BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011469
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 184
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 3 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 179
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 239
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 240 QGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 4 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 180
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 240
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 241 QGNIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/254 (55%), Positives = 170/254 (66%), Gaps = 4/254 (1%)
Query: 74 ADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCS 133
AD+I LPGQP VDFD Y+GY+TVD AGR+LFY E+P+ + PLVLWLNGGPGCS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 134 SLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGD 193
S+ YGA EELG FRV G L NEY WN VANVLFL++PAGVGFSY+NTSSD GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 194 NNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGI 253
N TA DSY FL WFERFP YK RDF+I GESYAGHYVP+L + L + +INLKG
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPEL--SQLVHRSKNPVINLKGF 184
Query: 254 AIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATG-QLSTSCDQYQTQGVRE 312
+GN IDD G F+F+W H + SD+T + + C + S +CD E
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 YGQIDLYNVYAPLC 326
G ID+Y++Y P+C
Sbjct: 245 QGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 169/262 (64%), Gaps = 5/262 (1%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKP-LVLWLNGGPG 131
E D+I LPGQP GV F Y GY+T+D GRAL+Y+F E+ + + LVLWLNGGPG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPG 65
Query: 132 CSSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNP 191
CSS+G GAM+ELG FRV+++G++L NEYAWN AN+LF E+PAGVGFSYSNTSSD S
Sbjct: 66 CSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLS-M 124
Query: 192 GDNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLK 251
GD+ A+D+YTFLV WFERFP Y R+F+I GES GH++PQL+ + + IN +
Sbjct: 125 GDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQ 182
Query: 252 GIAIGNAWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLST-SCDQYQTQGV 310
G+ + + +D+ GMF+ +W H L SDET + K C + T C + + +
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKAL 242
Query: 311 REYGQIDLYNVYAPLCKSSAPP 332
E G I+ Y +Y P C P
Sbjct: 243 AEQGNINPYTIYTPTCDREPSP 264
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 211 bits (537), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 224/456 (49%), Gaps = 62/456 (13%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGC 132
+ D+I+ LPG + F QY+GYL + L Y+FVES + + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 133 SSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPG 192
SSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-- 117
Query: 193 DNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKG 252
D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQG 173
Query: 253 IAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQ 306
+A+GN + F + H L +S +T+ C+F + C
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNL 232
Query: 307 TQGVREYGQ--IDLYNVYAPLCKSSAPPP------------------------------- 333
+ R G +++YN+YAP C P
Sbjct: 233 QEVARIVGNSGLNIYNLYAP-CAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALL 291
Query: 334 PTAGVIREYDPCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTDSPSTVLP 387
+ +R PC++ S YLN V+ AL+ W C+ +L + ++
Sbjct: 292 RSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNS 351
Query: 388 TIQQLIAS-GIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YADG--EVGG 441
+L++S ++ +Y+GD D + +++LN +E PW Y D ++ G
Sbjct: 352 QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAG 411
Query: 442 YVLGYKGVIFTTVRGAGHLVPTYQPQRALIMISSFL 477
+V + + F T++GAGH+VPT +P A M S FL
Sbjct: 412 FVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 149/267 (55%), Gaps = 19/267 (7%)
Query: 73 EADKIKTLPGQPEGVDFDQYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGC 132
+ D+I+ LPG + F QY+GYL + L Y+FVES + + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 133 SSLGYGAMEELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPG 192
SSL G + E GPF V DG TL N Y+WN +ANVL+LE+PAGVGFSYS+ +N
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN-- 119
