BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011472
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 184 VKKTIDYNSMMNVY--------YQTGNYKKLDSLMHEMEEKGIDC--------DKYTFSI 227
VK T+DY NVY +QT + +++ S + +M+ G D K+
Sbjct: 124 VKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLT 183
Query: 228 LLSACAAASDGEGIDKIVAMMEADRGVV--LDWTVYATAAS-GYVKAGLSDKALAVLRKS 284
LL+A ++ M A GV+ L V+ +AA+ G VK + +AV
Sbjct: 184 LLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLR 243
Query: 285 EVLM-MHN 291
VLM +HN
Sbjct: 244 SVLMILHN 251
>pdb|1UMY|A Chain A, Bhmt From Rat Liver
pdb|1UMY|B Chain B, Bhmt From Rat Liver
pdb|1UMY|C Chain C, Bhmt From Rat Liver
pdb|1UMY|D Chain D, Bhmt From Rat Liver
Length = 407
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319
V+A GYVKAG AV V +H +F RA +V++ +
Sbjct: 30 VFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRA-------------GSNVMQTFTF 76
Query: 320 YKQNLKVYNRG 330
Y K+ NRG
Sbjct: 77 YASEDKLENRG 87
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine
S-Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319
V+A GYVKAG AV V +H +F RA +V++ +
Sbjct: 30 VFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRA-------------GSNVMQTFTF 76
Query: 320 YKQNLKVYNRG 330
Y K+ NRG
Sbjct: 77 YASEDKLENRG 87
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 368 HLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427
+L +AY ++G KA Y+ L N + WY Y + +K +E +KAL L
Sbjct: 48 NLGNAYYKQGDYQKA-IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 368 HLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427
+L +AY ++G KA Y+ L N WY + Y + +K +E +KAL L
Sbjct: 14 NLGNAYYKQGDYQKA-IEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 KLKLPSVYIALLNAYACAKSAEKAE---IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
+ K+P++Y A+ + A A KAE II + G V IDYN + +V Y
Sbjct: 309 QTKIPNIY-AIGDVVAGPMLAHKAEDEGIICVEGMAGGAVH--IDYNCVPSVIYTHPEVA 365
Query: 205 KLDSLMHEMEEKGID--CDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
+ +++E+GI+ K+ F+ S +D +G+ KI+ DR
Sbjct: 366 WVGKSEEQLKEEGIEYKVGKFPFA-ANSRAKTNADTDGMVKILGQKSTDR 414
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 KLKLPSVYIALLNAYACAKSAEKAE---IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
+ K+P++Y A+ + A A KAE II + G V IDYN + +V Y
Sbjct: 309 QTKIPNIY-AIGDVVAGPMLAHKAEDEGIICVEGMAGGAVH--IDYNCVPSVIYTHPEVA 365
Query: 205 KLDSLMHEMEEKGID--CDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
+ +++E+GI+ K+ F+ S +D +G+ KI+ DR
Sbjct: 366 WVGKSEEQLKEEGIEYKVGKFPFA-ANSRAKTNADTDGMVKILGQKSTDR 414
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 KLKLPSVYIALLNAYACAKSAEKAE---IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
+ K+P++Y A+ + A A KAE II + G V IDYN + +V Y
Sbjct: 330 QTKIPNIY-AIGDVVAGPMLAHKAEDEGIICVEGMAGGAVH--IDYNCVPSVIYTHPEVA 386
Query: 205 KLDSLMHEMEEKGID--CDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
+ +++E+GI+ K+ F+ S +D +G+ KI+ DR
Sbjct: 387 WVGKSEEQLKEEGIEYKVGKFPFA-ANSRAKTNADTDGMVKILGQKSTDR 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,546,990
Number of Sequences: 62578
Number of extensions: 543901
Number of successful extensions: 1462
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 21
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)