KECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 123 ~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.++...++ .++|+...-
T Consensus 82 Al~L~~~gr--~~eAl~~~l 99 (120)
T PF12688_consen 82 ALALYNLGR--PKEALEWLL 99 (120)
T ss_pred HHHHHHCCC--HHHHHHHHH
Confidence 877766666 466655443
No 195
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.27 E-value=2.4e-05 Score=81.50 Aligned_cols=128 Identities=18% Similarity=0.107 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
..+++.+|..|...|++++|+++.++||+..|..++.|...|.++...|++++|.+.++.|-.+|+.+.......+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 94 AMGKFKEALKDFQQVKKLSPNDP--------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~--------~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.|+.++|.+.+..-.+.+- ++ ..|+.+.........+++..|+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999876655432 22 24554444333344445666666554
No 196
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.27 E-value=2e-05 Score=82.02 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=103.7
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC----
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEID---- 78 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-----~~~eAl~~~~~al~~~---- 78 (485)
..-.+....+-..|..+.+.|++++|...|...|+.+|++...+..+..+..... +.+.-.+.|++.....
T Consensus 32 ~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 32 KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence 3456677888899999999999999999999999999999999998888872222 2222222222221110
Q ss_pred -----------------------------------------------------------------------------CCC
Q 011465 79 -----------------------------------------------------------------------------PRY 81 (485)
Q Consensus 79 -----------------------------------------------------------------------------p~~ 81 (485)
|..
T Consensus 112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence 001
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 --~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+++.+|+.|...|++++|+++.++|+...|+.++.+...|.++...|+ +.+|...++
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--~~~Aa~~~~ 252 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--LKEAAEAMD 252 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 23568889999999999999999999999999999999999999977776 788888777
No 197
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.24 E-value=3.6e-05 Score=71.46 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=54.0
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++.+++|+||++..+.++++.... ...+.+|.+||++++|+..-++..++-.+.- .+..++.++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~-~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPE-TGADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 589999999999999999886422 2345799999999999766666666655542 235688999999974
No 198
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.20 E-value=4.7e-07 Score=86.05 Aligned_cols=106 Identities=38% Similarity=0.525 Sum_probs=97.8
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
...+++.-....|..++..|+++.|++.|..+|.++|..+..+..+|.+++++++...|+..|..|++++|+....|-..
T Consensus 109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 34455566667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
|.+...+|+|++|..+++.+.+++-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999998643
No 199
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.20 E-value=7.1e-06 Score=72.92 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=46.8
Q ss_pred eeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
+.+++|+|+........+.........+.+++.||+++++..+..+. ++. ....+..|++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~--~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLL--ALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHH--hhcCCccEEEeCCCcceE
Confidence 35789999998766555422122334567999999999987665544 222 223456799999999986
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.20 E-value=6.1e-05 Score=69.78 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~~ 86 (485)
-+..|++.|...++.|+|++|+..|++.....|.. ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 67889999999999999999999999999998764 5677
Q ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhHHHhhcCCcccccccccccccc
Q 011465 87 RRGAAYLAMG--------KFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155 (485)
Q Consensus 87 ~lg~~~~~~g--------~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~ 155 (485)
..|.++...= -..+|+..|+..++.-|++. ++...+..+...+...+..-|.-+.+.+.+..++.....
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 8888876542 23678899999999999884 455566655555666555556666777777777776666
Q ss_pred cccc
Q 011465 156 SIEV 159 (485)
Q Consensus 156 ~l~~ 159 (485)
.++-
T Consensus 193 v~e~ 196 (254)
T COG4105 193 VLEN 196 (254)
T ss_pred HHhc
Confidence 6654
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.20 E-value=7.5e-05 Score=68.72 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-----------EYGSAIQDASKAI 75 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~eAl~~~~~al 75 (485)
.+-..++.+.+|..+++.|++++|+..+++.++..|++ +.+++.+|.+++... ...+|+..++..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999999886 468888999876653 3468999999999
Q ss_pred HhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhh
Q 011465 76 EIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLK 133 (485)
Q Consensus 76 ~~~p~~~~~-----------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~ 133 (485)
...|++..+ -+..|..|.+.|.+..|+..++.+++..|+.+ +++..+..++..++...
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 999997532 35578999999999999999999999999886 46777788887777653
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=3.5e-06 Score=80.36 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------Hh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI--------------EI 77 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al--------------~~ 77 (485)
++.+.-.-+|.+++..|+|++|+..|+-+.+.+.-++..+.+||.|++.+|.|.+|.....+|- ++
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 3344555679999999999999999999998887789999999999999999999987766543 11
Q ss_pred CC------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 78 DP------------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 78 ~p------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+. +..+-...+|.+++..-.|++|++.|.+.+.-+|+....-.+++.|+.++.-
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 11 1123456678888888899999999999999999988888899999977665
No 203
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=2.5e-06 Score=90.83 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
.....|..+|-.|...++..+|+..++.|++.+|++..+|..+|.+|...|.+.-|++.+.+|..++|.+..+.+..+.+
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
...+|+|.+|+..+...+........+...++.++..
T Consensus 640 ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999998877766666677766633
No 204
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.13 E-value=3.7e-06 Score=79.89 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
.-..|..|+++|.|++|+.||.+++..+|-++-.+.+.|.+|.++.+|..|...+..|+.++.....++...+.+...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999888888988888887777
Q ss_pred hhhHHHhhcCCccccccccccccccccccCCCC
Q 011465 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
. ..+|..-++ .+++++|..
T Consensus 180 ~--~~EAKkD~E------------~vL~LEP~~ 198 (536)
T KOG4648|consen 180 N--NMEAKKDCE------------TVLALEPKN 198 (536)
T ss_pred h--HHHHHHhHH------------HHHhhCccc
Confidence 7 466666666 788888873
No 205
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.13 E-value=6.2e-05 Score=77.28 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|+....|...+..+...||..+|...+.+|++.+|++.++|+.--.+.+...+++.|...+.+|-...| ....|+.-+.
T Consensus 581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~ 659 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSAN 659 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhH
Confidence 444556777788888999999999999999999999988888877777778888888888888777655 4567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
....++..++|+..++.+++..|+.+..|..+|+++..+++ .+.|...|.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~--ie~aR~aY~ 709 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN--IEMAREAYL 709 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH--HHHHHHHHH
Confidence 88888888888888888888888888888888888877666 466666666
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.00023 Score=67.28 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc------------------CHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAIQ 69 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g------------------~~~eAl~ 69 (485)
+-...+.+.+|.++++.+++++|+..+++.++.+|++ +.+++.+|.++...+ ...+|+.
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 4555678999999999999999999999999998876 577889998865543 1357889
Q ss_pred HHHHHHHhCCCChHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 011465 70 DASKAIEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAV 129 (485)
Q Consensus 70 ~~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~~~~~~ 129 (485)
.+++.++..|++..+ -+..|..|.+.|.|..|+.-++.+++.-|+. ++++..+..++..+
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 999999999986421 3456788999999999999999999998876 46777888888777
Q ss_pred hhh
Q 011465 130 KKL 132 (485)
Q Consensus 130 ~~~ 132 (485)
|..
T Consensus 226 g~~ 228 (243)
T PRK10866 226 QLN 228 (243)
T ss_pred CCh
Confidence 764
No 207
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.06 E-value=2.7e-05 Score=75.57 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g--~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
...+.....-.++++.++++.|.+.++..-+.+.+........|.+.+..| .+++|...|++.....+.++..+..++
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345666667789999999999999999988888776666666666666666 599999999998877788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
.++..+|+|++|.+.+++++..+|++++++.++..+...+|+.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998888777763
No 208
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.04 E-value=4.9e-05 Score=71.96 Aligned_cols=211 Identities=15% Similarity=0.260 Sum_probs=104.1
Q ss_pred ceeEecccCCCH------HHHHHHHHHcCCCCCCCCeEEcccccCC--C-----CChHHHHHHHHhchhcCCCcEEEecc
Q 011465 223 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR--G-----SFSVEVILTLFAFKCMCPSAIYLSRG 289 (485)
Q Consensus 223 ~~~v~GDihG~~------~dl~~il~~~~~~~~~~~~vflGD~vdr--G-----~~s~e~l~~l~~lk~~~p~~v~~lrG 289 (485)
++++++|+|... ..+.+.++.. ....+.++++||++|. | +...+++.+|..++. .+..|++++|
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~--~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v~~v~G 78 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGE--ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPCYFMHG 78 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhh--hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 478999999542 2344444332 1234679999999985 2 234566666666653 3357999999
Q ss_pred CCCccccccccCchhHHHhhhcHHHHHHHHHHhcccccccee-CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcc
Q 011465 290 NHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368 (485)
Q Consensus 290 NHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~ 368 (485)
|||..... ...+..+- .++.. |....+ +.+++++||-..+.....-...+++-|. | .+
T Consensus 79 NHD~~~~~-------~~~~~~g~-------~~l~~-~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~--~----~~ 137 (241)
T PRK05340 79 NRDFLLGK-------RFAKAAGM-------TLLPD-PSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN--P----WL 137 (241)
T ss_pred CCchhhhH-------HHHHhCCC-------EEeCC-cEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC--H----HH
Confidence 99963311 00000010 11111 222233 4569999998732111111112222221 0 00
Q ss_pred cccccCCCCCC-C----CC------CcCCCCCc-cccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCC
Q 011465 369 CELLWSDPQPL-P----GR------GPSKRGVG-LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAP 436 (485)
Q Consensus 369 ~~llw~dp~~~-~----~~------~~~~rg~~-~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~ 436 (485)
.-++=.-|-.. . .. ....+..- ....++.+.+.++..+.+.+|-||.-.+.=.....++.-++-.+-+
T Consensus 138 ~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lg 217 (241)
T PRK05340 138 QWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLG 217 (241)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeC
Confidence 00000011100 0 00 00111111 2345677889999999999999999654333333333223444444
Q ss_pred CCCCCCCCeEEEEEEecCCCceeEEEE
Q 011465 437 NYCDQMGNKGAFIRFEAPTLKPNIVTF 463 (485)
Q Consensus 437 ~y~~~~~n~~a~~~~~~~~~~~~~~~~ 463 (485)
+.. ..+.++.+.++ .+++..|
T Consensus 218 dw~----~~~~~~~~~~~--~~~~~~~ 238 (241)
T PRK05340 218 DWH----EQGSVLKVDAD--GVELIPF 238 (241)
T ss_pred CCC----CCCeEEEEECC--ceEEEeC
Confidence 442 33788888443 3445554
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=2e-05 Score=76.43 Aligned_cols=98 Identities=26% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------ 80 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~------ 80 (485)
-++.+..-|+.|...+++++|.+.|.++....- .-+.++...+.++.+. ++++|+.++++|+.+--.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 344455555555555555555555555544321 0123344444444333 555555555555543111
Q ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 011465 81 YPKGYYRRGAAYLAM-GKFKEALKDFQQVKKL 111 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~ 111 (485)
-+.++..+|.+|... |++++|+++|++|+.+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 123444455555554 5555555555555543
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.02 E-value=1.5e-05 Score=53.71 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
++..+|.+|..+|++++|++.|+++++.+|+++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555554444
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=2.1e-05 Score=69.57 Aligned_cols=100 Identities=23% Similarity=0.314 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
.-.-|.-++..|+|++|..-|..|+++.|.- ...|.+.|.+...++.++.|+..+.+|+++.|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3446788999999999999999999999874 34678899999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011465 126 EKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 126 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
|..+.. +++|+.-|. +.++.+|...
T Consensus 178 yek~ek--~eealeDyK------------ki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEK--YEEALEDYK------------KILESDPSRR 202 (271)
T ss_pred HHhhhh--HHHHHHHHH------------HHHHhCcchH
Confidence 977744 788888777 7777777543
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.01 E-value=1.3e-05 Score=54.03 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555555555555555555555555555555554
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.96 E-value=8.2e-06 Score=51.51 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=16.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 011465 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (485)
Q Consensus 71 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 102 (485)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 214
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.94 E-value=9.4e-06 Score=51.24 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 011465 36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69 (485)
Q Consensus 36 ~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~ 69 (485)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999963
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=7.1e-05 Score=67.10 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=69.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~ 82 (485)
-.|+.++++..+|..+...|+|+.|.+.|+..++++|...-+..|+|..++..|+++-|.+.+.+--..||+++
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 46888999999999999999999999999999999999999999999999999999999999888888888765
No 216
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.93 E-value=4e-05 Score=72.03 Aligned_cols=201 Identities=12% Similarity=0.155 Sum_probs=97.3
Q ss_pred eEecccCCCH------HHHHHHHHHcCCCCCCCCeEEcccccCCC-----CC--hHHHHHHHHhchhcCCCcEEEeccCC
Q 011465 225 TVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGNH 291 (485)
Q Consensus 225 ~v~GDihG~~------~dl~~il~~~~~~~~~~~~vflGD~vdrG-----~~--s~e~l~~l~~lk~~~p~~v~~lrGNH 291 (485)
++++|+|... ..+.+.+..... ..+.++++||++|.. +. ..++...|-.|+. .+..|+.++|||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~-~~~~v~~v~GNH 78 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSD-QGVPCYFMHGNR 78 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence 5789999543 234444443211 345799999999952 11 1244455555543 356799999999
Q ss_pred CccccccccCchhHHHhhhcHHHHHHH-HHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCC---C-----CC
Q 011465 292 ESKSMNKIYGFEGEVRSKLSETFVELF-AEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRF---C-----EP 362 (485)
Q Consensus 292 E~~~~~~~~~f~~e~~~~~~~~~~~~~-~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~---~-----~~ 362 (485)
|...-. .+.+.. ..++..--..-+-+.+++++||-....+.....-.+++-|. . -|
T Consensus 79 D~~~~~---------------~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~l~ 143 (231)
T TIGR01854 79 DFLIGK---------------RFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLHLP 143 (231)
T ss_pred chhhhH---------------HHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHhCC
Confidence 964210 011000 01111111111225789999997632111111111222111 0 00
Q ss_pred CC-CCcccccccCCCCCCCCCCcCCCC-CccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCC
Q 011465 363 PE-EGLMCELLWSDPQPLPGRGPSKRG-VGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCD 440 (485)
Q Consensus 363 ~~-~~~~~~llw~dp~~~~~~~~~~rg-~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~ 440 (485)
+. ...+...+|+...... ..+. .-....+..+.+.++..+.+++|-||+-...=+.+..++.-.+-++-++..
T Consensus 144 ~~~r~~l~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~- 218 (231)
T TIGR01854 144 LAVRVKLARKIRAESRADK----QMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY- 218 (231)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc-
Confidence 00 1111222332211100 0000 112346778899999999999999999644333333333334556666553
Q ss_pred CCCCeEEEEEE
Q 011465 441 QMGNKGAFIRF 451 (485)
Q Consensus 441 ~~~n~~a~~~~ 451 (485)
..+.++++
T Consensus 219 ---~~~~~~~~ 226 (231)
T TIGR01854 219 ---RQGSILRV 226 (231)
T ss_pred ---cCCeEEEE
Confidence 23666766
No 217
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.93 E-value=0.00013 Score=61.88 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=71.2
Q ss_pred EecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhH
Q 011465 226 VCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGE 305 (485)
Q Consensus 226 v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e 305 (485)
|++|.||..+.+.++... ....+.++++||+. .+++..+..+ .+..++.++||||
T Consensus 2 viSDtH~~~~~~~~~~~~---~~~~d~ii~~GD~~------~~~~~~~~~~---~~~~~~~V~GN~D------------- 56 (129)
T cd07403 2 VISDTESPALYSPEIKVR---LEGVDLILSAGDLP------KEYLEYLVTM---LNVPVYYVHGNHD------------- 56 (129)
T ss_pred eeccccCccccchHHHhh---CCCCCEEEECCCCC------hHHHHHHHHH---cCCCEEEEeCCCc-------------
Confidence 789999997777666654 12345799999974 3445555444 1334888999999
Q ss_pred HHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcC
Q 011465 306 VRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPS 385 (485)
Q Consensus 306 ~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~ 385 (485)
-+++++|+-+ .+ .. . ..+.
T Consensus 57 ---------------------------~~Ilv~H~pp-~~-~~-------------~-----~~~~-------------- 75 (129)
T cd07403 57 ---------------------------VDILLTHAPP-AG-IG-------------D-----GEDF-------------- 75 (129)
T ss_pred ---------------------------cCEEEECCCC-Cc-Cc-------------C-----cccc--------------
Confidence 3799999632 10 00 0 0000
Q ss_pred CCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 386 KRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 386 ~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
..-|.+.+.++++..+.+.++-||.-....+.
T Consensus 76 -----~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 76 -----AHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred -----cccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 11356788899999999999999998766665
No 218
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.92 E-value=0.00089 Score=62.11 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=97.5
Q ss_pred ceeEecccCCCHH----HH----HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhc--CCCcEEEeccCCC
Q 011465 223 HFTVCGDVHGQFY----DL----LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM--CPSAIYLSRGNHE 292 (485)
Q Consensus 223 ~~~v~GDihG~~~----dl----~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~--~p~~v~~lrGNHE 292 (485)
++.+++|+|-..+ .+ ..+.+... ....+.++++||++|.|....+--.+.-.++.+ .+--++.++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~-~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAE-ALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHH-HcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 3788999995322 22 22333221 122456999999999998433222222222222 2445788999999
Q ss_pred ccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccc
Q 011465 293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL 372 (485)
Q Consensus 293 ~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~ll 372 (485)
.. +...+. .+.+-+.-+.+.++.-| -...++++|-=+ .+... .....-
T Consensus 81 ~~-~~ld~~--------~~~~ql~WL~~~L~~~~----~~~~iv~~H~p~-~~~~~------------------~~~~~~ 128 (214)
T cd07399 81 LV-LALEFG--------PRDEVLQWANEVLKKHP----DRPAILTTHAYL-NCDDS------------------RPDSID 128 (214)
T ss_pred ch-hhCCCC--------CCHHHHHHHHHHHHHCC----CCCEEEEecccc-cCCCC------------------cCcccc
Confidence 32 111111 12233333444444322 023578888433 11000 000111
Q ss_pred cCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCcEEEeeccccccCcEEe-----cCCeEEEEecCCCCCCCCCCeE
Q 011465 373 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIE-----HDGKLITVFSAPNYCDQMGNKG 446 (485)
Q Consensus 373 w~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~-~~~~iir~h~~~~~G~~~~-----~~~~~~tvfsa~~y~~~~~n~~ 446 (485)
|++ +..-+...+.+.++++ ++++++-||.-. .+.... .++.|..+.+........+ .|
T Consensus 129 ~~~--------------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g-~~ 192 (214)
T cd07399 129 YDS--------------DVNDGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGG-NG 192 (214)
T ss_pred ccc--------------ccccHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCC-cc
Confidence 110 1123556788889888 899999999753 333333 1344556655443322222 23
Q ss_pred E--EEEEecCCCceeEEEEe
Q 011465 447 A--FIRFEAPTLKPNIVTFA 464 (485)
Q Consensus 447 a--~~~~~~~~~~~~~~~~~ 464 (485)
. ++.|+..+.++.+.+|.
T Consensus 193 ~~r~~~f~~~~~~i~~~tys 212 (214)
T cd07399 193 FLRLLEFDPDNNKIDVRTYS 212 (214)
T ss_pred eEEEEEEecCCCEEEEEeCC
Confidence 3 57774444677777774
No 219
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.91 E-value=0.00021 Score=64.61 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=43.9
Q ss_pred eeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-HHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s-~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
+.+++|+||....+.. .... ....+.+|+.||++++|... .+.+..|. ..+..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~-~~~~D~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILK-AEEADAVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhh-ccCCCEEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHH
Confidence 4688999999988876 2211 12345799999999999763 33332222 22456899999999743
No 220
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.89 E-value=0.00069 Score=60.07 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=100.4
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
.+.+++|.||...+..+..+... ....+.+|.+||++..+... .+.. ....+++.+|||.+.....
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~-~~~~d~vih~GD~~~~~~~~--~l~~------~~~~~i~~V~GN~D~~~~~----- 68 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFN-LEKVDAVIHAGDSTSPFTLD--ALEG------GLAAKLIAVRGNCDGEVDQ----- 68 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhh-hcCCCEEEECCCcCCccchH--Hhhc------ccccceEEEEccCCCcccc-----
Confidence 48899999999975444444322 23455699999999755421 1111 0357899999999875443
Q ss_pred hhHHHhhhcHHHHHHHHHHhccccccce--e-CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCC
Q 011465 303 EGEVRSKLSETFVELFAEVFCCLPLAHV--L-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 379 (485)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~f~~lPl~~~--i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~ 379 (485)
..+|-..+ + +-+++++||.. -.
T Consensus 69 --------------------~~~p~~~~~~~~g~ki~l~HGh~-~~---------------------------------- 93 (172)
T COG0622 69 --------------------EELPEELVLEVGGVKIFLTHGHL-YF---------------------------------- 93 (172)
T ss_pred --------------------ccCChhHeEEECCEEEEEECCCc-cc----------------------------------
Confidence 22333332 2 46999999965 10
Q ss_pred CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEe--cCCCCCCCCCCeEEEEEEecCCCc
Q 011465 380 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVF--SAPNYCDQMGNKGAFIRFEAPTLK 457 (485)
Q Consensus 380 ~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvf--sa~~y~~~~~n~~a~~~~~~~~~~ 457 (485)
.......+..+-+..+.+.+|-||+-. ..++.. ++ ++-|- |.+.+- +++..++++++.++.+
T Consensus 94 -----------~~~~~~~l~~la~~~~~Dvli~GHTH~-p~~~~~-~~-i~~vNPGS~s~pr--~~~~~sy~il~~~~~~ 157 (172)
T COG0622 94 -----------VKTDLSLLEYLAKELGADVLIFGHTHK-PVAEKV-GG-ILLVNPGSVSGPR--GGNPASYAILDVDNLE 157 (172)
T ss_pred -----------cccCHHHHHHHHHhcCCCEEEECCCCc-ccEEEE-CC-EEEEcCCCcCCCC--CCCCcEEEEEEcCCCE
Confidence 012445788889999999999999975 333222 22 32222 445443 3466678888667788
Q ss_pred eeEEEEecc
Q 011465 458 PNIVTFAAV 466 (485)
Q Consensus 458 ~~~~~~~~~ 466 (485)
+....++.-
T Consensus 158 ~~~~~~~~~ 166 (172)
T COG0622 158 VEVLFLERD 166 (172)
T ss_pred EEEEEeecc
Confidence 877777543
No 221
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00013 Score=60.20 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKECE 126 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~l~~~~ 126 (485)
.-.-|.++...|+.+.|++.|.+++.+.|..+.+|.+.++++.-+|+.++|+..+++|+++..+.. .++...+.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445678888999999999999999999999999999999999999999999999999999975442 3566777778
Q ss_pred HHHhhhhHHHhhcCCc
Q 011465 127 KAVKKLKFEEAIAVPE 142 (485)
Q Consensus 127 ~~~~~~~~~~A~~~~~ 142 (485)
...++. +.|..-++
T Consensus 126 Rl~g~d--d~AR~DFe 139 (175)
T KOG4555|consen 126 RLLGND--DAARADFE 139 (175)
T ss_pred HHhCch--HHHHHhHH
Confidence 777763 44444333
No 222
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00017 Score=70.00 Aligned_cols=109 Identities=24% Similarity=0.219 Sum_probs=84.1
Q ss_pred CchhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 9 SSVSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQ--N----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~-g~~~~A~~~y~~al~~~p~--~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
....-+..+..+|..|... |++++|+++|++|+++... . ...+..+|.++.++|+|++|++.|+++....-++
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 3345578888999999998 9999999999999987321 1 4567789999999999999999999988753221
Q ss_pred ------h-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 82 ------P-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 82 ------~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
. ..++..+.|+...|+...|...+++....+|....