Query: 193 DNNTAEDSYTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTIINLKG 252
D A+ ++ L ++F FP+YKN F+TGESYAG Y+P LA ++ + +NL+G
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS----MNLQG 175
Query: 253 IAIGNAWIDDNLCTKGMFDFFWTHAL------NSDETNAAINKYCDFATGQLSTSCDQYQ 306
+A+GN + F + H L +S +T+ C+F + C
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNK-DLECVTNL 234
Query: 307 TQGVREYGQ--IDLYNVYAPLCKSSAP 331
+ R G +++YN+YAP C P
Sbjct: 235 QEVARIVGNSGLNIYNLYAP-CAGGVP 260
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 342 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 393
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 394 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 453
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 454 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 483
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 342 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 393
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 394 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 453
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 454 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 483
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 342 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 393
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 394 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 453
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 454 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 483
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 8/150 (5%)
Query: 342 YDPCSDKYVNSYLNLAEVQAALHAKHT-----NWSTCSDLT---WTDSPSTVLPTIQQLI 393
YDPC+++Y +Y N +VQ ALHA T W+TCSD W D+P ++LP ++LI
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 394 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTT 453
A+G+R+W++SGDTD VP+T++RYSI AL LP T+WYPWY D EVGG+ YKG+ +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 454 VRGAGHLVPTYQPQRALIMISSFLEGKLPP 483
VRGAGH VP ++P++AL++ FL+GK P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 103/154 (66%), Gaps = 11/154 (7%)
Query: 342 YDPCSDKYVNSYLNLAEVQAALHAKHTN-----WSTCSDLT---WTDSPSTVLPTIQQLI 393
YDPC+ +YLNL EVQ ALHA + W+ CS+ W + +LP ++LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 394 ASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWY---ADGEVGGYVLGYKGVI 450
+G+RVW+YSGDTD VPV+S+R S+ AL LPV+T+WYPWY + EVGG+ + Y+G+
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 451 FTTVRGAGHLVPTYQPQRALIMISSFLEGKLPPS 484
+ TVRGAGHLVP ++P +A ++ FL+G+ P+
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 190/435 (43%), Gaps = 79/435 (18%)
Query: 91 QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAMEELGPFRVNS 150
QY GYL V+ + + F++ ES + P++LWLNGGPGCSSL G ELGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 151 DGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AEDSYTFLVNW 207
D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGKDVYNFLELF 126
Query: 208 FERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWIDDNLC 265
F++FP+Y N+ DF I GESYAGHY+P A ILS NL + IGN D
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN--FNLTSVLIGNGLTD---- 180
Query: 266 TKGMFDFFWTHALNS--------DETNAAINKYCDFATGQLSTSCDQYQTQGVREYGQID 317
++++ A E +A+ + G L SC Y +Q V
Sbjct: 181 PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLG-LIESC--YDSQSVWSCVPAT 237
Query: 318 LYNVYAPLCKSSAPPPPTAGVIREYDPCSD-----------KYVNSYLNLAEVQAALHAK 366
+Y C ++ P YD D + ++ YLN V+ A+ A+
Sbjct: 238 IY------CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 367 HTNWSTC------SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSIN 420
++ +C + L D + L+ + + +Y+GD D + N
Sbjct: 292 VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---------FICN 342
Query: 421 ALNLPVETAWYPWYAD----------------GEVGGYVLGYKGVIFTTVRGAGHLVPTY 464
L T PW D EV G V YK + V GH+VP
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFD 402
Query: 465 QPQRALIMISSFLEG 479
P+ AL M++ ++ G
Sbjct: 403 VPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 188/435 (43%), Gaps = 79/435 (18%)
Query: 91 QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAMEELGPFRVNS 150
QY GYL V+ + + F++ ES + P++LWLNGGPGCSSL G LGP +
Sbjct: 16 QYTGYLDVEDE-DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 151 DGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNT---AEDSYTFLVNW 207
