Query 011468
Match_columns 485
No_of_seqs 297 out of 1691
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.3E-85 2.8E-90 667.6 22.0 309 24-348 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.9E-43 8.5E-48 340.0 23.4 254 18-340 40-305 (305)
3 smart00768 X8 Possibly involve 99.9 2.3E-27 4.9E-32 197.7 7.6 83 367-449 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 1.9E-21 4.1E-26 159.4 5.9 70 367-436 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 98.9 1.8E-07 4E-12 96.4 20.9 242 38-346 26-329 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.8 9.3E-08 2E-12 96.9 14.5 158 24-209 30-217 (314)
7 COG3867 Arabinogalactan endo-1 98.3 8E-06 1.7E-10 81.9 13.3 208 38-296 65-328 (403)
8 PRK10150 beta-D-glucuronidase; 97.9 0.0012 2.6E-08 73.6 20.9 257 23-346 294-585 (604)
9 PF00150 Cellulase: Cellulase 97.8 0.0022 4.8E-08 63.2 18.7 132 22-160 9-172 (281)
10 smart00633 Glyco_10 Glycosyl h 97.3 0.019 4.1E-07 57.1 18.0 79 249-345 171-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.2 0.019 4.1E-07 56.8 16.3 169 112-342 64-232 (239)
12 TIGR03356 BGL beta-galactosida 94.2 9.5 0.00021 41.1 22.2 41 39-79 57-116 (427)
13 PF02836 Glyco_hydro_2_C: Glyc 89.3 4.4 9.6E-05 41.0 11.7 96 23-123 17-132 (298)
14 cd02875 GH18_chitobiase Chitob 87.3 11 0.00023 39.7 13.2 102 49-159 55-157 (358)
15 PLN02814 beta-glucosidase 86.7 56 0.0012 36.1 19.9 45 39-83 80-143 (504)
16 PF00232 Glyco_hydro_1: Glycos 77.5 1 2.3E-05 48.7 1.2 275 39-339 61-430 (455)
17 PF02449 Glyco_hydro_42: Beta- 75.9 9.6 0.00021 40.0 7.9 40 39-78 13-68 (374)
18 PRK09936 hypothetical protein; 74.0 25 0.00055 36.0 9.8 57 24-80 22-95 (296)
19 COG4782 Uncharacterized protei 66.7 19 0.00041 38.1 7.3 57 238-297 125-187 (377)
20 cd02872 GH18_chitolectin_chito 65.6 41 0.00089 34.9 9.8 77 68-150 68-150 (362)
21 PF03662 Glyco_hydro_79n: Glyc 63.6 16 0.00034 38.1 6.0 85 64-149 116-202 (319)
22 PF00925 GTP_cyclohydro2: GTP 60.8 11 0.00023 35.4 3.9 38 41-78 131-168 (169)
23 cd06545 GH18_3CO4_chitinase Th 57.5 87 0.0019 30.9 10.0 81 61-152 50-133 (253)
24 cd02874 GH18_CFLE_spore_hydrol 57.1 1.1E+02 0.0025 30.9 11.1 84 59-152 47-138 (313)
25 PF02055 Glyco_hydro_30: O-Gly 55.2 3E+02 0.0065 30.4 14.5 63 93-159 207-277 (496)
26 smart00481 POLIIIAc DNA polyme 53.0 43 0.00093 25.8 5.6 44 35-78 14-62 (67)
27 TIGR00505 ribA GTP cyclohydrol 52.1 21 0.00046 34.2 4.4 33 42-74 131-163 (191)
28 PRK00393 ribA GTP cyclohydrola 51.8 21 0.00046 34.4 4.4 33 42-74 134-166 (197)
29 PF05990 DUF900: Alpha/beta hy 51.8 65 0.0014 31.6 8.0 41 253-296 42-88 (233)
30 smart00636 Glyco_18 Glycosyl h 49.8 89 0.0019 31.9 9.0 80 63-150 57-142 (334)
31 cd04743 NPD_PKS 2-Nitropropane 49.6 99 0.0022 32.2 9.2 79 22-123 56-134 (320)
32 cd02876 GH18_SI-CLP Stabilin-1 45.5 1.7E+02 0.0037 29.9 10.2 93 61-161 55-155 (318)
33 cd00598 GH18_chitinase-like Th 44.9 90 0.0019 29.2 7.5 84 62-152 54-142 (210)
34 PF04909 Amidohydro_2: Amidohy 43.9 1.1E+02 0.0025 29.2 8.3 102 138-295 85-187 (273)
35 PRK12485 bifunctional 3,4-dihy 43.6 27 0.00059 37.1 4.0 32 42-74 331-362 (369)
36 cd02873 GH18_IDGF The IDGF's ( 43.4 1.9E+02 0.0042 30.9 10.6 20 133-152 168-187 (413)
37 PRK13511 6-phospho-beta-galact 43.1 49 0.0011 36.1 6.1 45 39-83 57-120 (469)
38 cd06418 GH25_BacA-like BacA is 41.8 3.4E+02 0.0074 26.4 12.3 108 36-153 21-143 (212)
39 cd00641 GTP_cyclohydro2 GTP cy 41.7 37 0.00081 32.5 4.4 33 42-74 133-165 (193)
40 COG3934 Endo-beta-mannanase [C 41.5 1.3E+02 0.0028 33.3 8.6 187 93-346 123-312 (587)
41 PF14488 DUF4434: Domain of un 38.7 3.3E+02 0.0072 25.4 10.3 99 40-150 24-151 (166)
42 cd01543 PBP1_XylR Ligand-bindi 37.8 2E+02 0.0044 27.5 9.0 35 39-73 98-141 (265)
43 PRK14019 bifunctional 3,4-dihy 37.8 38 0.00082 36.0 4.0 33 42-75 328-360 (367)
44 COG0621 MiaB 2-methylthioadeni 37.6 2.4E+02 0.0052 30.7 10.1 131 22-209 194-335 (437)
45 PF00331 Glyco_hydro_10: Glyco 37.5 64 0.0014 33.3 5.6 88 248-344 221-311 (320)
46 PLN02998 beta-glucosidase 36.8 63 0.0014 35.7 5.7 72 258-341 390-466 (497)
47 COG4213 XylF ABC-type xylose t 36.8 57 0.0012 34.0 4.9 74 61-160 176-249 (341)
48 TIGR01579 MiaB-like-C MiaB-lik 36.4 5.5E+02 0.012 27.2 12.8 60 132-211 271-330 (414)
49 PRK09989 hypothetical protein; 35.5 4.3E+02 0.0094 25.8 13.5 51 24-75 4-58 (258)
50 PRK09525 lacZ beta-D-galactosi 34.2 4E+02 0.0087 32.3 12.2 97 23-124 352-464 (1027)
51 PRK09314 bifunctional 3,4-dihy 33.8 51 0.0011 34.6 4.2 34 41-74 300-334 (339)
52 PRK08815 GTP cyclohydrolase; P 33.6 54 0.0012 34.9 4.4 37 42-78 305-341 (375)
53 PRK09318 bifunctional 3,4-dihy 33.2 56 0.0012 35.0 4.4 37 42-78 320-356 (387)
54 PLN02849 beta-glucosidase 32.3 86 0.0019 34.7 5.9 45 39-83 82-145 (503)
55 cd06544 GH18_narbonin Narbonin 32.2 5.2E+02 0.011 25.8 11.2 155 60-276 58-220 (253)
56 PRK09311 bifunctional 3,4-dihy 31.9 60 0.0013 34.9 4.5 34 41-74 338-371 (402)
57 cd06548 GH18_chitinase The GH1 31.8 2.3E+02 0.005 28.9 8.7 78 68-151 82-169 (322)
58 PLN02831 Bifunctional GTP cycl 31.7 60 0.0013 35.4 4.4 36 42-77 373-408 (450)
59 COG1433 Uncharacterized conser 30.8 96 0.0021 27.8 4.9 39 40-78 56-94 (121)
60 PRK09319 bifunctional 3,4-dihy 30.7 63 0.0014 36.1 4.4 38 41-78 342-379 (555)
61 cd02879 GH18_plant_chitinase_c 30.1 5.9E+02 0.013 25.8 12.3 172 52-266 42-235 (299)
62 PF00704 Glyco_hydro_18: Glyco 29.7 5.6E+02 0.012 25.7 11.0 78 67-150 70-152 (343)
63 TIGR03632 bact_S11 30S ribosom 29.6 1.1E+02 0.0024 26.6 5.0 37 39-75 50-91 (108)
64 KOG0626 Beta-glucosidase, lact 28.9 1.4E+02 0.0031 33.2 6.7 72 256-338 403-485 (524)
65 COG3325 ChiA Chitinase [Carboh 27.6 6.7E+02 0.015 27.4 11.2 130 62-212 116-257 (441)
66 PF13377 Peripla_BP_3: Peripla 27.3 3.5E+02 0.0075 23.6 8.1 113 42-185 1-125 (160)
67 PRK10340 ebgA cryptic beta-D-g 27.2 5.3E+02 0.011 31.3 11.6 97 23-124 336-451 (1021)
68 PLN03059 beta-galactosidase; P 27.1 1.1E+03 0.024 28.0 14.0 116 40-163 63-223 (840)
69 PRK13347 coproporphyrinogen II 27.0 1.1E+02 0.0025 33.0 5.7 21 133-153 262-282 (453)
70 PF14587 Glyco_hydr_30_2: O-Gl 26.9 2.4E+02 0.0053 30.2 7.8 103 61-167 108-233 (384)
71 PF00150 Cellulase: Cellulase 25.9 2.5E+02 0.0055 27.1 7.5 69 244-323 62-134 (281)
72 PRK07198 hypothetical protein; 25.3 58 0.0013 34.9 2.9 37 42-78 338-375 (418)
73 PRK14334 (dimethylallyl)adenos 25.0 5.3E+02 0.012 27.7 10.3 58 132-209 270-327 (440)
74 TIGR03628 arch_S11P archaeal r 24.7 1.5E+02 0.0032 26.3 4.9 37 39-75 53-102 (114)
75 PF01229 Glyco_hydro_39: Glyco 24.2 9.5E+02 0.021 26.2 14.9 181 116-343 158-350 (486)
76 KOG0078 GTP-binding protein SE 22.5 1.9E+02 0.0042 28.3 5.6 82 20-125 41-129 (207)
77 PF06180 CbiK: Cobalt chelatas 22.2 8.2E+02 0.018 24.7 11.4 139 34-210 56-207 (262)
78 PF13756 Stimulus_sens_1: Stim 21.9 98 0.0021 27.0 3.2 26 38-63 3-31 (112)
79 TIGR03822 AblA_like_2 lysine-2 21.9 6.2E+02 0.013 26.0 9.7 38 41-78 158-205 (321)
80 cd02871 GH18_chitinase_D-like 21.7 8.6E+02 0.019 24.7 12.6 80 63-148 66-146 (312)
81 PRK09607 rps11p 30S ribosomal 21.3 1.9E+02 0.004 26.4 4.9 37 39-75 60-109 (132)
82 CHL00041 rps11 ribosomal prote 20.9 2E+02 0.0043 25.4 5.0 35 40-74 64-103 (116)
83 PF14871 GHL6: Hypothetical gl 20.9 2.3E+02 0.005 25.5 5.5 42 37-78 1-65 (132)
84 KOG0093 GTPase Rab3, small G p 20.7 2.1E+02 0.0046 26.9 5.2 60 52-124 71-137 (193)
85 COG0807 RibA GTP cyclohydrolas 20.5 1.7E+02 0.0038 28.3 4.9 39 42-80 133-171 (193)
86 PF00411 Ribosomal_S11: Riboso 20.3 1.6E+02 0.0034 25.7 4.2 36 40-75 51-91 (110)
87 PRK14328 (dimethylallyl)adenos 20.3 1.1E+03 0.023 25.3 12.4 60 131-210 279-338 (439)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.3e-85 Score=667.62 Aligned_cols=309 Identities=43% Similarity=0.756 Sum_probs=254.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhcc
Q 011468 24 IGVNWGTNASHPLPPAKVVELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRY 103 (485)
Q Consensus 24 ~GinYg~~~~n~ps~~~vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~ 103 (485)
||||||+.++|+|+|.++++++|+++|++|||||+|+++|+|+++|||+|++||+|++|+++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcch
Q 011468 104 FSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDL 183 (485)
Q Consensus 104 ~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~ 183 (485)
+|+ ++|++|+||||++... . ...|||+|+++|++|+++||+++|||+|+++++++..+|| ||.|.|++++
T Consensus 81 ~~~-----~~i~~i~VGnEv~~~~--~--~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~P-PS~g~F~~~~ 150 (310)
T PF00332_consen 81 LPA-----VNIRYIAVGNEVLTGT--D--NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFP-PSAGVFRSDI 150 (310)
T ss_dssp TTT-----SEEEEEEEEES-TCCS--G--GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SS-GGG-EESHHH
T ss_pred Ccc-----cceeeeecccccccCc--c--ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCC-CccCcccccc
Confidence 998 9999999999999764 1 2289999999999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHHhhcCCCceeccCccccccCCCc-ccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCc
Q 011468 184 NKTMIELLEFLSKHHSPFFVTISPFISFHQNKN-ISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMD 262 (485)
Q Consensus 184 ~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~-i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~ 262 (485)
.++|.++++||.+++||||+|+||||++.++|. ++||||+|+++...+ |++++|+||||+|+|++++||+|+|+++++
T Consensus 151 ~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~ 229 (310)
T PF00332_consen 151 ASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVP 229 (310)
T ss_dssp HHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--
T ss_pred hhhhhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999986 999999999988777 779999999999999999999999999999
Q ss_pred EEEeecccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeeccccccccCCCCCcccceeeeecCCce
Q 011468 263 IVVAQIGWPTDGVANATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDEDQRRTATGNFERHWGVFTFDGQA 342 (485)
Q Consensus 263 vvVtETGWPS~G~~~as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe~wK~~~~~~~E~~wGlf~~d~~~ 342 (485)
|+|+||||||+|+..|+++||+.|++++++++. .|||+||+. .+++||||||||+||++.+ +|||||||++||+|
T Consensus 230 vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~-~~~~y~F~~FdE~~K~~~~--~E~~wGlf~~d~~~ 304 (310)
T PF00332_consen 230 VVVGETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGN-GIDVYIFEAFDENWKPGPE--VERHWGLFYPDGTP 304 (310)
T ss_dssp EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS----EEES-SB--TTSSSSG--GGGG--SB-TTSSB
T ss_pred eEEeccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCC-CCeEEEEEEecCcCCCCCc--ccceeeeECCCCCe
Confidence 999999999999988999999999999999986 799999997 8999999999999998754 79999999999999
Q ss_pred eeeecc
Q 011468 343 KYHLNF 348 (485)
Q Consensus 343 ky~l~~ 348 (485)
||+|+|
T Consensus 305 ky~~~f 310 (310)
T PF00332_consen 305 KYDLDF 310 (310)
T ss_dssp SS----
T ss_pred ecCCCC
Confidence 999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-43 Score=339.95 Aligned_cols=254 Identities=18% Similarity=0.287 Sum_probs=199.8
Q ss_pred cccCCceeEEecCCCCC--CCCHHHHHHHHHh-CCC-CEEEEecCCh----HHHHHHhcCCceEEEecCcchhhhhhhcH
Q 011468 18 GSLAGAIGVNWGTNASH--PLPPAKVVELLKS-NNI-AKVKLFDADP----LVLEALSGSNIGVTVGIPNSLLKSLNSSK 89 (485)
Q Consensus 18 ~~~~~~~GinYg~~~~n--~ps~~~vv~llk~-~~i-~~VRlYd~d~----~vL~A~~~tgi~V~vGv~n~~l~~la~~~ 89 (485)
+++.+..+|+||++.++ ||+.+++..+|.. ..+ ..||+|.+|+ +|++|+...|+||+||||..+ .+ .