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 1 34567788999999999999999999999986543
No 223
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.78 E-value=0.00017 Score=63.14 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=60.3
Q ss_pred CchhHHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHH
Q 011465 9 SSVSRAEELKALANEAFRAK----------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGSA 67 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~eA 67 (485)
.+|.+++.++.=|..++... -+++|+.-|++||.++|+...++.++|.+|...+. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46778888888887776553 35778999999999999999999999999987653 7899
Q ss_pred HHHHHHHHHhCCCChHHHHHH
Q 011465 68 IQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 68 l~~~~~al~~~p~~~~~~~~l 88 (485)
..+|++|+..+|++...+..|
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999986554433
No 224
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.78 E-value=4.4e-05 Score=48.10 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 225
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.76 E-value=0.00063 Score=74.79 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP-RYPKGYYRRGAAY 92 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p-~~~~~~~~lg~~~ 92 (485)
...+..+...|.+.|++++|.+.|++. .+.+...|..+...|.+.|++++|++.|++..+..- -+...+..+..++
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555666677777777777776653 334566677777777777777777777766654321 1445666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+ .++|..+++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf~ 384 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVFD 384 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHHH
Confidence 67777777777666666654 3444555555555544443 566666555
No 226
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=5.2e-05 Score=47.78 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
.+|+++|.++..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 227
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.74 E-value=2.5e-05 Score=76.02 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC-
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID----PR- 80 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~----p~- 80 (485)
.+-.++-++|++|+..|+|++|+..-+.-|++... .-.++.++|.|+.-+|+++.|+++|++++.+. ..
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 34466778999999999999999998887777543 24689999999999999999999999977552 22
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 81 -YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 81 -~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++..+.||..|.-+.++++|+.++++-+.+..+ ...+...++.++..++.. ++|+.+.+
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h--~kAl~fae 339 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH--RKALYFAE 339 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH--HHHHHHHH
Confidence 3567788999999999999999999998887532 234566777777777763 56655544
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.0011 Score=57.38 Aligned_cols=97 Identities=26% Similarity=0.278 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN----------------------AVYYANRAFAHTKLEEYGSAIQDAS 72 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~eAl~~~~ 72 (485)
..+...|......++.+.+++.+.+++.+.... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777788899999999999999874211 2445667888889999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+++..+|-+..+|..+..+|..+|+..+|+..|++..+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654
No 229
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=9.6e-05 Score=46.40 Aligned_cols=32 Identities=34% Similarity=0.781 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
.+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 230
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.67 E-value=0.0018 Score=71.20 Aligned_cols=125 Identities=11% Similarity=-0.010 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAA 91 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-~~~~~~~lg~~ 91 (485)
+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.+++..+.... +...+..+..+
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 344566777777778888888887776543 35567777777777788888888888777654221 45556666777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 92 YLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+...|+.++|.+.|+...+..+-. ...+..+..++...|+ .++|..+++
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~--~~eA~~~~~ 486 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL--LDEAYAMIR 486 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC--HHHHHHHHH
Confidence 777777777777777776543322 2344455555544443 566666554
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.66 E-value=0.00023 Score=68.45 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD----- 117 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----- 117 (485)
..++.+++..+.+..++.+++.+.+-.+.+.... ..+...+|.++..++.+++++++|++|+....++.+
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 3567888888888888888888888877763322 356777899999999999999999999998665443
Q ss_pred -HHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHH
Q 011465 118 -AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYA 196 (485)
Q Consensus 118 -~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~ 196 (485)
+...++..+..+++ +++|+-+.. ++.++...+....+... ...-.+-.+.-.++..+.+- ++
T Consensus 163 qvcv~Lgslf~~l~D--~~Kal~f~~------------kA~~lv~s~~l~d~~~k-yr~~~lyhmaValR~~G~Lg--dA 225 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKD--YEKALFFPC------------KAAELVNSYGLKDWSLK-YRAMSLYHMAVALRLLGRLG--DA 225 (518)
T ss_pred ehhhhHHHHHHHHHh--hhHHhhhhH------------hHHHHHHhcCcCchhHH-HHHHHHHHHHHHHHHhcccc--cH
Confidence 45566777766665 677777666 55554433332222211 00111222333344444443 37
Q ss_pred HHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHH
Q 011465 197 FQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL 243 (485)
Q Consensus 197 ~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~ 243 (485)
.+.|+++.++--...+-..-. ..+.++||||-..-|+.+.|..
T Consensus 226 ~e~C~Ea~klal~~Gdra~~a----rc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQA----RCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHH----HHHHHHHHHHHhcccHhHHHHH
Confidence 788999888766555432111 1478899999998888888765
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.65 E-value=0.00013 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ 46 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~ 46 (485)
.+++.+|.+++..|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34445555555555555555555555555444
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00014 Score=69.76 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 011465 22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 100 (485)
..+....||..|+..++-.+..+.... ....-+|.|++.+|+|++|+..|+.+...+..+++.+.++|.|+..+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456778899999999998887665443 6667789999999999999999999999887789999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh----------------hHHHhhcCCccccccccccccccccccCCCCC
Q 011465 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL----------------KFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------------~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
|...-.+| |++|-....+-.+-..+++. ....|-..|...-+.+|+..|.+++.-+|.+.
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 98776554 55543222221111111110 01112222333345556666668887778877
Q ss_pred Cc
Q 011465 165 GA 166 (485)
Q Consensus 165 ~~ 166 (485)
+.
T Consensus 186 al 187 (557)
T KOG3785|consen 186 AL 187 (557)
T ss_pred hh
Confidence 65
No 234
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00056 Score=69.76 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
..++.--+.+...++|++|++...+.+...|++..+....-.++.+.++|++|+...+.-......+. ..+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 56666677888899999999999999999999999888888888888888888855444332222222 22678888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+++.++|+..++ ..++.+.......+.+...+++ |++|+..|+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~ 134 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQ 134 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 888888888887 4455666566666766655555 677777665
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00043 Score=64.81 Aligned_cols=90 Identities=29% Similarity=0.342 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE 124 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l~~ 124 (485)
.++.|.-+++.|+|.+|...|..-+..-|++ +.++|-||.+++.+|++++|...|..+.+-.|++ |++++.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999985 6789999999999999999999999999988866 678999999
Q ss_pred HHHHHhhhhHHHhhcCCc
Q 011465 125 CEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 125 ~~~~~~~~~~~~A~~~~~ 142 (485)
+...+++ .++|...++
T Consensus 224 ~~~~l~~--~d~A~atl~ 239 (262)
T COG1729 224 SLGRLGN--TDEACATLQ 239 (262)
T ss_pred HHHHhcC--HHHHHHHHH
Confidence 9988887 477777776
No 236
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.60 E-value=0.0014 Score=56.56 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 394 GADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 394 g~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55678999999999999999997654443
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.60 E-value=0.0015 Score=55.41 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 011465 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ 120 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 120 (485)
.+..++..|...++.|+|++|++.++......|-. ..+.+.+|.+|+..+++++|+..+++-+++.|+++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46778899999999999999999999999998864 678999999999999999999999999999998875 466
Q ss_pred HHHHHHHHHh
Q 011465 121 KVKECEKAVK 130 (485)
Q Consensus 121 ~l~~~~~~~~ 130 (485)
..|.++....
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 6666664433
No 238
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.59 E-value=0.00047 Score=66.93 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=82.5
Q ss_pred HHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 011465 20 LANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (485)
Q Consensus 20 lg~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 97 (485)
.|.+.+..| .+++|.-.|++.....+.++.....+|.|++.+|++++|.+.+++|+..+|.++.++.+++.+...+|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 334444555 699999999998887788999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHHhCCCCHHHH
Q 011465 98 F-KEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 98 ~-~eA~~~~~~al~~~p~~~~~~ 119 (485)
. +.+.+++.+.....|+++-..
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHHH
Confidence 9 566678888888899987643
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.58 E-value=0.0018 Score=58.53 Aligned_cols=131 Identities=29% Similarity=0.368 Sum_probs=95.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CChHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~-~~~~~g~~~eAl~~~~~al~~~p---~~~~~~ 85 (485)
.+.....+...+..+...++++.|++.+.+++...+.........+. ++...|++++|...+.+++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34556677778888888888888888888888877776555555555 78888888888888888877766 355666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...+..+...+++++|+..+.+++...+. ....+..++.++...+. +.+|...+.
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~ 226 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK--YEEALEYYE 226 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc--HHHHHHHHH
Confidence 66677777888888888888888888887 57777777777655442 344544444
No 240
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.55 E-value=0.0057 Score=58.58 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 395 ADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 395 ~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
.+.+.+.+++.++++++-||.-......
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~ 222 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGR 222 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceE
Confidence 4567888899999999999998765543
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0011 Score=61.35 Aligned_cols=127 Identities=17% Similarity=0.207 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CChHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIE----IDP--RYPKGYY 86 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~----~~p--~~~~~~~ 86 (485)
....+.+++++.-.|+|.-.+..|.+.++.+ |..+.....+|.+.++.|+.+.|..+++++-+ ++. .+.-+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3456778889999999999999999999998 66788899999999999999999999995443 222 2345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.+.+|.-..++.+|...|.+++..+|.++.+..+.+.|+..+++ ...|+...+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e 310 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE 310 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH
Confidence 788888899999999999999999999999999999999988887 577777777
No 242
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.51 E-value=0.0031 Score=57.71 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=42.6
Q ss_pred ceeEecccCCCHH-----------HHHHHHHHcCCCCCCCCeEEcccccCCCCC---hHHHHHHHHhchhcCCCcEEEec
Q 011465 223 HFTVCGDVHGQFY-----------DLLNIFELNGLPSEENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 223 ~~~v~GDihG~~~-----------dl~~il~~~~~~~~~~~~vflGD~vdrG~~---s~e~l~~l~~lk~~~p~~v~~lr 288 (485)
++.+++|+|-... ...+.++..-.....+.+|++||+++.+.. +.+.+..++......+-.++++.
T Consensus 4 ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 83 (199)
T cd07383 4 KILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATF 83 (199)
T ss_pred EEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4788899995222 122223221112234579999999997765 35555555443333456788999
Q ss_pred cCCC
Q 011465 289 GNHE 292 (485)
Q Consensus 289 GNHE 292 (485)
||||
T Consensus 84 GNHD 87 (199)
T cd07383 84 GNHD 87 (199)
T ss_pred ccCC
Confidence 9999
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00015 Score=66.01 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=78.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 53 ~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
.-|..++....|..|+.+|.+|+.++|..+..|.+.+.||.++.+|+.+....++|++++|+...+++.++.+......
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~- 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG- 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-
Confidence 3466777788899999999999999999999999999999999999999999999999999999999999998855544
Q ss_pred hHHHhhcCCc
Q 011465 133 KFEEAIAVPE 142 (485)
Q Consensus 133 ~~~~A~~~~~ 142 (485)
|.+|+..+.
T Consensus 94 -~~eaI~~Lq 102 (284)
T KOG4642|consen 94 -YDEAIKVLQ 102 (284)
T ss_pred -ccHHHHHHH
Confidence 677777655
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0038 Score=59.08 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH--------------------
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-------------------- 73 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~-------------------- 73 (485)
.+.-+..+......|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344566778889999999999999999999999999999999999999999887554433
Q ss_pred --------------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhh
Q 011465 74 --------------AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 74 --------------al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 131 (485)
.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+- ++..+...+-.+...++.
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 2233677777777777777777777777777766666543 334455555555544443
No 245
>PLN03077 Protein ECB2; Provisional
Probab=97.49 E-value=0.0043 Score=70.01 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--~p~~~~~~~~lg~~~~~~ 95 (485)
..+-..|.+.|+.++|.+.|++. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-.++...
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc
Confidence 34445666666666666666654 345566666666666666666666666665553 232 33344444556666
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 96 GKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|+.++|.+.|+...+..+-. ...+..+..++...|+ .++|..+++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--~~eA~~~~~ 649 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--LTEAYNFIN 649 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 66666666666665332222 2334444444433333 456655554
No 246
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.46 E-value=0.0061 Score=69.30 Aligned_cols=127 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYR 87 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~----~p~~~~~~~~ 87 (485)
+...|..+...|.+.|++++|++.|.+..+.. ..+...|..+..++.+.|++++|.+.+++.... .| +...|..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 45678888888888888888888888876543 224777888888888888888888888887653 34 3567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 88 RGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+..+|.+.|++++|.+.|+++.+.. +.+...+..+...+...++ +++|..+++
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~ 638 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD 638 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 7788888888888888888888765 3456667777777655444 677777766
No 247
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0004 Score=67.87 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN----S--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------R 80 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~----p--~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p------~ 80 (485)
.-.++.++|+++.-.|+++.|+++|++++.+. . ..+..++.||.+|.-..++++|+.+..+-+.+.. .
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678899999999999999999999987653 2 2366788999999999999999999998665532 2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHhh
Q 011465 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PN-DPDAAQKVKECEKAVKK 131 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~ 131 (485)
...+++.||.++..+|..++|+.+.++.++.. |. -..+..++......+|+
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 46789999999999999999999988888763 21 22345555555555554
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0072 Score=55.13 Aligned_cols=103 Identities=24% Similarity=0.220 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~ 83 (485)
..+.++.+..-|+.|-..++|+.|=..|.+|-...- +.+..|..-+.||.+. +.++|+.++++++++..+-..
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH
Confidence 344455566666777777777777777777665421 1244555555555433 777777777777777555332
Q ss_pred ------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Q 011465 84 ------GYYRRGAAYLAM-GKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 84 ------~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p 113 (485)
.+..+|.+|..- .++++|+.+|++|-+...
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 334667777654 777777777777766543
No 249
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00094 Score=62.78 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=105.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE------------- 76 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~------------- 76 (485)
.|..-..+-.+|.+|+...+|..|.++|++.-.+.|.........|+.+++.+.+..|+........
T Consensus 40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445567888999999999999999999999999999988888888888888888888665433221
Q ss_pred -----------------hCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHh
Q 011465 77 -----------------IDP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (485)
Q Consensus 77 -----------------~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A 137 (485)
.-| +.+....+.|-+.++.|++++|++-|+.|++...-++-.-++++.++...++ ++.|
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--yasA 197 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YASA 197 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HHHH
Confidence 123 3456778889999999999999999999999998888888899988866555 6777
Q ss_pred hcCCc
Q 011465 138 IAVPE 142 (485)
Q Consensus 138 ~~~~~ 142 (485)
+.+..
T Consensus 198 Lk~iS 202 (459)
T KOG4340|consen 198 LKHIS 202 (459)
T ss_pred HHHHH
Confidence 76544
No 250
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0017 Score=66.48 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=94.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~------------------- 78 (485)
+..|.++|+.+..++|+..++ -.++.+..+....|++++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 4567777888999999999999999999999886432
Q ss_pred -----------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CC--------HHHHHHHHHHHHHHhh
Q 011465 79 -----------PR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----P--ND--------PDAAQKVKECEKAVKK 131 (485)
Q Consensus 79 -----------p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p--~~--------~~~~~~l~~~~~~~~~ 131 (485)
|+ .-+.+|+.|.++...|+|.+|++.+++|+++. . .+ ......++.+++.+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 34568899999999999999999999995542 1 11 1245567777777776
Q ss_pred hhHHHhhcCCc
Q 011465 132 LKFEEAIAVPE 142 (485)
Q Consensus 132 ~~~~~A~~~~~ 142 (485)
.++|...|.
T Consensus 240 --t~ea~~iy~ 248 (652)
T KOG2376|consen 240 --TAEASSIYV 248 (652)
T ss_pred --hHHHHHHHH
Confidence 477777655
No 251
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.36 E-value=0.0042 Score=70.61 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGA 90 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-p~~~~~~~~lg~ 90 (485)
.|..+...+.+.|++++|.+.+.+..+. .| +...|..+..+|.+.|++++|.+.|+++.+.+ +.+...|..+..
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 4444444444555555555554444331 22 23344444444444444444444444444443 223344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 011465 91 AYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~ 110 (485)
.|.+.|++++|.+.|++..+
T Consensus 623 ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 252
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.33 E-value=0.0032 Score=61.65 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
++......+.-+...|++++|.+..+++++..-+.. .+..++. ...++.+.=++..++.++..|+++..+..||..+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 456667788899999999999999999999765533 3333333 3578899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...+.|.+|..+|+.|++..|+. ..+..++.++.+++.. .+|.+..+
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~--~~A~~~r~ 385 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEP--EEAEQVRR 385 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCCh--HHHHHHHH
Confidence 99999999999999999988764 4577888888777763 44444433
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.29 E-value=0.0073 Score=54.47 Aligned_cols=105 Identities=24% Similarity=0.418 Sum_probs=93.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Q 011465 23 EAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 23 ~~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 98 (485)
.+...++++.|+..|.+++..+| ........++..+...+++++|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 89999999999999999999777 46677777888888999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011465 99 KEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (485)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (485)
++|+..+.+++...|.....+...+..+.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 99999999999999986666666666664
No 254
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0026 Score=58.95 Aligned_cols=119 Identities=16% Similarity=0.244 Sum_probs=97.9
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
..++.++.....+|...++.||.+.|..+++++-+.+ ...-....+.+.+|...+++.+|...+.+.+..||.+
T Consensus 206 ~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence 3456778888999999999999999999999655432 2234556677888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECE 126 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~ 126 (485)
+.+-.+.|.|+..+|+..+|++..+.+++..|... ...+++...+
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999998643 3344444433
No 255
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.28 E-value=0.00067 Score=65.39 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCceeEecccCCC----HHHHHHHHHHcCCCCCCCCeEEcccccCCC--CChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 221 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 221 ~~~~~v~GDihG~----~~dl~~il~~~~~~~~~~~~vflGD~vdrG--~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
+-++..++|+|.. ...+.++++...- ...+.+++.||++|.+ ...-++...|-.|+... .|+.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~-~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIE-QKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHh-cCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 3469999999976 4456666665332 2345799999999954 22334555555565433 499999999964
No 256
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.00097 Score=67.17 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=97.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCChHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~---g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
+-|+.++.....|+..+.......|+..|.+++...|.....+.++|.++++. |+.-.|+.....|++++|....+|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 45778888899999999999999999999999999999999999999998875 577789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
+.|+.++..++++.+|+.+...+....|.+..
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 99999999999999999988766666675543
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.001 Score=66.46 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----- 77 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~----- 77 (485)
+.+.+++.+++.+|..|++.+|.+.+... +...|. ...+|.++|.+++++|.|.-+..+|.+|++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999887653 222232 3456889999999999999999999999961
Q ss_pred ----CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 78 ----DP---------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 78 ----~p---------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.| ...+..|+.|..|...|+.-.|.++|.++......+|..|..+++|.....+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 11 2357889999999999999999999999999999999999999999855443
No 258
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.25 E-value=0.0048 Score=54.35 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=96.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHcCCH
Q 011465 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~ 98 (485)
++....++=|.+.++....+.++..|. ..-.+.||..+..+|++.||...|++++. +..+++..+..++.+....+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 344555566788888888888888886 45577899999999999999999999985 4567888999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 99 KEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 99 ~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|...+++..+..|. .|+....++.++...++ ++.|...++
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~--~a~Aesafe 184 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK--YADAESAFE 184 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC--chhHHHHHH
Confidence 9999999999999885 46777788888877666 344444444
No 259
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.23 E-value=0.00092 Score=59.74 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=28.6
Q ss_pred CCCeEEcccccCCCCChH--HHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 250 ENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
.+.+|++||++|...... +....-+......+..|++++||||..
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 457999999998755332 222211122223456899999999974
No 260
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.21 E-value=0.047 Score=53.67 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRG 89 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-~~~~~~~lg 89 (485)
...+......|..-+..|+|.+|.....++-+..+....++..-+.+.-++|+++.|-.++.++-+..++ .......++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3456667778888899999999999999998888888888888899999999999999999999998554 455677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+...|+++.|.....++++..|.++.+......+|...|. +.....+..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~l~ 211 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAILP 211 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 999999999999999999999999999999999999977776 455544443
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0032 Score=59.34 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=79.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 011465 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (485)
Q Consensus 24 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 103 (485)
+.+..+|+.|+++...-.+.+|.+......+|.||+...+|..|.++|++.-.+.|...+..+..++.+++.+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 011465 104 DFQQV 108 (485)
Q Consensus 104 ~~~~a 108 (485)
.....