D K + N Y+WN+ A V+FL+ P VGFSYS +S G +NT +D Y FL +
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSS------GVSNTVAAGKDVYNFLELF 126
Query: 208 FERFPQYKNR--DFFITGESYAGHYVPQLAYTILSKNTSKTIINLKGIAIGNAWIDDNLC 265
F++FP+Y N+ DF I G SYAGHY+P A ILS NL + IGN D
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN--FNLTSVLIGNGLTD---- 180
Query: 266 TKGMFDFFWTHALNS--------DETNAAINKYCDFATGQLSTSCDQYQTQGVREYGQID 317
++++ A E +A+ + G L SC Y +Q V
Sbjct: 181 PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLG-LIESC--YDSQSVWSCVPAT 237
Query: 318 LYNVYAPLCKSSAPPPPTAGVIREYDPCSD-----------KYVNSYLNLAEVQAALHAK 366
+Y C ++ P YD D + ++ YLN V+ A+ A+
Sbjct: 238 IY------CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 367 HTNWSTC------SDLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSIN 420
++ +C + L D + L+ + + +Y+GD D + N
Sbjct: 292 VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD---------FICN 342
Query: 421 ALNLPVETAWYPWYAD----------------GEVGGYVLGYKGVIFTTVRGAGHLVPTY 464
L T PW D EV G V YK + V GH+VP
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFD 402
Query: 465 QPQRALIMISSFLEG 479
P+ AL M++ ++ G
Sbjct: 403 VPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/433 (29%), Positives = 192/433 (44%), Gaps = 71/433 (16%)
Query: 91 QYAGYLTV-----DPKAGRALFYYFVESPQSSSS----KPLVLWLNGGPGCSSLGYGAME 141
+AG++ + D + L Y+F + + S+ +PL++WLNGGPGCSS+ GA+
Sbjct: 29 MHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALV 87
Query: 142 ELGPFRVNSDGKTLYRNEYAWNNVANVLFLETPAGVGFSYSNTSSDYSNPGDNNTAEDS- 200
E GPFRVNSDGK LY NE +W + ++LF++ P G GFS + D N ED
Sbjct: 88 ESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVE-QNKDEGKIDKNKFDEDLE 145
Query: 201 ------YTFLVNWFERFPQYKNRDFFITGESYAGHYVPQLAYTILSKNTSKTI----INL 250
FL N+F+ FP+ R ++GESYAG Y+P A IL+ N I +L
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205
Query: 251 KGIAIGNAWIDDNLCTKGMFDFFWTHALNSDETN----AAINKYCDFATGQLSTSCDQ-- 304
K + IGN WID N + F L DE+N N + + S S D+
Sbjct: 206 KALLIGNGWIDPNTQSLSYLPFAMEKKL-IDESNPNFKHLTNAHENCQNLINSASTDEAA 264
Query: 305 ---YQ------------TQGVREYGQIDLYNVYAPLCKSSAPPPPTAGVIREYDPCSDKY 349
YQ T+ + G D N+Y K S P+ G+ P +
Sbjct: 265 HFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSY---PSCGMNW---PKDISF 318
Query: 350 VNSYLNLAEVQAALHA---KHTNWSTCSDLTWTDSPSTV-LPTIQQ---LIASGIRVWIY 402
V+ + + V +LH K +W C++ T + + P+I L+ SGI + ++
Sbjct: 319 VSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLF 378
Query: 403 SGDTDGRVPVTSSRYSINALN------LPVETAWYPWYADG-------EVGGYVLGYKGV 449
+GD D +I+ L + + W E GYV + +
Sbjct: 379 NGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNL 438
Query: 450 IFTTVRGAGHLVP 462
F +V A H+VP
Sbjct: 439 TFVSVYNASHMVP 451
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 344 PCSDKYVNS-YLNLAEVQAALHAKHT--NWSTCS---DLTWTDSPSTVLPTIQQLIAS-G 396
PC++ S YLN V+ AL+ W C+ +L + ++ +L++S
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQK 63
Query: 397 IRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPW---YADG--EVGGYVLGYKGVIF 451
++ +Y+GD D + +++LN +E PW Y D ++ G+V + + F
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAF 123
Query: 452 TTVRGAGHLVPTYQPQRALIMISSFLEGK 480
T++GAGH+VPT +P A M S FL +
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 431
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 432 P 432
P
Sbjct: 71 P 71
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 431
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLXTPSRAALLTGRLPVRMGMY 70
Query: 432 P 432
P
Sbjct: 71 P 71
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 431
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 432 P 432
P
Sbjct: 71 P 71
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 431
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLATPSRAALLTGRLPVRMGMY 70
Query: 432 P 432
P
Sbjct: 71 P 71
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPV---TSSRYSINALNLPVETAWY 431
DL PS+ P + QL A G+R TD VPV T SR ++ LPV Y
Sbjct: 17 DLGCYGHPSSTTPNLDQLAAGGLRF------TDFYVPVSLSTPSRAALLTGRLPVRMGMY 70
Query: 432 P 432
P
Sbjct: 71 P 71
>pdb|1MJT|A Chain A, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
pdb|1MJT|B Chain B, Crystal Structure Of Sanos, A Bacterial Nitric Oxide
Synthase Oxygenase Protein, In Complex With Nad+ And
Seitu
Length = 347
