BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011472
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/421 (41%), Positives = 264/421 (62%), Gaps = 2/421 (0%)
Query: 53 LYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK 112
L R ++ GDP+ S++ +LD W+++G + +L IIK R + RFSHALQIS WM++
Sbjct: 40 LQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEH 99
Query: 113 SNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAE 172
++ DVAIRLDLIAKV G+ +A +F +P + + +Y ALLN YA K KAE
Sbjct: 100 RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAE 159
Query: 173 IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232
+ Q+M++ G +K + YN M+N+Y +TG Y ++ L+ EME++ + D +T + L A
Sbjct: 160 QVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAY 219
Query: 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK 292
+ SD EG++K + EAD+G+ LDW YA A+GY+KAGL++KAL +LRKSE ++ K
Sbjct: 220 SVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQK 279
Query: 293 FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFE 352
AY+ +++ Y A G K++V R+W YK+ YN GYI VIS+LLK D +E EKI E
Sbjct: 280 RKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIME 339
Query: 353 EWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412
EWE+ + DIRIP+ LI YC++G++ KAE ++ + + TW +A GY
Sbjct: 340 EWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAG 399
Query: 413 QSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISA 472
+ EK VE K+A+ + + G W+P + L +C+ Y + +RD+EG ++LL+ + IS
Sbjct: 400 KMEKAVEKWKRAIEVSKPG--WRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISY 457
Query: 473 D 473
D
Sbjct: 458 D 458
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 222/413 (53%), Gaps = 2/413 (0%)
Query: 53 LYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK 112
LY +SP+GDP S+ P L WV+ G+ + + +L I+ R KRF HAL++S WM +
Sbjct: 27 LYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNET 86
Query: 113 SNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAE 172
V +P + A+ LDLI +V G A YF + E+ K Y ALLN Y ++ EK+
Sbjct: 87 GVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSL 146
Query: 173 IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232
+ ++M++ G V ++ YN++M +Y G ++K+ ++ EM+E+ + D Y++ I ++A
Sbjct: 147 LHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAF 206
Query: 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK 292
A D E I + ME + + +DW YA AA Y+ G D+A+ +L+ SE + K
Sbjct: 207 GAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSEN-RLEKK 265
Query: 293 FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK-VYNRGYICVISSLLKFDGMESAEKIF 351
Y+ +IT YA G K +VLR+W K K N+ Y+ V+ SL+K D + AE++
Sbjct: 266 DGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVL 325
Query: 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411
EW+S C+D R+PN +I Y + + KAE ++ RG +W L+AT Y +
Sbjct: 326 TEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEK 385
Query: 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLL 464
E + MK AL + +W+P + + L + E ++ + F+ L
Sbjct: 386 GTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASL 438
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 144/428 (33%), Positives = 238/428 (55%), Gaps = 10/428 (2%)
Query: 53 LYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK 112
+Y+ +S M P +L+QW + GR L +L ++K+ R YKR + AL++ WM +
Sbjct: 69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNR 128
Query: 113 SN-FVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKA 171
F L+ +D AI+LDLI KV+GI A +F +PE K VY +LLNAY AKS EKA
Sbjct: 129 GERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKA 188
Query: 172 EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231
E ++ MRD+G + +N MM +Y Y K+D+++ EM++K I D Y+++I LS+
Sbjct: 189 EALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSS 248
Query: 232 CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV-LMMH 290
C + E ++ + M++D + +WT ++T A+ Y+K G ++KA LRK E +
Sbjct: 249 CGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGR 308
Query: 291 NKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL-KVYNRGYICVISSLLKFDGMESAEK 349
N+ Y ++++ Y + GNK ++ RVW YK + + N GY ++SSL++ +E AEK
Sbjct: 309 NRI--PYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEK 366
Query: 350 IFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYL 409
++EEW +D RIPN L++AY + L AE L G +P+ TW ++A G+
Sbjct: 367 VYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHT 426
Query: 410 QNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469
+ + + ++ A E + W+P L+ ++E D+ + ++LL
Sbjct: 427 RKRCISEALTCLRNAFS-AEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQ--- 482
Query: 470 ISADLQDR 477
S DL+D+
Sbjct: 483 -SGDLEDK 489
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 242/454 (53%), Gaps = 34/454 (7%)
Query: 19 LGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEG 78
+ ++ D S + S A S +E+ LRK P S+ LL + ++ G
Sbjct: 23 VSSLADGSDTSSVANRNSLKEI---LRKNG--------------PRRSVTSLLQERIDSG 65
Query: 79 RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQA 138
+ + +LR+I K+ R+ ALQ+ WM + + + D+A+RLDLI K G++Q
Sbjct: 66 HAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQG 125
Query: 139 ASYFNCVPEKLKLPSV--------YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDY 190
YF EKL SV Y+ LL AY K ++AE +M+++ G + +
Sbjct: 126 EEYF----EKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPF 181
Query: 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250
N MM +Y +G Y+K+ ++ M+ I + ++++ ++AC S ++ + M
Sbjct: 182 NEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVG 241
Query: 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR-AYDFVITQYAACGN 309
D+ V + W+ T A+ Y+K+G +KA VL +E ++ N+ +R Y F+IT YA+ GN
Sbjct: 242 DKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKML--NRSNRLGYFFLITLYASLGN 299
Query: 310 KDDVLRVWKRYKQNL-KVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNH 368
K+ V+R+W+ K ++ YICV+SSL+K +E AE++F EWE++ +D+R+ N
Sbjct: 300 KEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNV 359
Query: 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLL 428
L+ AY R G + KAE+L RG PN +TW ++ G+++ EK ++AM + VL+
Sbjct: 360 LLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLM 419
Query: 429 EAGTRWKPSKECLAACLGYYKKERDIEGADYFIK 462
W+PS + A Y++KE IE A +++
Sbjct: 420 RR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVR 452
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 247/448 (55%), Gaps = 5/448 (1%)
Query: 35 TSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFR 94
+ +R+VT K LY L G + L+Q+++ + + ++ IKK R
Sbjct: 7 SRSRDVTKRSTKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLR 66
Query: 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV 154
+ AL++S M ++ T +D AI LDL+AK + I +YF +PE K
Sbjct: 67 NRGLYYPALKLSEVMEERG-MNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELT 125
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
Y +LLN Y EKAE ++ +M++ + ++ YNS+M +Y +TG +K+ +++ E++
Sbjct: 126 YGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELK 185
Query: 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274
+ + D YT+++ + A AA +D G+++++ M D V DWT Y+ AS YV AGLS
Sbjct: 186 AENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLS 245
Query: 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL-KVYNRGYIC 333
KA L++ E+ F+ AY F+IT Y G +V R+W+ + + K N Y+
Sbjct: 246 QKAEKALQELEMKNTQRDFT-AYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLN 304
Query: 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
+I L+K + + AE +F+EW++ +DIRI N LI AY + GL+ KA L KA RG
Sbjct: 305 MIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRG 364
Query: 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEA-GTRWKPSKECLAACLGYYKKER 452
+ N +TW + Y+++ + +E M KA+ + + G +W PS E + A + Y+++++
Sbjct: 365 GKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKK 424
Query: 453 DIEGADYFIKLL-TGKEIISADLQDRLL 479
D+ GA+ +++L G + I A++ + L+
Sbjct: 425 DVNGAENLLEILKNGTDNIGAEIFEPLI 452
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 203/368 (55%), Gaps = 19/368 (5%)
Query: 21 NVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRP 80
NV+ S S+ G+ +T +L + N ++P+L+QW ++G
Sbjct: 23 NVITVSMSWLKIHGSCPHRITDALHR-----------------NAQIIPVLEQWRQQGNQ 65
Query: 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAAS 140
++ +R+IIKK R + ALQ+S WM+K+ L P D A RL LI V G+E+A
Sbjct: 66 VNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEK 125
Query: 141 YFNCVPEKLKLPSVYIALLNAYACA-KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ 199
+F +P+ + SVY +LLN+YA + K+ KAE Q+MRD GL+ + + YN+MM++Y
Sbjct: 126 FFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSA 185
Query: 200 TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWT 259
N +K++ L+ EM++ ++ D T + +L +A D ++K + E G+ L+W
Sbjct: 186 LKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEGIHGIKLEWH 245
Query: 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319
A Y++A S KA+ +LR +E L+ AYD ++ Y GN+++VLRVWK
Sbjct: 246 TTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGNREEVLRVWKL 305
Query: 320 YKQNL-KVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL 378
YK + + N GY VI SLLK D + AE+I++ WES L D RIP L Y RG+
Sbjct: 306 YKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGM 365
Query: 379 LHKAETLI 386
KAE L+
Sbjct: 366 TEKAEKLM 373
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 36/214 (16%)
Query: 64 NDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVA 123
N + PLL+QW ++ +P D L+ +IK R K+FS ALQ+S WM +K L D A
Sbjct: 384 NKPVTPLLEQWGDQMKPSD---LKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYA 440
Query: 124 IRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGL 183
RL L V G+E+A YF +PE +K SVY+ALL++YA + D+ L
Sbjct: 441 ARLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKS--------------DKNL 486
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
GN +D ++ EMEE +D D T + +L AA S + ++
Sbjct: 487 -----------------GNM--VDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEM 527
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
+ + G+ L+ A YVKAGL+ K+
Sbjct: 528 FMRRWGTEDGIKLERGTMIAMAKAYVKAGLTKKS 561
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 235/453 (51%), Gaps = 13/453 (2%)
Query: 27 SSYSTATGTSTREVTISL-RKGSSMYKLYRMLSPMGD-PNDSMVPLLDQWVEEGRPLDME 84
++ +TAT + E S+ K +Y+ LS +G M L+Q+V EG P+
Sbjct: 14 ATLATATAEISGEAAASVPTKAKKHRSIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKH 73
Query: 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNC 144
L K R +++ AL+I WM +K T +D AIRL+LIAK +G+E A +YFN
Sbjct: 74 DLIRYAKDLRKFRQPQRALEIFEWMERKE-IAFTGSDHAIRLNLIAKSKGLEAAETYFNS 132
Query: 145 VPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
+ + +K S Y +LLN Y K KA+ + M D V ++ +N++M +Y G +
Sbjct: 133 LDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPE 192
Query: 205 KLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATA 264
K+ +L+ M+EK I T+S+ + +C + D +G++K++ M+A+ + W +A
Sbjct: 193 KVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANL 252
Query: 265 ASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVW----KRY 320
A+ Y+K GL KA L+ E M+ Y F+I Y N +V RVW KRY
Sbjct: 253 AAIYIKVGLYGKAEEALKSLEN-NMNPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRY 311
Query: 321 KQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLH 380
V N Y+ ++ +L K D ++ +K+F EWES +D+R+ N I +Y ++ +
Sbjct: 312 PN---VNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYE 368
Query: 381 KAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKEC 440
+AE + A + + L+ L+N+Q++ ++ + A +L+ W S E
Sbjct: 369 EAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA--VLDQDKNWTWSSEL 426
Query: 441 LAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473
+++ ++++ +D++GA+ F K LT +S++
Sbjct: 427 ISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSE 459
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 234/450 (52%), Gaps = 6/450 (1%)
Query: 20 GNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGR 79
NV+++S S S A R + S +LY+ LS + ++ L+Q++ EG
Sbjct: 41 ANVVEASVS-SPAAENGVRTSVAAPTVASRQRELYKKLSMLSVTGGTVAETLNQFIMEGI 99
Query: 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAA 139
+ + L K R ++R HA +I WM K+ + +D AI LDLI K +G+E A
Sbjct: 100 TVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR-KMTFSVSDHAICLDLIGKTKGLEAAE 158
Query: 140 SYFNCV-PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYY 198
+YFN + P S Y AL+N Y EKA+ + M + V ++ +N+MM++Y
Sbjct: 159 NYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYM 218
Query: 199 QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW 258
+ +K+ L+ M+++GI T+SI + +C + +D +G++KI+ M D W