T Consensus 40 ~sa~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~td--d~---~ 114 (305)
T COG5309 40 ASASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTD--DI---H 114 (305)
T ss_pred cccccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeecc--ch---h
Confidence 44667789999999876 8999999877754 334 3999999886 577899999999999999632 11 1
Q ss_pred HHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEcccccccccc
Q 011468 90 KAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLS 169 (485)
Q Consensus 90 ~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~ 169 (485)
...+.-+...+.+++.. +.|++|+||||+|+|+ +.++++|+.+|..+|.+|+++|++ +||+|+++|.++.+
T Consensus 115 ~~~~~til~ay~~~~~~-----d~v~~v~VGnEal~r~--~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~ 185 (305)
T COG5309 115 DAVEKTILSAYLPYNGW-----DDVTTVTVGNEALNRN--DLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN 185 (305)
T ss_pred hhHHHHHHHHHhccCCC-----CceEEEEechhhhhcC--CCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC
Confidence 22222355667777654 8999999999999996 667999999999999999999996 57999999999876
Q ss_pred CCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccccCCCcccccccccccCCCccccCcccccchHHHhHHHH
Q 011468 170 ESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTL 249 (485)
Q Consensus 170 s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav 249 (485)
. +.+++..||+ |+|.||||+.....+ +.+ .++..|+..+
T Consensus 186 n--------------p~l~~~SDfi-------a~N~~aYwd~~~~a~----------------~~~----~f~~~q~e~v 224 (305)
T COG5309 186 N--------------PELCQASDFI-------AANAHAYWDGQTVAN----------------AAG----TFLLEQLERV 224 (305)
T ss_pred C--------------hHHhhhhhhh-------hcccchhccccchhh----------------hhh----HHHHHHHHHH
Confidence 2 2345555665 999999998753221 111 1334556665
Q ss_pred HHHHHhcCCCCCcEEEeecccCCCCCCC----CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeeccccccccCC
Q 011468 250 VTALSTVGFPEMDIVVAQIGWPTDGVAN----ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDEDQRRTA 325 (485)
Q Consensus 250 ~~a~~k~g~~~~~vvVtETGWPS~G~~~----as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe~wK~~~ 325 (485)
+.+. | .+++++|+||||||.|..+ ||++||++|++++++.+++ . ++++|+||+|||+||...
T Consensus 225 qsa~---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~-G~d~fvfeAFdd~WK~~~ 290 (305)
T COG5309 225 QSAC---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------C-GYDVFVFEAFDDDWKADG 290 (305)
T ss_pred HHhc---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------c-CccEEEeeeccccccCcc
Confidence 5442 3 3499999999999999875 9999999999999998864 1 689999999999999987
Q ss_pred CCCcccceeeeecCC
Q 011468 326 TGNFERHWGVFTFDG 340 (485)
Q Consensus 326 ~~~~E~~wGlf~~d~ 340 (485)
..++|+|||++..|+
T Consensus 291 ~y~VEkywGv~~s~~ 305 (305)
T COG5309 291 SYGVEKYWGVLSSDR 305 (305)
T ss_pred ccchhhceeeeccCC
Confidence 778999999998774
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.94 E-value=2.3e-27 Score=197.69 Aligned_cols=83 Identities=49% Similarity=0.927 Sum_probs=80.0
Q ss_pred eeeEecCCCChhhHHHHHHhccCc-cccCccCCCCCCCCCC-ccchhhHHHHHHHHHhcCCCCCCCCCCceeEEecCCCC
Q 011468 367 RWCVVNNNKDLSNATAIALEACSV-ADCSAISPGGSCYNIS-WPRNISYAFNSYYQQHNQRHDNCDFGGLGLITTVDPSA 444 (485)
Q Consensus 367 ~~CV~~~~~~~~~l~~~ld~aCg~-~dC~~I~~~g~c~~~~-~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~~~~~dps~ 444 (485)
+|||+|+++++++||++||||||+ +||++|++||+||.++ +++|||||||+|||++++..++|||+|+|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 9999999999999985 68999999999999999999999999999999999999
Q ss_pred Cceee
Q 011468 445 DNCRF 449 (485)
Q Consensus 445 ~~C~~ 449 (485)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99976
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.84 E-value=1.9e-21 Score=159.43 Aligned_cols=70 Identities=36% Similarity=0.680 Sum_probs=59.4
Q ss_pred eeeEecCCCChhhHHHHHHhccCc--cccCccCCCCCCCC------CCccchhhHHHHHHHHHhcCCCCCCCCCCcee
Q 011468 367 RWCVVNNNKDLSNATAIALEACSV--ADCSAISPGGSCYN------ISWPRNISYAFNSYYQQHNQRHDNCDFGGLGL 436 (485)
Q Consensus 367 ~~CV~~~~~~~~~l~~~ld~aCg~--~dC~~I~~~g~c~~------~~~~~~aSya~N~Yyq~~~~~~~aCdF~G~a~ 436 (485)
+|||+|+++++++|+++|||||++ +||++|++||+.|. ++.++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999999 99999999999543 35699999999999999999999999999996
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.89 E-value=1.8e-07 Score=96.42 Aligned_cols=242 Identities=17% Similarity=0.210 Sum_probs=124.1
Q ss_pred HHHHHHHHHhCCCCEE--EEecC-------C-hHH---HHHHhcCCceEEEecCc------------------chhhhhh
Q 011468 38 PAKVVELLKSNNIAKV--KLFDA-------D-PLV---LEALSGSNIGVTVGIPN------------------SLLKSLN 86 (485)
Q Consensus 38 ~~~vv~llk~~~i~~V--RlYd~-------d-~~v---L~A~~~tgi~V~vGv~n------------------~~l~~la 86 (485)
..++.++||..|+..| |+|.- | ..+ .+.+++.|++|+|-.-- ..++.++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3678999999998655 55521 1 133 35556899999998821 1122222
Q ss_pred hcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccC--CC--CCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccc
Q 011468 87 SSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQ--SY--SEQFHPFIIGAAMNIQIALGRANLASEVKVVVPC 162 (485)
Q Consensus 87 ~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~--~~--~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~ 162 (485)
++..++.+.-+...-.. |..++.|-||||.-.. ++ .....+.+...++.-.+++++..- .+||-.-.
T Consensus 106 ---~~v~~yT~~vl~~l~~~----G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~ 176 (332)
T PF07745_consen 106 ---KAVYDYTKDVLQALKAA----GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHL 176 (332)
T ss_dssp ---HHHHHHHHHHHHHHHHT----T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEE
T ss_pred ---HHHHHHHHHHHHHHHHC----CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEE
Confidence 23344444433333333 4889999999997532 11 123356778888888888887554 35543211
Q ss_pred cccccccCCCCCCCcccCcchhHHHHHHHHHHhhcC---CCceeccCccccccCCCcccccccccccCCCccccCccccc
Q 011468 163 SFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHH---SPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYK 239 (485)
Q Consensus 163 ~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~---sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~ 239 (485)
. + |.. ...++-..+.|...+ |.++++.||||... +
T Consensus 177 ~-----~----~~~-------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~------l-------------------- 214 (332)
T PF07745_consen 177 A-----N----GGD-------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT------L-------------------- 214 (332)
T ss_dssp S----------TTS-------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-------H--------------------
T ss_pred C-----C----CCc-------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch------H--------------------
Confidence 1 1 111 112333344444333 68899999998741 0
Q ss_pred chHHHhHHHHHHHHHhcCCCCCcEEEeecccCCCCCC-----------------CCCHHHHHHHHHHHHHHHHhcCCCCC
Q 011468 240 NSFDLSYDTLVTALSTVGFPEMDIVVAQIGWPTDGVA-----------------NATSSTAEIFMKGLINHLRSRSGTPL 302 (485)
Q Consensus 240 nlfda~~Dav~~a~~k~g~~~~~vvVtETGWPS~G~~-----------------~as~~na~~y~~~lv~~~~s~~GTP~ 302 (485)
+-+...++.+ .++ | +|+|+|.|||||..-+. .+|++.|+.|++++++.+.+-.+
T Consensus 215 ~~l~~~l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~--- 285 (332)
T PF07745_consen 215 EDLKNNLNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN--- 285 (332)
T ss_dssp HHHHHHHHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHHHHHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc---
Confidence 0112222222 233 3 48999999999998111 16899999999999999875211
Q ss_pred CCCCCCccEEEeeccccccccC-------CCCCcccceeeeecCCceeeee
Q 011468 303 RPRNPPIETYIYSLLDEDQRRT-------ATGNFERHWGVFTFDGQAKYHL 346 (485)
Q Consensus 303 rp~~~~~~~y~F~lFDe~wK~~-------~~~~~E~~wGlf~~d~~~ky~l 346 (485)
+. .+-+|+-|- .|-+. .....|.. +||+.+|++--+|
T Consensus 286 --~~-g~GvfYWeP---~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 286 --GG-GLGVFYWEP---AWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp --TT-EEEEEEE-T---T-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred --CC-eEEEEeecc---ccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 11 355665542 23221 11133433 8999888775443
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.79 E-value=9.3e-08 Score=96.91 Aligned_cols=158 Identities=16% Similarity=0.271 Sum_probs=84.0
Q ss_pred eeEEecCCCC-------CCCC-H---HHHHHHHHhCCCCEEEEecCCh-----HHHHHHhcCCceEEEecCcc--hhhhh
Q 011468 24 IGVNWGTNAS-------HPLP-P---AKVVELLKSNNIAKVKLFDADP-----LVLEALSGSNIGVTVGIPNS--LLKSL 85 (485)
Q Consensus 24 ~GinYg~~~~-------n~ps-~---~~vv~llk~~~i~~VRlYd~d~-----~vL~A~~~tgi~V~vGv~n~--~l~~l 85 (485)
.||.|-+.++ |+.+ + ...+.+||+.|+..||+|..|| .-+++|++.||-|++.|... .|...
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 7999998765 2222 2 2345688999999999999885 46899999999999999643 23221
Q ss_pred hhcHHHHHHH-------HHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEE
Q 011468 86 NSSKKAAESW-------VHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKV 158 (485)
Q Consensus 86 a~~~~~A~~W-------v~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkV 158 (485)
++ +..| +.+-|..+..- +|+-+..+|||++....+...++.+-.+++.+|+-+++.++. +|+|
T Consensus 110 --~P--~~sw~~~l~~~~~~vid~fa~Y-----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPV 179 (314)
T PF03198_consen 110 --DP--APSWNTDLLDRYFAVIDAFAKY-----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPV 179 (314)
T ss_dssp --S--------HHHHHHHHHHHHHHTT------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----E
T ss_pred --CC--cCCCCHHHHHHHHHHHHHhccC-----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCce
Confidence 11 1223 11122333221 789999999999976433345788999999999999999984 5998
Q ss_pred EccccccccccCCCCCCCcccCcchhHHHHHHHHHHh-----hcCCCceeccCccc
Q 011468 159 VVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLS-----KHHSPFFVTISPFI 209 (485)
Q Consensus 159 sT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~-----~t~sp~~vNiyPyf 209 (485)
+-+-+- + .+.-.++.++|. +.-|.|++|.|-|=
T Consensus 180 GYsaaD-~-----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 180 GYSAAD-D-----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp EEEE---------------------TTTHHHHHHHTTBTT-----S-EEEEE----
T ss_pred eEEccC-C-----------------hhHHHHHHHHhcCCCcccccceeeeccceec
Confidence 854321 1 011234555654 34567899998653
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=8e-06 Score=81.91 Aligned_cols=208 Identities=13% Similarity=0.191 Sum_probs=112.3
Q ss_pred HHHHHHHHHhCCCCEE--EEe----cCC--------hH------HHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHH-
Q 011468 38 PAKVVELLKSNNIAKV--KLF----DAD--------PL------VLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWV- 96 (485)
Q Consensus 38 ~~~vv~llk~~~i~~V--RlY----d~d--------~~------vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv- 96 (485)
.+++.+.||..|+..| |+| |.| .+ +-+.+++.|+||++-.--.|.-.--.-+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 4667889999998655 555 333 12 22344578999999873221100000011112231
Q ss_pred ------Hh--------hhhccccCCCCCccEEEEeeecCccccC--CCCCC--cHHHHHHHHHHHHHHHHhcCCCCceEE
Q 011468 97 ------HD--------NVTRYFSAGHGNGVRFEYVALGDEPFLQ--SYSEQ--FHPFIIGAAMNIQIALGRANLASEVKV 158 (485)
Q Consensus 97 ------~~--------~V~~~~p~g~~~~~~I~~I~VGNEvl~~--~~~~~--~~~~Lv~am~~v~~aL~~~gl~~~IkV 158 (485)
++ -+...... |..+..|-||||.-.. ++.+. ....+-.-++.-.+++|... ..|||
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~e----Gi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv 218 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKE----GILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKV 218 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHc----CCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceE
Confidence 11 22223333 3778899999998532 12222 23445555555555666533 35766
Q ss_pred EccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccccCCCcccccccccccCCCccccCcccc
Q 011468 159 VVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTY 238 (485)
Q Consensus 159 sT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y 238 (485)
---. .+. -..+.||-=..++-+.-+|| |.|..--||||...-+. +
T Consensus 219 ~lHl-----a~g---~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~n--------------------L-- 263 (403)
T COG3867 219 ALHL-----AEG---ENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLNN--------------------L-- 263 (403)
T ss_pred EEEe-----cCC---CCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHHH--------------------H--
Confidence 4322 221 22344441111222333444 56788899999863211 1
Q ss_pred cchHHHhHHHHHHHHHhcCCCCCcEEEeeccc--------------CCCCCC--C-CCHHHHHHHHHHHHHHHHh
Q 011468 239 KNSFDLSYDTLVTALSTVGFPEMDIVVAQIGW--------------PTDGVA--N-ATSSTAEIFMKGLINHLRS 296 (485)
Q Consensus 239 ~nlfda~~Dav~~a~~k~g~~~~~vvVtETGW--------------PS~G~~--~-as~~na~~y~~~lv~~~~s 296 (485)
...++.+. .+ | +|.|+|.||+. |+.+.. + .+++.|++|.++++..+..