T Consensus 100 V~~~~ 104 (459)
T KOG4340|consen 100 VAFLL 104 (459)
T ss_pred HHHHh
Confidence 76544
No 262
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.19 E-value=0.005 Score=65.91 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=85.3
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 011465 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (485)
Q Consensus 24 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 103 (485)
....+++.+|++...+.++..|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45667888999999999999999988888889999999999999977777666677777888888899999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 104 DFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
.|++++...|+ .+....+-.++..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 99999999988 6655555555533
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0028 Score=61.33 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~-~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
+|..+.+...+.+..+.|...|.+|++..+....+|...|..-+. .++.+.|...|+++++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999997666678899999998666 5667779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHh
Q 011465 95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVK 130 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~ 130 (485)
.++.+.|...|++++..-|... ..|..........|
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999999877665 34544444443444
No 264
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=97.17 E-value=0.0035 Score=65.02 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHCCCc----EEEeeccccc--cCcE-EecCCeEEEE---ecCCCCCCCCCCeEEEEEEecCCCceeEEE
Q 011465 394 GADVTKRFLQDNSLD----LVVRSHEVKD--EGYE-IEHDGKLITV---FSAPNYCDQMGNKGAFIRFEAPTLKPNIVT 462 (485)
Q Consensus 394 g~~~~~~fl~~~~~~----~iir~h~~~~--~G~~-~~~~~~~~tv---fsa~~y~~~~~n~~a~~~~~~~~~~~~~~~ 462 (485)
.++..++.|+..|++ .||-||.||. +|=. ...+||++.| ||.. |... ..-|++-+| .++.-+.+++
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~-TGIAGYTLi-yNS~gl~L~~ 582 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKT-TGIAGYTLI-YNSYGLQLVA 582 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccc-cCccceEEE-ecCCcceecc
Confidence 478899999999999 9999999986 5654 3468999999 4655 6543 444566555 3444444433
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0015 Score=59.81 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~eA~~~~~~al 109 (485)
..+....|+-+++.|+|++|...|..|+.. .|. ....+.+.++|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999843 333 34568899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011465 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 110 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
...|.+..+++..+.+....-+ .++|.+-+. ++++++|....
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn--~~eA~~D~~------------~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWN--EAEAKADLQ------------KVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcC--HHHHHHHHH------------HHHhcChhhHH
Confidence 9999999999999988744333 455544444 77877775443
No 266
>PRK10941 hypothetical protein; Provisional
Probab=97.14 E-value=0.0059 Score=58.30 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
....++=.+|.+.++++.|+.+.+..+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999999999999866555443
No 267
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.13 E-value=0.001 Score=61.96 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=47.7
Q ss_pred ceeEecccCCCHH----HHHHHHHHcCCCCCCCCeEEcccccCCCCChH-HHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 223 HFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~~~----dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~-e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++.+++|+|.... .+.++++.... ...+.+++.||++|.+.... ++..++-.+ ..+..++.+.||||...
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~-~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l--~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINA-LKPDLVVLTGDLVDGSVDVLELLLELLKKL--KAPLGVYAVLGNHDYYS 77 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhc-cCCCEEEEcCcccCCcchhhHHHHHHHhcc--CCCCCEEEECCCccccc
Confidence 5889999998643 45555554332 23456899999999988765 444444333 24567899999999853
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.13 E-value=0.00089 Score=41.92 Aligned_cols=30 Identities=37% Similarity=0.788 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
+|+.+|.+|..+|++++|.++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 269
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.08 E-value=0.023 Score=46.21 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=74.4
Q ss_pred HHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---
Q 011465 14 AEELKA--LANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIE--- 76 (485)
Q Consensus 14 a~~~~~--lg~~~~~~g~~~~A~~~y~~al~~~p~------------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~--- 76 (485)
+.+|.. .|.-.+..|-|++|.+.+.+|...... ++.++-.|+.++..+|+|++++...++++.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 344444 455667788999999999999987532 356677899999999999999998888885
Q ss_pred ----hCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 77 ----IDPRYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 77 ----~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
++.+.. .+-++.|.++..+|+.++|+..|+++-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455544 35577899999999999999999988753
No 270
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.0092 Score=59.69 Aligned_cols=132 Identities=15% Similarity=0.098 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.-.-+..|...|....++.+...|.+.+-.||...|.+- .+-..-..-.++++++.....|++-++-.|++..+|...|
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 344567778888888888888999999999998888753 3344445566788899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..-..+|+.+.|...|.-|+....-+..-....+.+-.....+.+++|..+|+
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 99999999999999998888765444444555666666666777888888777
No 271
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.07 E-value=0.00055 Score=63.56 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHCCCcEEEeeccccc
Q 011465 393 FGADVTKRFLQDNSLDLVVRSHEVKD 418 (485)
Q Consensus 393 fg~~~~~~fl~~~~~~~iir~h~~~~ 418 (485)
..+..+.+.++..+++.+|-||.-..
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~ 201 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRP 201 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 44666778889999999999999654
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.07 E-value=0.0045 Score=62.52 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=92.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------
Q 011465 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------------------- 79 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p------------------- 79 (485)
.+-....+..+.++-++.-.+||+++|+.+.+|..||.-. .....+|.+.+++|++...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4455667889999999999999999999999999988632 3345677777777775410
Q ss_pred ----C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 80 ----R--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 80 ----~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
. ...+..++|.|..++|+.+||++.++..++..|. +..++.++..++..++. +.++..+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL~ 319 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALLA 319 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 0 1345677999999999999999999999998875 45678888888855555 677766655
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.06 E-value=0.0012 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p 79 (485)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455555555555555555555555444
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.0087 Score=53.23 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKGYYRRG 89 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-~~~~~~lg 89 (485)
.-+...+|..+...+++++|+..++.++....+. +.+-.+||.+..++|++++|+..++.... +.. +..-...|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 3456678889999999999999999988643332 45677899999999999999988876432 222 23345679
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
.++...|+-++|...|+++++..++.+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999999875443
No 275
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.03 E-value=0.0062 Score=54.29 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCCCeEEcccccCCCCChH--HHHHHHHhchh----c----CCCcEEEeccCCCccc
Q 011465 249 EENPYLFNGDFVDRGSFSV--EVILTLFAFKC----M----CPSAIYLSRGNHESKS 295 (485)
Q Consensus 249 ~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~----~----~p~~v~~lrGNHE~~~ 295 (485)
..+.+|++||++|.|.... +....+..++. . .+..+++++||||...
T Consensus 45 ~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 45 KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 3457999999999987532 22222222211 1 1457999999999864
No 276
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.02 E-value=0.0018 Score=57.60 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccc
Q 011465 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (485)
Q Consensus 249 ~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (485)
..+.++++||++++|..+.. +..+..+ +..+++++||||....
T Consensus 42 ~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 42 PDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred CCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 34679999999999986644 3333332 4569999999997544
No 277
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.01 E-value=0.019 Score=60.19 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=33.2
Q ss_pred CcEEEeeccccccCcEEecCCeEEEEecCCCCCCC---------CCCeEEEEEEecCCCceeEEEEe
Q 011465 407 LDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ---------MGNKGAFIRFEAPTLKPNIVTFA 464 (485)
Q Consensus 407 ~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~---------~~n~~a~~~~~~~~~~~~~~~~~ 464 (485)
-+.++-||+.. .|+....+ +.+.+.+.+... ....|.+.+|.=++++.+.+.|.
T Consensus 441 Pdv~~~GH~H~-~~~~~~~g---~~~IN~gsf~~~t~fq~~~~~~p~~~~~~lv~l~tl~~~~~~f~ 503 (504)
T PRK04036 441 PDIFHTGHVHI-NGYGKYRG---VLLINSGTWQAQTEFQKRVNIVPTPARVPIVDLDTLEVTVLDFD 503 (504)
T ss_pred CCEEEeCCCCc-cceEEECC---EEEEECCcccccccccceeccCCCCCEEEEEECCCCcEEEEEec
Confidence 37899999964 56654433 334455555421 12457777775477888877774
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.97 E-value=0.0034 Score=60.69 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~------- 81 (485)
.+...+|+.+...+.++++++.|++|++...++ ..++..||..+.++.++++|+-+..+|.++-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 456678999999999999999999999985433 3568899999999999999999999999874321
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+.+.++.++..+|+.-+|.++++.|.++. ..|. ....-++.+|...+. .+.|+.-|+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd--~e~af~rYe 270 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD--LERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc--HhHHHHHHH
Confidence 3467889999999999999999999998864 2332 234456666755554 566666665
No 279
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.95 E-value=0.0041 Score=63.50 Aligned_cols=100 Identities=24% Similarity=0.251 Sum_probs=90.1
Q ss_pred HccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 011465 26 RAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKD 104 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~~p~~~-~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 104 (485)
.+|+...|++++..|+...|... ....+||+++.+.|-...|-..+.+++.++...+..++.+|.+|..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 56899999999999999998754 45789999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 011465 105 FQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 105 ~~~al~~~p~~~~~~~~l~~~ 125 (485)
|++|+.++|+++.....+..+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 999999999999876655443
No 280
>PLN03077 Protein ECB2; Provisional
Probab=96.91 E-value=0.023 Score=64.19 Aligned_cols=120 Identities=11% Similarity=0.003 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH-------
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY------- 86 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~------- 86 (485)
...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|+.++|+..|++.+..-+.+...+.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 4567778888888999999998888753 345677888888888888888888888887753222222222
Q ss_pred ----------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhh
Q 011465 87 ----------------------------RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138 (485)
Q Consensus 87 ----------------------------~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~ 138 (485)
.+-..|.+.|+.++|...|+.. +.+...|..+...+...|+ .++|+
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--~~~A~ 574 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--GSMAV 574 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--HHHHH
Confidence 2336677777888887777765 4566677777777755555 57777
Q ss_pred cCCc
Q 011465 139 AVPE 142 (485)
Q Consensus 139 ~~~~ 142 (485)
.+++
T Consensus 575 ~lf~ 578 (857)
T PLN03077 575 ELFN 578 (857)
T ss_pred HHHH
Confidence 7776
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.89 E-value=0.0071 Score=42.20 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011465 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
+.++.+|..++++|+|++|..+.+.+++.+|+|..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 45678888889999999999999999999999888877666655443
No 282
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.89 E-value=0.0021 Score=60.79 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred eeEecccCCCH------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011465 224 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 224 ~~v~GDihG~~------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
+.++.|+|+.. ..+.++++..... ..+.+|+.||++++++.+.+.+..+..+ .+..|++++||||..
T Consensus 2 i~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 2 IAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred EEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 67889999653 1234455443222 3567999999999876666666555443 346799999999974
No 283
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.025 Score=52.75 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=79.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 011465 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 97 (485)
+++.+..+.+-|....++..+++. ......||.++.. .+++.+|.-.|+..-+..|..+......+.|+..+|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 344444444444444444444333 3344445555543 3468899999999888777788889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 98 FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 98 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
|++|...++.|+..++++++++.++-.+-...|.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999988877766665
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0079 Score=57.61 Aligned_cols=95 Identities=24% Similarity=0.323 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
+.-+-.-|+-|++.++|..|+..|.++|+.... ++..|.+.|.|...+|+|..|+..+.+|+.++|++..++..-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445666799999999999999999999998554 3567889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhhcCCccc
Q 011465 124 ECEKAVKKLKFEEAIAVPESE 144 (485)
Q Consensus 124 ~~~~~~~~~~~~~A~~~~~~~ 144 (485)
.|+..+.+ +.+|....+.+
T Consensus 161 kc~~eLe~--~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELER--FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHH--HHHHHHHHhhh
Confidence 99977776 77777776643
No 285
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.81 E-value=0.0053 Score=58.09 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
...++..-...|....+.|+.++|..+|+.|++++|+++.+....|......++.-+|-.+|-+|+.++|.+.+++.+.+
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 44555666667777888899999999999999999999999999998888888888999999999999999988887765
Q ss_pred H
Q 011465 90 A 90 (485)
Q Consensus 90 ~ 90 (485)
.
T Consensus 192 R 192 (472)
T KOG3824|consen 192 R 192 (472)
T ss_pred c
Confidence 3
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.033 Score=50.91 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC----
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPR---- 80 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~-g~~~eAl~~~~~al~~~p~---- 80 (485)
+++..-|-.+.-.++..+.++|+.++++++++..+- +..+..+|.+|..- .++++|+.+|++|-+....
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 344444555555566779999999999999997654 34455889988765 8999999999999876433
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccc
Q 011465 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIE 158 (485)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~ 158 (485)
-..++...+..-..+++|.+|+..|++..+..-+++-..+....-.. ..++-.+-....-.+.....+-..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl-------kAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL-------KAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH-------HHHHHhHhcccHHHHHHHHHHHHh
Confidence 23456666777778999999999999999887777765544443332 222222222233344445556667
Q ss_pred cCCCCCCccc
Q 011465 159 VEPQYSGARI 168 (485)
Q Consensus 159 ~~~~~~~~~l 168 (485)
++|.+...+-
T Consensus 224 ~dP~F~dsRE 233 (288)
T KOG1586|consen 224 LDPAFTDSRE 233 (288)
T ss_pred cCCcccccHH
Confidence 7888887643
No 287
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.013 Score=50.63 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
..++..++..+...|++++|+..+++++..+|.+..++..+-.+|...|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999999999987653
No 288
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.72 E-value=0.0026 Score=60.68 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=43.9
Q ss_pred eeEecccCCCHHHHHHHHHHcCC--CCCCCCeEEcccccCCCC-ChHHHHH------HHH------hchhcCCCcEEEec
Q 011465 224 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGS-FSVEVIL------TLF------AFKCMCPSAIYLSR 288 (485)
Q Consensus 224 ~~v~GDihG~~~dl~~il~~~~~--~~~~~~~vflGD~vdrG~-~s~e~l~------~l~------~lk~~~p~~v~~lr 288 (485)
++|+||+||+++.+...++.... ....+.+|..||+-..+. ...+.+. -+. .=....|--++++.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 47899999999988774443211 123457999999965443 3333332 111 11233577788999
Q ss_pred cCCCcc
Q 011465 289 GNHESK 294 (485)
Q Consensus 289 GNHE~~ 294 (485)
||||..
T Consensus 81 GNHE~~ 86 (262)
T cd00844 81 GNHEAS 86 (262)
T ss_pred CCCCCH
Confidence 999964
No 289
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.029 Score=56.24 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
+...|...|.--..+++++.|...+++||..+..+...|...+.+-++......|...+++|+.+-|.-.+.|+..-.+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34567777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+|+..-|...|++.+...|+.. +|... +...+...+.+.|...|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-aW~sf--I~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-AWLSF--IKFELRYKEIERARSIYE 198 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-HHHHH--HHHHHHhhHHHHHHHHHH
Confidence 999999999999999999998643 33322 333344444566666666
No 290
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.68 E-value=0.0046 Score=59.45 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=44.9
Q ss_pred ceeEecccC-CC------------HHHHHHHHHHcCCCCCCCCeEEcccccCCCCC-hHHHHHHHHhchhcCCCcEEEec
Q 011465 223 HFTVCGDVH-GQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 223 ~~~v~GDih-G~------------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~-s~e~l~~l~~lk~~~p~~v~~lr 288 (485)
++.+++|+| +. ...+.++++..... ..+.+|++||+++.|.. +.+-+..+...-...+-.++.+.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~-~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE-SLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC-CCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 478899999 21 34455555544322 24579999999998873 22333333322222335689999
Q ss_pred cCCCccccc
Q 011465 289 GNHESKSMN 297 (485)
Q Consensus 289 GNHE~~~~~ 297 (485)
||||.....
T Consensus 81 GNHD~~~~~ 89 (267)
T cd07396 81 GNHDLYNPS 89 (267)
T ss_pred Ccccccccc
Confidence 999986543
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.02 Score=45.03 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHH
Q 011465 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 33 A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
.++.++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.-+.....|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566777888888888888888888888888888888888888887765 4555555555555555444444443
No 292
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.63 E-value=0.06 Score=60.59 Aligned_cols=127 Identities=12% Similarity=-0.047 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
.-..|..+-|....-|.-+.-.+.|++|-+.+. ....|..|..+|...+++++|.+.+++.++...+....|..+|..+
T Consensus 1496 KLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1496 KLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344454444544445555555666666655432 3556666777777777777777777777776666667777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 93 LAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++.+-++|...+++|++.-|. +.+.....+++..+.|. .+.+..+++
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD--aeRGRtlfE 1624 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD--AERGRTLFE 1624 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC--chhhHHHHH
Confidence 7777777777777777777776 45555555555544444 344444444
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.62 E-value=0.023 Score=45.89 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=66.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCChHHH
Q 011465 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~eAl~~~~~al~~~p~~~~~~ 85 (485)
+|..++..|++-+|++..+..+...+++. ..+..-|.++.++.. .-.|++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988776 444455666654332 3356777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77776666666666776666666654
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.034 Score=63.16 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--------Y 81 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--------~ 81 (485)
++..+|..+...|++++|...+++++...... ..++.++|.++...|++++|...+++++..... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 34445555555555555555555555432210 123444555555555555555555555543111 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
...+..+|.++...|++++|...+++++..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 122334455555556666665555555554
No 295
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.57 E-value=0.042 Score=53.19 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHHHH
Q 011465 13 RAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRR 88 (485)
Q Consensus 13 ~a~~~~~lg~~~~~-~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~~~l 88 (485)
....|...|..-+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-|... ..|...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45677888888666 67777799999999999999999999999999999999999999999998866644 578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
...-...|+.+...+..+++.+..|++...
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 888889999999999999999999985543
No 296
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.54 E-value=0.034 Score=59.80 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=92.3
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..|+...+....|..+.++|+.++|..+++..-...+++......+-.||..++++++|..+|++++..+|+ .+..+.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 457777888889999999999999998888777777888899999999999999999999999999999999 8888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
-.+|.+.+.|.+=.+.--+..+..|+++.
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999887655554445556777764
No 297
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.51 E-value=0.031 Score=63.46 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~------ 81 (485)
.......+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34555667889999999999999999999865543 2456788999999999999999999999764321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.++...|++++|...+++++...... ...+..++.++...| ++++|.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~ 597 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA--RLDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 3456778999999999999999999999863221 122334555554444 3677766655
No 298
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.51 E-value=0.042 Score=53.27 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=48.7
Q ss_pred ceeEecccCCC------HHHHHHHHHHcCCCCCCCCeEEcccccCCCC-ChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 223 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGS-FSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~-~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++..+.|+|-. ...+..+++..... ..+.+|+.||+.+.|. .+.+-+.-++. +...|..+++++||||.+.
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~-~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQL-KPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDARV 79 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcC-CCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcCCc
Confidence 36788898866 23344455555533 2367999999999974 23333322333 3466888999999999877
Q ss_pred ccc
Q 011465 296 MNK 298 (485)
Q Consensus 296 ~~~ 298 (485)
.+.
T Consensus 80 ~~~ 82 (301)
T COG1409 80 VNG 82 (301)
T ss_pred hHH
Confidence 663
No 299
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.024 Score=54.51 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=98.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHH
Q 011465 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAYLA 94 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-~p~~---~~~~~~lg~~~~~ 94 (485)
..+...+..|++-+|....++.|+..|.+..++..--.+++.+|+...-...+++.+.. +|+. ....-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677888999999999999999999999888888899999999999999998877 6665 4444557788889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.|-|++|.+.-+++++++|.+.-+.-..+-++...++ +.++.+...
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM~ 233 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFMY 233 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHHH
Confidence 9999999999999999999988777777777755555 566766654
No 300
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.51 E-value=0.073 Score=44.48 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011465 47 NAVYYANRAFAHTKLEE---YGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~---~~eAl~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
.....+++|.++....+ ..+.+..++..++ -+|+ ..+..+.|+..++++++|++|+.+.+..++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46678889999887654 6688899999886 4554 46678889999999999999999999999999999998877
Q ss_pred HHHHHHHHhh
Q 011465 122 VKECEKAVKK 131 (485)
Q Consensus 122 l~~~~~~~~~ 131 (485)
...+..++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 7666655443
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.50 E-value=0.0052 Score=37.90 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 302
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.48 E-value=0.028 Score=58.56 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=84.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHH
Q 011465 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEAL 102 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~ 102 (485)
..+.+.|.+.++...+..|+.+...+..|..+...|+.++|++.+++++...... .-.++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999998644332 346889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH-HHHHHHHHHhh
Q 011465 103 KDFQQVKKLSPNDPDAAQ-KVKECEKAVKK 131 (485)
Q Consensus 103 ~~~~~al~~~p~~~~~~~-~l~~~~~~~~~ 131 (485)
.+|.+..+.+.-....+. ..|.|+..+++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 999999986654444443 33445544443
No 303
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.48 E-value=0.15 Score=48.70 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=80.4
Q ss_pred CCCeEEcccccCCCCChHH------HHHHHHhchhcC-CCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHh
Q 011465 250 ENPYLFNGDFVDRGSFSVE------VILTLFAFKCMC-PSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e------~l~~l~~lk~~~-p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f 322 (485)
.+.+||+||++|+|..... .=.+.-.+.... ..-++.+.||||. ||... .....+..|.+.|
T Consensus 46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi-------g~~~~----~~~~~~~rf~~~F 114 (257)
T cd08163 46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI-------GFGNG----VVLPVRQRFEKYF 114 (257)
T ss_pred CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc-------CCCCC----CCHHHHHHHHHHh
Confidence 4579999999999986421 111111111100 1357889999996 22211 1123466777778
Q ss_pred ccccccceeCCcEEEEeCccccCC------CC--ChhhhhhccCCCCCCCCC-c-cc-ccccCCCCCC-----CCCCcCC
Q 011465 323 CCLPLAHVLNQKVFVVHGGLFSVD------GV--KLSDIKTIDRFCEPPEEG-L-MC-ELLWSDPQPL-----PGRGPSK 386 (485)
Q Consensus 323 ~~lPl~~~i~~~~~~vHgGi~~~~------~~--~~~~i~~~~r~~~~~~~~-~-~~-~llw~dp~~~-----~~~~~~~ 386 (485)
........+++-.|++=-++ +.. .. +.+-+.+... ..++... + +. -=++..|... +.+.+.+
T Consensus 115 g~~~~~~~~~~~~fV~Lds~-~l~~~~~~~~~~~~~~~l~~~l~-~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~ 192 (257)
T cd08163 115 GPTSRVIDVGNHTFVILDTI-SLSNKDDPDVYQPPREFLHSFSA-MKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLP 192 (257)
T ss_pred CCCceEEEECCEEEEEEccc-cccCCcccccchhHHHHHHhhhh-ccCCCCcEEEEeccccccCCCCCCCCccccCCCCC
Confidence 65444455555444433333 110 00 1111111100 0111111 1 11 1133333211 1123344
Q ss_pred CCCcc----ccCHHHHHHHHHHCCCcEEEeeccccccCcEEec
Q 011465 387 RGVGL----SFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH 425 (485)
Q Consensus 387 rg~~~----~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~ 425 (485)
.+.|+ .-+++..+..|+..+-.+|.-||+- ++-+..|
T Consensus 193 ~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~h 233 (257)
T cd08163 193 YGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH--DYCEVVH 233 (257)
T ss_pred CCCCccceeecCHHHHHHHHHhhCCcEEEecCCC--ccceeEc
Confidence 44443 3578999999999999999999994 4444444
No 304
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.45 E-value=0.05 Score=53.84 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=78.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ--------N----------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~--------~----------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p 79 (485)
..-|..++++++|..|.--|..||++..+ . ..+...+..||+++++.+-|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 44567889999999999999999987422 1 23456789999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011465 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 109 (485)
....-+...|.+...+.+|.+|...+--|.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776554
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.45 E-value=0.006 Score=37.60 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ 46 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~ 46 (485)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555444
No 306
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.42 E-value=0.0074 Score=57.46 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=44.2
Q ss_pred ceeEecccCC-C-----------HHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHH----HHHhchhcCCCcEEE
Q 011465 223 HFTVCGDVHG-Q-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIYL 286 (485)
Q Consensus 223 ~~~v~GDihG-~-----------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~----~l~~lk~~~p~~v~~ 286 (485)
+++.++|+|- . ...|.++++.+. ....+.+++.||++|+..-+.+... ++..|+-..|-.|++
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~-~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAK-AEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHH-HcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3778889993 2 123334443322 1235679999999999866655433 333343333467999
Q ss_pred eccCCCccc
Q 011465 287 SRGNHESKS 295 (485)
Q Consensus 287 lrGNHE~~~ 295 (485)
+.||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999753
No 307
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.41 E-value=0.024 Score=58.95 Aligned_cols=103 Identities=22% Similarity=0.188 Sum_probs=84.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKG 84 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-~~~ 84 (485)
.|+-+-.++..|+.+..+|+.++|++.|++++..... ....++.+|.++..+.+|++|..++.+.++.+.-. +..