Sbjct: 219 RLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTW 278
Query: 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318
++ A+ Y KAGL +KA + L+ E M N ++ F+++ YA +V RVW+
Sbjct: 279 NTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNN-RDSHHFLMSLYAGISKGPEVYRVWE 337
Query: 319 RYKQ-NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG 377
K+ +V N Y+ ++ ++ K ++ +KIF EWES+ +D+R+ N I+ Y +
Sbjct: 338 SLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGN 397
Query: 378 LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV-LLEAGTRWKP 436
+ +AE ++ A + P + L+ L+N++++ ++ ++ A+ E W
Sbjct: 398 MYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGW 457
Query: 437 SKECLAACLGYYKKERDIEGADYFIKLLTG 466
S E ++ +++K +D++GA+ F K+L+
Sbjct: 458 SSELVSLFFLHFEKAKDVDGAEDFCKILSN 487
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 222/415 (53%), Gaps = 7/415 (1%)
Query: 66 SMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125
S V + +W EEG + +L I+++ R KR+ HAL+I WM + + L D A+
Sbjct: 76 SAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVH 135
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185
LDLI+K++G+ A +F +P++++ + +LL++Y K ++KAE + ++M + G +K
Sbjct: 136 LDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLK 195
Query: 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIV 245
+ YN M+++Y G ++K+ L+ E++ + D T+++ L+A A+ +D EG +K+
Sbjct: 196 SCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFASGNDVEGAEKVY 254
Query: 246 AMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305
+ ++ + DW Y+ + Y K +KA L++ E L + K AY +I+ +A
Sbjct: 255 LKAKEEK-LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKL-VSKKNRVAYASLISLHA 312
Query: 306 ACGNKDDVLRVWKRYKQNLKVYNRG-YICVISSLLKFDGMESAEKIFEEWESRNLCHDIR 364
G+KD V WK+ K + K N Y+ +IS+++K E A+ +++EWES + D R
Sbjct: 313 NLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDAR 372
Query: 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKA 424
IPN ++ Y R + E + +G P+ TW ++ YL+ EK ++ KA
Sbjct: 373 IPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKA 432
Query: 425 LVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479
+++ +W + + +++ +++GA+ + LL ++ L + LL
Sbjct: 433 ---IDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLL 484
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 165/319 (51%), Gaps = 3/319 (0%)
Query: 63 PNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV 122
P S +L++W+ EG + + +LR I K+ R +R+ HAL+++ WM + ++ AD
Sbjct: 67 PKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADY 126
Query: 123 AIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQ-MRDR 181
A R+DLI+KV GI+ A YF + K Y +LL+AYA +K E+AE + ++ +
Sbjct: 127 ASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 186
Query: 182 GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI 241
L I YN MM +Y G +K+ ++ +++K + D +T+++ LS+CAA + + +
Sbjct: 187 SLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDEL 246
Query: 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301
KI+ M D W Y S Y+ + A + L + + YDF++
Sbjct: 247 RKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLM 306
Query: 302 TQYAACGNKDDVLRVWKRYKQ-NLKVYNRGYICVISSLLKFDGMESAEKIFEEW-ESRNL 359
+ GNK + ++WK + N + +R YICV+SS L + AE+I +W ES+
Sbjct: 307 ILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTT 366
Query: 360 CHDIRIPNHLIDAYCRRGL 378
D +++A+ GL
Sbjct: 367 EFDASACLRILNAFRDVGL 385
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 5/362 (1%)
Query: 63 PNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV 122
P S+ LD+WVEEG + ++ + + R + + ALQ+S W+ +T D
Sbjct: 140 PGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDY 199
Query: 123 AIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRG 182
A RLDL K++G+E+ + +P+ K +Y LL A + +K+E++ +M+D G
Sbjct: 200 ASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLG 259
Query: 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGID 242
+ M+ + ++ + KK+ ++ ME++ I T+ IL+ A +D G++
Sbjct: 260 FPLSGFTCDQML-LLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGME 318
Query: 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVIT 302
+I+ M+ D GV LD+ A A Y AGL DKA VL++ E + RA+ +++
Sbjct: 319 QILETMK-DEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEAN-RRAFKDLLS 376
Query: 303 QYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHD 362
YA+ G +D+V R+WK + K Y + I + K + ++ AE IFE+ +
Sbjct: 377 IYASLGREDEVKRIWKICES--KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRAS 434
Query: 363 IRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMK 422
+ L+ Y +L K + L+ + G TW + Y++ + EK +
Sbjct: 435 SSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLD 494
Query: 423 KA 424
KA
Sbjct: 495 KA 496
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 190/383 (49%), Gaps = 14/383 (3%)
Query: 45 RKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQ 104
++ S M+K +S + S+ LD+WVE+G+ + ++ + + R + F ALQ
Sbjct: 125 KRPSEMFKAIVSVSGL-----SVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQ 179
Query: 105 ISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC 164
++ W+ + F + D A RLDLI+KV+G + +Y +PE + VY LL +
Sbjct: 180 MTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVA 239
Query: 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT 224
+ AE + +M+D G T N M+ + Y+ + KK+ ++ +E++ + + T
Sbjct: 240 TSNVRTAEAVFNKMKDLGFPLSTFTCNQML-ILYKRVDKKKIADVLLLLEKENLKPNLNT 298
Query: 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284
+ IL+ +++D G+++IV M+++ GV LD A A Y AGL +KA VL++
Sbjct: 299 YKILIDTKGSSNDITGMEQIVETMKSE-GVELDLRARALIARHYASAGLKEKAEKVLKEM 357
Query: 285 EVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGM 344
E + D +++ Y +D+V RVWK ++N + YN + I + K D +
Sbjct: 358 EGESLEENRHMCKD-LLSVYGYLQREDEVRRVWKICEENPR-YNE-VLAAILAFGKIDKV 414
Query: 345 ESAEKIFEEWESRNLCHDI--RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWY 402
+ AE +FE + + H + + + L+ Y ++ + + L+ + G TW
Sbjct: 415 KDAEAVFE--KVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWD 472
Query: 403 LMATGYLQNNQSEKGVEAMKKAL 425
+ Y++ + EK ++ KA+
Sbjct: 473 AVIKLYVEAGEVEKAESSLSKAI 495
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 185/403 (45%), Gaps = 18/403 (4%)
Query: 66 SMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125
S+ +L++WV+EG+ L ++ + I R K ++ LQ+ W+ + F T A+ A +
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185
LDL+AKV +++A + +PE + VY LL KAE I +M++
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPT 275
Query: 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIV 245
N ++ + Y + KK+ ++ ME + I + T+ L+++ A D G++KIV
Sbjct: 276 SVFACNQLL-LLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIV 334
Query: 246 AMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE--VLMMHNKFSRAYDFVITQ 303
++ + G+ LD + + A Y++AGL ++A ++++ E L R+ ++
Sbjct: 335 ETIK-EEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRS---LLPL 390
Query: 304 YAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI 363
YA G+ D+V R+ + QN + N I I + K +E AE +FE + +
Sbjct: 391 YADIGDSDNVRRLSRFVDQNPRYDN--CISAIKAWGKLKEVEEAEAVFERLVEKYKIFPM 448
Query: 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
L++ Y +L K L+ + G TW+ + Y+ K E K
Sbjct: 449 MPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYI------KAGEVGKA 502
Query: 424 ALVLLEA--GTRWKPSKECLAACLGYYKKERDIEGAD-YFIKL 463
L+L A + +P A L Y K D+ + F+K+
Sbjct: 503 ELILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKM 545
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 187/406 (46%), Gaps = 33/406 (8%)
Query: 54 YRMLSPMG--------DPN------DSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRF 99
Y LSP G +PN DS++ L + ++ +L +K +K+F
Sbjct: 92 YHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKF 151
Query: 100 SHALQISMWMTKKSNF--VLTPADVAIRLDLIAKVQGIEQAASYFNCVPE---KLKLPSV 154
AL+ W K+ ++ +L + VAI + ++ K + AA+ FN + E L + S
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYS- 210
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN-YKKLDSLMHEM 213
Y +L++A+A + +A + ++M + G I YN ++NV+ + G + K+ SL+ +M
Sbjct: 211 YTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM 270
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
+ GI D YT++ L++ C S + ++ M+A G D Y Y K+
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHR 329
Query: 274 SDKALAVLRKSEVLMMHNKFSRA---YDFVITQYAACGNKDDVLRVWKRY-KQNLKVYNR 329
+A+ VL + M+ N FS + Y+ +I+ YA G D+ + + + ++ K
Sbjct: 330 PKEAMKVLNE----MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVF 385
Query: 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389
Y ++S + +ESA IFEE + +I N I Y RG + + +
Sbjct: 386 TYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445
Query: 390 QLRGTEPNVRTWYLMATGYLQNNQSEK--GV-EAMKKALVLLEAGT 432
+ G P++ TW + + QN + GV + MK+A + E T
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET 491
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 124/308 (40%), Gaps = 46/308 (14%)
Query: 135 IEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+++A N + EK P V Y LL+ + A E A I ++MR+ G +N+
Sbjct: 365 LDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNA 424
Query: 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVA--MMEA 250
+ +Y G + ++ + E+ G+ D T++ LL+ G+D V+ E
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQ----NGMDSEVSGVFKEM 480
Query: 251 DR-GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN 309
R G V + + T S Y + G ++A+ V R+ + S Y+ V+ A G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS-TYNTVLAALARGGM 539
Query: 310 KDDVLRVWK-----RYKQN-------LKVYNRG-------------YICVISS---LLKF 341
+ +V R K N L Y G Y VI LLK
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 342 --------DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
D + AE+ F E + R DI N ++ Y RR ++ KA ++ + RG
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 394 TEPNVRTW 401
P++ T+
Sbjct: 660 FTPSMATY 667
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/316 (20%), Positives = 126/316 (39%), Gaps = 71/316 (22%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
Y ALL+ Y + ++A ++ +M G + YNS+++ Y + G + L ++M
Sbjct: 316 TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQM 375
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
EKG D +T++ LL SG+ +AG
Sbjct: 376 AEKGTKPDVFTYTTLL------------------------------------SGFERAGK 399
Query: 274 SDKALAVLRKSEVLMMHNKFSRA----YDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR 329
+ A+++ + M N + ++ I Y GN+ ++ + +K+++
Sbjct: 400 VESAMSIFEE-----MRNAGCKPNICTFNAFIKMY---GNRG-------KFTEMMKIFDE 444
Query: 330 GYICVIS----------SLLKFDGMES-AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL 378
+C +S ++ +GM+S +F+E + + N LI AY R G
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS 504
Query: 379 LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK 438
+A T+ + G P++ T+ + + E+ +K L +E G R KP++
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS----EKVLAEMEDG-RCKPNE 559
Query: 439 ECLAACLGYYKKERDI 454
+ L Y ++I
Sbjct: 560 LTYCSLLHAYANGKEI 575
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 134/340 (39%), Gaps = 74/340 (21%)
Query: 130 AKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTID 189
++V G+ + VPE+ + L++AY+ S E+A + ++M D G+
Sbjct: 471 SEVSGVFKEMKRAGFVPER----ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST 526
Query: 190 YNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249
YN+++ + G +++ + ++ EME+ ++ T+ LL A A +G+ I + ++ E
Sbjct: 527 YNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA---NGKEIGLMHSLAE 583
Query: 250 A-------------------------------------DRGVVLDWTVYATAASGYVKAG 272
+RG D T + S Y +
Sbjct: 584 EVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQ 643
Query: 273 LSDKALAVL-------------RKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR--VW 317
+ KA VL + ++ MH SR+ DF G +++LR +
Sbjct: 644 MVAKANGVLDYMKERGFTPSMATYNSLMYMH---SRSADF--------GKSEEILREILA 692
Query: 318 KRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG 377
K K ++ YN VI + + M A +IF E + + D+ N I +Y
Sbjct: 693 KGIKPDIISYN----TVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748
Query: 378 LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKG 417
+ +A ++ G PN T+ + GY + N+ ++
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 116 VLTPADVAIRLDLI--AKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKA 171
V+ P V ++ ++ +K + +A F+ + E+ P + ++++ Y + KA
Sbjct: 589 VIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKA 648
Query: 172 EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231
++ M++RG YNS+M ++ ++ ++ K + ++ E+ KGI D +++ ++ A
Sbjct: 649 NGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYA 708