T Consensus 264 ----~~nl~dia---~r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 264 ----TTNLNDIA---SR--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred ----HhHHHHHH---HH--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 11122221 11 2 58999999999 776644 2 7889999999999998864
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.88 E-value=0.0012 Score=73.61 Aligned_cols=257 Identities=12% Similarity=0.059 Sum_probs=135.5
Q ss_pred ceeEEecCCC---CCCCCHHH---HHHHHHhCCCCEEEEe--cCChHHHHHHhcCCceEEEecCcchh------------
Q 011468 23 AIGVNWGTNA---SHPLPPAK---VVELLKSNNIAKVKLF--DADPLVLEALSGSNIGVTVGIPNSLL------------ 82 (485)
Q Consensus 23 ~~GinYg~~~---~n~ps~~~---vv~llk~~~i~~VRlY--d~d~~vL~A~~~tgi~V~vGv~n~~l------------ 82 (485)
..|+|+=.-. ...++.+. .+++||+.|+..||+- -.++..+.++-..||-|+.=+|....
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 3577763211 11234443 3567899999999993 23578999999999998854432100
Q ss_pred ---hhhh------hcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCC
Q 011468 83 ---KSLN------SSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLA 153 (485)
Q Consensus 83 ---~~la------~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 153 (485)
+... ...+...+-++.-|..+..+ -.|..=.+|||.-... ...-..++.+.+.+++..-+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH-----PSIi~Ws~gNE~~~~~------~~~~~~~~~l~~~~k~~Dpt 442 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNH-----PSVVMWSIANEPASRE------QGAREYFAPLAELTRKLDPT 442 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCC-----ceEEEEeeccCCCccc------hhHHHHHHHHHHHHHhhCCC
Confidence 0000 00111222244455555433 6788999999974321 12223344444555444432
Q ss_pred CceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccccCCCcccccccccccCCCcccc
Q 011468 154 SEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKD 233 (485)
Q Consensus 154 ~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d 233 (485)
+ +|+.+..+. . . |... . +.+++|+ +..|.|+=|-. +.. +.+
T Consensus 443 R--~vt~~~~~~---~-~--~~~~----~----~~~~~Dv-------~~~N~Y~~wy~--~~~---~~~----------- 483 (604)
T PRK10150 443 R--PVTCVNVMF---A-T--PDTD----T----VSDLVDV-------LCLNRYYGWYV--DSG---DLE----------- 483 (604)
T ss_pred C--ceEEEeccc---C-C--cccc----c----ccCcccE-------EEEcccceecC--CCC---CHH-----------
Confidence 2 344432110 0 0 1100 0 1223444 47888752211 100 000
Q ss_pred CcccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccCCCC------CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 011468 234 SHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWPTDG------VANATSSTAEIFMKGLINHLRSRSGTPLRPRNP 307 (485)
Q Consensus 234 ~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWPS~G------~~~as~~na~~y~~~lv~~~~s~~GTP~rp~~~ 307 (485)
.....|+..++.. .++ + +++++|+|.|+.+.- +..-|.+.|..|++...+.+.+ +|.
T Consensus 484 ---~~~~~~~~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-- 546 (604)
T PRK10150 484 ---TAEKVLEKELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-- 546 (604)
T ss_pred ---HHHHHHHHHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc--
Confidence 0011122222221 111 2 799999999976532 1225788999998887776653 344
Q ss_pred CccEEEeeccccccccCCCCCcccceeeeecCCceeeee
Q 011468 308 PIETYIYSLLDEDQRRTATGNFERHWGVFTFDGQAKYHL 346 (485)
Q Consensus 308 ~~~~y~F~lFDe~wK~~~~~~~E~~wGlf~~d~~~ky~l 346 (485)
-.-.|+..+||-....+....-..+.||++.||+||-..
T Consensus 547 ~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 547 VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 356899999996554332100134789999999999654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.78 E-value=0.0022 Score=63.20 Aligned_cols=132 Identities=14% Similarity=0.031 Sum_probs=82.3
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------Ch-------HHHHHHhcCCceEEEecCcc-
Q 011468 22 GAIGVNWGTNASHPLPPAKVVELLKSNNIAKVKLFDA-------------DP-------LVLEALSGSNIGVTVGIPNS- 80 (485)
Q Consensus 22 ~~~GinYg~~~~n~ps~~~vv~llk~~~i~~VRlYd~-------------d~-------~vL~A~~~tgi~V~vGv~n~- 80 (485)
...|+|-. ..+.. ..++.++.|++.|++.|||.-. +. .+|++++..||+|+|.+...
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566665 22112 6788899999999999999722 11 46788889999999988652
Q ss_pred hh---hhhhhcHHHHHHHHHh---hhhccc-cCCCCCccEEEEeeecCccccCCCC----CCcHHHHHHHHHHHHHHHHh
Q 011468 81 LL---KSLNSSKKAAESWVHD---NVTRYF-SAGHGNGVRFEYVALGDEPFLQSYS----EQFHPFIIGAAMNIQIALGR 149 (485)
Q Consensus 81 ~l---~~la~~~~~A~~Wv~~---~V~~~~-p~g~~~~~~I~~I~VGNEvl~~~~~----~~~~~~Lv~am~~v~~aL~~ 149 (485)
.. ...........+|+++ .|...+ .. ..|.++=+.||+...... ......+.+.++.+.+++++
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~-----~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~ 161 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDN-----PPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRA 161 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTT-----TTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCC-----CcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHh
Confidence 00 0111122233344333 344444 22 457799999999875311 01236788999999999999
Q ss_pred cCCCCceEEEc
Q 011468 150 ANLASEVKVVV 160 (485)
Q Consensus 150 ~gl~~~IkVsT 160 (485)
.+-+..|-|..
T Consensus 162 ~~~~~~i~~~~ 172 (281)
T PF00150_consen 162 ADPNHLIIVGG 172 (281)
T ss_dssp TTSSSEEEEEE
T ss_pred cCCcceeecCC
Confidence 98765454443
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.29 E-value=0.019 Score=57.14 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeecccc-ccccCCCC
Q 011468 249 LVTALSTVGFPEMDIVVAQIGWPTDGVANATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDE-DQRRTATG 327 (485)
Q Consensus 249 v~~a~~k~g~~~~~vvVtETGWPS~G~~~as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe-~wK~~~~~ 327 (485)
+...|++++-.+++|+|||.+-|..+ +++.|+.+++.+++.+.+. |. -..+++..+.|. .|.+
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~--v~gi~~Wg~~d~~~W~~---- 234 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PA--VTGVTVWGVTDKYSWLD---- 234 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CC--eeEEEEeCCccCCcccC----
Confidence 33444444444789999999999753 4488899999999988752 22 234666666664 4654
Q ss_pred CcccceeeeecCCceeee
Q 011468 328 NFERHWGVFTFDGQAKYH 345 (485)
Q Consensus 328 ~~E~~wGlf~~d~~~ky~ 345 (485)
+.+-|||+.|++||-.
T Consensus 235 --~~~~~L~d~~~~~kpa 250 (254)
T smart00633 235 --GGAPLLFDANYQPKPA 250 (254)
T ss_pred --CCCceeECCCCCCChh
Confidence 2456999999998843
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.17 E-value=0.019 Score=56.83 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=95.7
Q ss_pred cEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHH
Q 011468 112 VRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELL 191 (485)
Q Consensus 112 ~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~l 191 (485)
..++.|..=||+=...-....+++.+...+++.+.|+. ..||+..|.....-. + .++-.+-|.+.+
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~--------~--~~~g~~Wl~~F~ 129 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG--------G--TPGGLDWLSQFL 129 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC--------C--CCCccHHHHHHH
Confidence 46888999999976542345677888888877777764 347877664311100 0 001112344433
Q ss_pred HHHhhcCCCceeccCccccccCCCcccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccC
Q 011468 192 EFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWP 271 (485)
Q Consensus 192 dfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWP 271 (485)
+-+.....+=.|++|.| ..+ ++...+.+....++.| +||+|||.|+.
T Consensus 130 ~~~~~~~~~D~iavH~Y---~~~---------------------------~~~~~~~i~~~~~~~~---kPIWITEf~~~ 176 (239)
T PF11790_consen 130 SACARGCRVDFIAVHWY---GGD---------------------------ADDFKDYIDDLHNRYG---KPIWITEFGCW 176 (239)
T ss_pred HhcccCCCccEEEEecC---CcC---------------------------HHHHHHHHHHHHHHhC---CCEEEEeeccc
Confidence 33321122223445554 100 1122223323334444 89999999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeeccccccccCCCCCcccceeeeecCCce
Q 011468 272 TDGVANATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDEDQRRTATGNFERHWGVFTFDGQA 342 (485)
Q Consensus 272 S~G~~~as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe~wK~~~~~~~E~~wGlf~~d~~~ 342 (485)
. +....+.+.++.|.+..+..+.+ ++. --.++||...+ .+. +....-.|++.+|++
T Consensus 177 ~-~~~~~~~~~~~~fl~~~~~~ld~------~~~--VeryawF~~~~-~~~-----~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 177 N-GGSQGSDEQQASFLRQALPWLDS------QPY--VERYAWFGFMN-DGS-----GVNPNSALLDADGSL 232 (239)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHhc------CCC--eeEEEeccccc-ccC-----CCccccccccCCCCc
Confidence 6 45568899999999999999875 233 23577888323 322 234555677777654
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=94.23 E-value=9.5 Score=41.07 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCEEEEec------------CC-------hHHHHHHhcCCceEEEecCc
Q 011468 39 AKVVELLKSNNIAKVKLFD------------AD-------PLVLEALSGSNIGVTVGIPN 79 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd------------~d-------~~vL~A~~~tgi~V~vGv~n 79 (485)
.+.+++||+.|++.+|+=- .| .++|.++...||+++|.+.-
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 5678899999999988620 12 15788999999999999953
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=89.33 E-value=4.4 Score=40.98 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=55.2
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHhcCCceEEEecCcchh---hh------h
Q 011468 23 AIGVNWGTNASH---PLPPAKV---VELLKSNNIAKVKLFD--ADPLVLEALSGSNIGVTVGIPNSLL---KS------L 85 (485)
Q Consensus 23 ~~GinYg~~~~n---~ps~~~v---v~llk~~~i~~VRlYd--~d~~vL~A~~~tgi~V~vGv~n~~l---~~------l 85 (485)
..|+|+...... .++.+++ +++||+.|+..||+.. .++..+.++-..||-|+.-++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998874332 3454444 4567899999999964 3578999999999999987764110 00 0
Q ss_pred hhc---HHHHHHHHHhhhhccccCCCCCccEEEEeeecCcc
Q 011468 86 NSS---KKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEP 123 (485)
Q Consensus 86 a~~---~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEv 123 (485)
..+ .+.+.+.++..|..+..+ -.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NH-----PSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNH-----PSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT------TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCc-----CchheeecCccC
Confidence 011 223334455556655433 457788899999
No 14
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=87.27 E-value=11 Score=39.70 Aligned_cols=102 Identities=9% Similarity=0.117 Sum_probs=58.3
Q ss_pred CCCEEEEecC-ChHHHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCC
Q 011468 49 NIAKVKLFDA-DPLVLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQS 127 (485)
Q Consensus 49 ~i~~VRlYd~-d~~vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~ 127 (485)
.+++|-+|+. |++++..++..|++|++..... .+.+ +++..-++++++ +..++.. -.+.+|-+==|-....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~s-iv~~~~~-----~gfDGIdIDwE~p~~~ 126 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQ-KVELAKS-----QFMDGINIDIEQPITK 126 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHH-HHHHHHH-----hCCCeEEEcccCCCCC
Confidence 5788888864 7899998899999999865322 2223 344433445443 2323222 1233443333333211
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 011468 128 YSEQFHPFIIGAAMNIQIALGRANLASEVKVV 159 (485)
Q Consensus 128 ~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVs 159 (485)
+......++.-|+.+|++|++.+..-.+.|.