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 4677778889999999999999999999999853322 34568899999999999999999999999876543 344
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 011465 85 YYRRGAAYLAMGKF-------KEALKDFQQVKKLS 112 (485)
Q Consensus 85 ~~~lg~~~~~~g~~-------~eA~~~~~~al~~~ 112 (485)
.+..|.|+..+++. ++|.+.|+++-.+.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 55678999999999 78888887776553
No 308
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.37 E-value=0.007 Score=38.54 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
++.++|.+|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996654
No 309
>PRK10941 hypothetical protein; Provisional
Probab=96.36 E-value=0.052 Score=51.89 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
...+.++=..|.+.++++.|+.+.+..+.++|+++.-+-.+|.+|.++|.+..|...++.-++..|+++.+-.-...+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 355667778899999999999999999999999999999999999999999999999999999999998876654433
No 310
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.12 Score=48.45 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 12 SRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
++-..+.++|..+.+ .+++++|.-+|++.-+..|..+......|.|.+.++++++|...++.|+..+++++.++.+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 344556667766653 3468999999999888788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 011465 88 RGAAYLAMGKFKEALKD-FQQVKKLSPNDPDA 118 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~-~~~al~~~p~~~~~ 118 (485)
+-.+-..+|.-.++.+- ..+.....|+.+-.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999998887764 45555566766543
No 311
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.31 E-value=0.012 Score=55.51 Aligned_cols=67 Identities=30% Similarity=0.406 Sum_probs=41.7
Q ss_pred eeEecccCCC------------HHHHHHHHHHcC-CCCCCCCeEEcccccCCCCC-hHHHH-HHHHhchhcCCCcEEEec
Q 011465 224 FTVCGDVHGQ------------FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSF-SVEVI-LTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 224 ~~v~GDihG~------------~~dl~~il~~~~-~~~~~~~~vflGD~vdrG~~-s~e~l-~~l~~lk~~~p~~v~~lr 288 (485)
+.+++|+|=. ...+.++++... ..+..+.+|++||+++.|.. ..+-+ ..+-. .+..++.++
T Consensus 2 ~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~----~~~p~~~v~ 77 (240)
T cd07402 2 LAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAA----LPIPVYLLP 77 (240)
T ss_pred EEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhh----cCCCEEEeC
Confidence 6788899933 234555655432 22345679999999998753 22222 22222 255689999
Q ss_pred cCCCcc
Q 011465 289 GNHESK 294 (485)
Q Consensus 289 GNHE~~ 294 (485)
||||..
T Consensus 78 GNHD~~ 83 (240)
T cd07402 78 GNHDDR 83 (240)
T ss_pred CCCCCH
Confidence 999974
No 312
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.28 E-value=0.31 Score=45.59 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCC
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKL--------EEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~--------g~~~eAl~~~~~al~~~p~ 80 (485)
-..++...++..+++.+++++|+...++-+++.|.+ ..+++..|.+++.. ....+|...++..+..-|+
T Consensus 69 ~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 69 YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 345778899999999999999999999999998876 45677778876643 2256889999999999998
Q ss_pred ChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhh
Q 011465 81 YPK-----------------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKL 132 (485)
Q Consensus 81 ~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~ 132 (485)
+.. --...|..|.+.|.+-.|+.-++.+++.-|+.+ +++..+..++..+|..
T Consensus 149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh
Confidence 632 124468889999999999999999999877654 5677788888777764
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.19 Score=46.41 Aligned_cols=102 Identities=23% Similarity=0.177 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRY 81 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-----~p~~ 81 (485)
.+..+..-+..|-..++|++|...+.+|.+-..++ +.++-..|.....+..+.|+...+++|..+ .|+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34556666777778899999999999999654433 566778888888899999999999999987 3443
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
+..-...+--....-+.++|+..|++++.+-..
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 334444455555677899999999999987543
No 314
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.26 E-value=0.012 Score=56.96 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=44.0
Q ss_pred CceeEecccC-CC-----------HHHHHHHHHHc-CCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEec
Q 011465 222 KHFTVCGDVH-GQ-----------FYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 222 ~~~~v~GDih-G~-----------~~dl~~il~~~-~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lr 288 (485)
-+++.+.|+| .. ...+.++++.+ ...+..+.+|+.||++|.|. .+-...+...-...+..++.++
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~ 92 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLP 92 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeC
Confidence 3588899999 11 34456666544 23334567999999999885 2222222222222345699999
Q ss_pred cCCCcc
Q 011465 289 GNHESK 294 (485)
Q Consensus 289 GNHE~~ 294 (485)
||||..
T Consensus 93 GNHD~~ 98 (275)
T PRK11148 93 GNHDFQ 98 (275)
T ss_pred CCCCCh
Confidence 999973
No 315
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.26 E-value=0.015 Score=55.20 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
-.+.|.-..+.|+.++|...++.|+.++|++++++...|.....-.+.-+|-.+|-+|+.++|.+.+++.+.+...
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3344555678899999999999999999999999999999999999999999999999999999999988776554
No 316
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.21 E-value=0.0099 Score=53.70 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCeEEcccccCCCCChH--HHHHHHHhchhcC----CCcEEEeccCCCcc
Q 011465 250 ENPYLFNGDFVDRGSFSV--EVILTLFAFKCMC----PSAIYLSRGNHESK 294 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~----p~~v~~lrGNHE~~ 294 (485)
.+..+|+||++|.|+.+. |....+-.++-.+ ...++.+.||||.-
T Consensus 43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 457999999999999642 3555554444222 25677899999964
No 317
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.20 E-value=0.0094 Score=59.41 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=43.5
Q ss_pred ceeEecccC-CC-----------HHHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHh--ch--hcCCCcEE
Q 011465 223 HFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA--FK--CMCPSAIY 285 (485)
Q Consensus 223 ~~~v~GDih-G~-----------~~dl~~il~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~--lk--~~~p~~v~ 285 (485)
+++.++|+| |. ...+.++++.+. ....+.+++.||++|+. +.+.+++.++.. ++ ...+-.|+
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~-~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSK-AHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHH-HcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 477888999 31 233344444332 22345799999999985 445555444432 22 12356899
Q ss_pred EeccCCCcc
Q 011465 286 LSRGNHESK 294 (485)
Q Consensus 286 ~lrGNHE~~ 294 (485)
++.|||+..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999974
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.16 E-value=0.11 Score=45.02 Aligned_cols=115 Identities=18% Similarity=0.110 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
..+-...+..........++.+++...+...--+.|..+.+-..-|..+...|++.+|+..++.+.+..|..+.+--.++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34556778888999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.|++.+|+.+-=... +.+++ .+.++++........
T Consensus 86 ~CL~~~~D~~Wr~~A-~evle-~~~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 86 LCLYALGDPSWRRYA-DEVLE-SGADPDARALVRALL 120 (160)
T ss_pred HHHHHcCChHHHHHH-HHHHh-cCCChHHHHHHHHHH
Confidence 999999987653332 22334 344666655444443
No 319
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.13 E-value=0.094 Score=59.11 Aligned_cols=114 Identities=13% Similarity=-0.050 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQNA-------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-~p~~~-------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
++|+.+-.|.+.=..+...++.++|.+..++||.. ++... .|+.|+=.+ -|.-+...+.|++|.+.. +
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqyc-d 1528 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYC-D 1528 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhc-c
Confidence 34666666777777777777888888888877753 33322 223333332 244455566677766653 3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
--..|..|..+|...+++++|.+.|+..++...+....|...+..+
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3456777788888888888888888888887777777777777666
No 320
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.1 Score=52.81 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 011465 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVK 109 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al 109 (485)
..-...|+.|+...+.+...|.....-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456789999999999999999998777777779999999999999999999999999988888776 899999999999
Q ss_pred HhCCCCHHHHHHHH
Q 011465 110 KLSPNDPDAAQKVK 123 (485)
Q Consensus 110 ~~~p~~~~~~~~l~ 123 (485)
+.+|+++..|...-
T Consensus 168 R~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYF 181 (568)
T ss_pred hcCCCChHHHHHHH
Confidence 99999998876443
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.07 E-value=0.03 Score=39.05 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+.+|..++++|+|++|..+.+.+++.+|++.++....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 344555556666666666666666666666665554433
No 322
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.04 E-value=0.016 Score=54.47 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHCCCcEEEeeccccccCcE---EecCCeEEEEecCCCCC
Q 011465 394 GADVTKRFLQDNSLDLVVRSHEVKDEGYE---IEHDGKLITVFSAPNYC 439 (485)
Q Consensus 394 g~~~~~~fl~~~~~~~iir~h~~~~~G~~---~~~~~~~~tvfsa~~y~ 439 (485)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~ 227 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADY 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchh
Confidence 45677888899999999999986322211 22455 5677776533
No 323
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.04 E-value=0.0091 Score=54.33 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 23 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
...+.+|.+.|.+.|.+++++.|....-|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456677777777777777777777777777777777777777777777777777765
No 324
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.00026 Score=68.77 Aligned_cols=193 Identities=10% Similarity=-0.118 Sum_probs=123.5
Q ss_pred CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhh--c--HHHHHHHHHHhc
Q 011465 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL--S--ETFVELFAEVFC 323 (485)
Q Consensus 248 ~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~--~--~~~~~~~~~~f~ 323 (485)
++....|+++++++++.++++.+-+-+..+..+...--.+++||+ ..++++.++.-.- + -.+++..++.+.
T Consensus 46 ~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~-----~~~~~R~~LVlp~l~S~riyvid~~~ep~~ 120 (476)
T KOG0918|consen 46 PDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHG-----DSSFKRRYLVLPSLNSGRIYVIDVKTEPRK 120 (476)
T ss_pred CcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhcc-----CcchhhhheeecccccCceEEEEeccCcCc
Confidence 444569999999999999999999999999999888888999993 3444444433221 1 246778889999
Q ss_pred cccccceeCCcEEEEeCccccCCCCChhhhhhccCCC--CC--CCCCcccccccCCCCCCCCCC---cCCCCCccccCHH
Q 011465 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC--EP--PEEGLMCELLWSDPQPLPGRG---PSKRGVGLSFGAD 396 (485)
Q Consensus 324 ~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~--~~--~~~~~~~~llw~dp~~~~~~~---~~~rg~~~~fg~~ 396 (485)
.++..++.+ +++|.||++ +|.......+-.+--.. +. ..++ -..++=+|-.....|. ..+++ |+.| -
T Consensus 121 ~~l~k~i~~-~il~~~~l~-~Pht~hcla~g~v~vs~lGd~~gn~kg-~f~llD~~~~~k~tw~~~~~~p~~-gyDf--w 194 (476)
T KOG0918|consen 121 PSLEKTIDP-DILEKTGLA-CPHTSHCLASGNVMVSCLGDAEGNAKG-GFLLLDSDFNEKGTWEKPGHSPLF-GYDF--W 194 (476)
T ss_pred cceeeeech-hhHhhcCCc-CCcccccccCCCeeEEeecccccCCcC-CeEEecCccceecccccCCCcccc-ccce--e
Confidence 999998877 999999998 77765544443322111 10 1111 2222222211111121 23433 2222 1
Q ss_pred HHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEec
Q 011465 397 VTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEA 453 (485)
Q Consensus 397 ~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~ 453 (485)
..-++......+...+.|.. .||...+-.-.++.++.+-|.-..+|.++.+.+.+
T Consensus 195 yqpr~~~mIstewgap~~~~--~gf~~~~v~d~lyg~~lhvy~w~~~~~~QtidL~~ 249 (476)
T KOG0918|consen 195 YQPRHNVMISTEWGAPNALR--KGFNPADVEDGLYGSHLHVYQWSPGELKQTIDLGD 249 (476)
T ss_pred eccccceEEeecccCchhhh--cCCChhHhhccceeeeeEEEecCCccceeEEecCC
Confidence 23455666777788888885 56654442223889999988877888899999833
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.96 E-value=0.2 Score=49.81 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=100.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C-C---
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS----QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--D-P--- 79 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p----~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--~-p--- 79 (485)
..+.+..|...+....+.|.++.|...+.++...++ ..+.+....+..+...|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 456678899999999999999999999999988652 25788888999999999999999999888871 0 0
Q ss_pred ----------------------------CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 80 ----------------------------RYPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 80 ----------------------------~~~~~~~~lg~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
..+.++..+|.....+ +..++++..|+++.+.+|+...+|...+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0135677788877777 888999999999999999999999998887
Q ss_pred HHHHh
Q 011465 126 EKAVK 130 (485)
Q Consensus 126 ~~~~~ 130 (485)
+..+-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 74443
No 326
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.92 E-value=0.53 Score=49.33 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--------- 80 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--------- 80 (485)
-..|...|..|...|+.+.|...+++|++..-. -+..|..-|..-+...+++.|+...++|...-..
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 356778888888888888888888888876532 3677888888777888888888888888765211
Q ss_pred ---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 81 ---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 81 ---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+...|..++......|-++.....|++.+.+.--.|....+.+..+. ....|+++...|+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE--eh~yfeesFk~YE 535 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE--EHKYFEESFKAYE 535 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 23456677777777888888888888888887777777777776653 3344777777777
No 327
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.015 Score=56.38 Aligned_cols=119 Identities=27% Similarity=0.433 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
.++.....|+..++.++|+.|..-|.++++.-. + -...+.+++.+-+..+.+..|+.....
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 344556678889999999999999999987421 1 123466788899999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+++.+++...+++..+..+..+.++++|++.++.+....|++......+..+.....+
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999887777666544443
No 328
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.05 Score=52.32 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=97.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.|.+.-++.---..++..|+...-...+++.+-. +|+. ....-.++.++...|-|++|.+..++|++++|.+..+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 3555555555667788889999999999998876 6665 34444578888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHhhcCCccccccc
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPESERHSV 148 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~ 148 (485)
..++.++...|++.++.+...+.-..-.+. ...+++--.++..+....++.|+.+|....+..
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~ 277 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKR 277 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999999999999999876542211110 011111112222244455788888877554443
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.016 Score=34.55 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
+++.+|.++..++++++|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344445555555555555555554444444
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.014 Score=34.81 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
++..+|.++...+++++|+.+++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555553
No 331
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.83 E-value=0.0015 Score=62.64 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=73.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHH
Q 011465 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136 (485)
Q Consensus 57 ~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 136 (485)
-.+..|.+++|++.+..|+.++|..+..|-..+.++..+++...|+..|..|+.++|+...-+...+.+...++. +++
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~ 200 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEE 200 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHH
Confidence 345678899999999999999999999999999999999999999999999999999998888888888877777 355
Q ss_pred hhcCCc
Q 011465 137 AIAVPE 142 (485)
Q Consensus 137 A~~~~~ 142 (485)
|...+.
T Consensus 201 aa~dl~ 206 (377)
T KOG1308|consen 201 AAHDLA 206 (377)
T ss_pred HHHHHH
Confidence 554444
No 332
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.92 Score=42.09 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=92.5
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~- 81 (485)
.+.-+.+.++-+.|..+.....+.++..+|++|..+ .|+.+..-...|--....-+.++|++.|++++.+--..
T Consensus 65 rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 65 RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 333445566666667777788889999999999886 36655555666666678889999999999998763332
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL----SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+.+-..+.++.++.++++|...+.+-... +.-+......++.++-.+-..++..|...+.
T Consensus 145 r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 145 RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 234455678889999999998887765433 2233333445555555566666777766666
No 333
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=95.80 E-value=0.018 Score=53.36 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=43.8
Q ss_pred eeEecccC-CCH--------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHh-chhc--CCCcEE
Q 011465 224 FTVCGDVH-GQF--------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA-FKCM--CPSAIY 285 (485)
Q Consensus 224 ~~v~GDih-G~~--------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~-lk~~--~p~~v~ 285 (485)
++.++|+| |.. ..+.++++..... ..+.+++.||++|....+.+.+..+.. ++.. .+..|+
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 66788888 321 1244444433222 345699999999988655544333322 2222 245789
Q ss_pred EeccCCCccccc
Q 011465 286 LSRGNHESKSMN 297 (485)
Q Consensus 286 ~lrGNHE~~~~~ 297 (485)
++.||||.....
T Consensus 81 ~~~GNHD~~~~~ 92 (223)
T cd00840 81 IIAGNHDSPSRL 92 (223)
T ss_pred EecCCCCCcccc
Confidence 999999976654
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.76 E-value=0.11 Score=48.01 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred HccCHHHHHHHHHHHHHh----C-CC--CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------ChHHH
Q 011465 26 RAKKYSQAIDLYSQAIEL----N-SQ--NAVYYANRAFAHTKLEEYG-------SAIQDASKAIEIDPR------YPKGY 85 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~----~-p~--~~~~~~~lg~~~~~~g~~~-------eAl~~~~~al~~~p~------~~~~~ 85 (485)
....+++|++.|.-|+-. . +. -+..+..+|.+|..+++-+ +|++.|++|++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345789999999988853 1 22 2677889999999999854 556666666654322 24678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
+.+|.++.++|++++|..+|.+++.....
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 88999999999999999999999986443
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.76 E-value=0.014 Score=53.15 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=57.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011465 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 56 ~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
....+.++.+.|.+.|.+|+++.|+....|+++|......|+++.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567889999999999999999999999999999999999999999999999999998754
No 336
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.76 E-value=0.28 Score=48.97 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFR---AKKYSQAIDLYSQAI-ELNSQNAVYYANRAFAHTK---------LEEYGSAIQDASKAIE 76 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~---~g~~~~A~~~y~~al-~~~p~~~~~~~~lg~~~~~---------~g~~~eAl~~~~~al~ 76 (485)
.++.....+++|.++.+ .|+.++|++.+..++ ...+.+++.+..+|.+|.. ....++|+.+|.++.+
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 44566677888888888 999999999999944 5567789999999998864 2247899999999999
Q ss_pred hCCC
Q 011465 77 IDPR 80 (485)
Q Consensus 77 ~~p~ 80 (485)
.+|+
T Consensus 255 ~~~~ 258 (374)
T PF13281_consen 255 IEPD 258 (374)
T ss_pred CCcc
Confidence 8865
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.12 Score=53.87 Aligned_cols=96 Identities=25% Similarity=0.251 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.+.+-|..+++..+|..|++.|...++.-|.+ +....+++.||+.+.+.+.|++++++|-+.+|.++......-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46677888899999999999999999976654 566778999999999999999999999999999999888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 011465 90 AAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~ 111 (485)
.+....+.-++|+....+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8889999999999998877654
No 338
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.74 E-value=0.068 Score=41.96 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhh
Q 011465 66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL 132 (485)
Q Consensus 66 eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~ 132 (485)
..++.++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.+...++..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34678899999999999999999999999999999999999999998765 56677777777777664
No 339
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.31 Score=45.56 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=97.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH-HH
Q 011465 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK-EA 101 (485)
Q Consensus 24 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-eA 101 (485)
+.+...-+.|+++...+|.++|.+...|..+-.++..++ +..+-++++.+.++-+|.+-+.|...-.+...+|+.. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 334456688999999999999999999999988887765 6888899999999999999999999999999999988 88
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011465 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
++..+.++..+.++--+|....-+.+..+..
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 9999999999999999999999988877763
No 340
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=95.49 E-value=0.025 Score=49.51 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCCCeEEcccccCCCCChH-HH----HHHHHhchhcC-CCcEEEeccCCCccc
Q 011465 249 EENPYLFNGDFVDRGSFSV-EV----ILTLFAFKCMC-PSAIYLSRGNHESKS 295 (485)
Q Consensus 249 ~~~~~vflGD~vdrG~~s~-e~----l~~l~~lk~~~-p~~v~~lrGNHE~~~ 295 (485)
..+.++++||++|.|..+. +. +..+..+.... +..+++++||||...
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 3467999999999886432 22 22222221111 356999999999743
No 341
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=95.43 E-value=0.036 Score=51.67 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCCeEEcccccCCCCCh---HHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 250 ENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s---~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
.+.++++||+++....+ -++..++-.+ ...+++++||||...