Query: 232 CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN 291
+ +I + M + G+V D Y T Y + ++A+ V+R ++ H
Sbjct: 709 YCRNTRMRDASRIFSEMR-NSGIVPDVITYNTFIGSYAADSMFEEAIGVVR---YMIKHG 764
Query: 292 --KFSRAYDFVITQYAACGNKDD 312
Y+ ++ Y KD+
Sbjct: 765 CRPNQNTYNSIVDGYCKLNRKDE 787
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 125 RLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRG 182
R ++AK G+ + + E+ PS+ Y +L+ ++ + K+E I++++ +G
Sbjct: 641 RRQMVAKANGV------LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKG 694
Query: 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGID 242
+ I YN+++ Y + + + EM GI D T++ + + AA S E
Sbjct: 695 IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAI 754
Query: 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
+V M G + Y + GY K D+A
Sbjct: 755 GVVRYM-IKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 8/213 (3%)
Query: 66 SMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125
S++PLL+QW ++G ++ LR +IK K F+ AL+ S WM K S F P D A +
Sbjct: 51 SIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALEASKWMFKHSVFDNFPEDCAAQ 110
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYA-CAKSAEKAEIIMQQMRDRGLV 184
L L+ V G+E+A F +PEK++ Y LL++Y ++ +KAE ++MR+ G +
Sbjct: 111 LHLVNTVLGLEEAEKMFKNIPEKMR---DYSVLLSSYTKPVRTVDKAEATFKKMRELGFL 167
Query: 185 KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKI 244
K +NSM+ +Y Q ++ L++++++ ++ + + A + E
Sbjct: 168 LKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNNMEVGSLKVNNVSRVYANINAMEKFKTW 227
Query: 245 VAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
V + G+ L+ A Y +AG +KA
Sbjct: 228 V----SKEGIELERDTIVAMAKAYHRAGSIEKA 256
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 157/369 (42%), Gaps = 30/369 (8%)
Query: 70 LLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR--LD 127
L ++ EEG D ++++ F A++ M M + + P+ V + +
Sbjct: 367 LFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRM---KSVRIAPSSVLVHTMIQ 423
Query: 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAK---------SAEKAEIIMQQM 178
K + E A FN E +IA + + C K + A ++ M
Sbjct: 424 GCLKAESPEAALEIFNDSFES------WIA--HGFMCNKIFLLFCKQGKVDAATSFLKMM 475
Query: 179 RDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDG 238
+G+ + YN+MM + + N S+ EM EKG++ + +T+SIL+ D
Sbjct: 476 EQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDE 535
Query: 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS---R 295
+ ++ M A + +Y T +G K G + KA +L+ L+ ++S
Sbjct: 536 QNAWDVINQMNAS-NFEANEVIYNTIINGLCKVGQTSKAKEMLQN---LIKEKRYSMSCT 591
Query: 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN-RGYICVISSLLKFDGMESAEKIFEEW 354
+Y+ +I + G+ D + ++ +N K N + +I+ K + M+ A ++ E
Sbjct: 592 SYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEM 651
Query: 355 ESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQS 414
+S L D+ LID +C++ + A TL + G PNV + + +G+ +
Sbjct: 652 KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKM 711
Query: 415 EKGVEAMKK 423
+ ++ KK
Sbjct: 712 DAAIDLYKK 720
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 123/305 (40%), Gaps = 58/305 (19%)
Query: 118 TPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPS---VYIALLNAYACAKSAEKAEII 174
TP D+ + LDL+ +++G KL +P+ Y +++ A+ + E+A +
Sbjct: 287 TP-DLVMALDLLREMRG-------------KLGVPASQETYTSVIVAFVKEGNMEEAVRV 332
Query: 175 MQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234
M +M G+ I S++N Y + K L + MEE+G+ DK FS+++
Sbjct: 333 MDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCK 392
Query: 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS 294
+ E + M++ R + + T G +KA + AL +
Sbjct: 393 NMEMEKAIEFYMRMKSVR-IAPSSVLVHTMIQGCLKAESPEAALEIF------------- 438
Query: 295 RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLL--KFDGMESAEKIFE 352
+D W + G++C LL K +++A +
Sbjct: 439 ----------------NDSFESWIAH---------GFMCNKIFLLFCKQGKVDAATSFLK 473
Query: 353 EWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412
E + + ++ N+++ A+CR + A ++ + +G EPN T+ ++ G+ +N
Sbjct: 474 MMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNK 533
Query: 413 QSEKG 417
+
Sbjct: 534 DEQNA 538
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 9/172 (5%)
Query: 148 KLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207
KL LP+ Y AL++ + + A + ++ + GL+ YNS+++ + G
Sbjct: 657 KLDLPA-YGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAI 715
Query: 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267
L +M GI CD +T++ ++ + + + + D G+V D ++ +G
Sbjct: 716 DLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSEL-LDLGIVPDEILHMVLVNG 774
Query: 268 YVKAGL---SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRV 316
K G + K L ++K +V Y VI + GN ++ R+
Sbjct: 775 LSKKGQFLKASKMLEEMKKKDV----TPNVLLYSTVIAGHHREGNLNEAFRL 822
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 145 VPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
VP+++ +++ L+N + KA ++++M+ + + + Y++++ +++ GN
Sbjct: 762 VPDEI----LHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLN 817
Query: 205 KLDSLMHEMEEKGIDCDKYTFSILLSA 231
+ L EM EKGI D F++L+S
Sbjct: 818 EAFRLHDEMLEKGIVHDDTVFNLLVSG 844
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 135/306 (44%), Gaps = 43/306 (14%)
Query: 136 EQAASYFNCVPEKLKLPSV--YIALLNAYACAKSA---EKAEIIMQQMRDRGLVKKTIDY 190
E+A S FN + E P++ Y A+++A C K ++ +M+ G+ I +
Sbjct: 285 EEAISVFNSMKEYGLRPNLVTYNAVIDA--CGKGGMEFKQVAKFFDEMQRNGVQPDRITF 342
Query: 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250
NS++ V + G ++ +L EM + I+ D ++++ LL A + +I+A M
Sbjct: 343 NSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPV 402
Query: 251 DR----------------------------------GVVLDWTVYATAASGYVKAGLSDK 276
R G+ LD Y T S Y K G S++
Sbjct: 403 KRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462
Query: 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR-GYICVI 335
AL +LR+ + + K Y+ ++ Y G D+V +V+ K+ + N Y +I
Sbjct: 463 ALDILREMASVGI-KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLI 521
Query: 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395
K + A +IF E++S L D+ + + LIDA C+ GL+ A +LI + G
Sbjct: 522 DGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGIS 581
Query: 396 PNVRTW 401
PNV T+
Sbjct: 582 PNVVTY 587
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 6/273 (2%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG-NYKKLDSLMHE 212
+ AL++AY + E+A + M++ GL + YN++++ + G +K++ E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 213 MEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG 272
M+ G+ D+ TF+ LL+ C+ E + M +R + D Y T K G
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGG 388
Query: 273 LSDKALAVLRKSEV-LMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR-G 330
D A +L + V +M N S Y VI +A G D+ L ++ + +R
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVS--YSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVS 446
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
Y ++S K E A I E S + D+ N L+ Y ++G + + + + +
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506
Query: 391 LRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
PN+ T+ + GY + ++ +E ++
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFRE 539
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 111/259 (42%), Gaps = 38/259 (14%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGL 183
LD I K ++ A +P K +P+V Y +++ +A A ++A + +MR G+
Sbjct: 381 LDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGI 440
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
+ YN+++++Y + G ++ ++ EM GI D T++ LL + + K
Sbjct: 441 ALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKK 500
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ 303
+ M+ + V+ + Y+T GY K GL +A+ + R +
Sbjct: 501 VFTEMKREH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFR--------------------E 539
Query: 304 YAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI 363
+ + G + DV+ Y +I +L K + SA + +E + ++
Sbjct: 540 FKSAGLRADVVL---------------YSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
Query: 364 RIPNHLIDAYCRRGLLHKA 382
N +IDA+ R + ++
Sbjct: 585 VTYNSIIDAFGRSATMDRS 603
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 259 TVYATAA--SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKD----D 312
TVYA +A S Y ++GL ++A++V + + Y+ VI ACG
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV-TYNAVID---ACGKGGMEFKQ 322
Query: 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGM-ESAEKIFEEWESRNLCHDIRIPNHLID 371
V + + ++N +R + ++ G+ E+A +F+E +R + D+ N L+D
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382
Query: 372 AYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408
A C+ G + A ++ + ++ PNV ++ + G+
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGF 419
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 9/368 (2%)
Query: 71 LDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIA 130
L W+ +G P+ + I + R R AL++ W+ ++ + L + + L+
Sbjct: 85 LQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSYLLEFTV 144
Query: 131 KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDY 190
K+ G+ Q F VP++ + +Y L+ A A M++MR+ G + Y
Sbjct: 145 KLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTSHLVY 204
Query: 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250
N ++ G K + + M+ T+ IL+ A + +G+ K M+
Sbjct: 205 NRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFDGMK- 263
Query: 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310
GV + Y A + A L A A + E + + +S D ++ Y G +
Sbjct: 264 KAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWS-TLDILMILYGRLGKE 322
Query: 311 DDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLI 370
++ R W + V ++ Y+ + + ++ AE+++ E ++ + N L+
Sbjct: 323 KELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQFNSLL 382
Query: 371 DAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEA 430
YC+ GL+ KA + + G +PN T+ +A G + + MK+AL +E
Sbjct: 383 SVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAK-------AKLMKEALKNIEM 435
Query: 431 GTRWKPSK 438
G K SK
Sbjct: 436 GLNLKTSK 443
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 10/274 (3%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
Y L+ Y C + KA ++ +M +R ++ + YNS+++ ++GN+ L+ M
Sbjct: 430 TYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM 488
Query: 214 EEKGIDCDKYTF-SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG 272
++G+ D++T+ S++ S C + E D ++ + +GV + +Y GY KAG
Sbjct: 489 NDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQ--KGVNPNVVMYTALIDGYCKAG 546
Query: 273 LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN---KDDVLRVWKRYKQNLKVYNR 329
D+A +L K ++ N + F + C + K+ L K K L+
Sbjct: 547 KVDEAHLMLEK---MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603
Query: 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389
+I LLK + A F++ S D I YCR G L AE ++ K
Sbjct: 604 TDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM 663
Query: 390 QLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+ G P++ T+ + GY Q+ + +K+
Sbjct: 664 RENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKR 697
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 156/397 (39%), Gaps = 40/397 (10%)
Query: 46 KGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQI 105
+ SM +R+LS + PN P L V P + L F L AL
Sbjct: 56 ESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSL------FSLDLDPKTALNF 109
Query: 106 SMWMTKKSNFVLTPADVA-----------------IRLDLIAKVQGIEQAASYFNCV--- 145
S W+++ + + A IRL +I + A +
Sbjct: 110 SHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKM 169
Query: 146 --PEKLKLP-----SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYY 198
E+ +L Y LLN+ A ++ + + +M + + YN M+N Y
Sbjct: 170 NKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC 229
Query: 199 QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW 258
+ GN ++ + + ++ E G+D D +T++ L+ D + K+ M +G +
Sbjct: 230 KLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL-KGCRRNE 288
Query: 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN--KDDVLRV 316
Y G A D+A+ + K + F + + + CG+ K + L +
Sbjct: 289 VAYTHLIHGLCVARRIDEAMDLFVK---MKDDECFPTVRTYTVLIKSLCGSERKSEALNL 345
Query: 317 WKRYKQN-LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR 375
K ++ +K Y +I SL E A ++ + + L ++ N LI+ YC+
Sbjct: 346 VKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCK 405
Query: 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412
RG++ A ++ + R PN RT+ + GY ++N
Sbjct: 406 RGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN 442
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/443 (23%), Positives = 182/443 (41%), Gaps = 55/443 (12%)