T Consensus 127 -~~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 127 -GSPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred -CcchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 1112457888999999999987643334343
No 15
>PLN02814 beta-glucosidase
Probab=86.66 E-value=56 Score=36.12 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHhcCCceEEEecCcchhh
Q 011468 39 AKVVELLKSNNIAKVKL-------FD-----ADP-------LVLEALSGSNIGVTVGIPNSLLK 83 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRl-------Yd-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 83 (485)
.|.+++||+.|++.-|+ += .|+ +++.++.+.||+-+|.+.--+++
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 56789999988777664 31 132 57899999999999999654444
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=77.47 E-value=1 Score=48.67 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=125.3
Q ss_pred HHHHHHHHhCCCCEEEEec-------------CCh-------HHHHHHhcCCceEEEecCcchhhhhh------hcHHHH
Q 011468 39 AKVVELLKSNNIAKVKLFD-------------ADP-------LVLEALSGSNIGVTVGIPNSLLKSLN------SSKKAA 92 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd-------------~d~-------~vL~A~~~tgi~V~vGv~n~~l~~la------~~~~~A 92 (485)
++.+++||+.|++..|+== .|+ ++|..+...||+.+|.+.--+++..- .+.+.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 5678999999999998741 122 57899999999999999643333211 112222
Q ss_pred HHHHHhh---hhccccCCCCCccEEEEeeecCccccCC---C-------CCCc-------HHHHHHHHHHHHHHHHhcCC
Q 011468 93 ESWVHDN---VTRYFSAGHGNGVRFEYVALGDEPFLQS---Y-------SEQF-------HPFIIGAAMNIQIALGRANL 152 (485)
Q Consensus 93 ~~Wv~~~---V~~~~p~g~~~~~~I~~I~VGNEvl~~~---~-------~~~~-------~~~Lv~am~~v~~aL~~~gl 152 (485)
+|..+. |...+ |+.|+.-+.=||+..-. + .... ...++-|-..+.+++++..-
T Consensus 141 -~~F~~Ya~~~~~~~------gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~ 213 (455)
T PF00232_consen 141 -DWFARYAEFVFERF------GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP 213 (455)
T ss_dssp -HHHHHHHHHHHHHH------TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHh------CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc
Confidence 222221 22222 25788888889986321 0 1111 22344455555666676664
Q ss_pred CCceEEEccccccccccCCCCCCCc---c----------c-----CcchhHHHHH--------------HHHHHhhcCCC
Q 011468 153 ASEVKVVVPCSFDTFLSESGKPSGG---H----------F-----RPDLNKTMIE--------------LLEFLSKHHSP 200 (485)
Q Consensus 153 ~~~IkVsT~~~~~~l~~s~p~Ps~g---~----------F-----~~~~~~~~~~--------------~ldfL~~t~sp 200 (485)
+ .+|+..++........+.|..- . | ..+.-..|++ -+..|..+.|+
T Consensus 214 ~--~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DF 291 (455)
T PF00232_consen 214 D--GKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDF 291 (455)
T ss_dssp T--SEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSE
T ss_pred c--eEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchh
Confidence 3 4666665544321110101000 0 0 0000011111 12334667889
Q ss_pred ceeccCccccccCCC--ccccccc---ccccC---CCccccCc-ccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccC
Q 011468 201 FFVTISPFISFHQNK--NISLDFA---LFKET---AHPHKDSH-KTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWP 271 (485)
Q Consensus 201 ~~vNiyPyf~~~~~~--~i~ldyA---~F~~~---~~~~~d~~-~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWP 271 (485)
+++|-|.=.--...+ .....+. .+... .....+.+ ..|- ....+.+...=+ -|++++|+|||.|++
T Consensus 292 lGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P---~Gl~~~L~~l~~--~Y~~~pI~ITENG~~ 366 (455)
T PF00232_consen 292 LGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYP---EGLRDVLRYLKD--RYGNPPIYITENGIG 366 (455)
T ss_dssp EEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBET---HHHHHHHHHHHH--HHTSSEEEEEEE---
T ss_pred hhhccccceeeccCccccccccccCCccccccccccccccccCccccc---chHhhhhhhhcc--ccCCCcEEEeccccc
Confidence 999988622222222 1111111 11100 00011111 1111 112222222212 266799999999998
Q ss_pred CCCCCC-------CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeecccc-ccccCCCCCcccceeeeecC
Q 011468 272 TDGVAN-------ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDE-DQRRTATGNFERHWGVFTFD 339 (485)
Q Consensus 272 S~G~~~-------as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe-~wK~~~~~~~E~~wGlf~~d 339 (485)
...... --++--+.++..+.+.++. |-+ -.-+|..++.|- .|.. +..+.|||++-|
T Consensus 367 ~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~d--Gv~------V~GY~~WSl~Dn~Ew~~----Gy~~rfGl~~VD 430 (455)
T PF00232_consen 367 DPDEVDDGKVDDDYRIDYLQDHLNQVLKAIED--GVN------VRGYFAWSLLDNFEWAE----GYKKRFGLVYVD 430 (455)
T ss_dssp EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHT--T-E------EEEEEEETSB---BGGG----GGGSE--SEEEE
T ss_pred ccccccccCcCcHHHHHHHHHHHHHHHhhhcc--CCC------eeeEeeecccccccccc----CccCccCceEEc
Confidence 776531 1122234455555555532 321 234777888885 3543 468999999998
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=75.91 E-value=9.6 Score=39.97 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCEEEEecC-----C-----------hHHHHHHhcCCceEEEecC
Q 011468 39 AKVVELLKSNNIAKVKLFDA-----D-----------PLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd~-----d-----------~~vL~A~~~tgi~V~vGv~ 78 (485)
++.+++||..|++.|||... . -.+|..++..||+|+|+++
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 55677888899999998432 1 2478888999999999985
No 18
>PRK09936 hypothetical protein; Provisional
Probab=74.03 E-value=25 Score=36.04 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=40.6
Q ss_pred eeEEecCCCCC-CCCHHHHHH---HHHhCCCCEEEE-e----cCC--------hHHHHHHhcCCceEEEecCcc
Q 011468 24 IGVNWGTNASH-PLPPAKVVE---LLKSNNIAKVKL-F----DAD--------PLVLEALSGSNIGVTVGIPNS 80 (485)
Q Consensus 24 ~GinYg~~~~n-~ps~~~vv~---llk~~~i~~VRl-Y----d~d--------~~vL~A~~~tgi~V~vGv~n~ 80 (485)
-|+=|-|...| -.++++--+ .++..|++.+=+ | +.| .+.|+++.+.||+|.||++-|
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 46679998777 456666554 556688876644 2 222 257888889999999999865
No 19
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.66 E-value=19 Score=38.12 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=37.9
Q ss_pred ccchHHHhHHHHHHHHHhcCCCCCcEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHHHhc
Q 011468 238 YKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWPTDGVAN------ATSSTAEIFMKGLINHLRSR 297 (485)
Q Consensus 238 y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWPS~G~~~------as~~na~~y~~~lv~~~~s~ 297 (485)
|.|-|++-+-.........|++..+|+.+ |||.|.-- .|-.-++..+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 44555543333333445578888899998 99999751 66666677777788877653
No 20
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=65.56 E-value=41 Score=34.91 Aligned_cols=77 Identities=10% Similarity=0.251 Sum_probs=40.0
Q ss_pred cCCceEEEecC--cc---hhhhhhhcHHHHHHHHHhhhhccccC-CCCCccEEEEeeecCccccCCCCCCcHHHHHHHHH
Q 011468 68 GSNIGVTVGIP--NS---LLKSLNSSKKAAESWVHDNVTRYFSA-GHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAM 141 (485)
Q Consensus 68 ~tgi~V~vGv~--n~---~l~~la~~~~~A~~Wv~~~V~~~~p~-g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~ 141 (485)
+.++||++.|. +. ....++++...-.++++. |..++.. ++ .|..|..=-.+..- . .......++..|+
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~-DGidiDwE~p~~~~---~-~~~d~~~~~~ll~ 141 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGF-DGLDLDWEYPGQRG---G-PPEDKENFVTLLK 141 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCC-CCeeeeeeccccCC---C-CHHHHHHHHHHHH
Confidence 35899998884 22 345565555443444333 3333221 00 12444432222210 0 0122457889999
Q ss_pred HHHHHHHhc
Q 011468 142 NIQIALGRA 150 (485)
Q Consensus 142 ~v~~aL~~~ 150 (485)
.+|++|.+.
T Consensus 142 ~lr~~l~~~ 150 (362)
T cd02872 142 ELREAFEPE 150 (362)
T ss_pred HHHHHHHhh
Confidence 999999987
No 21
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=63.58 E-value=16 Score=38.09 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHhcCCceEEEecCcchhh-hhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCC-CCcHHHHHHHHH
Q 011468 64 EALSGSNIGVTVGIPNSLLK-SLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYS-EQFHPFIIGAAM 141 (485)
Q Consensus 64 ~A~~~tgi~V~vGv~n~~l~-~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~-~~~~~~Lv~am~ 141 (485)
+=++.+|++|+.|+.- .+. ....+......|=-+|...++.-....+-+|.+-=.|||.-..+.. ...+.++.....
T Consensus 116 ~F~~~tG~~liFgLNA-L~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~ 194 (319)
T PF03662_consen 116 NFAQKTGLKLIFGLNA-LLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFI 194 (319)
T ss_dssp HHHHHHT-EEEEEE-T-TTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH-
T ss_pred HHHHHhCCEEEEEecc-cCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHHH
Confidence 4445799999999842 100 0001123346777666444321100012357778889997643211 224678888888
Q ss_pred HHHHHHHh
Q 011468 142 NIQIALGR 149 (485)
Q Consensus 142 ~v~~aL~~ 149 (485)
.+|+.|++
T Consensus 195 ~Lr~il~~ 202 (319)
T PF03662_consen 195 QLRKILNE 202 (319)
T ss_dssp --HHHHHH
T ss_pred HHHHHHHH
Confidence 88888865
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=60.76 E-value=11 Score=35.43 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecC
Q 011468 41 VVELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 41 vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
-+|.|+..|+++||+...+|.=+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 46888999999999999999999999999999975443
No 23
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=57.47 E-value=87 Score=30.86 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=43.6
Q ss_pred HHHHHHhcCCceEEEecCcch---hhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHH
Q 011468 61 LVLEALSGSNIGVTVGIPNSL---LKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFII 137 (485)
Q Consensus 61 ~vL~A~~~tgi~V~vGv~n~~---l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv 137 (485)
..+++++..|+||++.|.+.. ...+.+++...+++++ +|..++.. -.+.+|-+==|-... ......
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~-----~~~DGIdiDwE~~~~-----~~~~~~ 118 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVS-----YNLDGIDVDLEGPDV-----TFGDYL 118 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHH-----hCCCceeEEeeccCc-----cHhHHH
Confidence 345677778999998886532 2234445544444433 33333221 122333333343311 024567
Q ss_pred HHHHHHHHHHHhcCC
Q 011468 138 GAAMNIQIALGRANL 152 (485)
Q Consensus 138 ~am~~v~~aL~~~gl 152 (485)
.-++.+|++|++.|+
T Consensus 119 ~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 119 VFIRALYAALKKEGK 133 (253)
T ss_pred HHHHHHHHHHhhcCc
Confidence 779999999987664
No 24
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=57.05 E-value=1.1e+02 Score=30.92 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred ChHHHHHHhcCCceEEEecCcch--------hhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCC
Q 011468 59 DPLVLEALSGSNIGVTVGIPNSL--------LKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSE 130 (485)
Q Consensus 59 d~~vL~A~~~tgi~V~vGv~n~~--------l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~ 130 (485)
++.++.+++..++||++.|.+.. ...+.+++..-.. +.++|..++.. -.+.+|-+-=|.+..
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~-----~~~DGidiDwE~~~~---- 116 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKK-----YGYDGVNIDFENVPP---- 116 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHH-----hCCCcEEEecccCCH----
Confidence 35788888888999998886532 2345555443233 33344443322 123344444355432
Q ss_pred CcHHHHHHHHHHHHHHHHhcCC
Q 011468 131 QFHPFIIGAAMNIQIALGRANL 152 (485)
Q Consensus 131 ~~~~~Lv~am~~v~~aL~~~gl 152 (485)
......+.-|+.+|.+|.+.|+
T Consensus 117 ~d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 117 EDREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHHHHHhhhcCc
Confidence 1245688899999999987764
No 25
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=55.25 E-value=3e+02 Score=30.43 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHhhhhccccCCCCCccEEEEeeecCccccCC-----CC--CCcHHHHHHHHHH-HHHHHHhcCCCCceEEE
Q 011468 93 ESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQS-----YS--EQFHPFIIGAAMN-IQIALGRANLASEVKVV 159 (485)
Q Consensus 93 ~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~-----~~--~~~~~~Lv~am~~-v~~aL~~~gl~~~IkVs 159 (485)
.+.+.+-|..|-.. |..|.+|++.||+.... +. .-.++++..-|++ +.-+|++.+++.++||-
T Consensus 207 A~Y~vkfi~aY~~~----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 207 ADYFVKFIQAYKKE----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp HHHHHHHHHHHHCT----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred HHHHHHHHHHHHHC----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 44566677777554 59999999999998521 11 1236667777876 89999999986567763
No 26
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.04 E-value=43 Score=25.83 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHhcCCceEEEecC
Q 011468 35 PLPPAKVVELLKSNNIAKVKLFDAD-----PLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 35 ~ps~~~vv~llk~~~i~~VRlYd~d-----~~vL~A~~~tgi~V~vGv~ 78 (485)
.-++.++++..+++|++.|=+=|-+ +...+..+..||+|+.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3467899999999999988776665 3455666789999999984
No 27
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.10 E-value=21 Score=34.18 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=30.2
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEE
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVT 74 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~ 74 (485)
+|.|+..|+++||+...++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998878889999999987
No 28
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=51.83 E-value=21 Score=34.36 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEE
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVT 74 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~ 74 (485)
+|.|+..||++||+...++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877889999999997
No 29
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=51.80 E-value=65 Score=31.63 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=26.3
Q ss_pred HHhcCCCCCcEEEeecccCCCCCCC------CCHHHHHHHHHHHHHHHHh
Q 011468 253 LSTVGFPEMDIVVAQIGWPTDGVAN------ATSSTAEIFMKGLINHLRS 296 (485)
Q Consensus 253 ~~k~g~~~~~vvVtETGWPS~G~~~------as~~na~~y~~~lv~~~~s 296 (485)
...+++++..|+.+ |||.|... .+...++..+..++..+..
T Consensus 42 ~~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 34567877666666 99999862 4444455556666766654
No 30
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=49.85 E-value=89 Score=31.87 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHhc--CCceEEEecCc----chhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHH
Q 011468 63 LEALSG--SNIGVTVGIPN----SLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFI 136 (485)
Q Consensus 63 L~A~~~--tgi~V~vGv~n----~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~L 136 (485)
|.+++. .++||++.|.. +....+.++...-++++ ++|..++.. -.+.+|-+==|..... +.....+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~-----~~~DGidiDwE~~~~~--~~d~~~~ 128 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKK-----YGFDGIDIDWEYPGAR--GDDRENY 128 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHH-----cCCCeEEECCcCCCCC--ccHHHHH
Confidence 455554 49999998864 23445555544333333 333333322 1344555433443221 1123568
Q ss_pred HHHHHHHHHHHHhc
Q 011468 137 IGAAMNIQIALGRA 150 (485)
Q Consensus 137 v~am~~v~~aL~~~ 150 (485)
+.-|+.+|++|.+.
T Consensus 129 ~~ll~~lr~~l~~~ 142 (334)
T smart00636 129 TALLKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHHHHh
Confidence 88899999999764
No 31
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=49.58 E-value=99 Score=32.23 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhh
Q 011468 22 GAIGVNWGTNASHPLPPAKVVELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVT 101 (485)
Q Consensus 22 ~~~GinYg~~~~n~ps~~~vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~ 101 (485)
..+|||.-...++ +..++.++.+...+++.|=+..-+|..++.++..|++|+.-|++ ...|..+++..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC-
Confidence 4578887544332 33355666666667777766655676678899999999988863 344555554322
Q ss_pred ccccCCCCCccEEEEeeecCcc
Q 011468 102 RYFSAGHGNGVRFEYVALGDEP 123 (485)
Q Consensus 102 ~~~p~g~~~~~~I~~I~VGNEv 123 (485)
+.| |+.|.|.
T Consensus 125 ----------D~v--VaqG~EA 134 (320)
T cd04743 125 ----------RKF--IFEGREC 134 (320)
T ss_pred ----------CEE--EEecCcC
Confidence 223 7778887
No 32
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=45.51 E-value=1.7e+02 Score=29.86 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=46.6
Q ss_pred HHHHHHhc--CCceEE--E--ecCcc-hhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEE-eeecCccccCCCCCCc
Q 011468 61 LVLEALSG--SNIGVT--V--GIPNS-LLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEY-VALGDEPFLQSYSEQF 132 (485)
Q Consensus 61 ~vL~A~~~--tgi~V~--v--Gv~n~-~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~-I~VGNEvl~~~~~~~~ 132 (485)
..+.+++. .++||+ | |=|+. ....+++++..-.++++ ++..+.....=.|..|.. =-.+.+.. ...