T Consensus 59 ~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 59 IEALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNHDALI 103 (225)
T ss_pred CCEEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCCCCcc
Confidence 45799999999765542 2222233222 247999999999754
No 342
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.38 E-value=0.047 Score=55.67 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCCCeEEcccccCCCCChHHHHH----HHHhchhcCCCcEEEeccCCCccc
Q 011465 249 EENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 249 ~~~~~vflGD~vdrG~~s~e~l~----~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
..+.+++.||++|++..+.+... ++..|+- .+..|+++.||||...
T Consensus 39 ~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 39 QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSVA 88 (407)
T ss_pred CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEcCCCCChh
Confidence 35679999999999865554332 2333432 2456999999999753
No 343
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.27 E-value=0.41 Score=42.83 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011465 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
.++..+|..|.+.|+.++|+++|.++....... ...++.+-.+....+++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544332221 22334444444444555554444444443
No 344
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.21 E-value=0.29 Score=49.89 Aligned_cols=116 Identities=19% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011465 5 ETENSSVSRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (485)
Q Consensus 5 ~~~~~~~~~a~~~~~lg~~~~~~g----~~~~A~~~y~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~ 78 (485)
+++.+...++..++..|...-+.. +..+..-..-..+...+.+ ..+...+|.|..++|+.+||++.++..++..
T Consensus 210 EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 210 EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 344556777777887776554332 2222222222333222232 4556678888899999999999999988877
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHH
Q 011465 79 PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-SPNDPDAAQ 120 (485)
Q Consensus 79 p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~ 120 (485)
|. +...+.+|..++..+++|.++...+.+.-.+ -|+.+...+
T Consensus 290 p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 290 PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 75 4567888889999999999988888775433 244444433
No 345
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.4 Score=49.69 Aligned_cols=115 Identities=17% Similarity=0.013 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCChHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-AIEIDPRYPKGYYRR 88 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~-al~~~p~~~~~~~~l 88 (485)
+|+-.-+.+ +...+...++...|......++..+|.++.+..+||.+....|....++..+.+ +....|++......+
T Consensus 64 ~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 64 NPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred CHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 344333333 566777788888999999999999999999999999999888877666666555 899999988776666
Q ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 89 ------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 89 ------g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
+.....+|+..++.....++..+.|+++.+...+...
T Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 143 IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888888999999999999999999997765555444
No 346
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.10 E-value=0.06 Score=46.67 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=78.7
Q ss_pred eEecccCCCHHHHHHHHHHc-CCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCch
Q 011465 225 TVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (485)
Q Consensus 225 ~v~GDihG~~~dl~~il~~~-~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~ 303 (485)
.|+||+||+++.+..-++.. .....=+-++++||+..-...+ +-+.-.+.=....|--++++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence 48999999999998876653 2222234689999999755554 3344444445677888999999998
Q ss_pred hHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCC
Q 011465 304 GEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRG 383 (485)
Q Consensus 304 ~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~ 383 (485)
+-+||+.|.=+ . .+...+++. .+
T Consensus 69 ----------------------------~~DILlTh~wP-~-gi~~~~~~~-------------------~~-------- 91 (150)
T cd07380 69 ----------------------------GVDILLTSEWP-K-GISKLSKVP-------------------FE-------- 91 (150)
T ss_pred ----------------------------CCCEEECCCCc-h-hhhhhCCCc-------------------cc--------
Confidence 45799999432 1 111111110 00
Q ss_pred cCCCCCccccCHHHHHHHHHHCCCcEEEeeccc
Q 011465 384 PSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 384 ~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
+.+..-|...+.++++...=++.+-||.-
T Consensus 92 ----~~~~~~GS~~i~~l~~~lkPrYhf~gh~~ 120 (150)
T cd07380 92 ----ETLLICGSDLIAELAKKLKPRYHFAGLEG 120 (150)
T ss_pred ----ccccCCCCHHHHHHHHHcCCCeEeecCCC
Confidence 01223477889999999999999999975
No 347
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.05 E-value=0.069 Score=54.21 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=51.7
Q ss_pred CceeEecccCCC------------HHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhc----------
Q 011465 222 KHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---------- 279 (485)
Q Consensus 222 ~~~~v~GDihG~------------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~---------- 279 (485)
.++.++.|+|-. +..+.++++.+. ....+.+++.||+.|++.-|.+++..++.+--.
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~-~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~ 82 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAK-EQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCEL 82 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHH-HcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccch
Confidence 358889999943 345556666543 233567999999999999998888665443211
Q ss_pred --------------------------CCCcEEEeccCCCcccc
Q 011465 280 --------------------------CPSAIYLSRGNHESKSM 296 (485)
Q Consensus 280 --------------------------~p~~v~~lrGNHE~~~~ 296 (485)
..--||.+-||||...-
T Consensus 83 ~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 83 EFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred hhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccc
Confidence 13479999999998653
No 348
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.94 E-value=0.05 Score=52.99 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeE
Q 011465 394 GADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKL 429 (485)
Q Consensus 394 g~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~ 429 (485)
....+.+.+++.++++++-||.-.-+-.....++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~ 216 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTV 216 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEe
Confidence 445678889999999999999975433333334444
No 349
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.88 E-value=0.41 Score=41.62 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
.....+..+-...++.+++...+.-.--+.|..+..-..-|.++...|+|.+|+..++.+.+..|..+.+...++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44556666777888999999999998899999999999999999999999999999999999999999999999999977
Q ss_pred Hhhh
Q 011465 129 VKKL 132 (485)
Q Consensus 129 ~~~~ 132 (485)
++..
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 7764
No 350
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.22 Score=47.02 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
...++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445556778889999999999999999999999999999999999999999999999999999999876554443
No 351
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.74 E-value=0.044 Score=55.17 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIE-L--------NS---------QNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~-~--------~p---------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
.-.|.++|.++++.+.|+.+..+|.+||+ . .| ....+.++.|..|+..|+.-.|.++|.+++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 34568999999999999999999999996 1 11 246789999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHH
Q 011465 76 EIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~ 94 (485)
...-.++..|.++|.|...
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999988764
No 352
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.71 E-value=0.11 Score=47.99 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred ceeEecccCCCHHHHH----------------HHHHHcCCCCCCCCeEEcccccCCCCC-----hHHHHHHHHhchhcCC
Q 011465 223 HFTVCGDVHGQFYDLL----------------NIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCP 281 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~----------------~il~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~lk~~~p 281 (485)
+..|+.|+|=.+..-+ +.+...-.....+.+|++||.-.-.+. ..|+-.++-.++..
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~-- 98 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER-- 98 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC--
Confidence 6899999996555444 222211112234579999999843332 34555555444433
Q ss_pred CcEEEeccCCCccccccccCc
Q 011465 282 SAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 282 ~~v~~lrGNHE~~~~~~~~~f 302 (485)
.++++||||+...-....++
T Consensus 99 -evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 99 -EVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred -cEEEEeccCCCccccccccC
Confidence 59999999998766655554
No 353
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.70 E-value=0.17 Score=43.24 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011465 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
.+.+.+|||+.-.-..--+...++-.| |++++|++|||+...-....+|
T Consensus 46 ~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~~~~~~ 94 (186)
T COG4186 46 DDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPMYRHAY 94 (186)
T ss_pred cceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcccccchh
Confidence 457999999985333333333333333 7999999999998665544444
No 354
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.67 E-value=0.058 Score=48.66 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=42.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH-HHHHHhchhcC---------------------CCcEEE
Q 011465 229 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV-ILTLFAFKCMC---------------------PSAIYL 286 (485)
Q Consensus 229 DihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~-l~~l~~lk~~~---------------------p~~v~~ 286 (485)
|++|+=.=|.++++..-+-..++..+||||++|+|--+-+- -...-..+-.+ ...+++
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 66676666777888766555567799999999998533322 12222222111 246788
Q ss_pred eccCCCc
Q 011465 287 SRGNHES 293 (485)
Q Consensus 287 lrGNHE~ 293 (485)
+.||||.
T Consensus 104 V~GNHDI 110 (193)
T cd08164 104 IAGNHDV 110 (193)
T ss_pred ECCcccC
Confidence 9999998
No 355
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.63 E-value=0.55 Score=46.88 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCChHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKAI-EIDPRYPKGYY 86 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eAl~~~~~al-~~~p~~~~~~~ 86 (485)
+...++=..|-...+|+.-+++.+..-.+ -++.......+|.++-+ .|+.++|+..+..++ ...+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 44455555667777777777777765554 34456677778888877 788888888888744 44556777888
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 011465 87 RRGAAYLAM---------GKFKEALKDFQQVKKLSPND 115 (485)
Q Consensus 87 ~lg~~~~~~---------g~~~eA~~~~~~al~~~p~~ 115 (485)
.+|.+|..+ ...++|+..|.++.+.+|+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 888877654 24577888888888887644
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.49 E-value=1.7 Score=37.21 Aligned_cols=89 Identities=12% Similarity=-0.027 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
.-...+...........+.+++...+...--+.|+.+.+-..-|..+...|++.+|+..++...+..+..+.+.-.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34456666777777789999999998888888999999999999999999999999999999988888888888889999
Q ss_pred HHHcCCHHH
Q 011465 92 YLAMGKFKE 100 (485)
Q Consensus 92 ~~~~g~~~e 100 (485)
++.+|+.+-
T Consensus 88 L~al~Dp~W 96 (153)
T TIGR02561 88 LNAKGDAEW 96 (153)
T ss_pred HHhcCChHH
Confidence 999998754
No 357
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.38 E-value=1.1 Score=44.37 Aligned_cols=104 Identities=7% Similarity=-0.000 Sum_probs=78.9
Q ss_pred CCchhHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKK------------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~------------~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
..+|.+.++|..+....-..-. .+..+..|++||+.+|++...+..+-.+..+.-+.++..+-+++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4578888898888866554422 4567788999999999999998888888888888888899999999
Q ss_pred HhCCCChHHHHHHHHHHHH-c--CCHHHHHHHHHHHHHh
Q 011465 76 EIDPRYPKGYYRRGAAYLA-M--GKFKEALKDFQQVKKL 111 (485)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~-~--g~~~eA~~~~~~al~~ 111 (485)
..+|++...|...-..... . -.+++....|.++++.
T Consensus 93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999988888765433222 2 3466777777777754
No 358
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=94.35 E-value=0.11 Score=49.68 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHHHHHHCCCcEEEeeccccccCcEEecC
Q 011465 398 TKRFLQDNSLDLVVRSHEVKDEGYEIEHD 426 (485)
Q Consensus 398 ~~~fl~~~~~~~iir~h~~~~~G~~~~~~ 426 (485)
+.+.+++.++++++-||.-...+....+-
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h~ 218 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVHY 218 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeeee
Confidence 77888999999999999987777455543
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.87 Score=40.81 Aligned_cols=89 Identities=19% Similarity=0.054 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-AAQKVKEC 125 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~l~~~ 125 (485)
+-..+|..+...+++++|+..++.++....+. .-+-.++|.++.++|++++|++.+...-. ++... .-...|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 35567888999999999999999999764442 45678899999999999999998864321 22122 23345677
Q ss_pred HHHHhhhhHHHhhcCCc
Q 011465 126 EKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 126 ~~~~~~~~~~~A~~~~~ 142 (485)
+...++ -.+|...|+
T Consensus 169 ll~kg~--k~~Ar~ay~ 183 (207)
T COG2976 169 LLAKGD--KQEARAAYE 183 (207)
T ss_pred HHHcCc--hHHHHHHHH
Confidence 755554 467777666
No 360
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.17 Score=46.79 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=97.4
Q ss_pred EecccCCC-----HH-HHHHHHHHcCCCCCCCCeEEcccccCC--CC----ChHHHHHHHHhchhcCCCcEEEeccCCCc
Q 011465 226 VCGDVHGQ-----FY-DLLNIFELNGLPSEENPYLFNGDFVDR--GS----FSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 226 v~GDihG~-----~~-dl~~il~~~~~~~~~~~~vflGD~vdr--G~----~s~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
.+.|+|=. .. -+.+.++. .++..+.++++||++|- |. ...+-+..-+.-....+.+|+.+.|||+.
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~--~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Df 79 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLRE--EAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDF 79 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHh--ccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHH
Confidence 35677732 22 23334443 33345679999999962 22 22222222223334567999999999994
Q ss_pred cccccccCchhHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCC-------CCCC
Q 011465 294 KSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRF-------CEPP 363 (485)
Q Consensus 294 ~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~-------~~~~ 363 (485)
.+...++-. . -.+.-+|=..++ +.+++.+||....+....-...+...+. ...+
T Consensus 80 -ll~~~f~~~------~---------g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~ 143 (237)
T COG2908 80 -LLGKRFAQE------A---------GGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLP 143 (237)
T ss_pred -HHHHHHHhh------c---------CceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhH
Confidence 332222100 0 112234433333 6899999998754322110000000000 0000
Q ss_pred CC--CcccccccCCCCCCCCCCcCCCCCc---cccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCC
Q 011465 364 EE--GLMCELLWSDPQPLPGRGPSKRGVG---LSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNY 438 (485)
Q Consensus 364 ~~--~~~~~llw~dp~~~~~~~~~~rg~~---~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y 438 (485)
.. .-+..=+|+.- .|.+...... ....+.++.+-++.++++.+|-||.-....-...--.+| -..+
T Consensus 144 l~~R~ri~~k~r~~s----~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi----~lGd- 214 (237)
T COG2908 144 LRVRRRIAYKIRSLS----SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYI----NLGD- 214 (237)
T ss_pred HHHHHHHHHHHHHhh----HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEE----ecCc-
Confidence 00 00011123321 1111111111 135677888889999999999999976555544321111 1111
Q ss_pred CCCCCCeEEEEEEecCCCc
Q 011465 439 CDQMGNKGAFIRFEAPTLK 457 (485)
Q Consensus 439 ~~~~~n~~a~~~~~~~~~~ 457 (485)
-...++++.+.++.++
T Consensus 215 ---W~~~~s~~~v~~~~~~ 230 (237)
T COG2908 215 ---WVSEGSILEVDDGGLE 230 (237)
T ss_pred ---chhcceEEEEecCcEE
Confidence 2255789999544433
No 361
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.97 E-value=0.13 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
++.++|.+|...|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555444
No 362
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=93.94 E-value=0.11 Score=49.12 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=27.5
Q ss_pred CCCeEEcccccCCCCC------------hHH----HHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 250 ENPYLFNGDFVDRGSF------------SVE----VILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~------------s~e----~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
.+.+|++||++|+... ..+ +..++-.| ..+-.|+++.||||...
T Consensus 36 ~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 36 VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDV--PSHIKIIIIPGNHDAVR 95 (243)
T ss_pred ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhc--ccCCeEEEeCCCCCccc
Confidence 4679999999997310 111 22222223 23467999999999753
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.92 E-value=1.3 Score=43.86 Aligned_cols=93 Identities=8% Similarity=0.033 Sum_probs=77.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 011465 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (485)
Q Consensus 34 ~~~y~~al~~~p~~~~~~~~lg~~~~~~g~------------~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 101 (485)
...|++.++.+|.+..+|..+....-..-. .+..+..|++|++.+|++...+..+-.+..+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 356788899999999999998876544322 46678899999999999999999888888899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 102 LKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+-+++++...|+++..|...-...
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999999999999887554443
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.87 E-value=0.81 Score=48.84 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRA-----KKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIE 76 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~-----g~~~~A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~eAl~~~~~al~ 76 (485)
..+.+.+.+|.+++.- .|.+.|+.+|+.+.+. .-..+.+.+.+|.+|.+.. +.+.|+.+|.+|-+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3455666777776644 5899999999999871 1225678899999998843 67889999999988
Q ss_pred hCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 77 IDPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
. +++.+.+.+|.++..-. +...|.++|..|... .+..+...++.|+..
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 7 46678899999998766 678999999988764 578888999988743
No 365
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.87 E-value=0.11 Score=49.42 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=40.1
Q ss_pred ceeEecccCCCH---------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChH-----HHHHHHHhchhcCCCcEEEec
Q 011465 223 HFTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 223 ~~~v~GDihG~~---------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~p~~v~~lr 288 (485)
+++.++|+||.+ ..+..+++...-......++..||+++.++.+. .++..+-.+ -+ .+ +..
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~---g~-d~-~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL---GY-DA-VTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc---CC-CE-Eee
Confidence 378899999876 455556655432222334677899999887653 344333333 22 33 335
Q ss_pred cCCCc
Q 011465 289 GNHES 293 (485)
Q Consensus 289 GNHE~ 293 (485)
||||.
T Consensus 77 GNHe~ 81 (252)
T cd00845 77 GNHEF 81 (252)
T ss_pred ccccc
Confidence 99996
No 366
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.70 E-value=0.15 Score=49.16 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=46.4
Q ss_pred CCceeEecccCCCHHH--HHHHHHHc-CCCCCCCCeEEcccccCC-CCChH-HHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 221 GKHFTVCGDVHGQFYD--LLNIFELN-GLPSEENPYLFNGDFVDR-GSFSV-EVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 221 ~~~~~v~GDihG~~~d--l~~il~~~-~~~~~~~~~vflGD~vdr-G~~s~-e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
+.+++-+.|+|-.... ....+... ...+ +-+++.|||+|+ .+... .++..|..|+ .|-.||.+-||||...
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~--DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~ 119 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELP--DLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGV 119 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCC--CEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEeccccccc
Confidence 3468889999976555 22222222 2222 679999999996 55444 4444555554 5678999999997654
Q ss_pred cc
Q 011465 296 MN 297 (485)
Q Consensus 296 ~~ 297 (485)
-.
T Consensus 120 ~~ 121 (284)
T COG1408 120 DR 121 (284)
T ss_pred cc
Confidence 33
No 367
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.69 E-value=0.16 Score=32.87 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN 44 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~ 44 (485)
+.++..+|..|..+|++++|++++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5678999999999999999999999999863
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.65 E-value=2.2 Score=41.24 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCC
Q 011465 14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 14 a~~~~~lg~~~~~----~g~~~~A~~~y~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~eAl~~~~~al~~~p~~ 81 (485)
+.+.+.+|..+.. ..|+.+|...|.+|.+..-.. ..+...+|.+|..-. +...|...|.+|-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3455556665554 336666666666666543222 233555665554431 1225666666655553 5
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011465 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
+.+.+.+|.+|.. ..++++|..+|++|-+... ..+.+.++
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 5566666655543 2356666666666665544 45555555
No 369
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.63 E-value=1.5 Score=44.22 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH--HHHHHHh---------CC
Q 011465 12 SRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQD--ASKAIEI---------DP 79 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~-~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~--~~~al~~---------~p 79 (485)
.-+..+..-|..++..|. -++|+..++.+++..|.+...-.. -.. +-...|.+|+.. +.+.+.+ .|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~-v~~-fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENI-VFL-FVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH-HHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345667777888999988 788999999999988877533221 111 111123333221 1121211 11
Q ss_pred ---CChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 80 ---RYPKGYYRR--GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 80 ---~~~~~~~~l--g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+.+.-..+ |.-++..|+|.++..+-.-..+++| ++.++..+|.|+ ....+|.+|+.++.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l--~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCL--MENKRYQEAWEYLQ 519 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHH--HHHhhHHHHHHHHH
Confidence 122333333 3444566777777776666666677 666777777666 33334667766554
No 370
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.5 Score=44.65 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
....+=..+...++++.|...-++.+.++|.++.-+..+|.+|.++|.+..|++.++..++.-|+.+.+-.-.+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344455678889999999999999999999999999999999999999999999999999999998877655443
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.55 E-value=0.66 Score=46.97 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=91.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 011465 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK 99 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 99 (485)
--...+..||...|-+....+++..|.++......+.+...+|.|+.|.+.+.-+-..-..-..+...+-..+..+|+++
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 33455678999999999999999999999999999999999999999998887666554444556666667788999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|+..-...+.-.-++++....-+..-.+++- ++++..+.+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~--~d~~~~~wk 415 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQL--FDKSYHYWK 415 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhH--HHHHHHHHH
Confidence 99999888887766777765444433333333 455554433
No 372
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.44 E-value=1 Score=47.36 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------------------QNAVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p------------------~~~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
+-+..|..-|..-++..+++.|+.+.++|...-. .+...|..++......|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4567788888888888888888888888875411 1235677777777788888888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH-HHHHHHHHhhhhHHHhhcCCc
Q 011465 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQK-VKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~-l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+.+.--.|+.-.+.|..+..-.-+++|.+.|++.+.+.+ .-.+.|.. |-..-...+..+.+.|..+++
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8888777778888888888888888888888888887753 33444442 222222333334555555555
No 373
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.39 E-value=0.2 Score=47.89 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=75.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 011465 37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND 115 (485)
Q Consensus 37 y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (485)
|.++-...|+++..|...+.-..+.+-+.+--..|.+++..+|.+++.|.. -+.-+...++.+.|...|.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678899999999988888899999999999999999999999986 5667778899999999999999999999
Q ss_pred HHHHHHHHH
Q 011465 116 PDAAQKVKE 124 (485)
Q Consensus 116 ~~~~~~l~~ 124 (485)
|..|...-.
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 988765443
No 374
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.38 E-value=1.5 Score=39.13 Aligned_cols=99 Identities=20% Similarity=0.123 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChH-
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPK- 83 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--~~~- 83 (485)
..+--.++..+|..|.+.|+.+.|++.|.++....... ...+.++-.+.+..+++..+..+..+|-..-.. +..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 34455789999999999999999999999988765432 466778888889999999999999998776322 222
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011465 84 ---GYYRRGAAYLAMGKFKEALKDFQQV 108 (485)
Q Consensus 84 ---~~~~lg~~~~~~g~~~eA~~~~~~a 108 (485)
....-|..+...++|.+|...|-.+
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 2334567777788888888888544
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.36 E-value=0.94 Score=34.20 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg---~~~~~~g~~~eAl~~~~~al~ 76 (485)
.+......|.-++.+.+.++|+..++++++..++.+..+..+| .+|...|+|++++++.-+=++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777777777766665555443 455667777777666555444
No 376
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.22 E-value=1.2 Score=37.71 Aligned_cols=116 Identities=26% Similarity=0.378 Sum_probs=84.6
Q ss_pred eeEecccC--CCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccC
Q 011465 224 FTVCGDVH--GQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (485)
Q Consensus 224 ~~v~GDih--G~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (485)
+.++||+| -+..+|-.=|++.-.|..-.+++.+|+.- |-|+..+|-.+- +.|+++||-.+..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 67899998 46777777788777777777899999964 789999987763 7899999987653
Q ss_pred chhHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCC
Q 011465 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 378 (485)
Q Consensus 302 f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 378 (485)
. ..|..-+| .=++-||||-. -+=|+||.