Query: 64 NDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVA 123
+D+M +L + E G ++ I++K R AL++ + M +P DV
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALEL-LHMMADDRGGGSPPDVV 197
Query: 124 IRLDLIA---KVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQM 178
+I K ++A S ++ + ++ LP V Y +++ A A++ +KA ++ M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 179 RDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDG 238
G++ + YNS+++ Y +G K+ + +M G++ D T+S+L+
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317
Query: 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR--- 295
KI M RG+ + T Y T GY G AL + LM+ N
Sbjct: 318 MEARKIFDSM-TKRGLKPEITTYGTLLQGYATKG----ALVEMHGLLDLMVRNGIHPDHY 372
Query: 296 AYDFVITQYAACGNKDDVLRVWKRYKQ-----NLKVYNR--GYIC----VISSLLKFDGM 344
+ +I YA G D + V+ + +Q N Y G +C V ++L F+ M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 345 -------------------------ESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLL 379
E AE++ E R +C + N +ID++C+ G +
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 380 HKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKE 439
++E L G +PNV T+ + GY + + EAMK ++ G KP+
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD---EAMKLLSGMVSVG--LKPNTV 547
Query: 440 CLAACLGYYKKERDIEGADYFIK 462
+ + Y K +E A K
Sbjct: 548 TYSTLINGYCKISRMEDALVLFK 570
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 152/351 (43%), Gaps = 24/351 (6%)
Query: 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV--AI 124
M LLD V G D I+I + + A+ + M ++ L P V
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG---LNPNAVTYGA 411
Query: 125 RLDLIAKVQGIEQAASYFNCVPEKLKLPS--VYIALLNAYACAKSAEKAEIIMQQMRDRG 182
+ ++ K +E A YF + ++ P VY +L++ E+AE ++ +M DRG
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Query: 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGI 241
+ TI +NS+++ + + G + + L M G+ + T++ L++ C A E +
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAM 531
Query: 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV------LMMHNKFSR 295
+ M+ G+ + Y+T +GY K + AL + ++ E ++ +N +
Sbjct: 532 KLLSGMVSV--GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 589
Query: 296 AYDFVITQYAACGNKDDVLRVWKRYKQ-NLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354
F + AA K+ +R+ + Q L YN ++ L K + A ++F+
Sbjct: 590 GL-FQTRRTAAA--KELYVRITESGTQIELSTYN----IILHGLCKNKLTDDALQMFQNL 642
Query: 355 ESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMA 405
+L + R N +IDA + G +A+ L G PN T+ LMA
Sbjct: 643 CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA 693
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 148/317 (46%), Gaps = 17/317 (5%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
V+ L+ ++ E+A +I +M +G+ TI YN++M+ Y ++ + ++++ L EM
Sbjct: 346 VFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEM 405
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA-G 272
+KG+ T++IL+ A A + ++ ++ ME D G+ + Y S Y +
Sbjct: 406 RDKGLKPSAATYNILMDAYARRMQPDIVETLLREME-DLGLEPNVKSYTCLISAYGRTKK 464
Query: 273 LSDKAL-AVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY-KQNLKVYNRG 330
+SD A A LR +V + + S +Y +I Y+ G + ++ K+ +K
Sbjct: 465 MSDMAADAFLRMKKVGLKPS--SHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVET 522
Query: 331 YICVISSLLKFDGMESAEKIFEEWE--SRNLCHDIRIP-NHLIDAYCRRGLLHKAETLIY 387
Y V+ + F K+ E W+ R RI N L+D + ++GL +A ++
Sbjct: 523 YTSVLDA---FRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVS 579
Query: 388 KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGY 447
+ G +P+V T+ ++ Y + Q K + +K+ A KP + +
Sbjct: 580 EFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEM-----AALNLKPDSITYSTMIYA 634
Query: 448 YKKERDIEGADYFIKLL 464
+ + RD + A ++ K++
Sbjct: 635 FVRVRDFKRAFFYHKMM 651
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 49/293 (16%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPS--VYIALLNAYACAKSAEKAEIIMQQMRDRGL 183
+D K IE+ F + +K PS Y L++AYA + E ++++M D GL
Sbjct: 386 MDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGL 445
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHE----MEEKGIDCDKYTFSILLSACAAASDGE 239
Y +++ Y G KK+ + + M++ G+ ++++ L+ A
Sbjct: 446 EPNVKSYTCLISAY---GRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHA-------- 494
Query: 240 GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS-RAYD 298
Y +G +KA A E+ K S Y
Sbjct: 495 ----------------------------YSVSGWHEKAYASFE--EMCKEGIKPSVETYT 524
Query: 299 FVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357
V+ + G+ ++ +WK ++ +K Y ++ K A + E+
Sbjct: 525 SVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM 584
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410
L + N L++AY R G K L+ + +P+ T+ M +++
Sbjct: 585 GLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 36/253 (14%)
Query: 156 IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215
+++++A A + +AE + +++R G+ +T YN+++ Y +TG K +S++ EME+
Sbjct: 308 VSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK 367
Query: 216 KGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275
+G+ D++T+S+L+ A A E ++ MEA V + V++ +G+ G
Sbjct: 368 RGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAG-DVQPNSFVFSRLLAGFRDRGEWQ 426
Query: 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVI 335
K VL+ + + G K D + Y VI
Sbjct: 427 KTFQVLK--------------------EMKSIGVKPD---------------RQFYNVVI 451
Query: 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395
+ KF+ ++ A F+ S + D N LID +C+ G AE + + RG
Sbjct: 452 DTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCL 511
Query: 396 PNVRTWYLMATGY 408
P T+ +M Y
Sbjct: 512 PCATTYNIMINSY 524
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 36/273 (13%)
Query: 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMH 211
P Y AL+ A A EKA ++ +MR G ++Y+ ++ ++ K+DS+M
Sbjct: 197 PLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSN---KIDSVML 253
Query: 212 EMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA 271
K I+ DK +E D +V D + G+ K+
Sbjct: 254 LRLYKEIERDK-------------------------LELDVQLVNDIIM------GFAKS 282
Query: 272 GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQN-LKVYNRG 330
G KAL +L ++ + K + +I+ A G + +++ +Q+ +K R
Sbjct: 283 GDPSKALQLLGMAQATGLSAKTATLVS-IISALADSGRTLEAEALFEELRQSGIKPRTRA 341
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
Y ++ +K ++ AE + E E R + D + LIDAY G A ++ + +
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 401
Query: 391 LRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+PN + + G+ + +K + +K+
Sbjct: 402 AGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKE 434
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/304 (18%), Positives = 124/304 (40%), Gaps = 18/304 (5%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
Y ALL Y + AE ++ +M RG+ Y+ +++ Y G ++ ++ EME
Sbjct: 342 YNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEME 401
Query: 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274
+ + + FS LL+ + + +++ M++ GV D Y + K
Sbjct: 402 AGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKS-IGVKPDRQFYNVVIDTFGKFNCL 460
Query: 275 DKALAVLRKSEVLMMHNKFSR---AYDFVITQYAACGNK---DDVLRVWKRYKQNLKVYN 328
D A+ + M+ ++ +I + G +++ +R +
Sbjct: 461 DHAMTTFDR----MLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER--RGCLPCA 514
Query: 329 RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388
Y +I+S + + +++ + +S+ + ++ L+D Y + G + A + +
Sbjct: 515 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE 574
Query: 389 AQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYY 448
+ G +P+ + + Y Q SE+ V A + V+ G KPS L + + +
Sbjct: 575 MKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFR---VMTSDG--LKPSLLALNSLINAF 629
Query: 449 KKER 452
++R
Sbjct: 630 GEDR 633
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212
++Y AL+NAYA +E+A + M GL + NS++N + + + +++
Sbjct: 585 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 644
Query: 213 MEEKGIDCDKYTFSILLSA 231
M+E G+ D T++ L+ A
Sbjct: 645 MKENGVKPDVVTYTTLMKA 663
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/108 (17%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 144 CVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY 203
C+P + Y ++N+Y + + + ++ +M+ +G++ + + ++++VY ++G +
Sbjct: 510 CLP----CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRF 565
Query: 204 KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEAD 251
+ EM+ G+ ++ L++A A E +M +D
Sbjct: 566 NDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSD 613
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 124/279 (44%), Gaps = 19/279 (6%)
Query: 142 FNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG 201
F C P Y LLNA+ AK K E + G+ YN ++ + +
Sbjct: 108 FGCEPA----IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKK 163
Query: 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME--ADRGVVLDWT 259
++K + M ++G D +++S +++ A A +D + + + ++RGV D T
Sbjct: 164 EFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGK---LDDALELFDEMSERGVAPDVT 220
Query: 260 VYATAASGYVKAGLSDKALA----VLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR 315
Y G++K A+ +L S V + ++ +I+ + CG DD L+
Sbjct: 221 CYNILIDGFLKEKDHKTAMELWDRLLEDSSVY----PNVKTHNIMISGLSKCGRVDDCLK 276
Query: 316 VWKRYKQNLKVYN-RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC 374
+W+R KQN + + Y +I L ++ AE +F E + R D+ N ++ +C
Sbjct: 277 IWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFC 336
Query: 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413
R G + ++ L ++ N+ ++ ++ G L+N +
Sbjct: 337 RCGKIKESLEL-WRIMEHKNSVNIVSYNILIKGLLENGK 374
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/343 (19%), Positives = 140/343 (40%), Gaps = 14/343 (4%)
Query: 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQ 137
G +++ ++IK K F A WM K+ F + ++ +AK ++
Sbjct: 144 GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDD 202
Query: 138 AASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKA-EIIMQQMRDRGLVKKTIDYNSMM 194
A F+ + E+ P V Y L++ + K + A E+ + + D + +N M+
Sbjct: 203 ALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMI 262
Query: 195 NVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGV 254
+ + G + M++ + D YT+S L+ A + + + + ++ +R
Sbjct: 263 SGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELD-ERKA 321
Query: 255 VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR---AYDFVITQYAACGNKD 311
+D Y T G+ + G ++L + R +M +K S +Y+ +I G D
Sbjct: 322 SIDVVTYNTMLGGFCRCGKIKESLELWR-----IMEHKNSVNIVSYNILIKGLLENGKID 376
Query: 312 DVLRVWKRYKQNLKVYNRGYICVISSLLKFDG-MESAEKIFEEWESRNLCHDIRIPNHLI 370
+ +W+ ++ + L +G + A + +E ES D+ +I
Sbjct: 377 EATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASII 436
Query: 371 DAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413
D C++ L +A L+ + G E N + G +++++
Sbjct: 437 DCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSR 479
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 13/213 (6%)
Query: 170 KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229
+A +++M G + YN ++ + G + + + + EM E G D T+SILL
Sbjct: 482 EASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILL 541
Query: 230 SACAAASDGEGIDKIVAMMEA--DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287
C D + ID + + G+ D ++ G G D A+ V+ E
Sbjct: 542 --CGLCRDRK-IDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANME-- 596
Query: 288 MMHNKFSR---AYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDG 343
H + Y+ ++ + G+ + +W YK L+ Y ++ L G
Sbjct: 597 --HRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRG 654
Query: 344 MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR 376
+ A + F++ + + + N L+ A R
Sbjct: 655 VSYAMEFFDDARNHGIFPTVYTWNILVRAVVNR 687
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 164/371 (44%), Gaps = 19/371 (5%)
Query: 41 TISLRKGSSMYKLYRMLSPMGD--PNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKR 98
++S+ KG Y + +++ + P S+ LD + + L + ++ K+F
Sbjct: 64 SVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNK---LSLNDFALVFKEFAGRGD 120
Query: 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YI 156
+ +L++ +M ++ I + L+ + +++ F+ +P + SV Y
Sbjct: 121 WQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYT 180
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG-NYKKLDSLMHEMEE 215
AL+NAY E + ++ +M++ + + YN+++N + G +++ L L EM
Sbjct: 181 ALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH 240
Query: 216 KGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275
+GI D T++ LLSACA G+ + + M D G+V D T Y+ + K +
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLE 299
Query: 276 KALAVLRKSEVLMMHNKFS----RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGY 331