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~-----~~d 128 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGV-----PDK 128 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCC-----HHH
Confidence 34455553 579998 5 32432 35667666655444444 333333220001234431 11122111 112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEcc
Q 011468 133 HPFIIGAAMNIQIALGRANLASEVKVVVP 161 (485)
Q Consensus 133 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~ 161 (485)
...++.-|+.+|++|.+.|+ .+-|+.+
T Consensus 129 ~~~~~~~l~el~~~l~~~~~--~l~~~v~ 155 (318)
T cd02876 129 RKELIQLVIHLGETLHSANL--KLILVIP 155 (318)
T ss_pred HHHHHHHHHHHHHHHhhcCC--EEEEEEc
Confidence 45678899999999988765 3444443
No 33
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=44.88 E-value=90 Score=29.20 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHhcC--CceEEEecCcchhh---hhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHH
Q 011468 62 VLEALSGS--NIGVTVGIPNSLLK---SLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFI 136 (485)
Q Consensus 62 vL~A~~~t--gi~V~vGv~n~~l~---~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~L 136 (485)
-++.++.. |+||++.|....-. .++++....++.++ ++..+... -.+.+|-+==|..... .......+
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~-----~~~DGidiD~E~~~~~-~~~~~~~~ 126 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKT-----YGFDGVDIDWEYPGAA-DNSDRENF 126 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHH-----cCCCceEEeeeCCCCc-CccHHHHH
Confidence 35555554 99999988753211 23444444333322 33333322 1233343333443221 10124679
Q ss_pred HHHHHHHHHHHHhcCC
Q 011468 137 IGAAMNIQIALGRANL 152 (485)
Q Consensus 137 v~am~~v~~aL~~~gl 152 (485)
+..|+.+|++|.+.++
T Consensus 127 ~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 127 ITLLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHHHhcccCc
Confidence 9999999999987654
No 34
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=43.92 E-value=1.1e+02 Score=29.24 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccC-ccccccCCCc
Q 011468 138 GAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTIS-PFISFHQNKN 216 (485)
Q Consensus 138 ~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiy-Pyf~~~~~~~ 216 (485)
.+++.+.+.+...|+.+ |++.+..... ..+-.....++++.+.+.+-|+.+|+- +.+...
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~---- 145 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGGF--------------DPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDA---- 145 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETTC--------------CTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHH----
T ss_pred hHHHHHHHhccccceee-eEecCCCCcc--------------ccccHHHHHHHHHHHHhhccceeeeccccchhhh----
Confidence 57788888888888865 8876533211 111112224889999999988887743 111100
Q ss_pred ccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 011468 217 ISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWPTDGVANATSSTAEIFMKGLINHLR 295 (485)
Q Consensus 217 i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWPS~G~~~as~~na~~y~~~lv~~~~ 295 (485)
..-..+...+...+++ ||+++|++.+.|+| ..+++.++..+.
T Consensus 146 -----------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~------------~~~~~~~~~l~~ 187 (273)
T PF04909_consen 146 -----------------------PSDPADPEELEELLER--FPDLRIILAHLGGP------------FPWWEEALRLLD 187 (273)
T ss_dssp -----------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT------------HHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc------------chhHHHHHHHHH
Confidence 0001122222233444 89999999999999 445555555554
No 35
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.56 E-value=27 Score=37.06 Aligned_cols=32 Identities=22% Similarity=0.495 Sum_probs=29.2
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEE
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVT 74 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~ 74 (485)
+|.||..||++|||. .+|.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 688999999999999 78888889999999997
No 36
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=43.43 E-value=1.9e+02 Score=30.92 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 011468 133 HPFIIGAAMNIQIALGRANL 152 (485)
Q Consensus 133 ~~~Lv~am~~v~~aL~~~gl 152 (485)
.+.++.-|+.+|++|++.++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 45688889999999988765
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=43.13 E-value=49 Score=36.13 Aligned_cols=45 Identities=9% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHhcCCceEEEecCcchhh
Q 011468 39 AKVVELLKSNNIAKVKL-------FD-----ADP-------LVLEALSGSNIGVTVGIPNSLLK 83 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRl-------Yd-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 83 (485)
+|.+++||+.|++.-|+ += .|+ +++.++...||+-+|.+.--+++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 67789999988877765 21 122 57899999999999999754444
No 38
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=41.85 E-value=3.4e+02 Score=26.42 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHHhcCCceEEE-ecCc---chhhhhhhcHHHHHHHHHhhh
Q 011468 36 LPPAKVVELLKSNNIAKVKLFDAD-----------PLVLEALSGSNIGVTV-GIPN---SLLKSLNSSKKAAESWVHDNV 100 (485)
Q Consensus 36 ps~~~vv~llk~~~i~~VRlYd~d-----------~~vL~A~~~tgi~V~v-Gv~n---~~l~~la~~~~~A~~Wv~~~V 100 (485)
|++ ...+.||+.+++.|=.|=++ +.=++.+...|++|+. -... ......+.....|.+-++.+.
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~~~~~~~~~~G~~dA~~A~~~A~ 99 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPIYQGGGYSLDYFGYEQGVKDARDAVAAAR 99 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCccccccCHHHHHHHHHHHHHHHH
Confidence 444 66778888898888777443 1336788889999874 2111 111122233445555566555
Q ss_pred hccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCC
Q 011468 101 TRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLA 153 (485)
Q Consensus 101 ~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 153 (485)
.--.|.| + +.++.|=..... ......++|+++-+.++|...|+.
T Consensus 100 ~lG~p~g----s-~IYfavD~d~~~----~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 100 ALGFPPG----T-IIYFAVDFDALD----DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HcCCCCC----C-EEEEEeecCCCc----chhHHHHHHHHHHHHHHHHhcCCc
Confidence 5445652 4 557887665542 224578999999999999999874
No 39
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=41.69 E-value=37 Score=32.48 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=30.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEE
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVT 74 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~ 74 (485)
+|.|+..|+++||+....+.=+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 688899999999999998877889999999998
No 40
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=41.53 E-value=1.3e+02 Score=33.29 Aligned_cols=187 Identities=16% Similarity=0.104 Sum_probs=97.2
Q ss_pred HHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCC
Q 011468 93 ESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESG 172 (485)
Q Consensus 93 ~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p 172 (485)
...|..-|.+|-.+ ..|.+-+.-||.+.+. ..+.+.++...+.+.+-++..+-+.-|.|+-+.+ -|.. |-
T Consensus 123 kkyvedlVk~yk~~-----ptI~gw~l~Ne~lv~~--p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s--p~~~-~~ 192 (587)
T COG3934 123 KKYVEDLVKPYKLD-----PTIAGWALRNEPLVEA--PISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS--PWPQ-YA 192 (587)
T ss_pred HHHHHHHhhhhccC-----hHHHHHHhcCCccccc--cCChhHHHHHHHHHHHHhhccCCCCeeecCCcCC--cccc-cC
Confidence 34555555566433 5688888899987754 3456788888888888888776554454444333 2322 22
Q ss_pred CCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccccCCCcccccccccccCCCccccCcccccchHHHhHHHHHHH
Q 011468 173 KPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTA 252 (485)
Q Consensus 173 ~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a 252 (485)
|-.+.|..| +=.-|+||+|.. ++-....+..+. ..+|-
T Consensus 193 -pyN~r~~vD-----------------ya~~hLY~hyd~--sl~~r~s~~yg~------------------~~l~i---- 230 (587)
T COG3934 193 -PYNARFYVD-----------------YAANHLYRHYDT--SLVSRVSTVYGK------------------PYLDI---- 230 (587)
T ss_pred -Ccccceeec-----------------cccchhhhhccC--Chhheeeeeecc------------------hhhcc----
Confidence 334444322 236788986653 221111111111 01110
Q ss_pred HHhcCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeeccccccccCCCC---Cc
Q 011468 253 LSTVGFPEMDIVVAQIGWPTDGVANATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDEDQRRTATG---NF 329 (485)
Q Consensus 253 ~~k~g~~~~~vvVtETGWPS~G~~~as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe~wK~~~~~---~~ 329 (485)
-+.+| -++|+.-|-|-|++-+..-|+.. +.+ ..+ +....| . +--..-|+=|-+--. +.++ .-
T Consensus 231 ~~~~g--~~pV~leefGfsta~g~e~s~ay-fiw-~~l---al~~gg------d-GaLiwclsdf~~gsd-d~ey~w~p~ 295 (587)
T COG3934 231 PTIMG--WQPVNLEEFGFSTAFGQENSPAY-FIW-IRL---ALDTGG------D-GALIWCLSDFHLGSD-DSEYTWGPM 295 (587)
T ss_pred chhcc--cceeeccccCCcccccccccchh-hhh-hhh---HHhhcC------C-ceEEEEecCCccCCC-CCCCccccc
Confidence 01123 37999999999987655433222 112 122 111111 0 112333444432111 1122 34
Q ss_pred ccceeeeecCCceeeee
Q 011468 330 ERHWGVFTFDGQAKYHL 346 (485)
Q Consensus 330 E~~wGlf~~d~~~ky~l 346 (485)
|-.|||.+.|+.+|++.
T Consensus 296 el~fgiIradgpek~~a 312 (587)
T COG3934 296 ELEFGIIRADGPEKIDA 312 (587)
T ss_pred cceeeeecCCCchhhhH
Confidence 78899999999999865
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=38.67 E-value=3.3e+02 Score=25.39 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCEEEE----------ecCC--------------hHHHHHHhcCCceEEEecCcch--hhhhhhcHHHH-
Q 011468 40 KVVELLKSNNIAKVKL----------FDAD--------------PLVLEALSGSNIGVTVGIPNSL--LKSLNSSKKAA- 92 (485)
Q Consensus 40 ~vv~llk~~~i~~VRl----------Yd~d--------------~~vL~A~~~tgi~V~vGv~n~~--l~~la~~~~~A- 92 (485)
+..+.||+.||+.|=+ |.++ ..+|+++...||||.+|++-+. -.. .+.+..
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~--~~~~~~~ 101 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQ--GDLDWEA 101 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhc--cCHHHHH
Confidence 4566778888877722 2121 2468888899999999997431 111 121111
Q ss_pred --HHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhc
Q 011468 93 --ESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRA 150 (485)
Q Consensus 93 --~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~ 150 (485)
..-|...+..-|.+ ...+.+--+-.|.-... ...++..+.+.+.|++.
T Consensus 102 ~~~~~v~~el~~~yg~----h~sf~GWYip~E~~~~~------~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGH----HPSFYGWYIPYEIDDYN------WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcC----CCCCceEEEecccCCcc------cchHHHHHHHHHHHHHh
Confidence 11133333332322 14677777788875432 12355555555666544
No 42
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.84 E-value=2e+02 Score=27.52 Aligned_cols=35 Identities=3% Similarity=0.044 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCEEEEecCCh---------HHHHHHhcCCceE
Q 011468 39 AKVVELLKSNNIAKVKLFDADP---------LVLEALSGSNIGV 73 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd~d~---------~vL~A~~~tgi~V 73 (485)
..+++.|.+.|.++|=+..... ...++++..|+++
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~ 141 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYEC 141 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 4456667667888777664321 1245667788776
No 43
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.76 E-value=38 Score=35.97 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=29.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEEE
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVTV 75 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~v 75 (485)
+|.|+..|+++|||.. +|.=+.++.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 6889999999999999 89888899999999973
No 44
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.58 E-value=2.4e+02 Score=30.74 Aligned_cols=131 Identities=9% Similarity=0.103 Sum_probs=69.6
Q ss_pred CceeEEecCCCCCCCC----HHHHHHHHHh-CCCCEEEEecCCh-----HHHHHHhcC-CceEEEecCcchhhhhhhcHH
Q 011468 22 GAIGVNWGTNASHPLP----PAKVVELLKS-NNIAKVKLFDADP-----LVLEALSGS-NIGVTVGIPNSLLKSLNSSKK 90 (485)
Q Consensus 22 ~~~GinYg~~~~n~ps----~~~vv~llk~-~~i~~VRlYd~d~-----~vL~A~~~t-gi~V~vGv~n~~l~~la~~~~ 90 (485)
..+|.|-+.||.+++. -.+.++.|.+ .|+.+||+=..+| ++++|++.+ .+-=.+-+|- ++-+.
T Consensus 194 ~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsGsd--- 267 (437)
T COG0621 194 VLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSGSD--- 267 (437)
T ss_pred EEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccCCH---
Confidence 3468888888877753 3333333322 5688888876654 567777654 2211233331 11100
Q ss_pred HHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccC
Q 011468 91 AAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSE 170 (485)
Q Consensus 91 ~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s 170 (485)
.|++ .+.|. .+.++.+.-++.+|++... +-++|.. +. .
T Consensus 268 --------~ILk--------------------~M~R~---yt~e~~~~~i~k~R~~~Pd------~~i~tDi----IV-G 305 (437)
T COG0621 268 --------RILK--------------------RMKRG---YTVEEYLEIIEKLRAARPD------IAISTDI----IV-G 305 (437)
T ss_pred --------HHHH--------------------HhCCC---cCHHHHHHHHHHHHHhCCC------ceEeccE----EE-E
Confidence 0000 12232 2456778888888877644 4445432 22 2
Q ss_pred CCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccc
Q 011468 171 SGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFI 209 (485)
Q Consensus 171 ~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 209 (485)
||. |-.+.....++|+.+.+ +=.+|+++|=
T Consensus 306 FPg--------ETeedFe~tl~lv~e~~-fd~~~~F~YS 335 (437)
T COG0621 306 FPG--------ETEEDFEETLDLVEEVR-FDRLHVFKYS 335 (437)
T ss_pred CCC--------CCHHHHHHHHHHHHHhC-CCEEeeeecC
Confidence 661 22234566778876544 5567888873
No 45
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=37.53 E-value=64 Score=33.30 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCCCCcEEEeecccCCCCCCC--CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeeccccc-cccC
Q 011468 248 TLVTALSTVGFPEMDIVVAQIGWPTDGVAN--ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDED-QRRT 324 (485)
Q Consensus 248 av~~a~~k~g~~~~~vvVtETGWPS~G~~~--as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe~-wK~~ 324 (485)
.+...|+++.--+++|.|||.-=....... ...+.++.+++.+++.+.+.. . . . -..+.+..+.|.. |.+.