T Consensus 67 ------~---------------~yP~~kvvtvGqfkIG~chGhq---------------------------ViP~gd~~- 97 (183)
T KOG3325|consen 67 ------L---------------KYPENKVVTVGQFKIGLCHGHQ---------------------------VIPWGDPE- 97 (183)
T ss_pred ------c---------------cCCccceEEeccEEEEeecCcE---------------------------eecCCCHH-
Confidence 1 12322222 23788999754 11277764
Q ss_pred CCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcE
Q 011465 379 LPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE 422 (485)
Q Consensus 379 ~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~ 422 (485)
.+.-.-++.+++.++-||+..-+-|+
T Consensus 98 ------------------sL~~LaRqldvDILl~G~Th~f~Aye 123 (183)
T KOG3325|consen 98 ------------------SLALLARQLDVDILLTGHTHKFEAYE 123 (183)
T ss_pred ------------------HHHHHHHhcCCcEEEeCCceeEEEEE
Confidence 57788899999999999998766665
No 377
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.07 E-value=2.1 Score=42.51 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY-YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~-~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
..+-++...++...-.|+++.|.+.|+.-+. +|..-.+ +-.|-......|..+.|..+.+++-+..|.-+.++...-.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3455667778888889999999999987654 4432211 1122223346789999999999999999998888888778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 011465 91 AYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~ 112 (485)
.....|+|+.|++..+...+..
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHH
Confidence 8888999999999887766543
No 378
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.03 E-value=1.2 Score=44.31 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-C--------------------------------CHHHHHHHHHHH
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-S-Q--------------------------------NAVYYANRAFAH 58 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-p-~--------------------------------~~~~~~~lg~~~ 58 (485)
.+...+..+..+...|+..+|+..++..++.. . . .+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999888711 0 0 134566667766
Q ss_pred HHc------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 011465 59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN 114 (485)
Q Consensus 59 ~~~------g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~eA~~~~~~al~~~p~ 114 (485)
... +..++++..|++|+..+|+...+|+.+|..+..+=+. ..|+..|-+++...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 667 7889999999999999999999999999887765222 2367777777776665
No 379
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.33 Score=45.39 Aligned_cols=121 Identities=13% Similarity=0.125 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYS-QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~-~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
.++|++-+.|...-.+.-..|++. .-++..+.++..+.++..+|..+-.+....+.++.-+++..+.++.|-.+-.+|.
T Consensus 106 e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 106 EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 345666667777766666777766 6677777777777777777777777777777777777777777777766666665
Q ss_pred HHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 87 RRGAAYLA-MG-----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 87 ~lg~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
..-.+... .| ..+.-+.+..+.+.+.|+|..+|..+..++..
T Consensus 186 ~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 186 QRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 54322222 11 23445566677777778888888887766643
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.97 E-value=1 Score=37.83 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 14 AEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 14 a~~~~~lg~~~~~~g---~~~~A~~~y~~al~-~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+..+++|..+.... +.++.+..++..++ ..|. .-+..+.||..+.++++|++|+.+.+..++.+|+|.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 356678888887655 46679999999997 4454 356778899999999999999999999999999999886654
Q ss_pred HHH
Q 011465 89 GAA 91 (485)
Q Consensus 89 g~~ 91 (485)
-.+
T Consensus 112 ~~i 114 (149)
T KOG3364|consen 112 ETI 114 (149)
T ss_pred HHH
Confidence 433
No 381
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.81 E-value=5.6 Score=38.35 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC----C---CC-------HHHHHHHHHHHHHccCHH---HHHHH
Q 011465 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELN----S---QN-------AVYYANRAFAHTKLEEYG---SAIQD 70 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g-~~~~A~~~y~~al~~~----p---~~-------~~~~~~lg~~~~~~g~~~---eAl~~ 70 (485)
....-++.+|+.|...+..+ +++.|...+++|+++- + .. ...+..++.+|...+.++ +|...
T Consensus 30 ~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 30 MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 34566788999999999999 9999999999999882 1 11 345677899998888754 45555
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 71 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
.+.+-.-.|+.+..+...-.+....++.+++.+.+.+++..-+
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 5555556677777775555566668999999999999998654
No 382
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=92.67 E-value=0.25 Score=49.45 Aligned_cols=69 Identities=23% Similarity=0.362 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--HHHHHHHHhchhcCC----CcEEEeccCCCccccccccCchhHH
Q 011465 233 QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESKSMNKIYGFEGEV 306 (485)
Q Consensus 233 ~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p----~~v~~lrGNHE~~~~~~~~~f~~e~ 306 (485)
+-.-|.+.|+..-+...++..+||||++|-|... -|--.....+|-.+| ..++-+.||||- ||..|.
T Consensus 77 ~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI-------Gf~~~~ 149 (410)
T KOG3662|consen 77 NDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI-------GFGNEL 149 (410)
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc-------cccccc
Confidence 3344556777666666677899999999999764 233334444554444 477788999997 666554
Q ss_pred Hh
Q 011465 307 RS 308 (485)
Q Consensus 307 ~~ 308 (485)
..
T Consensus 150 ~~ 151 (410)
T KOG3662|consen 150 IP 151 (410)
T ss_pred ch
Confidence 44
No 383
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.60 E-value=1.1 Score=48.33 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHccCHHHHH
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQA----------IELNSQ----------NAVYYANRAFAHTKLEEYGSAI 68 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~eAl 68 (485)
+...--..|++.|..+-..+|.+.|+++|+++ |..+|. ++..|.--|..+...|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 33444567899999999999999999999985 223443 4566777788888999999999
Q ss_pred HHHHHHHHh---------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011465 69 QDASKAIEI---------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 69 ~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
..|..|-.. ...+..+.+.+|..|...|++.+|+..|-+|-.
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999887632 345667889999999999999999988766543
No 384
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=1.5 Score=37.51 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=70.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
......+-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+-..-.++.|+..++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444555568899999999988888999999999999999999999999999999999888888888889999997777
Q ss_pred hh
Q 011465 131 KL 132 (485)
Q Consensus 131 ~~ 132 (485)
+-
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 64
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.52 E-value=1.7 Score=43.62 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=69.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------C------------CCCh---HHHHHHHH
Q 011465 40 AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------D------------PRYP---KGYYRRGA 90 (485)
Q Consensus 40 al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--------------~------------p~~~---~~~~~lg~ 90 (485)
.++.+|.+.+.+..++.++..+|+++.|.+..++|+-. + ++|. .+.++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999999998732 1 1222 35566778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEK 127 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~ 127 (485)
.+.+.|.+..|.+..+-.+.++|. ||-.....-..+.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A 149 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA 149 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 888999999999999999999998 7765554444443
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.27 E-value=0.51 Score=48.86 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
-.+.++|++..+-+-...|-..+.++|.++...+..++.+|.+++.+.+.+.|++.+++|+.++|+++..-..|-
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 347889999999998899999999999999888999999999999999999999999999999999987765543
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.15 E-value=2.3 Score=45.44 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 16 ELKALANEAFRAK-----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 16 ~~~~lg~~~~~~g-----~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
+.+.+|.+|.+.. +++.|+.+|.++-+. .++.+.+.+|.++.... ++..|..+|..|... .+..+.+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 4667888888743 788999999999775 45778888999887665 578999999998876 67889999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 88 lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
+|.||..- .+...|..+|+++.+.. .+.+...++..+
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 99998853 57899999999999876 566666666555
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.05 E-value=1.3 Score=49.84 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=80.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 19 ALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g-------~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
....++...+.|++|+..|++.-.-.|.. .+|.+..|.+...+- .+++|+..|++.- -.|.-+--|.-.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 34567888899999999999988888764 578888888876532 3667777776633 356667778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
|.+|.++|+++|-+++|.-|++..|+.|....
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999999999987543
No 389
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.96 E-value=0.27 Score=47.04 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~-lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
..-+.++..|...+....+.+-|.+--..|.+++..+|.+++.|.. -+.-+...++++.+.+.+.++++.+|+++..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4457788899999999999999999999999999999999999987 556677889999999999999999999998886
Q ss_pred HH
Q 011465 87 RR 88 (485)
Q Consensus 87 ~l 88 (485)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 54
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.96 E-value=0.84 Score=36.05 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=29.9
Q ss_pred HccCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 60 KLEEYGSAIQDASKAIEIDPR---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 60 ~~g~~~eAl~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..++.|+++..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455555555555554433211 123455666666666777777666666666543
No 391
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.80 E-value=1 Score=46.02 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+...|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|.+.+.++++.+|+++..|...
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 3566777777777777779999999999999999999999999998888776 9999999999999999998877543
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.78 E-value=0.61 Score=44.73 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011465 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 67 Al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
|..+|.+|+.+.|+++..|..+|.++...|+.=+|+-+|-+++......+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888776655556677777666544
No 393
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.63 E-value=1.5 Score=35.51 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=58.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCCHHHH
Q 011465 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKF-----------KEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 54 lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~-----------~eA~~~~~~al~~~p~~~~~~ 119 (485)
+|..++..|++-+|++..+..+..++++. ..+..-|.++..+..- --|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999988876 4555668888776532 458999999999999987777
Q ss_pred HHHHHH
Q 011465 120 QKVKEC 125 (485)
Q Consensus 120 ~~l~~~ 125 (485)
+.++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 777754
No 394
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=1.4 Score=45.89 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 011465 31 SQAIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ- 107 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~~~~~~~~--lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~- 107 (485)
..|+..+...+.++|.++..... +...+...+....+......++..+|+++.++.+||.+....|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34777788888888888877443 477777888888999999999999999999999999999988887777766555
Q ss_pred HHHhCCCCHHHHHHHHHHHH
Q 011465 108 VKKLSPNDPDAAQKVKECEK 127 (485)
Q Consensus 108 al~~~p~~~~~~~~l~~~~~ 127 (485)
+....|++......+-.+++
T Consensus 128 a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHhcCcchHHHHhhHHHHHH
Confidence 88999999998888855554
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.59 E-value=1 Score=35.55 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=46.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 22 NEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
....+.+||.+|++.+.+.+..... ...+..++|.++...|++++|+..+++|+++
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456789999999998888875322 2467788999999999999999999999975
No 396
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=3.5 Score=39.50 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHH----------------------------------HHHhCCCCHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQ----------------------------------AIELNSQNAVYYANRA 55 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~----------------------------------al~~~p~~~~~~~~lg 55 (485)
.++..++...++.++...|+.+.|...+.. .+..+|++..+.+.+|
T Consensus 164 ~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA 243 (304)
T COG3118 164 APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALA 243 (304)
T ss_pred CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 345567788888899988888777666544 1123799999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011465 56 FAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 56 ~~~~~~g~~~eAl~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
..+...|+.++|++.+-..++.+-. +..+.-.+-.++...|.-+.+...++
T Consensus 244 ~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 244 DQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998887654 45566666666665554444444443
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.35 E-value=0.7 Score=29.31 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q 011465 15 EELKALANEAFRAKKYSQAIDL--YSQAIELNSQ 46 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~--y~~al~~~p~ 46 (485)
+.++.+|..++.+|++++|++. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666666666666666 3355555543
No 398
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=2.6 Score=42.06 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHH
Q 011465 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM----GKFKEA 101 (485)
Q Consensus 28 g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~--~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA 101 (485)
.-.++-+.+...+++.+|+...+|+.+..++.+.+. +..-++.++++++.||.+-.+|...-.+.... ....+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 356677888999999999999999999999988774 68889999999999999988877654444433 236788
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011465 102 LKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
+++..+++..++.|-.+|.+...++..+
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 8899999999999999999888777543
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.22 E-value=2.1 Score=32.42 Aligned_cols=61 Identities=20% Similarity=0.104 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR---GAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l---g~~~~~~g~~~eA~~~~~~al~ 110 (485)
.....|.-++...+.++|+..++++++..++.+..+..+ ..+|...|+|.+++++-.+=+.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788899999999999999988876655544 5778888999998877544433
No 400
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=90.92 E-value=0.41 Score=46.05 Aligned_cols=71 Identities=23% Similarity=0.185 Sum_probs=39.2
Q ss_pred ceeEecccCCCH----HHHHHHHHHcCCCCCCCCeEEccccc-CCCCChH------HHHHHHHhchhcCCCcEEEeccCC
Q 011465 223 HFTVCGDVHGQF----YDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNH 291 (485)
Q Consensus 223 ~~~v~GDihG~~----~dl~~il~~~~~~~~~~~~vflGD~v-drG~~s~------e~l~~l~~lk~~~p~~v~~lrGNH 291 (485)
+++++||.-... .++.+.+.........+-+|++||+| +-|..+. +.+.-++.. +....-++.+.|||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~GNH 80 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLGNH 80 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecCCc
Confidence 378899976531 23443333221112345699999987 5564221 222223221 11345688899999
Q ss_pred Ccc
Q 011465 292 ESK 294 (485)
Q Consensus 292 E~~ 294 (485)
|..
T Consensus 81 D~~ 83 (277)
T cd07378 81 DYS 83 (277)
T ss_pred ccC
Confidence 976
No 401
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.86 E-value=0.51 Score=30.36 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
.++..||.+....++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888888888888888875
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.83 E-value=1.6 Score=43.81 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=78.0
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHHHHH
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------------N------------SQN---AVYYANRAFAH 58 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------------~------------p~~---~~~~~~lg~~~ 58 (485)
...|-.++++.+++.++..+|+.+.|.+..++||-. + +.| -.+.+.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 346778899999999999999999999999998732 1 112 23455667778
Q ss_pred HHccCHHHHHHHHHHHHHhCCC-ChHHHHHH-HHHHHHcCCHHHHHHHHHHHHH
Q 011465 59 TKLEEYGSAIQDASKAIEIDPR-YPKGYYRR-GAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 59 ~~~g~~~eAl~~~~~al~~~p~-~~~~~~~l-g~~~~~~g~~~eA~~~~~~al~ 110 (485)
.+.|-+..|++.++-.+.+||. ++.+-... =..-.+.++|+--+..++....
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8899999999999999999999 76554443 3444466888777777765544
No 403
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.54 E-value=1.6 Score=41.74 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011465 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (485)
Q Consensus 30 ~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 109 (485)
+..=+....++++ .....++..++..+...|+++.++..+++.+..+|-+...|..+-.+|+..|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 6666666666554 34578899999999999999999999999999999999999999999999999999999999988
Q ss_pred Hh
Q 011465 110 KL 111 (485)
Q Consensus 110 ~~ 111 (485)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 75
No 404
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=90.09 E-value=0.44 Score=45.96 Aligned_cols=20 Identities=10% Similarity=0.391 Sum_probs=15.3
Q ss_pred HHHHHHH-CCCcEEEeecccc
Q 011465 398 TKRFLQD-NSLDLVVRSHEVK 417 (485)
Q Consensus 398 ~~~fl~~-~~~~~iir~h~~~ 417 (485)
..++++. .++++||-||+-.
T Consensus 209 ~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 209 AYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHhcCCCCcEEEeCCCcc
Confidence 4455655 7999999999964
No 405
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=12 Score=38.29 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-N--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~-~--~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~------- 81 (485)
..+..++.+|.....-+.++.|...|..|.++-.. + +.+..++|..|...++-+.--+..+ .+.|.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHH
Confidence 45778889999999999999999999999987543 2 4556789999999877554333332 234442
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011465 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
+.+++..|...+.++++.||...+++.++..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3467778888889999999999999999876
No 406
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.02 E-value=2.5 Score=42.80 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 011465 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDA 71 (485)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~ 71 (485)
|..++.+|+|.++.-+-.-..+++| ++.++..+|.|++...+|++|.+++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444555554444444444444 4444444455544444444444444
No 407
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.93 E-value=1.8 Score=41.49 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcc
Q 011465 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 143 (485)
+.+=+...+++++. ....++..++..+...|+++.+...+++.+..+|-+...|..+..++...+. ...|+..|+.
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 44444444554443 3566888899999999999999999999999999999999888888866665 5677776664
No 408
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.83 E-value=4 Score=37.66 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYS-------QAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~-------~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
....+..+..+|..|-.+++.+ +|++.|.+|++.... ...+.+.+|.+..+.|++++|+.++.+++.
T Consensus 114 ~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 114 PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3467888899999999888844 555666666654322 257788999999999999999999999997
Q ss_pred hCCCCh-HHHHHHH
Q 011465 77 IDPRYP-KGYYRRG 89 (485)
Q Consensus 77 ~~p~~~-~~~~~lg 89 (485)
....+. .....+|
T Consensus 194 ~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 194 SKKASKEPKLKDMA 207 (214)
T ss_pred CCCCCCcHHHHHHH
Confidence 533332 2444444
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.71 E-value=1.2 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 011465 84 GYYRRGAAYLAMGKFKEALKD--FQQVKKLSPN 114 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~--~~~al~~~p~ 114 (485)
.++.+|..+...|++++|+.. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344555555555555555555 3244444443
No 410
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.67 E-value=1.6 Score=46.91 Aligned_cols=118 Identities=32% Similarity=0.455 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCChHHH
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKL--EEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~lg~~~~~~--g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
..+......|+.++.++++..|.--|..++.+-|. .+....+.+.|+.++ +++.+++....-|+...|....++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 34556778899999999999999999999988774 356677788887765 689999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
...+.+|..+++.+-|++...-.....|++.++.....+.+..+
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999998888888999977666555544443
No 411
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.45 E-value=1.1 Score=46.03 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 55 g~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
|.-.+..+....|+..|.+++..-|.....+.+.+.++.+. |+.-.|+..+..|++++|....+++.++.++..+++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 33334455677899999999999999999999999888875 566778888999999999999999999999988887
Q ss_pred hhHHHhhcCCc
Q 011465 132 LKFEEAIAVPE 142 (485)
Q Consensus 132 ~~~~~A~~~~~ 142 (485)
+.+|+....
T Consensus 461 --~~eal~~~~ 469 (758)
T KOG1310|consen 461 --YLEALSCHW 469 (758)
T ss_pred --HHHhhhhHH
Confidence 577776554
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.43 E-value=1.6 Score=39.48 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHH
Q 011465 21 ANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLA 94 (485)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~----~~~~~~~lg~~~~~ 94 (485)
...++.+-.-++|.+.|-++-. .| +++...+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..
T Consensus 113 lYy~Wsr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3445566556778877776533 33 46888888886654 77899999999999998554 58899999999999
Q ss_pred cCCHHHHHH
Q 011465 95 MGKFKEALK 103 (485)
Q Consensus 95 ~g~~~eA~~ 103 (485)
+|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999999864
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.29 E-value=1.1 Score=42.90 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 33 A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
|..+|.+|+.+.|.+...|+.+|.++...|+.=+|+-+|-|++......+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997655568888888888777
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.23 E-value=7.8 Score=41.39 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
+....+++.+.|..+.....|++|.++|.+.- -.-++..|++.+.+|++- +.....-|++.+.+-.+|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHH
Confidence 44456778888888888888888888887642 123456677777666654 333344588888888888
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 011465 90 AAYLAMGKFKEALKDFQQ 107 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~ 107 (485)
.++...|.-++|.+.|-+
T Consensus 860 ~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHhhchHHHHHHHHHh
Confidence 888888888888887743
No 415
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.51 E-value=11 Score=37.50 Aligned_cols=51 Identities=14% Similarity=-0.029 Sum_probs=34.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 25 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
...|+.+.|..+-+++-+..|.-+.++...-......|+++.|++..+...
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 456777777777777777777777776666666666777776666555443
No 416
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=88.45 E-value=20 Score=32.99 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=114.5
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEccccc--CCCCChHHHHHH-HHhchhcCCCcEEEeccCCCccccccc
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILT-LFAFKCMCPSAIYLSRGNHESKSMNKI 299 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~v--drG~~s~e~l~~-l~~lk~~~p~~v~~lrGNHE~~~~~~~ 299 (485)
++..+.|+||..+.+.+++...+.. ..+.+++.||+. +.|+.-.-.... +-.++. ..-.|+.++||-+...+-..
T Consensus 5 kil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~~v~~~ 82 (226)
T COG2129 5 KILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPPEVIDV 82 (226)
T ss_pred eEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChHHHHHH
Confidence 5888999999999999988876533 345689999999 888743222221 333432 34789999999665433211
Q ss_pred cCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCC-C-----ChhhhhhccCC-CCCCCCCcccccc
Q 011465 300 YGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG-V-----KLSDIKTIDRF-CEPPEEGLMCELL 372 (485)
Q Consensus 300 ~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~-~-----~~~~i~~~~r~-~~~~~~~~~~~ll 372 (485)
....+..+. +=...+++-.||-=||. .|.. . +-++|.+.-+. .+...+..--=++
T Consensus 83 -------l~~~~~~v~----------~~v~~i~~~~~~G~Ggs-n~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~ 144 (226)
T COG2129 83 -------LKNAGVNVH----------GRVVEIGGYGFVGFGGS-NPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLT 144 (226)
T ss_pred -------HHhcccccc----------cceEEecCcEEEEeccc-CCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEe
Confidence 111111111 11123344444444776 3322 2 23444433222 1100000001112
Q ss_pred cCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 011465 373 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 452 (485)
Q Consensus 373 w~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~ 452 (485)
-+-|....-. .+-| -..-|..++.++.++.+-.+.|.||=-...|+.--- =||+-.|.-. ..-..|++.++
T Consensus 145 HaPP~gt~~d--~~~g-~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG----~TivVNPG~~--~~g~yA~i~l~ 215 (226)
T COG2129 145 HAPPYGTLLD--TPSG-YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIG----NTIVVNPGPL--GEGRYALIELE 215 (226)
T ss_pred cCCCCCcccc--CCCC-ccccchHHHHHHHHHhCCceEEEeeecccccccccC----CeEEECCCCc--cCceEEEEEec
Confidence 2223222111 1222 134688999999999999999999977667775321 3666666432 34567888883
Q ss_pred cCCCceeEEEEe
Q 011465 453 APTLKPNIVTFA 464 (485)
Q Consensus 453 ~~~~~~~~~~~~ 464 (485)
++ .++..+|.