K +L + M + S +Y+ ++ YA G+ + + V+ + + N
Sbjct: 300 KVCDLLGE-----MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANT 354
Query: 332 ICVISSLLKFDG-MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
V+ +L G + ++F E +S N D N LI+ + G + TL +
Sbjct: 355 YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414
Query: 391 LRGTEPNVRTW 401
EP++ T+
Sbjct: 415 EENIEPDMETY 425
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 127/336 (37%), Gaps = 51/336 (15%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGL 183
++ K++ +E+ + LP + Y LL AYA + S ++A + QM+ G
Sbjct: 289 VETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGC 348
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG--I 241
Y+ ++N++ Q+G Y + L EM+ D D T++IL+ GEG
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVF-----GEGGYF 403
Query: 242 DKIVAMME--ADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDF 299
++V + + + D Y K GL + A +L ++ A D
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKIL----------QYMTANDI 453
Query: 300 VITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL 359
V + ++ Y VI + + E A F
Sbjct: 454 VPS-------------------------SKAYTGVIEAFGQAALYEEALVAFNTMHEVGS 488
Query: 360 CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419
I + L+ ++ R GL+ ++E ++ + G N T+ Y Q + E+ V
Sbjct: 489 NPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV- 547
Query: 420 AMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIE 455
K V +E +R P + L A L Y R ++
Sbjct: 548 ---KTYVDMEK-SRCDPDERTLEAVLSVYSFARLVD 579
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 111/252 (44%), Gaps = 7/252 (2%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
Y LL+A A ++AE++ + M D G+V Y+ ++ + + +K+ L+ EM
Sbjct: 249 TYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEM 308
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
G D ++++LL A A + + + M+A G + Y+ + + ++G
Sbjct: 309 ASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA-AGCTPNANTYSVLLNLFGQSGR 367
Query: 274 SD--KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR-YKQNLKVYNRG 330
D + L + KS + + Y+ +I + G +V+ ++ ++N++
Sbjct: 368 YDDVRQLFLEMKSS---NTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMET 424
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
Y +I + K E A KI + + ++ + +I+A+ + L +A
Sbjct: 425 YEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH 484
Query: 391 LRGTEPNVRTWY 402
G+ P++ T++
Sbjct: 485 EVGSNPSIETFH 496
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 118/271 (43%), Gaps = 3/271 (1%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
Y L+N ++ + ++M++ G+ YN +MN + G K + EM
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
E+G+ C+ T++ L+ +K+V M++D G+ + Y T G+ G
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGK 353
Query: 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ-NLKVYNRGYI 332
KAL++ R + + Y+ +++ + G+ ++ K ++ +K Y
Sbjct: 354 LGKALSLCRDLKSRGLSPSLV-TYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412
Query: 333 CVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLR 392
+I + + D ME A ++ E L D+ + LI +C +G +++A L +
Sbjct: 413 ILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472
Query: 393 GTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
EPN + M GY + S + ++ +K+
Sbjct: 473 NCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 128/281 (45%), Gaps = 23/281 (8%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
+Y ++N+Y ++S + +M D G V + +N ++ + ++ + S +E
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155
Query: 214 EEKGIDCDKYTFSILLSACAAASDGE-GIDKIVAMMEADRGVVLDWTVYATAASGYVKAG 272
+ K + D Y+F IL+ C A + E D ++ + E G + +Y T G K G
Sbjct: 156 KSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEF--GFSPNVVIYTTLIDGCCKKG 212
Query: 273 LSDKALAVLRK-SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ-----NLKV 326
+KA + + ++ ++ N+ R Y +I G K ++++ ++ NL
Sbjct: 213 EIEKAKDLFFEMGKLGLVANE--RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYT 270
Query: 327 YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLI 386
YN CV++ L K + A ++F+E R + +I N LI CR L++A ++
Sbjct: 271 YN----CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVV 326
Query: 387 YKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427
+ + G PN+ T+ + G+ GV + KAL L
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFC-------GVGKLGKALSL 360
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 3/237 (1%)
Query: 170 KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229
+A ++ QM+ G+ I YN++++ + G K SL +++ +G+ T++IL+
Sbjct: 321 EANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Query: 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM 289
S D G K+V ME +RG+ Y + ++ +KA+ + E L +
Sbjct: 381 SGFCRKGDTSGAAKMVKEME-ERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGL 439
Query: 290 HNKFSRAYDFVITQYAACGNKDDVLRVWKR-YKQNLKVYNRGYICVISSLLKFDGMESAE 348
Y +I + G ++ R++K ++N + Y +I K A
Sbjct: 440 VPDV-HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 349 KIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMA 405
K+ +E E + L ++ ++I+ C+ +AE L+ K G +P+ L++
Sbjct: 499 KLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLIS 555
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 9/273 (3%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
+ L+N +A ++ +M + G I N+++N +G + L+ +M
Sbjct: 161 FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV 220
Query: 215 EKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
E G + T+ +L+ C + ++ + M E R + LD Y+ G K G
Sbjct: 221 EYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEE--RNIKLDAVKYSIIIDGLCKHGS 278
Query: 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD---VLRVWKRYKQNLKVYNRG 330
D A + + E+ + Y+ +I + G DD +LR + K N V
Sbjct: 279 LDNAFNLFNEMEMKGITTNII-TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT-- 335
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
+ +I S +K + AE++ +E R + D LID +C+ L KA ++
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395
Query: 391 LRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+G +PN+RT+ ++ GY + N+ + G+E +K
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 29/294 (9%)
Query: 142 FNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG 201
+ C P + Y +LN + A ++++M +R + + Y+ +++ + G
Sbjct: 222 YGCQPNAV----TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHG 277
Query: 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTV 260
+ +L +EME KGI + T++IL+ C A +G + M++ R + +
Sbjct: 278 SLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK--RKINPNVVT 335
Query: 261 YATAASGYVKAGLSDKALAVLRKSEVL---MMHNKFSR---AYDFVITQYAACGNKDDV- 313
++ +VK G LR++E L M+H + Y +I + + D
Sbjct: 336 FSVLIDSFVKEG-------KLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN 388
Query: 314 ----LRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHL 369
L V K N++ +N +I+ K + ++ ++F + R + D N L
Sbjct: 389 QMVDLMVSKGCDPNIRTFN----ILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 370 IDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
I +C G L+ A+ L + R PN+ T+ ++ G N +SEK +E +K
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK 498
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 109/259 (42%), Gaps = 40/259 (15%)
Query: 152 PSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209
P+V + L++++ +AE + ++M RG+ TI Y S+++ + + + K + +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 210 MHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268
+ M KG D + TF+IL++ C A +G++ M + RGVV D Y T G+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM--SLRGVVADTVTYNTLIQGF 448
Query: 269 VKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN 328
+ G + A + ++ V ++ N+ Y
Sbjct: 449 CELGKLNVAKELFQE-------------------------------MVSRKVPPNIVTYK 477
Query: 329 RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388
++ L E A +IFE+ E + DI I N +I C + A L
Sbjct: 478 ----ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 533
Query: 389 AQLRGTEPNVRTWYLMATG 407
L+G +P V+T+ +M G
Sbjct: 534 LPLKGVKPGVKTYNIMIGG 552
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 140/340 (41%), Gaps = 17/340 (5%)
Query: 151 LPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208
LP+V + L +A A K + + +QM +G+ + M+N + + S
Sbjct: 85 LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFS 144
Query: 209 LMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267
M ++ + G + + TFS L++ C E ++ + M+E G D T +G
Sbjct: 145 AMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM--GHKPDLITINTLVNG 202
Query: 268 YVKAGLSDKALAVLRK-SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ-NLK 325
+G +A+ ++ K E N + Y V+ G + + ++ ++ N+K
Sbjct: 203 LCLSGKEAEAMLLIDKMVEYGCQPNAVT--YGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 326 VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385
+ Y +I L K +++A +F E E + + +I N LI +C G L
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320
Query: 386 IYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445
+ R PNV T+ ++ +++ + + E K+ ++ G P + +
Sbjct: 321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE---MIHRGI--APDTITYTSLI 375
Query: 446 GYYKKERDIEGADYFIKLLTGKEIISADLQDRLLNNIRNG 485
+ KE ++ A+ + L+ K D R N + NG
Sbjct: 376 DGFCKENHLDKANQMVDLMVSK---GCDPNIRTFNILING 412
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 37/275 (13%)
Query: 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSI 227
E+A ++Q+M+DRG+V I+Y ++++ Y G L+ EM G+ D T+++
Sbjct: 404 VEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNV 463
Query: 228 LLSACAAASDGEGIDKIVAMMEAD--------RGVVLDWTVY------------------ 261
L+S A E + +I M+A+ V+++ +
Sbjct: 464 LVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQKC 523
Query: 262 ----ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVW 317
A+ GY +AGLS KA + E + + + + + F + DVL+
Sbjct: 524 PENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKSVYIKLF-FSLCIEGYLEKAHDVLKKM 582
Query: 318 KRYKQNLKVYNRGYIC--VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR 375
Y +V +C +I + K + + A+ +F+ R L D+ +I YCR
Sbjct: 583 SAY----RVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCR 638
Query: 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410
L KAE+L + RG +P+V T+ ++ YL+
Sbjct: 639 LNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLK 673
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 58/229 (25%)
Query: 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG 217
++ A+ + +A+++ M +RGL+ Y M++ Y + +K +SL +M+++G
Sbjct: 597 MIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRG 656
Query: 218 IDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
I D T+++LL DR + LD + T + V+ + +
Sbjct: 657 IKPDVVTYTVLL---------------------DRYLKLDPEHHETCS---VQGEVGKR- 691
Query: 278 LAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337
+ SEVL +++A G DV+ Y +I
Sbjct: 692 ----KASEVL--------------REFSAAGIGLDVV---------------CYTVLIDR 718
Query: 338 LLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLI 386
K + +E A ++F+ L D+ LI +Y R+G + A TL+
Sbjct: 719 QCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLV 767
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 129 IAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKK 186
K+ + +A F+ + E+ +P + Y +++ Y +KAE + + M+ RG+
Sbjct: 601 FCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPD 660
Query: 187 TIDYNSMMNVY-------YQTGNY------KKLDSLMHEMEEKGIDCDKYTFSILLSACA 233
+ Y +++ Y ++T + +K ++ E GI D +++L+
Sbjct: 661 VVTYTVLLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQC 720
Query: 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL 281
++ E ++ M D G+ D Y T S Y + G D A+ ++
Sbjct: 721 KMNNLEQAAELFDRM-IDSGLEPDMVAYTTLISSYFRKGYIDMAVTLV 767
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 80/336 (23%)
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
AL+ AY ++A ++ Q + V N +MN + G L +L ++++
Sbjct: 151 ALVKAYVSLGMFDEATDVLFQSKRLDCVVDIKACNFLMNRMTEFGKIGMLMTLFKQLKQL 210
Query: 217 GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK 276
G+ ++YT++I++ A + E ++ E+ G Y T +G G ++K
Sbjct: 211 GLCANEYTYAIVVKALCRKGNLEEAAMLLIENESVFG-------YKTFINGLCVTGETEK 263
Query: 277 ALAVLR-------------KSEVLMMHNKFS-----RAYDFVITQYAACGNKDDV---LR 315
A+A++ ++ + M+ F +A + VI + G DV L
Sbjct: 264 AVALILELIDRKYLAGDDLRAVLGMVVRGFCNEMKMKAAESVIIEMEEIGFGLDVYACLA 323
Query: 316 VWKRYKQNLKVYNR-GYI-----------CVISSLL------------------------ 339
V RY +N+ + G++ CVI SL+
Sbjct: 324 VIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMN 383
Query: 340 ----------KFDGM------ESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383
FD + E A ++ +E + R + D+ LID YC +G + A