T Consensus 221 ~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~-~-~--~--v~git~Wg~~D~~sW~~~ 294 (320)
T PF00331_consen 221 QIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP-P-A--A--VEGITWWGFTDGYSWRPD 294 (320)
T ss_dssp HHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT-H-C--T--EEEEEESSSBTTGSTTGG
T ss_pred HHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC-c-c--C--CCEEEEECCCCCCcccCC
Confidence 334444444444589999997444333221 346678889999999887621 0 0 1 1235556666654 7654
Q ss_pred CCCCcccceeeeecCCceee
Q 011468 325 ATGNFERHWGVFTFDGQAKY 344 (485)
Q Consensus 325 ~~~~~E~~wGlf~~d~~~ky 344 (485)
.. -.+=+||+.|.+||-
T Consensus 295 ~~---~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 295 TP---PDRPLLFDEDYQPKP 311 (320)
T ss_dssp HS---EG--SSB-TTSBB-H
T ss_pred CC---CCCCeeECCCcCCCH
Confidence 11 122379999999984
No 46
>PLN02998 beta-glucosidase
Probab=36.83 E-value=63 Score=35.67 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=42.7
Q ss_pred CCCCcEEEeecccCCCCCCC----CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeecccc-ccccCCCCCcccc
Q 011468 258 FPEMDIVVAQIGWPTDGVAN----ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDE-DQRRTATGNFERH 332 (485)
Q Consensus 258 ~~~~~vvVtETGWPS~G~~~----as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe-~wK~~~~~~~E~~ 332 (485)
|++.+|+|||-|+....+.. -=++--+.+++.+.+.+. .|-| -.-+|.-++.|- .|.. +.++.
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~------V~GY~~WSl~DnfEW~~----Gy~~R 457 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSD------VKGYFQWSLMDVFELFG----GYERS 457 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCC------EEEEeeccchhhhchhc----cccCc
Confidence 55558999999998653211 122333444555555543 3321 234667788873 3553 36899
Q ss_pred eeeeecCCc
Q 011468 333 WGVFTFDGQ 341 (485)
Q Consensus 333 wGlf~~d~~ 341 (485)
|||++-|..
T Consensus 458 fGLv~VD~~ 466 (497)
T PLN02998 458 FGLLYVDFK 466 (497)
T ss_pred cceEEECCC
Confidence 999988754
No 47
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=36.76 E-value=57 Score=33.98 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=50.1
Q ss_pred HHHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHH
Q 011468 61 LVLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAA 140 (485)
Q Consensus 61 ~vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am 140 (485)
.||+++..+|-.+.+|=. ..+.. +++.|..|+...++.++ .+|.+|+--|.-... .
T Consensus 176 ~VLkp~idsGkik~~Ge~--~~d~W--~ps~Aq~~men~lta~~-------~~vdaVvA~nDgtag-----------G-- 231 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQ--WTDGW--LPSNAQQIMENLLTANY-------NDIDAVVAPNDGTAG-----------G-- 231 (341)
T ss_pred HHHHHHhhCCceEEeeec--ccccc--CHHHHHHHHHHHHhccc-------CceeEEEcCCCchhH-----------H--
Confidence 688888887765556642 23344 46788899988887774 569888776653321 1
Q ss_pred HHHHHHHHhcCCCCceEEEc
Q 011468 141 MNIQIALGRANLASEVKVVV 160 (485)
Q Consensus 141 ~~v~~aL~~~gl~~~IkVsT 160 (485)
+-++|++.||++.++||=
T Consensus 232 --aI~aL~a~Gl~g~vpVsG 249 (341)
T COG4213 232 --AIAALKAQGLAGKVPVSG 249 (341)
T ss_pred --HHHHHHhcccCCCCcccC
Confidence 224788899998888653
No 48
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=36.41 E-value=5.5e+02 Score=27.24 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccc
Q 011468 132 FHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISF 211 (485)
Q Consensus 132 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~ 211 (485)
..+....+++.+|+.. .| |.+++.. +. .+| . |-.+.+...++|+.+.+ +-.+++|||--+
T Consensus 271 ~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P--g------ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP--G------ESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC--C------CCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 4567777777777632 22 4454432 21 244 1 22355788999998765 456788876543
No 49
>PRK09989 hypothetical protein; Provisional
Probab=35.45 E-value=4.3e+02 Score=25.77 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=38.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEe---cCC-hHHHHHHhcCCceEEE
Q 011468 24 IGVNWGTNASHPLPPAKVVELLKSNNIAKVKLF---DAD-PLVLEALSGSNIGVTV 75 (485)
Q Consensus 24 ~GinYg~~~~n~ps~~~vv~llk~~~i~~VRlY---d~d-~~vL~A~~~tgi~V~v 75 (485)
..+|.+....++ |-.+.++.+++.|++.|-+. +.+ .++.+.++.+||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456777765555 45788899999999999984 334 3566788899999885
No 50
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=34.20 E-value=4e+02 Score=32.26 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=58.4
Q ss_pred ceeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHhcCCceEEEecCcch-----hhhhhhcH
Q 011468 23 AIGVNWGTNAS---HPLPPAKV---VELLKSNNIAKVKLFD--ADPLVLEALSGSNIGVTVGIPNSL-----LKSLNSSK 89 (485)
Q Consensus 23 ~~GinYg~~~~---n~ps~~~v---v~llk~~~i~~VRlYd--~d~~vL~A~~~tgi~V~vGv~n~~-----l~~la~~~ 89 (485)
..|+|+-.... ...+++++ ++++|+.|+..||+-. .++..++.+-..||-|+--++.+. ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 46888754322 23455554 5677899999999943 357889998899998886653210 01112222
Q ss_pred H---HHHHHHHhhhhccccCCCCCccEEEEeeecCccc
Q 011468 90 K---AAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPF 124 (485)
Q Consensus 90 ~---~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl 124 (485)
. +..+-+++.|.....+ -.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNH-----PSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNH-----PSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CEEEEEeCccCCC
Confidence 1 2222244445544332 6788999999974
No 51
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.77 E-value=51 Score=34.63 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCEEEEecCC-hHHHHHHhcCCceEE
Q 011468 41 VVELLKSNNIAKVKLFDAD-PLVLEALSGSNIGVT 74 (485)
Q Consensus 41 vv~llk~~~i~~VRlYd~d-~~vL~A~~~tgi~V~ 74 (485)
-++.|+..|+++|||...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688899999999999999 887889999999986
No 52
>PRK08815 GTP cyclohydrolase; Provisional
Probab=33.59 E-value=54 Score=34.94 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=32.0
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecC
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
+|.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6888999999999999999888899999999974343
No 53
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.17 E-value=56 Score=34.98 Aligned_cols=37 Identities=32% Similarity=0.482 Sum_probs=32.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecC
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
+|.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788999999999999999888899999999984443
No 54
>PLN02849 beta-glucosidase
Probab=32.33 E-value=86 Score=34.67 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHhcCCceEEEecCcchhh
Q 011468 39 AKVVELLKSNNIAKVKL-------FD-----ADP-------LVLEALSGSNIGVTVGIPNSLLK 83 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRl-------Yd-----~d~-------~vL~A~~~tgi~V~vGv~n~~l~ 83 (485)
.|.+++||+.|++.-|+ +- .|+ +++.++...||+-+|.+.--+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 46789999988877764 31 132 57899999999999999644443
No 55
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=32.25 E-value=5.2e+02 Score=25.78 Aligned_cols=155 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHh--cCCceEEEec--CcchhhhhhhcHHHHHHHH---HhhhhccccCCCCCccEEEEeeecCccccCCCCCCc
Q 011468 60 PLVLEALS--GSNIGVTVGI--PNSLLKSLNSSKKAAESWV---HDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQF 132 (485)
Q Consensus 60 ~~vL~A~~--~tgi~V~vGv--~n~~l~~la~~~~~A~~Wv---~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~ 132 (485)
+.-+.+++ +.++||++.| |+..-.....+...-..|+ .+.+..++.. -.+.+|=+==|-....
T Consensus 58 ~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~-----~~fDGiDiDwE~~~~d----- 127 (253)
T cd06544 58 PEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQT-----YNLDGIDIDYEHFPAD----- 127 (253)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHH-----hCCCceeeecccCCcC-----
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEcccccccc-ccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccccc
Q 011468 133 HPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTF-LSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFISF 211 (485)
Q Consensus 133 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l-~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~~ 211 (485)
....+.-|+.+|++|++.++ +.+-+.-..... ...|- +.+.++++++ -.--|-|+..
T Consensus 128 ~~~f~~ll~~l~~~l~~~~~---lt~a~vap~~~~~~~~y~------------~~~~~~~d~i-------d~~~~qfy~~ 185 (253)
T cd06544 128 PDTFVECIGQLITELKNNGV---IKVASIAPSEDAEQSHYL------------ALYNAYGDYI-------DYVNYQFYNY 185 (253)
T ss_pred HHHHHHHHHHHHHHhhhcCC---eEEEEecCCccccccccH------------HHHHHhhCce-------eEEEhhhhCC
Q ss_pred cCCCcccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccCCCCCC
Q 011468 212 HQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWPTDGVA 276 (485)
Q Consensus 212 ~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWPS~G~~ 276 (485)
..... .+++...+....+ +++..+|+| |.|+.+..
T Consensus 186 ~~~~~--------------------------~~~~~~~~~~~~~-~~p~~Kv~l---Gl~a~~~~ 220 (253)
T cd06544 186 GVPTT--------------------------VAKYVEFYDEVAN-NYPGKKVLA---SFSTDGED 220 (253)
T ss_pred CCCCC--------------------------HHHHHHHHHHHHh-CCCcccEEE---EEecCCCc
No 56
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.89 E-value=60 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHhcCCceEE
Q 011468 41 VVELLKSNNIAKVKLFDADPLVLEALSGSNIGVT 74 (485)
Q Consensus 41 vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~ 74 (485)
-++.|+..|+++||+...+|.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3678899999999999999988889999999997
No 57
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=31.84 E-value=2.3e+02 Score=28.95 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=41.5
Q ss_pred cCCceEEEecCc--c--hhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCC-C-----CCCcHHHHH
Q 011468 68 GSNIGVTVGIPN--S--LLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQS-Y-----SEQFHPFII 137 (485)
Q Consensus 68 ~tgi~V~vGv~n--~--~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~-~-----~~~~~~~Lv 137 (485)
+.++||++.|.. + ....++++...-++.+ ++|..++.. -.+.+|-+==|-.... . .......++
T Consensus 82 ~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi-~siv~~l~~-----~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~ 155 (322)
T cd06548 82 NPHLKILLSIGGWTWSGGFSDAAATEASRAKFA-DSAVDFIRK-----YGFDGIDIDWEYPGSGGAPGNVARPEDKENFT 155 (322)
T ss_pred CCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHH-HHHHHHHHh-----cCCCeEEECCcCCCCCCCCCCCCChhHHHHHH
Confidence 467898887742 2 3445655554433333 334444332 2344554433322110 0 012356788
Q ss_pred HHHHHHHHHHHhcC
Q 011468 138 GAAMNIQIALGRAN 151 (485)
Q Consensus 138 ~am~~v~~aL~~~g 151 (485)
.-|+.+|++|.+.+
T Consensus 156 ~ll~~Lr~~l~~~~ 169 (322)
T cd06548 156 LLLKELREALDALG 169 (322)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 58
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.70 E-value=60 Score=35.44 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=31.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEec
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGI 77 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv 77 (485)
++.|+..|+++|||...+|.=+.++.+.||+|.=-+
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~v 408 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 678899999999999999988899999999997333
No 59
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=96 Score=27.75 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecC
Q 011468 40 KVVELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 40 ~vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
.++++|+.+|++.|=+-..-+..+.+|++.||+|+.+..
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888889999999999999999976
No 60
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.67 E-value=63 Score=36.12 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=32.8
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecC
Q 011468 41 VVELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 41 vv~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
.++.|+..||++|||...+|.=+.++++.||+|.=-+|
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36788999999999999999989999999999984443
No 61
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=30.14 E-value=5.9e+02 Score=25.76 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred EEEEecCChHHHHHHh------cCCceEEEecCc-----chhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeec
Q 011468 52 KVKLFDADPLVLEALS------GSNIGVTVGIPN-----SLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALG 120 (485)
Q Consensus 52 ~VRlYd~d~~vL~A~~------~tgi~V~vGv~n-----~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VG 120 (485)
.+++-+.+...+..+. +.++||++.|.- +....++++...-+++++ ++..++.. -.+.+|-+=
T Consensus 42 ~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~-siv~~l~~-----~~fDGidiD 115 (299)
T cd02879 42 EVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFIN-SSIKVARK-----YGFDGLDLD 115 (299)
T ss_pred EEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHH-HHHHHHHH-----hCCCceeec
Q ss_pred CccccCCCCCCcHHHHHHHHHHHHHHHH-------hcCCCCceEEEccccccc----cccCCCCCCCcccCcchhHHHHH
Q 011468 121 DEPFLQSYSEQFHPFIIGAAMNIQIALG-------RANLASEVKVVVPCSFDT----FLSESGKPSGGHFRPDLNKTMIE 189 (485)
Q Consensus 121 NEvl~~~~~~~~~~~Lv~am~~v~~aL~-------~~gl~~~IkVsT~~~~~~----l~~s~p~Ps~g~F~~~~~~~~~~ 189 (485)
=|-... ......++.-|+.+|++|. +.++ .+.+..+..... ....|+ .+.|.+
T Consensus 116 WE~P~~---~~d~~n~~~ll~elr~~l~~~~~~~~~~~~--~ls~av~~~~~~~~~~~~~~yd-----------~~~l~~ 179 (299)
T cd02879 116 WEFPSS---QVEMENFGKLLEEWRAAVKDEARSSGRPPL--LLTAAVYFSPILFLSDDSVSYP-----------IEAINK 179 (299)
T ss_pred ccCCCC---hhHHHHHHHHHHHHHHHHHHHhhccCCCcE--EEEeecccchhhccccccccCC-----------HHHHHh
Q ss_pred HHHHHhhcCCCceeccCccccccCCCcccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCcEEEe
Q 011468 190 LLEFLSKHHSPFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVA 266 (485)
Q Consensus 190 ~ldfL~~t~sp~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVt 266 (485)
.+||+ .|=.|=|+.....+...-.-.++.+.... .+|..+....+.|.|..+|+++
T Consensus 180 ~vD~i-------~vMtYD~~g~~~~~~~~~~a~l~~~~~~~--------------~~~~~v~~~~~~g~p~~KlvlG 235 (299)
T cd02879 180 NLDWV-------NVMAYDYYGSWESNTTGPAAALYDPNSNV--------------STDYGIKSWIKAGVPAKKLVLG 235 (299)
T ss_pred hCCEE-------EEEeecccCCCCCCCCCCCCcCCCCCCCC--------------CHHHHHHHHHHcCCCHHHEEEE
No 62
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=29.69 E-value=5.6e+02 Score=25.72 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=39.7
Q ss_pred hcCCceEEEecCcc-----hhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHH
Q 011468 67 SGSNIGVTVGIPNS-----LLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAM 141 (485)
Q Consensus 67 ~~tgi~V~vGv~n~-----~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~ 141 (485)
+..|+||++.|... ....+..+...... +.++|..++.. -.+.+|-+==|.............+..-|+
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~-----y~~DGidiD~e~~~~~~~~~~~~~~~~~l~ 143 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKK-----YGFDGIDIDWEYPSSSGDPQDKDNYTAFLK 143 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHH-----HT-SEEEEEESSTTSTSSTTHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcc-----cCcceeeeeeeeccccccchhhhhhhhhhh
Confidence 35699998877543 34444444332222 33333333322 134455443343322100124577888899
Q ss_pred HHHHHHHhc
Q 011468 142 NIQIALGRA 150 (485)
Q Consensus 142 ~v~~aL~~~ 150 (485)
.+|.+|++.