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 39/200 (19%)
Query: 258 AWIDDNLCTKGMFDFFWTHALNSDETNAAINKYCDFATGQLSTSCDQYQTQGVREYGQID 317
AW + N C +F W +LN + ++ +S + TQ E G++
Sbjct: 56 AWRNSNRCIGRLF---WD-SLNVIDARDVTDE------ASFLSSITYHITQATNE-GKLK 104
Query: 318 LY-NVYAPLCKSSAPPPPTAGVIRE--YDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCS 374
Y +YAP P +IR YD C D AE + A H W
Sbjct: 105 PYITIYAP---KDGPKIFNNQLIRYAGYDNCGDP--------AEKEVTRLANHLGWKGKG 153
Query: 375 DLTWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRY-SINALNLPVETAWYPW 433
+ VLP I QL ++ + Y VP+ + Y + LNL W
Sbjct: 154 ------TNFDVLPLIYQLPNESVKFYEYPTSLIKEVPIEHNHYPKLRKLNL-------KW 200
Query: 434 YADGEVGGYVLGYKGVIFTT 453
YA + L G+++ T
Sbjct: 201 YAVPIISNMDLKIGGIVYPT 220
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF DQYA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFNDQYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDFD-QYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD QYA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDQYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1DQZ|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
pdb|1DQZ|B Chain B, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis
Length = 280
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 334 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 393
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 140 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 197
Query: 394 ASGIRVWIYSGD 405
A+ R+W+Y G+
Sbjct: 198 ANNTRIWVYCGN 209
>pdb|1DQY|A Chain A, Crystal Structure Of Antigen 85c From Mycobacterium
Tuberculosis With Diethyl Phosphate Inhibitor
Length = 283
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 334 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 393
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 394 ASGIRVWIYSGD 405
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 410 VPVTSSRYSINALNLPVETAWYPWYADGEVGGYVLGYKGVIFTTVRGAGHLVPTY 464
+ +S YS A N P+E + P+ G+ GG +LG G F + G + Y
Sbjct: 1 MATIASEYSSEASNTPIEHQFNPY---GDNGGTILGIAGEDFAVLAGDTRNITDY 52
>pdb|1VA5|A Chain A, Antigen 85c With Octylthioglucoside In Active Site
pdb|1VA5|B Chain B, Antigen 85c With Octylthioglucoside In Active Site
Length = 303
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 334 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 393
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 394 ASGIRVWIYSGD 405
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|3HRH|A Chain A, Crystal Structure Of Antigen 85c And Glycerol
pdb|3HRH|B Chain B, Crystal Structure Of Antigen 85c And Glycerol
Length = 303
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 334 PTAGVIREYDPCSDKYVNSYLNLAEVQAALHAKHTNWSTCSDLTWTDSPSTVLPTIQQLI 393
P A + + S+ + + + LA + + ++ W SD W + V I +L+
Sbjct: 143 PYAASLSGFLNPSEGWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMV--QIPRLV 200
Query: 394 ASGIRVWIYSGD 405
A+ R+W+Y G+
Sbjct: 201 ANNTRIWVYCGN 212
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFNDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFADEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 85 EGVDFD----QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDDYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDF-DQYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDF D+YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFEDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 85 EGVDFD----QYAGYLTVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 120 DGVDFDDAYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 177
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 178 DVSDKF------------DYAWN 188
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H
At 1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 85 EGVDFD-QYAGYL---TVDPKAGRALFYYFVESPQSSSSKPLVLWLNGGPGCSSLGYGAM 140
+GVDFD +YA Y T P + F + V + +++ ++ N GP S L YG +
Sbjct: 125 DGVDFDDEYAEYGNNGTAQPN--DSSFVHLVTALRANMPDKIISLYNIGPAASRLSYGGV 182
Query: 141 EELGPFRVNSDGKTLYRNEYAWN 163
+ F +YAWN
Sbjct: 183 DVSDKF------------DYAWN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,757,189
Number of Sequences: 62578
Number of extensions: 720764
Number of successful extensions: 1714
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 55
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)