Sbjct: 384 IFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDAL 443
Query: 384 TLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419
LI + G P++ T+ ++ +G +N E+ +E
Sbjct: 444 DLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLE 479
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 11/291 (3%)
Query: 124 IRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDR 181
I ++ + K +E+ ++ + V EK P + Y L++AY+ E+A +M M +
Sbjct: 240 IMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK 299
Query: 182 GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTF-SILLSACAAASDGEG 240
G YN+++N + G Y++ + EM G+ D T+ S+L+ AC E
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVE- 358
Query: 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLR--KSEVLMMHNKFSRAYD 298
+K+ + M + R VV D +++ S + ++G DKAL K L+ N Y
Sbjct: 359 TEKVFSDMRS-RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI---YT 414
Query: 299 FVITQYAACGNKDDVLRVWKR-YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357
+I Y G + + +Q + Y ++ L K + A+K+F E R
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408
L D LID +C+ G L A L K + + +V T+ + G+
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 135/334 (40%), Gaps = 49/334 (14%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPS--VYIALLNAYACAKSAEKAEIIMQQMRDRGL 183
+ L + +++A YFN V E +P +Y L+ Y A + +M +G
Sbjct: 382 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGC 441
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
+ YN++++ + + D L +EM E+ + D YT +IL+ + + +
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAV---LRKSEVLMMHNKFSRAYDFV 300
+ M+ R + LD Y T G+ K G D A + + E+L +Y +
Sbjct: 502 LFQKMKEKR-IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL----PTPISYSIL 556
Query: 301 ITQYAACGNKDDVLRVW-----KRYKQNLKVYN---RGYI-------------------- 332
+ + G+ + RVW K K + + N +GY
Sbjct: 557 VNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616
Query: 333 ---CV-----ISSLLKFDGMESAEKIFE--EWESRNLCHDIRIPNHLIDAYCRRGLLHKA 382
C+ I ++ + M A + + E E L D+ N ++ +CR+ + +A
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676
Query: 383 ETLIYKAQLRGTEPNVRTWYLMATGYL-QNNQSE 415
E ++ K RG P+ T+ M G++ Q+N +E
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 120/271 (44%), Gaps = 16/271 (5%)
Query: 163 ACAKS-AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221
AC K + E + MR R +V + ++SMM+++ ++GN K + ++E G+ D
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409
Query: 222 KYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK---AGLSDKA 277
++IL+ C ++ M++ +G +D Y T G K G +DK
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQ--QGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 278 LAVLRKSEVLMMHNKFSRAYDFVITQYAAC--GNKDDVLRVWKRYKQN-LKVYNRGYICV 334
+ + + F +Y I C GN + + ++++ K+ +++ Y +
Sbjct: 468 FNEMTERAL------FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521
Query: 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT 394
+ K +++A++I+ + S+ + + L++A C +G L +A + + +
Sbjct: 522 LDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI 581
Query: 395 EPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425
+P V M GY ++ + G ++K +
Sbjct: 582 KPTVMICNSMIKGYCRSGNASDGESFLEKMI 612
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 112/285 (39%), Gaps = 36/285 (12%)
Query: 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233
+ Q++ G+ N M+N + G +K+ + + +++EKG+ D T++ L+SA +
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281
Query: 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL------------ 281
+ E +++ M +G Y T +G K G ++A V
Sbjct: 282 SKGLMEEAFELMNAMPG-KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDS 340
Query: 282 -----------RKSEVLMMHNKFS--RAYDFV---------ITQYAACGNKDDVLRVWKR 319
+K +V+ FS R+ D V ++ + GN D L +
Sbjct: 341 TTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNS 400
Query: 320 YKQ-NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL 378
K+ L N Y +I + + A + E + D+ N ++ C+R +
Sbjct: 401 VKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKM 460
Query: 379 LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
L +A+ L + R P+ T ++ G+ + + +E +K
Sbjct: 461 LGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQK 505
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 302 TQYAACGNKDDVLRVWKR-YKQNLKVY----------NRGYI-------CVISSLLKFDG 343
+ ++ CG+ D V + R Y Q K+ ++G+ +I SL++
Sbjct: 156 STFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGW 215
Query: 344 MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYL 403
+E A +++E + ++ N +++A C+ G + K T + + Q +G P++ T+
Sbjct: 216 VELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNT 275
Query: 404 MATGYLQNNQSEKGVEAMKKALVLLEA--GTRWKP 436
+ + Y S KG+ M++A L+ A G + P
Sbjct: 276 LISAY-----SSKGL--MEEAFELMNAMPGKGFSP 303
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
++++L K ME + + + + DI N LI AY +GL+ +A L+ +G
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425
P V T+ + G ++ + E+ E + L
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEML 332
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 151 LPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208
+P V Y ++L+ + ++AE+++++M +RG+ Y M+N + N +
Sbjct: 654 VPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFR 713
Query: 209 LMHEMEEKGIDCD 221
+ EM ++G D
Sbjct: 714 IHDEMLQRGFSPD 726
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 10/293 (3%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPS--VYIALLNAYACAKSAEKAEIIMQQMRDRGL 183
+ L+ ++ + +A F+ + + LP VY L++ + A +M R +
Sbjct: 323 IGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI 382
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGID 242
+ Y ++++ + Q G+ + L HEM KG++ D TF+ L++ C A +
Sbjct: 383 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 442
Query: 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS-EVLMMHNKFSRAYDFVI 301
M++A G + Y T G K G D A +L + ++ + N F+ Y+ ++
Sbjct: 443 VHNHMIQA--GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT--YNSIV 498
Query: 302 TQYAACGNKDDVLRVWKRYK-QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLC 360
GN ++ +++ ++ L Y ++ + K M+ A++I +E + L
Sbjct: 499 NGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558
Query: 361 HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY-LQNN 412
I N L++ +C G+L E L+ +G PN T+ + Y ++NN
Sbjct: 559 PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNN 611
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 135/348 (38%), Gaps = 64/348 (18%)
Query: 120 ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQ 177
A I + + ++ I++A + K P V Y ++N Y +K +++
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306
Query: 178 MRDRGL-----------------------------------VKKTIDYNSMMNVYYQTGN 202
M+ +GL + T+ Y ++++ + + G+
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA 262
+ +EM + I D T++ ++S D K+ M +G+ D +
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFT 425
Query: 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRA--------YDFVITQYAACGNKDD-- 312
+GY KAG A V HN +A Y +I G+ D
Sbjct: 426 ELINGYCKAGHMKDAFRV---------HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 313 --VLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHL 369
+ +WK + N+ YN +++ L K +E A K+ E+E+ L D L
Sbjct: 477 ELLHEMWKIGLQPNIFTYNS----IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 370 IDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKG 417
+DAYC+ G + KA+ ++ + +G +P + T+ ++ G+ + E G
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDG 580
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 133/324 (41%), Gaps = 52/324 (16%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
+ L+N Y A + A + M G + Y ++++ + G+ + L+HEM
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274
+ G+ + +T++ +++ + + E K+V EA G+ D Y T Y K+G
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA-AGLNADTVTYTTLMDAYCKSGEM 542
Query: 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICV 334
DKA +L++ + K + + +N V
Sbjct: 543 DKAQEILKE-------------------------------MLGKGLQPTIVTFN-----V 566
Query: 335 ISSLLKFDGM-ESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL-R 392
+ + GM E EK+ ++ + + N L+ YC R L KA T IYK R
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNL-KAATAIYKDMCSR 625
Query: 393 GTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEA--GTRWKPSKECLAACL-GYYK 449
G P+ +T+ + G+ + MK+A L + G + S + + G+ K
Sbjct: 626 GVGPDGKTYENLVKGHCKARN-------MKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLK 678
Query: 450 KERDIEGADYFIKLLTGKEIISAD 473
+++ +E + F ++ +E ++AD
Sbjct: 679 RKKFLEAREVFDQM--RREGLAAD 700
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 111/260 (42%), Gaps = 19/260 (7%)
Query: 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFS-- 226
++A ++ M +G I Y++++N Y + G K+ L+ M+ KG+ + Y +
Sbjct: 263 KEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSI 322
Query: 227 --ILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284
+L C A E +++ +G++ D VY T G+ K G A +
Sbjct: 323 IGLLCRICKLAEAEEAFSEMIR-----QGILPDTVVYTTLIDGFCKRGDIRAASKFFYE- 376
Query: 285 EVLMMHNKFSR----AYDFVITQYAACGNKDDVLRVWKR-YKQNLKVYNRGYICVISSLL 339
MH++ Y +I+ + G+ + +++ + + L+ + + +I+
Sbjct: 377 ----MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432
Query: 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR 399
K M+ A ++ ++ LID C+ G L A L+++ G +PN+
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 492
Query: 400 TWYLMATGYLQNNQSEKGVE 419
T+ + G ++ E+ V+
Sbjct: 493 TYNSIVNGLCKSGNIEEAVK 512
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 350 IFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYL 409
+F E+ +C ++ N +I C+ G + +A L+ +L+G P+V ++ + GY
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 410 QNNQSEKG---VEAMKK 423
+ + +K +E MK+
Sbjct: 293 RFGELDKVWKLIEVMKR 309
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 34/360 (9%)
Query: 66 SMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125
S + L D+ +EG + ++I+ FR AL+ + K LTP+ +
Sbjct: 357 SALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALE---FYKKMEVLGLTPSVFHVH 413
Query: 126 LDLIA--KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC----------AKSAEKAEI 173
+ K Q E+A F+ S L N + C K+ E E+
Sbjct: 414 TIIQGWLKGQKHEEALKLFD--------ESFETGLANVFVCNTILSWLCKQGKTDEATEL 465
Query: 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233
+ +M RG+ + YN++M + + N + + EKG+ + YT+SIL+ C
Sbjct: 466 -LSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCF 524
Query: 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK- 292
D + ++V M + + ++ VY T +G K G + KA +L M+ K
Sbjct: 525 RNHDEQNALEVVNHMTSS-NIEVNGVVYQTIINGLCKVGQTSKARELLAN----MIEEKR 579
Query: 293 ---FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR-GYICVISSLLKFDGMESAE 348
+Y+ +I + G D + ++ N N Y +++ L K + M+ A
Sbjct: 580 LCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQAL 639
Query: 349 KIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408
++ +E +++ + DI LID +C+R + A L + G P+ + + +G+
Sbjct: 640 EMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGF 699
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 47/301 (15%)
Query: 154 VYIALLNAYACAKSAEKA-EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212
VY ++N KA E++ + ++ L + YNS+++ +++ G + E
Sbjct: 550 VYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEE 609
Query: 213 MEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA--DRGVVLDWTVYATAASGYVK 270
M GI + T++ L++ + +D+ + M + ++GV LD Y G+ K
Sbjct: 610 MCGNGISPNVITYTSLMNGLCKNNR---MDQALEMRDEMKNKGVKLDIPAYGALIDGFCK 666
Query: 271 AGLSDKALAVLRKSEVLMMH-NKFSRAYDFVITQYAACGNKDDVLRVWKR-YKQNLKVYN 328
+ A A+ SE+L N Y+ +I+ + GN L ++K+ K L+
Sbjct: 667 RSNMESASALF--SELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDL 724
Query: 329 RGYICVISSLLKFDG-----------MESAE-------------------------KIFE 352
Y +I LLK DG M++ K+FE
Sbjct: 725 GTYTTLIDGLLK-DGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFE 783
Query: 353 EWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412
E + N+ ++ I N +I + R G L +A L + +G P+ T+ ++ +G + N
Sbjct: 784 EMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSGQVGNL 843
Query: 413 Q 413
Q
Sbjct: 844 Q 844
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 148 KLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207
KL +P+ Y AL++ + + E A + ++ + GL YNS+++ + GN
Sbjct: 651 KLDIPA-YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAAL 709
Query: 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI--DKIVAMMEADRGVVLDWTVYATAA 265
L +M + G+ CD T++ L+ DG I ++ M+A G+V D +Y
Sbjct: 710 DLYKKMLKDGLRCDLGTYTTLIDGL--LKDGNLILASELYTEMQA-VGLVPDEIIYTVIV 766