T Consensus 144 ~L~~~l~~~ 152 (343)
T PF00704_consen 144 ELRKALKRA 152 (343)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhccc
Confidence 999999885
No 63
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=29.57 E-value=1.1e+02 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHHhcCCceEEE
Q 011468 39 AKVVELLKSNNIAKVKLFD--AD---PLVLEALSGSNIGVTV 75 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd--~d---~~vL~A~~~tgi~V~v 75 (485)
+++.+.++..|++.|+++- .. ..+|++|+..|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3455667778999999983 32 4689999999998653
No 64
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=28.91 E-value=1.4e+02 Score=33.18 Aligned_cols=72 Identities=11% Similarity=0.287 Sum_probs=49.0
Q ss_pred cCCCCCcEEEeecccCCCCCCC----------CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEEeecccc-ccccC
Q 011468 256 VGFPEMDIVVAQIGWPTDGVAN----------ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYIYSLLDE-DQRRT 324 (485)
Q Consensus 256 ~g~~~~~vvVtETGWPS~G~~~----------as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~F~lFDe-~wK~~ 324 (485)
-.|+|.+|.|+|-|-+...+.. .=.+..+.|++.+.+.+.. .|. + -.-+|..+|-|- .|..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv----n--v~GYf~WSLmDnfEw~~- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV----N--VKGYFVWSLLDNFEWLD- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC----c--eeeEEEeEcccchhhhc-
Confidence 3588999999999998875442 3345566777777776653 221 1 234888898874 4664
Q ss_pred CCCCcccceeeeec
Q 011468 325 ATGNFERHWGVFTF 338 (485)
Q Consensus 325 ~~~~~E~~wGlf~~ 338 (485)
+..-.||||+-
T Consensus 475 ---Gy~~RFGlyyV 485 (524)
T KOG0626|consen 475 ---GYKVRFGLYYV 485 (524)
T ss_pred ---CcccccccEEE
Confidence 35788999985
No 65
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=27.56 E-value=6.7e+02 Score=27.36 Aligned_cols=130 Identities=9% Similarity=0.165 Sum_probs=70.6
Q ss_pred HHHHHh--cCCceEEEec--Ccc--hhhhhhhcHHHHHHHHHhhhhcc--ccCCCCCccEEEEeeecCccccCC-CCCCc
Q 011468 62 VLEALS--GSNIGVTVGI--PNS--LLKSLNSSKKAAESWVHDNVTRY--FSAGHGNGVRFEYVALGDEPFLQS-YSEQF 132 (485)
Q Consensus 62 vL~A~~--~tgi~V~vGv--~n~--~l~~la~~~~~A~~Wv~~~V~~~--~p~g~~~~~~I~~I~VGNEvl~~~-~~~~~ 132 (485)
.|..++ ..++|+.+.| |.+ ....++++.+.-++.++..|.-. ++= .|+.|..=-=||+--... .....
T Consensus 116 ~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~F---DGVDIDWEYP~~~~~~~~~~~~~d 192 (441)
T COG3325 116 ALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGF---DGVDIDWEYPGSGGDAGNCGRPKD 192 (441)
T ss_pred HHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCC---CceeeccccCCCCCCCCCCCCccc
Confidence 455555 3556666555 542 34455556544444444443221 110 135555543344333211 01234
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--ceEEEccccccccccCCCCCCCcccCcch-hHHHHHHHHHHhhcCCCceeccCccc
Q 011468 133 HPFIIGAAMNIQIALGRANLAS--EVKVVVPCSFDTFLSESGKPSGGHFRPDL-NKTMIELLEFLSKHHSPFFVTISPFI 209 (485)
Q Consensus 133 ~~~Lv~am~~v~~aL~~~gl~~--~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~-~~~~~~~ldfL~~t~sp~~vNiyPyf 209 (485)
.+..+--|+.||++|.+++.++ +..+|++.... ...++ .+ ...|.+.|||+. |=.|-|+
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as----------~~~l~-~~~~~~~~~~vDyiN-------iMTYDf~ 254 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPAS----------KDKLE-GLNHAEIAQYVDYIN-------IMTYDFH 254 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEEecCCc----------hhhhh-cccHHHHHHHHhhhh-------eeeeecc
Confidence 6788999999999999999876 57777764321 11122 22 245888999873 3456665
Q ss_pred ccc
Q 011468 210 SFH 212 (485)
Q Consensus 210 ~~~ 212 (485)
...
T Consensus 255 G~W 257 (441)
T COG3325 255 GAW 257 (441)
T ss_pred ccc
Confidence 443
No 66
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.26 E-value=3.5e+02 Score=23.56 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHhCCCCEEEEecCCh----------HHHHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhccccCCCCCc
Q 011468 42 VELLKSNNIAKVKLFDADP----------LVLEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRYFSAGHGNG 111 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~----------~vL~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~ 111 (485)
++-|.++|.++|-+..... ...+++++.|++...-.....-.... .......|+++. .|+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~pd----- 70 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RPD----- 70 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SSS-----
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CCc-----
Confidence 3456677899988887431 24567888999855433221100010 111223366543 233
Q ss_pred cEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCC--CCceEEEccccccccccCCCCCCCcccCcchhH
Q 011468 112 VRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANL--ASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNK 185 (485)
Q Consensus 112 ~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl--~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~ 185 (485)
+|+++|+.+.. . +..+|.+.|+ .++|.|-+-+......... |....++.+..+
T Consensus 71 ----aii~~~~~~a~--------~-------~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~--p~it~i~~~~~~ 125 (160)
T PF13377_consen 71 ----AIICSNDRLAL--------G-------VLRALRELGIRVPQDISVVSFDDSPLLEFFS--PPITTIDQDPRE 125 (160)
T ss_dssp ----EEEESSHHHHH--------H-------HHHHHHHTTSCTTTTSEEEEESSSGHHHCSS--STSEEEEE-HHH
T ss_pred ----EEEEcCHHHHH--------H-------HHHHHHHcCCcccccccEEEecCcHHHHHHc--CCCceecCCHHH
Confidence 67777776532 2 2345556665 4667777655444333223 444555544433
No 67
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=27.17 E-value=5.3e+02 Score=31.26 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=57.6
Q ss_pred ceeEEecCCCC---CCCCHHH---HHHHHHhCCCCEEEEecC--ChHHHHHHhcCCceEEEecCcc--h------hhhhh
Q 011468 23 AIGVNWGTNAS---HPLPPAK---VVELLKSNNIAKVKLFDA--DPLVLEALSGSNIGVTVGIPNS--L------LKSLN 86 (485)
Q Consensus 23 ~~GinYg~~~~---n~ps~~~---vv~llk~~~i~~VRlYd~--d~~vL~A~~~tgi~V~vGv~n~--~------l~~la 86 (485)
..|+|+-.... ...++++ .+++||+.|+..||+-.- ++..+.++-..||-|+.-++.+ . ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 46888654321 1234444 356789999999998532 4678899989999988754211 0 00111
Q ss_pred hcH---HHHHHHHHhhhhccccCCCCCccEEEEeeecCccc
Q 011468 87 SSK---KAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPF 124 (485)
Q Consensus 87 ~~~---~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl 124 (485)
.++ ++..+-+++.|.....+ -.|..=++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNH-----PSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNH-----PSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCC-----CEEEEEECccCcc
Confidence 222 11223345555554332 6788889999974
No 68
>PLN03059 beta-galactosidase; Provisional
Probab=27.09 E-value=1.1e+03 Score=27.98 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=69.4
Q ss_pred HHHHHHHhCCCCEEEEecC-----------C-------hHHHHHHhcCCceEEEecC-------c-----------chhh
Q 011468 40 KVVELLKSNNIAKVKLFDA-----------D-------PLVLEALSGSNIGVTVGIP-------N-----------SLLK 83 (485)
Q Consensus 40 ~vv~llk~~~i~~VRlYd~-----------d-------~~vL~A~~~tgi~V~vGv~-------n-----------~~l~ 83 (485)
+.++.+|..|++.|-+|-. | ..-|+.+++.|+.|+|=.. + ..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4566778899999999843 1 1347788899999997441 1 1111
Q ss_pred hhhhcH---HHHHHHHHhhhh-----cc-ccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCC
Q 011468 84 SLNSSK---KAAESWVHDNVT-----RY-FSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLAS 154 (485)
Q Consensus 84 ~la~~~---~~A~~Wv~~~V~-----~~-~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~ 154 (485)
-=..++ ++.++|+..-+. ++ +.+ |-.|..+=|-||.= .+....-..=-.+|+.+++.+++.|++
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~----GGPIImvQIENEYG--s~~~~~~~~d~~Yl~~l~~~~~~~Gi~- 215 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQ----GGPIILSQIENEYG--PVEWEIGAPGKAYTKWAADMAVKLGTG- 215 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecC----CCcEEEEEeccccc--ceecccCcchHHHHHHHHHHHHHcCCC-
Confidence 001122 355677654221 11 233 46899999999953 211111112357899999999999984
Q ss_pred ceEEEcccc
Q 011468 155 EVKVVVPCS 163 (485)
Q Consensus 155 ~IkVsT~~~ 163 (485)
|+.-|.+.
T Consensus 216 -VPl~t~dg 223 (840)
T PLN03059 216 -VPWVMCKQ 223 (840)
T ss_pred -cceEECCC
Confidence 66655543
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=27.01 E-value=1.1e+02 Score=32.99 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 011468 133 HPFIIGAAMNIQIALGRANLA 153 (485)
Q Consensus 133 ~~~Lv~am~~v~~aL~~~gl~ 153 (485)
....+.-++.+.+.|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 356677778889999999994
No 70
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=26.91 E-value=2.4e+02 Score=30.19 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHHHHHhcCCceEEEecCcchh----------------hhhhhc-HHHHHHHHHhhhhccccCCCCCccEEEEeeecCcc
Q 011468 61 LVLEALSGSNIGVTVGIPNSLL----------------KSLNSS-KKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEP 123 (485)
Q Consensus 61 ~vL~A~~~tgi~V~vGv~n~~l----------------~~la~~-~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEv 123 (485)
.+|++++..|++.+++..|.-. ..|..+ .++-...+. .|..++.. .|.+|++|.-=||+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa-~Vv~~~~~---~GI~f~~IsP~NEP 183 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLA-DVVKHYKK---WGINFDYISPFNEP 183 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHH-HHHHHHHC---TT--EEEEE--S-T
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHH-HHHHHHHh---cCCccceeCCcCCC
Confidence 4788888899999888754211 112111 112222333 33444432 25899999999999
Q ss_pred ccCCCCC------CcHHHHHHHHHHHHHHHHhcCCCCceEEEcccccccc
Q 011468 124 FLQSYSE------QFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTF 167 (485)
Q Consensus 124 l~~~~~~------~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l 167 (485)
-..+... ...++....|+.++.+|++.||..+|-+.-+-.+..+
T Consensus 184 ~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l 233 (384)
T PF14587_consen 184 QWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYL 233 (384)
T ss_dssp TS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGG
T ss_pred CCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHH
Confidence 8764211 2467788889999999999999876655555455544
No 71
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.95 E-value=2.5e+02 Score=27.10 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhcCCCCCcEEEeec---ccCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCccEEEeecccc
Q 011468 244 LSYDTLVTALSTVGFPEMDIVVAQI---GWPTDGVANATSSTAEIFMKGLINHLRSR-SGTPLRPRNPPIETYIYSLLDE 319 (485)
Q Consensus 244 a~~Dav~~a~~k~g~~~~~vvVtET---GWPS~G~~~as~~na~~y~~~lv~~~~s~-~GTP~rp~~~~~~~y~F~lFDe 319 (485)
+.+|.++.+.++.| +.|+|.=- ||...++........+.++..+.+.+... ++ .-.+..|+++||
T Consensus 62 ~~ld~~v~~a~~~g---i~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~--------~~~v~~~el~NE 130 (281)
T PF00150_consen 62 ARLDRIVDAAQAYG---IYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKD--------NPPVVGWELWNE 130 (281)
T ss_dssp HHHHHHHHHHHHTT----EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT--------TTTTEEEESSSS
T ss_pred HHHHHHHHHHHhCC---CeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCC--------CCcEEEEEecCC
Confidence 34455555556655 67766533 48555555555555555555544444321 11 123558899999
Q ss_pred cccc
Q 011468 320 DQRR 323 (485)
Q Consensus 320 ~wK~ 323 (485)
+-..
T Consensus 131 P~~~ 134 (281)
T PF00150_consen 131 PNGG 134 (281)
T ss_dssp GCST
T ss_pred cccc
Confidence 8654
No 72
>PRK07198 hypothetical protein; Validated
Probab=25.32 E-value=58 Score=34.90 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=32.3
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHhcCCceEEEecC
Q 011468 42 VELLKSNNIAKV-KLFDADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 42 v~llk~~~i~~V-RlYd~d~~vL~A~~~tgi~V~vGv~ 78 (485)
+|.|+..||++| |+...++.=+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578888999999 9999999888899999999984443
No 73
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.02 E-value=5.3e+02 Score=27.74 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCccc
Q 011468 132 FHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFI 209 (485)
Q Consensus 132 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf 209 (485)
..+.++.+++.+|++ +. .+.+++.. +. .+| . +-.+.+.+.++|+.+.+ +-.+++|+|-
T Consensus 270 ~~~~~~~~v~~lr~~----~~--~i~i~~d~----Iv-G~P--g------Et~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 270 RREKYLERIAEIREA----LP--DVVLSTDI----IV-GFP--G------ETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred CHHHHHHHHHHHHHh----CC--CcEEEEeE----EE-ECC--C------CCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 456777777777765 32 24455432 22 244 1 11245778899987664 4456777753
No 74
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.74 E-value=1.5e+02 Score=26.30 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEec----------CC---hHHHHHHhcCCceEEE
Q 011468 39 AKVVELLKSNNIAKVKLFD----------AD---PLVLEALSGSNIGVTV 75 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd----------~d---~~vL~A~~~tgi~V~v 75 (485)
+++++..+..|++.|+++- .- ...|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4455666778999988883 22 3689999999999753
No 75
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=24.17 E-value=9.5e+02 Score=26.16 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=82.3
Q ss_pred EeeecCccccCCC-CCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHH
Q 011468 116 YVALGDEPFLQSY-SEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFL 194 (485)
Q Consensus 116 ~I~VGNEvl~~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL 194 (485)
..=|=||+=.... ......+-....+...++|++.. ..+||+-|-. ..+ ....+...++|+
T Consensus 158 ~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~----~~~------------~~~~~~~~l~~~ 219 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAF----AWA------------YDEWCEDFLEFC 219 (486)
T ss_dssp EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEE----ETT-------------THHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCccc----ccc------------HHHHHHHHHHHH
Confidence 3457899654321 11224456677777888888765 4588887610 000 013466777888
Q ss_pred hhcCC---CceeccCccccccCCCcccccccccccCCCccccCcccccchHHHhHHHHHHHHHhcCCCCCcEEEeecccC
Q 011468 195 SKHHS---PFFVTISPFISFHQNKNISLDFALFKETAHPHKDSHKTYKNSFDLSYDTLVTALSTVGFPEMDIVVAQIGWP 271 (485)
Q Consensus 195 ~~t~s---p~~vNiyPyf~~~~~~~i~ldyA~F~~~~~~~~d~~~~y~nlfda~~Dav~~a~~k~g~~~~~vvVtETGWP 271 (485)
.+.+. ++..|.||+-......+ -.+.. + .....+++ ++..+...+...++|++++.++| |.