T Consensus 216 -~~-~Vk~~~~~ 225 (226)
T COG2129 216 -KE-VVKLEQFS 225 (226)
T ss_pred -Cc-EEEEEEec
Confidence 32 55555653
No 417
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.28 E-value=0.87 Score=29.29 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
++..||.+-+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555555555555443
No 418
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=88.24 E-value=1.1 Score=45.65 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhch-hcC--CCcEEEeccCCCccccccc
Q 011465 250 ENPYLFNGDFVDRGSFSVEVILTLFAFK-CMC--PSAIYLSRGNHESKSMNKI 299 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e~l~~l~~lk-~~~--p~~v~~lrGNHE~~~~~~~ 299 (485)
.+.+|+-||+.|++.-|.+++..+...- .+. .--|+++.||||...-...
T Consensus 41 vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~ 93 (390)
T COG0420 41 VDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRLSE 93 (390)
T ss_pred CCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhcccc
Confidence 3679999999999988888887765432 222 3579999999998765433
No 419
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.24 E-value=23 Score=37.13 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred cCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------
Q 011465 28 KKYSQAIDLYSQAIEL------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------ 77 (485)
Q Consensus 28 g~~~~A~~~y~~al~~------------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------------------ 77 (485)
..|++|...|.-|... .|.+......+|.+...+|+.+-|....++++-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4567777777776654 4666788899999999999998888877777732
Q ss_pred ---CCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhhhHHHhhcC
Q 011465 78 ---DPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAV 140 (485)
Q Consensus 78 ---~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~ 140 (485)
.|.|... .+..-..+.+.|.+..|.++++-.++++|. ||-+...+-..+....+ +|+--+.+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar-eYqwiI~~ 400 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR-EYQWIIEL 400 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH-hHHHHHHH
Confidence 2334333 344456667789999999999999999998 88877766666644443 24433333
No 420
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.22 E-value=6.6 Score=47.55 Aligned_cols=118 Identities=17% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~------ 81 (485)
.....-++.|.+.|++.-..|.++.|-.+.-+|.+.. -+.++..+|..+++.|+-..|+..+++.++.+-.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 3456678899999999999999999999999998876 68899999999999999999999999999764221
Q ss_pred -----------hHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011465 82 -----------PKGYYRRGAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (485)
Q Consensus 82 -----------~~~~~~lg~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (485)
..+....+.-....+++ ++-++.|+.+.++.|...+.++.+|.-+.
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 12334444444445554 44678899999999988888888885543
No 421
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.20 E-value=0.61 Score=47.17 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+......+.+....|+|++|.+....+-..-.....+..-+-.....+|++++|....+-.+.-.-++++...-.+.
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 33445556678888999999999998777665544445555556677789999999999998888777777787776777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011465 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (485)
.-.++|-+++|+.++++.+.++|.....|.+.
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 77889999999999999999998765544433
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.14 E-value=5.5 Score=36.08 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhhhHHHhh
Q 011465 65 GSAIQDASKAIEIDP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN----DPDAAQKVKECEKAVKKLKFEEAI 138 (485)
Q Consensus 65 ~eAl~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~A~ 138 (485)
++|..-|-++-. .| +.++..+.+|..|. ..+.++|+..+.+++++.+. |++....++.++...++ +++|.
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~--~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN--YEQAY 198 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--hhhhh
Confidence 567666655432 33 35777777775554 78999999999999998654 47888889988876666 56664
No 423
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.01 E-value=20 Score=40.29 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
-+++..|-++|...++.+...+|++.|-+| +++..|...-.+..+.|.|++-+.++.-|-+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 456788999999999999999999999886 77888888888888999999888887766543
No 424
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.92 E-value=0.81 Score=26.50 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 011465 84 GYYRRGAAYLAMGKFKEALKDF 105 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~ 105 (485)
+.+.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 425
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.83 E-value=0.66 Score=26.87 Aligned_cols=22 Identities=14% Similarity=-0.242 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDA 71 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~ 71 (485)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 426
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.69 E-value=2.2 Score=36.51 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (485)
.......|...+..|++..|....+.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 444444555555555555555555555555555555555555555555543
No 427
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.68 E-value=13 Score=35.91 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHccCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---CC------
Q 011465 24 AFRAKKYSQAIDLYSQAIELN----SQN----AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---RY------ 81 (485)
Q Consensus 24 ~~~~g~~~~A~~~y~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~----~p---~~------ 81 (485)
..++|+.+.|..++.|+-... |+. +..+++.|......+ ++++|..++++|.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 322 466888888899999 999999999999987 22 11
Q ss_pred -hHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHHHHH
Q 011465 82 -PKGYYRRGAAYLAMGKFKE---ALKDFQQVKKLSPNDPDAAQKV 122 (485)
Q Consensus 82 -~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~~p~~~~~~~~l 122 (485)
...+..++.+|...+.++. |....+.+-...|+.+..+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2456778899998887654 4555555555567767665333
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.30 E-value=17 Score=35.52 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=71.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~------------------- 78 (485)
+..-....+..+.++-++.-..|++++|..+.+|..+|.- ..-...+|...+++|++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 4445666778888888999999999999999999988864 2334567777777776431
Q ss_pred ----CCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011465 79 ----PRYPK--GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 79 ----p~~~~--~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
..+.. .-.+++.|-.++|+..+|++.++...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11222 345789999999999999999998887766
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.04 E-value=10 Score=36.62 Aligned_cols=124 Identities=20% Similarity=0.143 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-hHHH
Q 011465 15 EELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGY 85 (485)
Q Consensus 15 ~~~~~lg~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~-~~~~ 85 (485)
.....++..+.. ..+.++|++.|+.+. ...++.+.+.+|..|.. ..+..+|..+|++|.+..-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 345555555543 336778888888543 45677888888888876 447888888888888774333 2347
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-h-hhhHHHhhcCCc
Q 011465 86 YRRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV-K-KLKFEEAIAVPE 142 (485)
Q Consensus 86 ~~lg~~~~~~g-------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~~~~~A~~~~~ 142 (485)
+.+|.+|..-. +...|...|.++-... ++.+...++.++..- + ..+..+|...+.
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~ 215 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK 215 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 77887777642 2236888888887765 677777777665321 1 123455555544
No 430
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=86.98 E-value=0.85 Score=44.29 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=38.8
Q ss_pred eeEecccCCCHHH--------------HHHHHHHcCCCCCCCCeEEcccccCCCCC-h-----HHHHHHHHhchhcCCCc
Q 011465 224 FTVCGDVHGQFYD--------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPSA 283 (485)
Q Consensus 224 ~~v~GDihG~~~d--------------l~~il~~~~~~~~~~~~vflGD~vdrG~~-s-----~e~l~~l~~lk~~~p~~ 283 (485)
++.+.|+||++.. +..+++..........++..||++...+. | ..++..+-++.. .
T Consensus 3 il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~----D 78 (288)
T cd07412 3 ILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV----D 78 (288)
T ss_pred EEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----e
Confidence 6777899987543 55555554333333457778999976654 2 234444444432 2
Q ss_pred EEEeccCCCcc
Q 011465 284 IYLSRGNHESK 294 (485)
Q Consensus 284 v~~lrGNHE~~ 294 (485)
+ +..||||..
T Consensus 79 a-~t~GNHefd 88 (288)
T cd07412 79 A-SAVGNHEFD 88 (288)
T ss_pred e-eeecccccc
Confidence 3 345999963
No 431
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.97 E-value=4.6 Score=42.57 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
...+-|.-.++..+|..|++.|...+..-|. .+.....++.||..+.+.+.|.++++.|-+.+|.++-....+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445677788999999999999999987554 3567788999999999999999999999999999886655554
Q ss_pred HHH
Q 011465 124 ECE 126 (485)
Q Consensus 124 ~~~ 126 (485)
.+.
T Consensus 436 ~~~ 438 (872)
T KOG4814|consen 436 QSF 438 (872)
T ss_pred HHH
Confidence 443
No 432
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=86.78 E-value=0.76 Score=43.81 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=36.5
Q ss_pred eeEecccCCCHH----------HHHHHHHHcCCCCCCCCeEEcccccCCCCChH-----HHHHHHHhchhcCCCcEEEec
Q 011465 224 FTVCGDVHGQFY----------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 224 ~~v~GDihG~~~----------dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~-----e~l~~l~~lk~~~p~~v~~lr 288 (485)
++.+.|+||++. .+..+++..... .+..++..||.++..+.+. .++..+-.+ - -.+ +..
T Consensus 3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~---g-~d~-~~~ 76 (257)
T cd07408 3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV---G-YDA-VTP 76 (257)
T ss_pred EEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc---C-CcE-Ecc
Confidence 677889999753 344555544322 2345777899998765432 222222222 2 233 345
Q ss_pred cCCCc
Q 011465 289 GNHES 293 (485)
Q Consensus 289 GNHE~ 293 (485)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99996
No 433
>PLN02533 probable purple acid phosphatase
Probab=86.71 E-value=0.94 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCcEEEeecccccc
Q 011465 395 ADVTKRFLQDNSLDLVVRSHEVKDE 419 (485)
Q Consensus 395 ~~~~~~fl~~~~~~~iir~h~~~~~ 419 (485)
.+.++.++.++++++++-||.-.-+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccc
Confidence 4578899999999999999997533
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=85.97 E-value=9 Score=31.59 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-------NSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-------~p~~~----~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
+-.+..++..+...|+|++++..-.++|.. +.+.. .+.+++|.++..+|..++|+..|+.+.+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445667788999999999999999998864 34433 44568999999999999999999998764
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.92 E-value=5.8 Score=45.29 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=88.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--- 77 (485)
.+|+.+..+..++..+...+++++|+..-.+|.-+ .|+....+.+++...+..++...|+..+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 35778899999999999999999999987776533 3566788999999999999999999999998875
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011465 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 78 -----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
.|.-.....+++.++..+++++.|+.+.+.|++..
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45556667889999999999999999999999864
No 436
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.81 E-value=10 Score=41.42 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH----------HhCCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAI----------EIDPR----------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al----------~~~p~----------~~~~~~~lg~~~~~~g~~~eA~~~~~~ 107 (485)
-..|++.|.-+...++.+.|+++|+++- .-+|. +...|.-.|.-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3568889999999999999999999842 22332 334555578888889999999999988
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 108 VKKL---------------------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 108 al~~---------------------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|-.. ...|..+.+.+++.|...++ +.+|+..+.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--v~~Av~FfT 991 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--VVKAVKFFT 991 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--HHHHHHHHH
Confidence 7543 24566677888887754443 566665544
No 437
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.80 E-value=21 Score=31.66 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
+.-+..+-..+..++|+..|...-+-.-.. ..+.+..|.+..+.|+...|+.+|..+-
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 334444445555555555555544433222 2344445555555555555555555543
No 438
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.97 E-value=4.8 Score=41.69 Aligned_cols=101 Identities=10% Similarity=-0.019 Sum_probs=74.9
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011465 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...+|.+.++|+.+-..+..+ -+++..+.|++.+...|..+.+|.......+..++|+.....|.+.+..-= +...|.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHH
Confidence 356788899999999988888 999999999999999999999999999999999999999999999886422 234443
Q ss_pred H-HHHHHHHcCCHHHHHHHHHHHH
Q 011465 87 R-RGAAYLAMGKFKEALKDFQQVK 109 (485)
Q Consensus 87 ~-lg~~~~~~g~~~eA~~~~~~al 109 (485)
. +..+-...++...+.+..-+|.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHH
Confidence 2 3333344454444444333333
No 439
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=21 Score=36.74 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC---C--
Q 011465 13 RAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPR---Y-- 81 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g--~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~-~~~g~~~eAl~~~~~al~~~p~---~-- 81 (485)
-+.++..+|..+...+ +...++++++..+...|.+ +.....+|.++ ....+++.|..++++|..+-.. .
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3566777888888888 7888999988888777654 34455666654 4678899999999998876432 2
Q ss_pred --hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHhhhhHHHhhcCCccc
Q 011465 82 --PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQ----KVKECEKAVKKLKFEEAIAVPESE 144 (485)
Q Consensus 82 --~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~~~A~~~~~~~ 144 (485)
-.+...++.+|.... .+..|...+++|+++..+.|.... .++.+. .-+.++.-|++....+
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~--~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH--IIDKDFPSALELLAVG 153 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH--hhhccchhHHHHHhcc
Confidence 245667788888777 788888889999998887774332 333333 3334466676665543
No 440
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.74 E-value=37 Score=35.78 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=101.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHH
Q 011465 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRR 88 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-p~~~~~~~~l 88 (485)
.+.+...|......-...|+++...-.|++++--.......|...+......|+.+-|-..+.++.+.. |..+..+..-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 456677888888888999999999999999999888999999999999999999999988888888764 5667777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+..-...|+++.|...+++..+..|+...+-..........+.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence 8888899999999999999999888877765544444433333
No 441
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=84.38 E-value=5.5 Score=40.25 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred hHHHhhh------cHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhh---------------------hhhc
Q 011465 304 GEVRSKL------SETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSD---------------------IKTI 356 (485)
Q Consensus 304 ~e~~~~~------~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~---------------------i~~~ 356 (485)
.|+..+. ++.+-+..+=.|+.=.+-...+ .-|..||.||-....+..+ -...
T Consensus 376 ~evi~kl~~sf~~sekL~rHv~fl~~kG~myL~yN-gNLL~HgCiPl~enG~f~~~~i~~~~y~Gr~Lld~fd~~vRka~ 454 (648)
T COG3855 376 EEVIDKLLASFQNSEKLQRHVQFLFSKGSMYLKYN-GNLLIHGCIPLDENGEFKEFTIEDEAYKGRELLDKFDQLVRKAF 454 (648)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhcCcEEEEec-CceEEEeeeecCCCCceeEEEEcCCccccHHHHHHHHHHHHHHh
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccC-------------------------------HHHHHHHHHHC
Q 011465 357 DRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFG-------------------------------ADVTKRFLQDN 405 (485)
Q Consensus 357 ~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg-------------------------------~~~~~~fl~~~ 405 (485)
..+.....+++.+|++| --..-..+..|| ++.+.+.|+..
T Consensus 455 ~~~entk~~~~a~D~iW---------YLWtG~~SsLFGK~~MtTFERYfI~dK~THkE~KnPYy~lrede~ic~kil~eF 525 (648)
T COG3855 455 AHPENTKVDKLATDLIW---------YLWTGEYSSLFGKRAMTTFERYFIDDKKTHKEKKNPYYKLREDEEICRKILEEF 525 (648)
T ss_pred cCcccCccchhhhceee---------eeecccccchhcchhhhHHHHHHhccchhhhhhcCchhhhcchHHHHHHHHHHh
Q ss_pred CCc----EEEeeccccccCcEEec---CCeEEEE
Q 011465 406 SLD----LVVRSHEVKDEGYEIEH---DGKLITV 432 (485)
Q Consensus 406 ~~~----~iir~h~~~~~G~~~~~---~~~~~tv 432 (485)
|++ .||.||+++.++=--.. |||+|-|
T Consensus 526 GLdpe~ghiINGHtPVke~~GE~PIKAngKliVI 559 (648)
T COG3855 526 GLDPEGGHIINGHTPVKEKNGENPIKANGKLIVI 559 (648)
T ss_pred CCCcccCceecCCCcccccCCCCCccCCCeEEEE
No 442
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.49 E-value=47 Score=35.99 Aligned_cols=112 Identities=21% Similarity=0.099 Sum_probs=80.2
Q ss_pred CCchhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011465 8 NSSVSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~y~~al~~~p~--~~----~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
.+...++.+.+.+|.+++ ...+++.|..++.+++.+... .. .+.+.++.++.+.+... |+..++++++.-..
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 345667889999999998 778999999999999888743 22 23446788888888777 99999999986444
Q ss_pred ---C-hHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 011465 81 ---Y-PKGYYRRG--AAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ 120 (485)
Q Consensus 81 ---~-~~~~~~lg--~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~ 120 (485)
. ....+++- ..+...+++..|++.++...... ..++.+..
T Consensus 132 ~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 132 YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 1 22222332 22223379999999999998876 45655433
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.29 E-value=38 Score=37.48 Aligned_cols=100 Identities=18% Similarity=0.046 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-- 81 (485)
.+......|.....+.++.+|.....++...-+. .+...-..|.+....|+.++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455567788888999999999998887765433 23555567888899999999999999999987765
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011465 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
..++..+|.+..-.|++++|..+.+++.+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999998874
No 444
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=83.17 E-value=1.4 Score=40.44 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=41.8
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH-------------------------HHHHHhch
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV-------------------------ILTLFAFK 277 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~-------------------------l~~l~~lk 277 (485)
.+.++.|.||+++-+.++.+.+.-. ..+.++|+||++--+..+-|- +.-++..-
T Consensus 7 kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 7 KILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 5889999999999999988764222 345799999998544333332 22333333
Q ss_pred hcCCCcEEEeccCCCcccc
Q 011465 278 CMCPSAIYLSRGNHESKSM 296 (485)
Q Consensus 278 ~~~p~~v~~lrGNHE~~~~ 296 (485)
-..+--++.++|||+....
T Consensus 86 ~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 86 GELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HCC-SEEEEE--TTS-SHH
T ss_pred HhcCCcEEEecCCCCchHH
Confidence 4456778889999998543
No 445
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=82.87 E-value=2.4 Score=40.59 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=10.1
Q ss_pred CCCcEEEeeccc
Q 011465 405 NSLDLVVRSHEV 416 (485)
Q Consensus 405 ~~~~~iir~h~~ 416 (485)
-++++||-||+-
T Consensus 206 ~~iDlilgGH~H 217 (264)
T cd07411 206 PGIDVILSGHTH 217 (264)
T ss_pred CCCcEEEeCccc
Confidence 579999999975
No 446
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=82.57 E-value=5.5 Score=45.49 Aligned_cols=128 Identities=21% Similarity=0.213 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE--------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------ 77 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~--------~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------ 77 (485)
..+....+.|......+.+++|.+ ..+++. +.|..+..+..++..+..++++++|+..-.+|.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 677778888888999999998888 444443 36788899999999999999999999998887744
Q ss_pred --CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011465 78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 78 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.|+....+.+++......++...|+..+.++..+. |.-.....++..++. +-.+++.|+.+.+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~--~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL--GVEEADTALRYLE 1081 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh--hHHHHHHHHHHHH
Confidence 34567788899999999999999999999998763 333334456666553 3334777777776
No 447
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.53 E-value=5.5 Score=38.08 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011465 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (485)
Q Consensus 54 lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 108 (485)
.+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--+|.+.|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3555666777777777777777777777777777777777777766666666544
No 448
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.57 E-value=9.2 Score=28.73 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
+.+..+...|..+-+.|++++|+.+|+++++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45666777888888888888888887777653
No 449
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.39 E-value=3.9 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011465 28 KKYSQAIDLYSQAIELNSQNAVYYANRAF 56 (485)
Q Consensus 28 g~~~~A~~~y~~al~~~p~~~~~~~~lg~ 56 (485)
|+.+.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666665543
No 450
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.30 E-value=13 Score=34.26 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 56 ~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
..+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3466788899999999999999999999998899999999999999999999999999764
No 451
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=81.15 E-value=2.9 Score=40.44 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=13.4
Q ss_pred HHHHHH-CCCcEEEeecccc
Q 011465 399 KRFLQD-NSLDLVVRSHEVK 417 (485)
Q Consensus 399 ~~fl~~-~~~~~iir~h~~~ 417 (485)
.+++++ -++++||-||+-.
T Consensus 198 ~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 198 KEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred HHHHHcCCCCcEEEeCCcCc
Confidence 344444 5899999999754
No 452
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.56 E-value=15 Score=39.57 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-----------HHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011465 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-----------RAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~-----------lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
..+.|-.-|..+-+..++++|+++|++.=..-..-..+.+. -|.-+.+.|+++.|+..|-+|--+
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~---- 735 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL---- 735 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH----
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccc-cccccccccccccccC
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE-RHSVADSIDYQSIEVE 160 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~-~~~~a~~~~~~~l~~~ 160 (485)
...-.+-....+|.+|+..++..-........ +-.++.-| ...++|+.|..++..+ ....++.+|.++
T Consensus 736 ----~kaieaai~akew~kai~ildniqdqk~~s~y-y~~iadhy--an~~dfe~ae~lf~e~~~~~dai~my~k~---- 804 (1636)
T KOG3616|consen 736 ----IKAIEAAIGAKEWKKAISILDNIQDQKTASGY-YGEIADHY--ANKGDFEIAEELFTEADLFKDAIDMYGKA---- 804 (1636)
T ss_pred ----HHHHHHHhhhhhhhhhHhHHHHhhhhcccccc-chHHHHHh--ccchhHHHHHHHHHhcchhHHHHHHHhcc----
Q ss_pred CCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHH--HHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHH
Q 011465 161 PQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQI--VLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLL 238 (485)
Q Consensus 161 ~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~l--l~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~ 238 (485)
-.-.+.-++.+.+.........++.+. +++..+.-..+.-.+.+..|.. .+-+.|-||..+|++
T Consensus 805 ------------~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~--aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 805 ------------GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK--AIQMYDKHGLDDDMI 870 (1636)
T ss_pred ------------ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH--HHHHHHhhCcchHHH
Q ss_pred HHHHH
Q 011465 239 NIFEL 243 (485)
Q Consensus 239 ~il~~ 243 (485)
++.++
T Consensus 871 rlv~k 875 (1636)
T KOG3616|consen 871 RLVEK 875 (1636)
T ss_pred HHHHH
No 453
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=80.49 E-value=12 Score=36.56 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011465 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 29 ~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
+|..-..+|+......| ++..-.|++.+.....-.+.++...+..... -..+-..+-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 56666666666655555 4666777888877777777777777665544 12344556678999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 011465 107 QVKKLSPNDPDAAQKVKE 124 (485)
Q Consensus 107 ~al~~~p~~~~~~~~l~~ 124 (485)
+++.+.++..+..+....
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999988876655543
No 454
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=44 Score=33.73 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=82.2
Q ss_pred HccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011465 26 RAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTK------------LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 26 ~~g~~-~~A~~~y~~al~~~p~~~~~~~~lg~~~~~------------~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
..|.+ .++++.-.+.+..+|+...+|..+-.++.. +.-.++-+.....+++.+|+.-.+|+.+..++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44555 458888888899999998888765544432 22356668888899999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011465 93 LAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 93 ~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
.+.+ ++..-+..++++++.+|.+-.+|.+...+.....