Query: 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRA--YDFVITQYAACGNKDDVLRV 316
+G K G + + V++ E + +N Y+ VI + GN D+ R+
Sbjct: 767 NGLSKKG---QFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRL 816
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 100/271 (36%), Gaps = 37/271 (13%)
Query: 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG 217
LLNAY+ + + A I+ QM + ++ N ++ Q + + L M G
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228
Query: 218 IDCDKYTFSILLSACA-AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK 276
+D D T +L+ A E ++ + +E RG D +Y+ A K
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIE--RGAEPDSLLYSLAVQACCKTLDLAM 286
Query: 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336
A ++LR+ + + Y VI GN DD +R+
Sbjct: 287 ANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLK------------------- 327
Query: 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396
+E S + ++ LI +C+ L A L K + G P
Sbjct: 328 ---------------DEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSP 372
Query: 397 NVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427
N T+ ++ + +N + EK +E KK VL
Sbjct: 373 NSVTFSVLIEWFRKNGEMEKALEFYKKMEVL 403
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 145 VPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204
VP+++ +Y ++N + K + ++M+ + + YN+++ +Y+ GN
Sbjct: 756 VPDEI----IYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLD 811
Query: 205 KLDSLMHEMEEKGIDCDKYTFSILLSA 231
+ L EM +KGI D TF IL+S
Sbjct: 812 EAFRLHDEMLDKGILPDGATFDILVSG 838
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 18/293 (6%)
Query: 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212
SVY AL+N + A +M++M ++G+ I Y++++NV +G + S + +
Sbjct: 247 SVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306
Query: 213 MEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTV--YATAASGYVK 270
M ++G + YT S L+ C G D + + RG L V Y T G+
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFL--RGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCS 364
Query: 271 AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY-----KQNLK 325
G KA++V E + R Y +I +A G+ D + +W + N+
Sbjct: 365 HGNIVKAVSVFSHMEEIGCSPNI-RTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVV 423
Query: 326 VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385
VY ++ +L + + AE + E N + N I C G L AE +
Sbjct: 424 VYTN----MVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKV 479
Query: 386 IYK-AQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS 437
+ Q PN+ T+ + G + N+ E EA + G W S
Sbjct: 480 FRQMEQQHRCPPNIVTYNELLDGLAKANRIE---EAYGLTREIFMRGVEWSSS 529
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/306 (18%), Positives = 123/306 (40%), Gaps = 38/306 (12%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
++I++++ Y AE+A + ++++ G YN +++ + + + +M
Sbjct: 113 LFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDM 172
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
+ G + + +T+++LL A + +G K++ M +++G D Y T S + GL
Sbjct: 173 KRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM-SNKGCCPDAVSYTTVISSMCEVGL 231
Query: 274 SDKALAVLRKSEVLM-----MHNKFSRAYDF------------------VI---TQYAAC 307
+ + + E ++ + N + +D+ VI T
Sbjct: 232 VKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVL 291
Query: 308 GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK--------FDGMESAEKIFEEWESRNL 359
N + + Q LK I +SSL+K FD ++ ++ + L
Sbjct: 292 CNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGF---GL 348
Query: 360 CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419
++ N L+ +C G + KA ++ + G PN+RT+ + G+ + + V
Sbjct: 349 QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVY 408
Query: 420 AMKKAL 425
K L
Sbjct: 409 IWNKML 414
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 128/290 (44%), Gaps = 15/290 (5%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGL 183
+D + K + + A +F + K P+V Y AL+N + A ++ M + +
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
I Y+++++ + + G + L EM ID D T+S L++ + ++
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK-SEVLMMHNKFSRAYDFVIT 302
+ +M +G + D Y T +G+ KA + + + R+ S+ ++ N + Y+ +I
Sbjct: 317 MFDLM-VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT--YNTLIQ 373
Query: 303 QYAACGNKDDVLRVWKR-----YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357
+ G+ D + + ++ YN ++ L +E A IFE+ + R
Sbjct: 374 GFFQAGDVDKAQEFFSQMDFFGISPDIWTYN----ILLGGLCDNGELEKALVIFEDMQKR 429
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATG 407
+ DI +I C+ G + +A +L L+G +P++ T+ M +G
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 32/294 (10%)
Query: 146 PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKK 205
P+++ + S L+N + A ++ +M + G + YN++++ +T
Sbjct: 153 PDRVTIGS----LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVND 208
Query: 206 LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAA 265
E+E KGI + T++ L++ +S ++++ M + + + Y+
Sbjct: 209 AFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALL 267
Query: 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG----------NKDDVLR 315
+VK G VL E+ + S D V G N+ L
Sbjct: 268 DAFVKNG------KVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 316 VWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR 375
V K ++ YN +I+ K +E K+F E R L + N LI + +
Sbjct: 322 VSKGCLADVVSYNT----LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377
Query: 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLE 429
G + KA+ + G P++ T+ ++ G N + E KALV+ E
Sbjct: 378 AGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELE-------KALVIFE 424
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 38/227 (16%)
Query: 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVA 246
+D+N +++ + Y + SL +ME GI D YTF+I+++ C + +
Sbjct: 86 VDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGK 145
Query: 247 MMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAA 306
M++ G D + +G+ + N+ S A V
Sbjct: 146 MLKL--GYEPDRVTIGSLVNGFCR-------------------RNRVSDAVSLV------ 178
Query: 307 CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366
D ++ + YK ++ YN +I SL K + A F+E E + + ++
Sbjct: 179 ----DKMVEIG--YKPDIVAYN----AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228
Query: 367 NHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413
L++ C A L+ + PNV T+ + +++N +
Sbjct: 229 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 54/376 (14%)
Query: 111 KKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSA 168
KK F +T + + K+ +E+ + + E P++Y L+N A
Sbjct: 179 KKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFV 238
Query: 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228
+ AE + + M + + YN+M+ Y + G +K + +ME +G + DK T+ +
Sbjct: 239 DSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTM 298
Query: 229 LSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLM 288
+ AC A SD + M+ ++G+ + ++ G K G ++ V
Sbjct: 299 IQACYADSDFGSCVALYQEMD-EKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFEN----- 352
Query: 289 MHNKFSRA----YDFVITQYAACGNKDDVLRVWKRY-KQNLKVYNRGYICVISSLLK--- 340
M K S+ Y +I YA G+ +D +R+ R + K Y V++ L K
Sbjct: 353 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 412
Query: 341 ------------FDGM--------------------ESAEKIFEEWESRNLCHDIRIPNH 368
FDG+ + AE++FEE + D N
Sbjct: 413 VEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNA 472
Query: 369 LIDAYCRRGLLHKAETLIYK-AQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427
LIDA+ + + +A L + + G + V T+ ++ +G + +++E EA+K ++
Sbjct: 473 LIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNE---EALKLWDMM 529
Query: 428 LEAGTRWKPSKECLAA 443
++ G P+ C A
Sbjct: 530 IDKGI--TPTAACFRA 543
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 130/279 (46%), Gaps = 13/279 (4%)
Query: 152 PSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209
P+V + L++++ +A+ ++++M RG+ TI YNS+++ + + ++ +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 210 MHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268
+ M KG D D TF+IL++ C A +G++ M + RGV+ + Y T G+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM--SLRGVIANTVTYNTLVQGF 448
Query: 269 VKAGLSDKALAVLRKSEVLMMHNKFSR---AYDFVITQYAACGNKDDVLRVWKRYKQNLK 325
++G L V +K M+ + +Y ++ G + L ++ + +++
Sbjct: 449 CQSG----KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504
Query: 326 VYNRG-YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAET 384
+ G Y+ +I + ++ A +F + + D R N +I CR+ L KA+
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564
Query: 385 LIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
L K G P+ T+ ++ +L ++ + E +++
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 107/267 (40%), Gaps = 36/267 (13%)
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
L+N A +++ +M + G + Y ++NV ++G L+ +MEE+
Sbjct: 198 TLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Query: 217 GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK 276
I D +SI++ + + ME +G D Y T G+ AG D
Sbjct: 258 NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI-KGFKADIITYNTLIGGFCNAGRWDD 316
Query: 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336
+LR M+ K S V+T + +I
Sbjct: 317 GAKLLRD----MIKRKISPN---VVT----------------------------FSVLID 341
Query: 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396
S +K + A+++ +E R + + N LID +C+ L +A ++ +G +P
Sbjct: 342 SFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 397 NVRTWYLMATGYLQNNQSEKGVEAMKK 423
++ T+ ++ GY + N+ + G+E ++
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFRE 428
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 140/339 (41%), Gaps = 18/339 (5%)
Query: 136 EQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSM 193
+ A F + + LP+V + L +A A K E + +QM +G+ + M
Sbjct: 70 DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129
Query: 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA----CAAASDGEGIDKIVAMME 249
+N + + S M ++ + G + D F+ LL+ C + E +D++V M
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH 189
Query: 250 ADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN 309
+ L+ V +G V SD + + R E N+ + Y V+ G
Sbjct: 190 KPTLITLNTLVNGLCLNGKV----SDAVVLIDRMVETGFQPNEVT--YGPVLNVMCKSGQ 243
Query: 310 KDDVLRVWKRYKQ-NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNH 368
+ + ++ ++ N+K+ Y +I L K +++A +F E E + DI N
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNT 303
Query: 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLL 428
LI +C G L+ R PNV T+ ++ +++ + + + +K+ ++
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKE---MM 360
Query: 429 EAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467
+ G P+ + + + KE +E A + L+ K
Sbjct: 361 QRGI--APNTITYNSLIDGFCKENRLEEAIQMVDLMISK 397
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGL 183
+D K +E+A + + K P + + L+N Y A + + ++M RG+
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
+ T+ YN+++ + Q+G + L EM + + D ++ ILL + E +
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALE 494
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
I +E + + LD +Y G A D A
Sbjct: 495 IFGKIEKSK-MELDIGIYMIIIHGMCNASKVDDA 527
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 40/307 (13%)
Query: 134 GIEQAASYFNCVPEKLKLPS---VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDY 190
G +A + V KL + S V ++L YA + A ++MR+R + I +
Sbjct: 195 GDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDV----IAW 250
Query: 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL------LSACAAASDGEGIDKI 244
NS++ Y Q G +++ L+ EME++GI T++IL L C AA D +
Sbjct: 251 NSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMD------L 304
Query: 245 VAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304
+ ME G+ D + SG + G+ +AL + RK + + A +++
Sbjct: 305 MQKMET-FGITADVFTWTAMISGLIHNGMRYQALDMFRK---MFLAGVVPNAVT-IMSAV 359
Query: 305 AAC--------GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356
+AC G++ + V + ++ V N ++ K +E A K+F+ ++
Sbjct: 360 SACSCLKVINQGSEVHSIAVKMGFIDDVLVGNS----LVDMYSKCGKLEDARKVFDSVKN 415
Query: 357 RNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416
+ D+ N +I YC+ G KA L + Q PN+ TW M +GY++N +
Sbjct: 416 K----DVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGE 471
Query: 417 GVEAMKK 423
++ ++
Sbjct: 472 AMDLFQR 478
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 26/313 (8%)
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
+L++ Y+ E A + +++ K +NSM+ Y Q G K L M++
Sbjct: 392 SLVDMYSKCGKLEDARKVFDSVKN----KDVYTWNSMITGYCQAGYCGKAYELFTRMQDA 447
Query: 217 GIDCDKYTFSILLSACAAASD-GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275
+ + T++ ++S D GE +D + ME D V + + +GY++ G D