T Consensus 220 ~~~~~~~DfiS~H~y~~~~~~~~~~--~~~~~-------~----~~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n 283 (486)
T PF01229_consen 220 KGNNCPLDFISFHSYGTDSAEDINE--NMYER-------I----EDSRRLFP-ELKETRPIINDEADPNLPLYITE--WN 283 (486)
T ss_dssp HHCT---SEEEEEEE-BESESE-SS---EEEE-------B------HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EE
T ss_pred hcCCCCCCEEEEEecccccccccch--hHHhh-------h----hhHHHHHH-HHHHHHHHHhhccCCCCceeecc--cc
Confidence 76553 33556665321100000 00000 0 00011122 22233344556688999999999 88
Q ss_pred CCCCCC----CCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccEEE---e-eccccccccCCCCCcccceeeeecCCcee
Q 011468 272 TDGVAN----ATSSTAEIFMKGLINHLRSRSGTPLRPRNPPIETYI---Y-SLLDEDQRRTATGNFERHWGVFTFDGQAK 343 (485)
Q Consensus 272 S~G~~~----as~~na~~y~~~lv~~~~s~~GTP~rp~~~~~~~y~---F-~lFDe~wK~~~~~~~E~~wGlf~~d~~~k 343 (485)
+.-.+. -|.-+|+-..++++..... .++.|- | ..|.|+-.+. ..+-.-|||+.-+|-+|
T Consensus 284 ~~~~~~~~~~dt~~~aA~i~k~lL~~~~~-----------~l~~~sywt~sD~Fee~~~~~--~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 284 ASISPRNPQHDTCFKAAYIAKNLLSNDGA-----------FLDSFSYWTFSDRFEENGTPR--KPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SSTT-GGGGSHHHHHHHHH-HHHHGGG-----------T-SEEEES-SBS---TTSS-S--SSSSS-S-SEECCCEE-
T ss_pred cccCCCcchhccccchhhHHHHHHHhhhh-----------hhhhhhccchhhhhhccCCCC--CceecchhhhhccCCCc
Confidence 766542 5555665555556555321 234332 1 2333332221 12455589999999766
No 76
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.50 E-value=1.9e+02 Score=28.27 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=49.0
Q ss_pred cCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHhc--CCceEEEecCcchhhhhhhcHHHH
Q 011468 20 LAGAIGVNWGTNASHPLPPAKVVELLKSNNIAKVKLFDAD-----PLVLEALSG--SNIGVTVGIPNSLLKSLNSSKKAA 92 (485)
Q Consensus 20 ~~~~~GinYg~~~~n~ps~~~vv~llk~~~i~~VRlYd~d-----~~vL~A~~~--tgi~V~vGv~n~~l~~la~~~~~A 92 (485)
.-..+||-|-...-.++. .--+++|||+- ..+..+... .|+=++.-|-|+. +-...
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~------Sfeni 103 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEK------SFENI 103 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchH------HHHHH
Confidence 345577777654434443 23467788885 356665543 4555555555542 34556
Q ss_pred HHHHHhhhhccccCCCCCccEEEEeeecCcccc
Q 011468 93 ESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFL 125 (485)
Q Consensus 93 ~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~ 125 (485)
..|++ +|..+.++ .|.-|.|||-.=.
T Consensus 104 ~~W~~-~I~e~a~~------~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 104 RNWIK-NIDEHASD------DVVKILVGNKCDL 129 (207)
T ss_pred HHHHH-HHHhhCCC------CCcEEEeeccccc
Confidence 67876 56777654 5778999997643
No 77
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.20 E-value=8.2e+02 Score=24.68 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHH---HHHhcCCceEEEecCcch---hhhhhhcHHHHHHHHHhhh
Q 011468 34 HPLPPAKVVELLKSNNIAKVKLFDAD-------PLVL---EALSGSNIGVTVGIPNSL---LKSLNSSKKAAESWVHDNV 100 (485)
Q Consensus 34 n~ps~~~vv~llk~~~i~~VRlYd~d-------~~vL---~A~~~tgi~V~vGv~n~~---l~~la~~~~~A~~Wv~~~V 100 (485)
+.++|.+..+.|+..|+++|-+-.+. ..++ ..++..--++.+|-|-=. ..+-..+... +.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~----va~aL 131 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA----VAEAL 131 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH----HHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHH----HHHHH
Confidence 57899999999999999999998775 2333 344444458999987310 0001112222 33334
Q ss_pred hccccCCCCCccEEEEeeecCccccCCCCCCcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccC
Q 011468 101 TRYFSAGHGNGVRFEYVALGDEPFLQSYSEQFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFR 180 (485)
Q Consensus 101 ~~~~p~g~~~~~~I~~I~VGNEvl~~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~ 180 (485)
...++.. +.+..+..+-=||+-. ....-. .++..|++.++. +|-|+|.+. +|
T Consensus 132 ~~~~~~~-~~~~a~vlmGHGt~h~--------an~~Y~---~l~~~l~~~~~~-~v~vgtvEG-------~P-------- 183 (262)
T PF06180_consen 132 AEEFPKK-RKDEAVVLMGHGTPHP--------ANAAYS---ALQAMLKKHGYP-NVFVGTVEG-------YP-------- 183 (262)
T ss_dssp HCCS-TT--TTEEEEEEE---SCH--------HHHHHH---HHHHHHHCCT-T-TEEEEETTS-------SS--------
T ss_pred HHhcccc-CCCCEEEEEeCCCCCC--------ccHHHH---HHHHHHHhCCCC-eEEEEEeCC-------CC--------
Confidence 4434410 0125565555566542 222333 445778887764 588999753 44
Q ss_pred cchhHHHHHHHHHHhhcCCCceeccCcccc
Q 011468 181 PDLNKTMIELLEFLSKHHSPFFVTISPFIS 210 (485)
Q Consensus 181 ~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~ 210 (485)
++ ..++..|.+.+ +=-|.+.||.-
T Consensus 184 -~~----~~vi~~L~~~g-~k~V~L~PlMl 207 (262)
T PF06180_consen 184 -SL----EDVIARLKKKG-IKKVHLIPLML 207 (262)
T ss_dssp -BH----HHHHHHHHHHT--SEEEEEEESS
T ss_pred -CH----HHHHHHHHhcC-CCeEEEEeccc
Confidence 22 34455555433 22488889875
No 78
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=21.90 E-value=98 Score=27.01 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCC---CCEEEEecCChHHH
Q 011468 38 PAKVVELLKSNN---IAKVKLFDADPLVL 63 (485)
Q Consensus 38 ~~~vv~llk~~~---i~~VRlYd~d~~vL 63 (485)
|+++..+|+... -+++||||.|..+|
T Consensus 3 pe~a~plLrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 3 PERARPLLRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred HHHHHHHHHHhCCCCCceEEEECCCCCEE
Confidence 567777776643 48999999986543
No 79
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=21.90 E-value=6.2e+02 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHhCC-CCEEEEec---------CChHHHHHHhcCCceEEEecC
Q 011468 41 VVELLKSNN-IAKVKLFD---------ADPLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 41 vv~llk~~~-i~~VRlYd---------~d~~vL~A~~~tgi~V~vGv~ 78 (485)
+++.|++.+ +++||+.. .++++++.++++|..+.|++-
T Consensus 158 ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~ 205 (321)
T TIGR03822 158 IMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALH 205 (321)
T ss_pred HHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEec
Confidence 344444432 56677753 134667777777777777764
No 80
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.70 E-value=8.6e+02 Score=24.75 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=38.7
Q ss_pred HHHHhcCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccccCCC-CCCcHHHHHHHHH
Q 011468 63 LEALSGSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPFLQSY-SEQFHPFIIGAAM 141 (485)
Q Consensus 63 L~A~~~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl~~~~-~~~~~~~Lv~am~ 141 (485)
++.++..|+||+|.|.-..-....++...+++ +.+++..++.+ -.+.+|=+==|.-.... .......++..|+
T Consensus 66 i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~-fa~sl~~~~~~-----~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk 139 (312)
T cd02871 66 IKALQAKGKKVLISIGGANGHVDLNHTAQEDN-FVDSIVAIIKE-----YGFDGLDIDLESGSNPLNATPVITNLISALK 139 (312)
T ss_pred HHHHHHCCCEEEEEEeCCCCccccCCHHHHHH-HHHHHHHHHHH-----hCCCeEEEecccCCccCCcHHHHHHHHHHHH
Confidence 45667789999998853221111223322222 33344443322 12444443334321110 0112467888888
Q ss_pred HHHHHHH
Q 011468 142 NIQIALG 148 (485)
Q Consensus 142 ~v~~aL~ 148 (485)
.+|.++.
T Consensus 140 ~lr~~~~ 146 (312)
T cd02871 140 QLKDHYG 146 (312)
T ss_pred HHHHHcC
Confidence 8888764
No 81
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.30 E-value=1.9e+02 Score=26.38 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHhcCCceEEE
Q 011468 39 AKVVELLKSNNIAKVKLF--D--------AD---PLVLEALSGSNIGVTV 75 (485)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--d--------~d---~~vL~A~~~tgi~V~v 75 (485)
+++++.++..|++.|+++ + .. ..+|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 345566777899999888 3 33 3689999999999753
No 82
>CHL00041 rps11 ribosomal protein S11
Probab=20.93 E-value=2e+02 Score=25.39 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHhcCCceEE
Q 011468 40 KVVELLKSNNIAKVKLFD--AD---PLVLEALSGSNIGVT 74 (485)
Q Consensus 40 ~vv~llk~~~i~~VRlYd--~d---~~vL~A~~~tgi~V~ 74 (485)
++.+.+++.|++.|+++= .. ..+|++|+..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345666778999999883 22 468999999999875
No 83
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=20.92 E-value=2.3e+02 Score=25.51 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHhcCCceEEEecC
Q 011468 37 PPAKVVELLKSNNIAKVKLFDA---------------------D--PLVLEALSGSNIGVTVGIP 78 (485)
Q Consensus 37 s~~~vv~llk~~~i~~VRlYd~---------------------d--~~vL~A~~~tgi~V~vGv~ 78 (485)
.|++.++.||..+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3677888888888888888642 1 2567899999999998874
No 84
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=2.1e+02 Score=26.87 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=37.8
Q ss_pred EEEEecCCh-HHHHHH-----h-cCCceEEEecCcchhhhhhhcHHHHHHHHHhhhhccccCCCCCccEEEEeeecCccc
Q 011468 52 KVKLFDADP-LVLEAL-----S-GSNIGVTVGIPNSLLKSLNSSKKAAESWVHDNVTRYFSAGHGNGVRFEYVALGDEPF 124 (485)
Q Consensus 52 ~VRlYd~d~-~vL~A~-----~-~tgi~V~vGv~n~~l~~la~~~~~A~~Wv~~~V~~~~p~g~~~~~~I~~I~VGNEvl 124 (485)
.+.|||+.. ++++.+ + ..|+-+|--+.|++ +.++.++|+.. |..| .+ .++.-|+|||.-=
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~tq-Ikty-sw-----~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWITQ-IKTY-SW-----DNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHHH-heee-ec-----cCceEEEEecccC
Confidence 355678763 444322 2 35777888888764 33456778753 4333 44 7899999999763
No 85
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=20.46 E-value=1.7e+02 Score=28.26 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHhcCCceEEEecCcc
Q 011468 42 VELLKSNNIAKVKLFDADPLVLEALSGSNIGVTVGIPNS 80 (485)
Q Consensus 42 v~llk~~~i~~VRlYd~d~~vL~A~~~tgi~V~vGv~n~ 80 (485)
++.|+..||++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578888999999999999988888899999998777653
No 86
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=20.34 E-value=1.6e+02 Score=25.67 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCEEEEe--cCC---hHHHHHHhcCCceEEE
Q 011468 40 KVVELLKSNNIAKVKLF--DAD---PLVLEALSGSNIGVTV 75 (485)
Q Consensus 40 ~vv~llk~~~i~~VRlY--d~d---~~vL~A~~~tgi~V~v 75 (485)
.+.+.++..|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34556677899999988 333 3689999999998754
No 87
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.29 E-value=1.1e+03 Score=25.33 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCCCceEEEccccccccccCCCCCCCcccCcchhHHHHHHHHHHhhcCCCceeccCcccc
Q 011468 131 QFHPFIIGAAMNIQIALGRANLASEVKVVVPCSFDTFLSESGKPSGGHFRPDLNKTMIELLEFLSKHHSPFFVTISPFIS 210 (485)
Q Consensus 131 ~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~p~Ps~g~F~~~~~~~~~~~ldfL~~t~sp~~vNiyPyf~ 210 (485)
...+....+++.+|+++ ..+.+++. ++. .+| - |-.+.+...++|+.+.+ +-.+++++|--
T Consensus 279 ~~~~~~~~~i~~lr~~~------~~i~i~~d----~Iv-G~P--g------ET~ed~~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 279 YTREYYLELVEKIKSNI------PDVAITTD----IIV-GFP--G------ETEEDFEETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred CCHHHHHHHHHHHHHhC------CCCEEEEE----EEE-ECC--C------CCHHHHHHHHHHHHhcC-CCcccceEecC
Confidence 34667777777777653 12445442 222 244 1 22245778889987664 44567777643
Done!