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 8765 4688999999999999999888887776654433
No 455
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=80.11 E-value=3.7 Score=36.22 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=53.5
Q ss_pred ceeEecccC-CCHHHHHHHHHHcCCCCCCCCeEEccccc--CCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccc
Q 011465 223 HFTVCGDVH-GQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI 299 (485)
Q Consensus 223 ~~~v~GDih-G~~~dl~~il~~~~~~~~~~~~vflGD~v--drG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~ 299 (485)
+..|+|+-- |.-+...+-.. +.....+..+.-||+- =|=+...+=+.+|=+| |+.=+++||||+...-.
T Consensus 18 pM~vFGe~W~gh~ekI~k~W~--~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~s-- 89 (230)
T COG1768 18 PMEVFGEPWSGHHEKIKKHWR--SKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWSS-- 89 (230)
T ss_pred ceeecCCcccCchHHHHHHHH--hcCChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccch--
Confidence 466777643 33333333333 2233345577779986 3445556666666555 89999999999975432
Q ss_pred cCchhHHHhhhcHHHHHHHHHHhcccccc
Q 011465 300 YGFEGEVRSKLSETFVELFAEVFCCLPLA 328 (485)
Q Consensus 300 ~~f~~e~~~~~~~~~~~~~~~~f~~lPl~ 328 (485)
...+...+... .-..++.|..+-+|
T Consensus 90 ---~skl~n~lp~~-l~~~n~~f~l~n~a 114 (230)
T COG1768 90 ---ISKLNNALPPI-LFYLNNGFELLNYA 114 (230)
T ss_pred ---HHHHHhhcCch-HhhhccceeEeeEE
Confidence 22333333333 33456667666643
No 456
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.53 E-value=52 Score=30.41 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 011465 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~ 82 (485)
...+.+.+..++|+...+.-++..|.+......+-..+.-.|++++|+.-++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45677889999999999999999999999999999999999999999999999999999863
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.28 E-value=14 Score=37.00 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC-ChH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PR-YPK 83 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-------p~-~~~ 83 (485)
.++..+|..|...|+.+.|++.|.++-..... ....|.++-.+-..+|+|.....+-.+|...- +. .+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34455555555555555555555553322221 12334444444444555544444444443320 00 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 011465 84 GYYRRGAAYLAMGKFKEALKDF 105 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~ 105 (485)
..+.-|.+...+++|..|.++|
T Consensus 231 l~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555544
No 458
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=26 Score=35.16 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC--CChH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----N-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDP--RYPK 83 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~--~~p--~~~~ 83 (485)
+..|+.+...|-..++...-...+...++. + ...+...+.+-.+|+..+.|++|-....++.- .+. +.+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 456677777777777755544444444332 1 12345566677888889999999877776652 111 2355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
..+.+|.+..-+++|..|.+++-+|+...|++.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 677899999999999999999999999999843
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.98 E-value=22 Score=33.60 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCH
Q 011465 31 SQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~ 98 (485)
...++++++|++.... .......+|..|+..|++++|++.++.+...-.. .......+..|+..+|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 3456666666654322 1344556777777788888888877777544221 134555666777777777
Q ss_pred HHHHHHH
Q 011465 99 KEALKDF 105 (485)
Q Consensus 99 ~eA~~~~ 105 (485)
++.+...
T Consensus 235 ~~~l~~~ 241 (247)
T PF11817_consen 235 EDYLTTS 241 (247)
T ss_pred HHHHHHH
Confidence 7766654
No 460
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.82 E-value=7.5 Score=37.22 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
.+...+..|...|.+.+|+++-++++.++|-+...+..+-..+..+|+--.|...|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344567888999999999999999999999999999999999999999888888877643
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.60 E-value=7.4 Score=33.29 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.......+......|++..|......++..+|++.++....+.++..++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777777777777777777777766665
No 462
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.63 E-value=16 Score=37.73 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 011465 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (485)
..+..+.++|-++.|++. -.++...+.|| .+.|+.+.|.+..+ .-+++..|.+||.....+|++
T Consensus 300 ~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQF--------VTDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHTT-HHHHHHH--------SS-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHCCCHHHHHhh--------cCChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCH
Confidence 344444555555555543 23455666555 45677776655542 334677999999999999999
Q ss_pred HHHHHHHHHH
Q 011465 99 KEALKDFQQV 108 (485)
Q Consensus 99 ~eA~~~~~~a 108 (485)
+-|.++|+++
T Consensus 364 ~lAe~c~~k~ 373 (443)
T PF04053_consen 364 ELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999999876
No 463
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=77.57 E-value=26 Score=36.61 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 38 SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 38 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
++-++.+|.+..+|+.|-.-+... .++++.+.|++.+...|..+.+|...........+|+.-.+.|.++|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667899999999999998877655 9999999999999999999999999999999999999999999999864
No 464
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=77.34 E-value=5.9 Score=38.46 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=40.7
Q ss_pred eEecccCCC--HHHHHHHHHHcCC-CCCCCCeEEcccccCCCCChH--H------HHHHHHhchhcCC-CcEEEeccCCC
Q 011465 225 TVCGDVHGQ--FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHE 292 (485)
Q Consensus 225 ~v~GDihG~--~~dl~~il~~~~~-~~~~~~~vflGD~vdrG~~s~--e------~l~~l~~lk~~~p-~~v~~lrGNHE 292 (485)
.-.|+.... ...+..+++.... .+..+.+|+.||+|+.+.... + .-.+.-.++-.+| --|+...||||
T Consensus 41 ~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 41 GPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 344555432 2344445544321 134567999999998875421 1 1222223443333 46888999999
Q ss_pred ccccc
Q 011465 293 SKSMN 297 (485)
Q Consensus 293 ~~~~~ 297 (485)
....+
T Consensus 121 ~~p~~ 125 (296)
T cd00842 121 SYPVN 125 (296)
T ss_pred CCccc
Confidence 86554
No 465
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.52 E-value=1.9 Score=42.19 Aligned_cols=82 Identities=17% Similarity=0.044 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
....+.+.+-.+.+.+..|+..-..+++.++....+++.++..+..+.++++|++.++.+....|++....-.+..+-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 44556788888999999999998889999999999999999999999999999999999999999987766655544443
Q ss_pred cC
Q 011465 95 MG 96 (485)
Q Consensus 95 ~g 96 (485)
..
T Consensus 356 ~~ 357 (372)
T KOG0546|consen 356 KK 357 (372)
T ss_pred HH
Confidence 33
No 466
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.02 E-value=1.1e+02 Score=37.91 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011465 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
.-...|.+.|++....|+++-|-.+.-+|.+.. -+.++...|..+-..|+...|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999988876 57899999999999999999999999999764
No 467
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.89 E-value=15 Score=36.96 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=60.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC--------CCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011465 55 AFAHTKLEEYGSAIQDASKAIEID--------PRY----------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 55 g~~~~~~g~~~eAl~~~~~al~~~--------p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
|...++++.|..|..-|+.|+++- |.. ...--.+..||.++++.+-|+..-.+.+-++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444556666666666666666552 111 12344689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHhh
Q 011465 117 DAAQKVKECEKAVKKLKFEEAI 138 (485)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~A~ 138 (485)
.-+...+.|...+.+ |.+|.
T Consensus 263 rnHLrqAavfR~LeR--y~eAa 282 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER--YSEAA 282 (569)
T ss_pred hHHHHHHHHHHHHHH--HHHHH
Confidence 989899999888877 44443
No 468
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.85 E-value=4.4 Score=41.06 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEI---------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+...|.+++.-+|+|..|++.++.. ++ -+.....++..|.+|..+++|.+|++.|...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888899999999887652 22 2234567899999999999999999999988753
No 469
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.68 E-value=8.5 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011465 97 KFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 97 ~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
+.+.|...|++++...|.++..|....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455566666666666666666555443
No 470
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.65 E-value=55 Score=33.12 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH--HHHHccCHHHHHHHHHHHHHh
Q 011465 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAF--AHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~--~~~~~lg~--~~~~~g~~~eAl~~~~~al~~ 77 (485)
.-....+..++..++|..|.+.+......-|... ..+..++. .++..-++++|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556778899999999999999999988533333 34445544 456778899999999998876
No 471
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=73.19 E-value=3.9 Score=40.01 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=46.1
Q ss_pred ceeEecccCCCHHHHHHHH---HHcCCCCCCCCeEEcccccC-CCC---ChHH---------HHHHHHhchhcCCCcEEE
Q 011465 223 HFTVCGDVHGQFYDLLNIF---ELNGLPSEENPYLFNGDFVD-RGS---FSVE---------VILTLFAFKCMCPSAIYL 286 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il---~~~~~~~~~~~~vflGD~vd-rG~---~s~e---------~l~~l~~lk~~~p~~v~~ 286 (485)
++.|-|-.||.++.+.+-+ ++.|- ...+-+++.||+=. |-. +|+. ...--++=.+..|=-.++
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~-tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGN-TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCC-CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 4789999999999988544 34332 33567899999852 221 1221 122223333667777778
Q ss_pred eccCCCcccc
Q 011465 287 SRGNHESKSM 296 (485)
Q Consensus 287 lrGNHE~~~~ 296 (485)
+=||||.++-
T Consensus 81 IGGNHEAsny 90 (456)
T KOG2863|consen 81 IGGNHEASNY 90 (456)
T ss_pred ecCchHHHHH
Confidence 8999998764
No 472
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.74 E-value=20 Score=33.82 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
......+|..|+..|++++|++.|+.+...... ...+...+..|+..+|+.++.+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345678999999999999999999999765322 25667788899999999998887765543
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.02 E-value=20 Score=36.47 Aligned_cols=96 Identities=23% Similarity=0.227 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIELNS---------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p---------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+.+++.-.|||..|++.++. ++++. -+...++..|.+|+.+++|.+|+..+...+-.--.....+...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3455778889999999998765 23322 2356788999999999999999999999875311111011111
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCCC
Q 011465 89 GAAYL-AMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 89 g~~~~-~~g~~~eA~~~~~~al~~~p~ 114 (485)
..-+- -.+..++....+.-++.+.|.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11111 123445555566666667775
No 474
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=71.86 E-value=32 Score=39.00 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011465 15 EELKALANEAFRA-------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 15 ~~~~~lg~~~~~~-------g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
++.+..|.+...+ ..+++|+..|++. .-.|.-+.=|...|.+|..+|+++|-++++.-|+++-|..+..-..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 4555566555432 2466777777763 4457778889999999999999999999999999999988765443
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHH
Q 011465 88 RGAAYLAM-----GKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 88 lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
.-.+-+++ .+...|+...--++...|.....
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 33333332 23345666666777888876544
No 475
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.47 E-value=23 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011465 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+|++.+.+++...|+++........+...+.+
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 34444444555677777655555555444443
No 476
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.02 E-value=25 Score=29.18 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
.+..+|+..++.+++-.|+-.|++|+.+..+- .....++|..+...|+.+-.+.+++-|-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 35678888889999999999999888753221 1234566666666666666666665544
No 477
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.70 E-value=11 Score=27.55 Aligned_cols=32 Identities=44% Similarity=0.535 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
+.+-.+...|..+-..|++++|+++|.++++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34556667777777778888887777777653
No 478
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.51 E-value=30 Score=37.21 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (485)
..++.++|..+..+.++++|.++|.+.-.. -++..|++.+.+|++- +.....-|++......++....
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHH
Confidence 567888888888888888888888664332 3456667777666653 3334455888888888888887
Q ss_pred HHhhhhHHHhhcCCc
Q 011465 128 AVKKLKFEEAIAVPE 142 (485)
Q Consensus 128 ~~~~~~~~~A~~~~~ 142 (485)
..|.. ++|...+-
T Consensus 864 svGMC--~qAV~a~L 876 (1189)
T KOG2041|consen 864 SVGMC--DQAVEAYL 876 (1189)
T ss_pred hhchH--HHHHHHHH
Confidence 77764 66666554
No 479
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=70.49 E-value=8.4 Score=36.64 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcCCCcEEEeccCCCc
Q 011465 231 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 231 hG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
.|.+.-+..+++..........++..||+++.++.+ ..++..+-.+. . -+...||||.
T Consensus 20 ~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~---~--d~~~~GNHef 82 (257)
T cd07406 20 VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG---V--DLACFGNHEF 82 (257)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC---C--cEEeeccccc
Confidence 455677777777654332233577789999877532 34444444442 2 2445799996
No 480
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=70.18 E-value=6.3 Score=46.18 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=36.9
Q ss_pred ceeEecccCCCHHHH---HHHHHHcCCCCCCCCeEE-cccccCCCCChH-----HHHHHHHhchhcCCCcEEEeccCCCc
Q 011465 223 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLF-NGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 223 ~~~v~GDihG~~~dl---~~il~~~~~~~~~~~~vf-lGD~vdrG~~s~-----e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
.++.+.|+||++..+ ..+++...-.. .+.+++ .||+++..+.+. .++..+-.+. --++..||||.
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEEN-PNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhC-CCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 578899999986433 33444322111 223433 799998776542 3344443332 22346799997
No 481
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.05 E-value=11 Score=28.43 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
..+..+...|..+-+.|+|++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777788888888888888888887764
No 482
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.42 E-value=79 Score=33.75 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011465 15 EELKALANEAF---RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 15 ~~~~~lg~~~~---~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
+.+..+|..+. ++...++|....+.-+--....+......|..+-..++.++|-++|++.+..+|+ .+++..+.-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 83 (578)
T PRK15490 6 EKLAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARR 83 (578)
T ss_pred HHHHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHH
Confidence 34455565544 4445666666666554444556777888888899999999999999999999998 688899999
Q ss_pred HHHcCCHHHHHHHHH
Q 011465 92 YLAMGKFKEALKDFQ 106 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~ 106 (485)
+.+.|-...|...++
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 84 LYNTGLAKDAQLILK 98 (578)
T ss_pred HHhhhhhhHHHHHHH
Confidence 999999999998887
No 483
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=69.13 E-value=45 Score=25.17 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
..+..+...|...-..|+|++|+.+|.++|+.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566777888888888888888888877763
No 484
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.08 E-value=53 Score=34.29 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 011465 50 YYANRAFAHTKLEEYGSAIQDASKAIEI---DPR----YPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPND 115 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~ 115 (485)
-+..+|.++..+|+.+.|..++..+++. ... .|.+++.+|..+..++. ..+|.+++.+|-....+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 3567899999999999999999999843 122 37899999999999999 999999999998876544
No 485
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.79 E-value=21 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011465 86 YRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
+.+|.+|..+|+.+.|.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666667777777666666663
No 486
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.60 E-value=11 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 011465 18 KALANEAFRAKKYSQAIDLYSQAIE 42 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~ 42 (485)
+.+|..|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666653
No 487
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.54 E-value=65 Score=34.89 Aligned_cols=83 Identities=19% Similarity=0.097 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhC-C---CCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHcCCHH
Q 011465 31 SQAIDLYSQAIELN-S---QNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPR--YP----KGYYRRGAAYLAMGKFK 99 (485)
Q Consensus 31 ~~A~~~y~~al~~~-p---~~~~~~~~lg~~~~-~~g~~~eAl~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~ 99 (485)
..|+.+++-+++.. + ..+.++..+|.+++ ...++++|..++++++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566666666421 1 13677889999988 788999999999999887643 22 34556788888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 011465 100 EALKDFQQVKKLSPN 114 (485)
Q Consensus 100 eA~~~~~~al~~~p~ 114 (485)
|...++++++...+
T Consensus 118 -a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 118 -ALKNLDKAIEDSET 131 (608)
T ss_pred -HHHHHHHHHHHHhc
Confidence 99999999987655
No 488
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.13 E-value=1.5e+02 Score=31.50 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCCHHH---HHHHHHHHHHccC
Q 011465 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------------------NSQNAVY---YANRAFAHTKLEE 63 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~---------------------~p~~~~~---~~~lg~~~~~~g~ 63 (485)
.++|=..+.+.++|.+.-.+||.+-|..+.+++|=. .|.+-.. .+..-..+.+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345888999999999999999999988888887731 1222222 2233344557889
Q ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 011465 64 YGSAIQDASKAIEIDPR-YPKGYYRRGAAYL-AMGKFKEALKDFQQV 108 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~eA~~~~~~a 108 (485)
+..|.++++-.+.++|. ++.+-..+-..|. +..+|+--+..++..
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999998 7766554444443 345555555544433
No 489
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=65.58 E-value=32 Score=27.80 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011465 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT 59 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~ 59 (485)
+......|...+..||++.|.+...++-+..+.....+..-|.+..
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~ 104 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQ 104 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555554443333333333333333
No 490
>PF12854 PPR_1: PPR repeat
Probab=65.05 E-value=17 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.002 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHH
Q 011465 48 AVYYANRAFAHTKLEEYGSAIQDAS 72 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~ 72 (485)
...|..+-..|.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444555555555555555555544
No 491
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.78 E-value=2e+02 Score=30.63 Aligned_cols=116 Identities=9% Similarity=-0.105 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----hHH
Q 011465 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY----PKG 84 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p--~~----~~~ 84 (485)
+..+......|..--..|++..|...|++.....|....+-...+....++|..+.+....+......+ .+ ...
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 444555666666677778888888888888877788777777777777778887777642111111111 11 233
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011465 85 YYRRGA-AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 85 ~~~lg~-~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
+...+. .+.-.++.+.|...+.+++...|.+...+..+....
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 334443 233457778888888888888888877666555444
No 492
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=64.67 E-value=15 Score=35.17 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=46.2
Q ss_pred ceeEecccCCC--HHHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011465 223 HFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~--~~dl~~il~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++..+||+=|+ ..-+...+.........+-.|..||...-| --+-++...|..+-+ .++-+ |||+...
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~Dk 72 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWFQ 72 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhccC
Confidence 47899999998 455555665544444445566689999766 356777777776643 45554 9999753
No 493
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=64.10 E-value=10 Score=36.67 Aligned_cols=19 Identities=5% Similarity=-0.102 Sum_probs=12.4
Q ss_pred HHHHHHC-CCc-EEEeecccc
Q 011465 399 KRFLQDN-SLD-LVVRSHEVK 417 (485)
Q Consensus 399 ~~fl~~~-~~~-~iir~h~~~ 417 (485)
+.+.+.. ++. .||-||+-.
T Consensus 210 ~~la~~~~~id~~Ii~GHsH~ 230 (282)
T cd07407 210 DAIRKIFPDTPIQFLGGHSHV 230 (282)
T ss_pred HHHHHhCCCCCEEEEeCCccc
Confidence 3444443 577 689999864
No 494
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=64.04 E-value=24 Score=31.42 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=66.4
Q ss_pred CCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCch----------------hHHHhhhcHHH
Q 011465 251 NPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE----------------GEVRSKLSETF 314 (485)
Q Consensus 251 ~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~----------------~e~~~~~~~~~ 314 (485)
..+||+|. |-|.-|++.+|-+|+..|-.+.++ .|+-|+|..+..-.|. .|+.+.|-..+
T Consensus 40 ~~lVvlGS----GGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLGS----GGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEcC----CCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 35888874 889999999999999888777777 6999998887654443 13333344567
Q ss_pred HHHHHHHhccccccceeCCcEEEEeC-cc
Q 011465 315 VELFAEVFCCLPLAHVLNQKVFVVHG-GL 342 (485)
Q Consensus 315 ~~~~~~~f~~lPl~~~i~~~~~~vHg-Gi 342 (485)
|..+.......++...+--+++.+-| |-
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGT 143 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGT 143 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCc
Confidence 88888888888998888888888887 54
No 495
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.95 E-value=59 Score=33.66 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=44.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 011465 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 101 (485)
....+.|+.+.|.+..++ .+++..|..||...+..|+++-|.++|+++-.. -.|..+|...|+-+.=
T Consensus 326 eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHHH
T ss_pred HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHHH
Confidence 344566777777665332 357888999999999999999998888775432 3344555555555443
Q ss_pred HHHHH
Q 011465 102 LKDFQ 106 (485)
Q Consensus 102 ~~~~~ 106 (485)
.+..+
T Consensus 393 ~kl~~ 397 (443)
T PF04053_consen 393 SKLAK 397 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 496
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.83 E-value=17 Score=27.40 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011465 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
+.+..+...|...-..|+|++|+++|..|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 35556666777777777888888888777764
No 497
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.75 E-value=18 Score=36.81 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=50.2
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCC-CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCC
Q 011465 223 HFTVCGDVHGQFYDLLNIFELNGLPSE-ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNH 291 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~-~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNH 291 (485)
++.|+||..|+++.|.+-.+......+ =+.++.+|++.+--..+-|++.+...-+ ..|--++++-+|-
T Consensus 7 kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~-~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 7 KILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTK-KVPIPTYFLGDNA 75 (528)
T ss_pred eEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCc-cCceeEEEecCCC
Confidence 599999999999999987766544332 2458889999987667788887765544 4566777766654
No 498
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.56 E-value=1.4e+02 Score=28.47 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHh-----
Q 011465 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYG-SAIQDASKAIEI----- 77 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g~~~-eAl~~~~~al~~----- 77 (485)
...+..+.++.=|..+++.|++.-|.++-.-.++. .+.+.....+++.++...+.-+ +-.+..++|++-
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~ 84 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGS 84 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCC
Confidence 34566778888889999999999887775554443 3455666677887777665432 233333444432
Q ss_pred -CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011465 78 -DPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 78 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
.-.++..+..+|..+.+.|++.+|..+|-
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 22468899999999999999999988873
No 499
>PF12854 PPR_1: PPR repeat
Probab=60.42 E-value=23 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011465 81 YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~~ 107 (485)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 567788899999999999999999875
No 500
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.37 E-value=1.5e+02 Score=33.17 Aligned_cols=111 Identities=17% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011465 1 MPNMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
++.-.........++..-..|.+....++.++|++..+.++..-|.+ ..++..+|.+..-.|++++|+.+..++.
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Q ss_pred Hh----CCCChHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHh
Q 011465 76 EI----DPRYPKGYYRR--GAAYLAMG--KFKEALKDFQQVKKL 111 (485)
Q Consensus 76 ~~----~p~~~~~~~~l--g~~~~~~g--~~~eA~~~~~~al~~ 111 (485)
+. +--.-..|..+ +.++..+| .+++....|...-+.
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Done!