Sbjct: 448 NLRPNIITWNTMISGYIKNGDEGEAMD-LFQRMEKDGKVQRNTATWNLIIAGYIQNGKKD 506
Query: 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY----KQNLKVYNRGY 331
+AL + RK M ++F +++ AC N V + + ++NL +
Sbjct: 507 EALELFRK----MQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVK 562
Query: 332 ICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391
+ + K +E + IF E++ DI N LI Y G A L + +
Sbjct: 563 NALTDTYAKSGDIEYSRTIFLGMETK----DIITWNSLIGGYVLHGSYGPALALFNQMKT 618
Query: 392 RGTEPNVRTW--YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYK 449
+G PN T ++A G + N V+ KK + P+ E +A + Y
Sbjct: 619 QGITPNRGTLSSIILAHGLMGN------VDEGKKVFYSIANDYHIIPALEHCSAMVYLYG 672
Query: 450 KERDIEGADYFIK 462
+ +E A FI+
Sbjct: 673 RANRLEEALQFIQ 685
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 31/366 (8%)
Query: 64 NDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPA-DV 122
+DS+ LLD V+ +Q R+ I F L I + S F+ A
Sbjct: 144 SDSLTLLLDHLVK------TKQFRVTINVF---------LNILESDFRPSKFMYGKAIQA 188
Query: 123 AIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRD 180
A++L + K G+E FN + PSV+I L++ K AE + +M
Sbjct: 189 AVKLSDVGK--GLE----LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLA 242
Query: 181 RGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG 240
R L+ I YN++++ Y + GN +K + M+ I+ TF+ LL A E
Sbjct: 243 RRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVED 302
Query: 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFV 300
+ ++ M+ D G V D ++ GY ++KA A L E + AY
Sbjct: 303 AENVLKEMK-DLGFVPDAFTFSILFDGYSS---NEKAEAALGVYETAVDSGVKMNAYTCS 358
Query: 301 ITQYAAC--GNKDDVLRVWKRYKQNLKVYNRG-YICVISSLLKFDGMESAEKIFEEWESR 357
I A C G + + R V N Y +I + + A E E +
Sbjct: 359 ILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ 418
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKG 417
+ D N LI +C G + AE + K +L+G P+V T+ ++ GY + + +K
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 418 VEAMKK 423
+ +K+
Sbjct: 479 FDILKE 484
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 132/284 (46%), Gaps = 11/284 (3%)
Query: 124 IRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDR 181
+ +D + K + + A F+ + + LPS+ Y L++ Y A + EK+ + ++M+
Sbjct: 219 VLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKAD 278
Query: 182 GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI 241
+ I +N+++ ++ G + ++++ EM++ G D +TFSIL ++ E
Sbjct: 279 HIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAA 338
Query: 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL-RKSEVLMMHNKFSRAYDFV 300
+ D GV ++ + + K G +KA +L R+ ++ N+ Y+ +
Sbjct: 339 LGVYETA-VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEV--IYNTM 395
Query: 301 ITQYAACGNKDDV---LRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357
I Y C D V +++ KQ +K + Y C+I + ME+AEK + + +
Sbjct: 396 IDGY--CRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLK 453
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401
+ + N LI Y R+ K ++ + + GT PNV ++
Sbjct: 454 GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 7/254 (2%)
Query: 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG 217
LLNA EKAE I+ + +GLV + YN+M++ Y + G+ + ME++G
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419
Query: 218 IDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277
+ D ++ L+ + E +K V M+ +GV Y GY + DK
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKL-KGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 278 LAVLRKSE-VLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN--RGYICV 334
+L++ E M N S Y +I G+K ++ KR ++ V R Y +
Sbjct: 479 FDILKEMEDNGTMPNVVS--YGTLINCLCK-GSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT 394
I +E A + +E + + ++ N LID G L +AE L+ + +G
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595
Query: 395 EPNVRTWYLMATGY 408
+P+V T+ + +GY
Sbjct: 596 KPDVFTYNSLISGY 609
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 19/242 (7%)
Query: 152 PSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209
PSV Y L+ Y +K I+++M D G + + Y +++N + + +
Sbjct: 457 PSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIV 516
Query: 210 MHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYV 269
+ME++G+ +++L+ C + E + M +G+ L+ Y T G
Sbjct: 517 KRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLS 575
Query: 270 KAG-LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQN----- 323
G LS+ +L S + + F+ Y+ +I+ Y GN + +++ K++
Sbjct: 576 MTGKLSEAEDLLLEISRKGLKPDVFT--YNSLISGYGFAGNVQRCIALYEEMKRSGIKPT 633
Query: 324 LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383
LK Y+ ++ SL +G+E E++F E +L D+ + N ++ Y G + KA
Sbjct: 634 LKTYH-----LLISLCTKEGIELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAF 685
Query: 384 TL 385
L
Sbjct: 686 NL 687
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 23/270 (8%)
Query: 151 LPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208
+P+V Y L+N +A+I+ + M DRG+ K YN +++ G +
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFR 550
Query: 209 LMHEMEEKGIDCDKYTFSIL---LSACAAASDGEGIDKIVAMMEADR-GVVLDWTVYATA 264
EM +KGI+ + T++ L LS S+ E + ++E R G+ D Y +
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDL-----LLEISRKGLKPDVFTYNSL 605
Query: 265 ASGYVKAGLSDKALAV---LRKSEVLMMHNKFSRAYDFVITQYAACGNK-DDVLRVWKRY 320
SGY AG + +A+ +++S + + Y +I+ G + + L
Sbjct: 606 ISGYGFAGNVQRCIALYEEMKRSGI----KPTLKTYHLLISLCTKEGIELTERLFGEMSL 661
Query: 321 KQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLH 380
K +L VYN V+ ME A + ++ +++ D N LI + G L
Sbjct: 662 KPDLLVYNG----VLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLC 717
Query: 381 KAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410
+ +LI + R EP T+ ++ G+ +
Sbjct: 718 EVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 133 QGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+GIE F + K L VY +L+ YA EKA + +QM ++ + YNS
Sbjct: 647 EGIELTERLFGEMSLKPDL-LVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNS 705
Query: 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD 237
++ + G ++ SL+ EM + ++ + T++I++ D
Sbjct: 706 LILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKD 750
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 154/382 (40%), Gaps = 53/382 (13%)
Query: 70 LLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI 129
+ D V++G +D + + + +R L+I M S +T + I ++ +
Sbjct: 176 VFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVD-SGVKITVYSLTIVVEGL 234
Query: 130 AKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRDRGLVKKT 187
+ +E++ K P Y ++NAY + E +++ M+ G+V
Sbjct: 235 CRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNK 294
Query: 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS----------------- 230
+ Y +M + + G + L EM E+GI+ D + ++ L+S
Sbjct: 295 VTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDE 354
Query: 231 ------ACAAASDGEGIDKIVAMME-----------ADRGVVLDWTVYATAASGYVKAGL 273
+ ++ + G ID + + E +GV + V+ T GY + G+
Sbjct: 355 LTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGM 414
Query: 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ--------NLK 325
D+A + +M K +A F A+C N+ L+ + KQ +K
Sbjct: 415 VDEASMIYD-----VMEQKGFQADVFTCNTIASCFNR---LKRYDEAKQWLFRMMEGGVK 466
Query: 326 VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385
+ Y +I K +E A+++F E S+ + + N +I AYC++G + +A L
Sbjct: 467 LSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKL 526
Query: 386 IYKAQLRGTEPNVRTWYLMATG 407
+ G +P+ T+ + G
Sbjct: 527 RANMEANGMDPDSYTYTSLIHG 548
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 142 FNCVPEKLKLPSV-YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200
F + +KL +V Y L++ Y + E+A+ + +M +G+ I YN M+ Y +
Sbjct: 458 FRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQ 517
Query: 201 GNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWT 259
G K+ L ME G+D D YT++ L+ C A + E + M +G+ +
Sbjct: 518 GKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM--GLKGLDQNSV 575
Query: 260 VYATAASGYVKAGLSDKALAV 280
Y SG KAG SD+A +
Sbjct: 576 TYTVMISGLSKAGKSDEAFGL 596
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 5/164 (3%)
Query: 177 QMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236
+M + G+ T+ Y ++++VY + GN ++ L EM KG+ + T+++++ A
Sbjct: 459 RMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQG 518
Query: 237 DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV-LMMHNKFSR 295
+ K+ A MEA+ G+ D Y + G A D+A+ + SE+ L ++ S
Sbjct: 519 KIKEARKLRANMEAN-GMDPDSYTYTSLIHGECIADNVDEAMRLF--SEMGLKGLDQNSV 575
Query: 296 AYDFVITQYAACGNKDDVLRVWKRYK-QNLKVYNRGYICVISSL 338
Y +I+ + G D+ ++ K + + N+ Y +I S+
Sbjct: 576 TYTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGSM 619
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 42/238 (17%)
Query: 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233
I ++M D G+ ++ + G +K L+ E KGI + YT++ +++A
Sbjct: 211 IFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYV 270
Query: 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG-LSD--KALAVLRKSEVLMMH 290
D G++ ++ +M+ D GVV + Y VK G +SD K +R+
Sbjct: 271 KQRDFSGVEGVLKVMKKD-GVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRE------- 322
Query: 291 NKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKI 350
R + + Y + L W K N+K R ++ +
Sbjct: 323 ----RGIESDVHVYTS-------LISWNCRKGNMK---RAFL-----------------L 351
Query: 351 FEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408
F+E + L LID C+ G + AE L+ + Q +G + + GY
Sbjct: 352 FDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGY 409
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 121/274 (44%), Gaps = 17/274 (6%)
Query: 134 GIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSM 193
G AS +P L Y L+ AY +K + A ++ QM +RG + Y +
Sbjct: 366 GFLDEASKKGLIPNNLS----YAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGIL 421
Query: 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRG 253
++ +G+ ++ ++ ++G+ D +++L+S + + M DR
Sbjct: 422 IHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEM-LDRN 480
Query: 254 VVLDWTVYATAASGYVKAGLSDKA-----LAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308
++ D VYAT G++++G D+A L+V + +V ++H ++ +I + G
Sbjct: 481 ILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVH------HNAMIKGFCRSG 534
Query: 309 NKDDVLRVWKRYKQNLKVYNR-GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPN 367
D+ L R + V ++ Y +I +K M +A KIF E ++
Sbjct: 535 MLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYT 594
Query: 368 HLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401
LI+ +C +G AE + QLR PNV T+
Sbjct: 595 SLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTY 628
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 46/283 (16%)
Query: 143 NCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202
+C P+ + Y L+N E A + + +GL+ + Y ++ Y ++
Sbjct: 340 DCKPDV----ATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKE 395
Query: 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD-GEGIDKIVAMMEADRGVVLDWTVY 261
Y L+ +M E+G D T+ IL+ + + ++ V ++ DRGV D +Y
Sbjct: 396 YDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLI--DRGVSPDAAIY 453
Query: 262 ATAASGYVKAG--LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319
SG K G L K L FS D
Sbjct: 454 NMLMSGLCKTGRFLPAKLL--------------FSEMLD--------------------- 478
Query: 320 YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLL 379
+N+ Y +I ++ + A K+F + + D+ N +I +CR G+L
Sbjct: 479 --RNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGML 536
Query: 380 HKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMK 422
+A + + P+ T+ + GY++ ++ +
Sbjct: 537 DEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/327 (19%), Positives = 130/327 (39%), Gaps = 64/327 (19%)
Query: 144 CVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY 203
C+P + Y ++ Y E A ++ ++++ +G + + +M+N + + G++
Sbjct: 236 CIPNIV----FYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDF 291
Query: 204 KKLDSLMHEMEEKGI---------------------------------DC--DKYTFSIL 228
D L+ E++E+G+ DC D T++IL
Sbjct: 292 VASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNIL 351
Query: 229 LSACAAASDGEGIDKIVAMMEADR-GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287
++ +G+ + + EA + G++ + YA Y K+ D A +L L
Sbjct: 352 INR--LCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLL-----L 404
Query: 288 MMHNKFSR----AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG-------YICVIS 336
M + + Y +I G+ DD + + +K+ +RG Y ++S
Sbjct: 405 QMAERGCKPDIVTYGILIHGLVVSGHMDDAVNM------KVKLIDRGVSPDAAIYNMLMS 458
Query: 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396
L K A+ +F E RN+ D + LID + R G +A + + +G +
Sbjct: 459 GLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKV 518
Query: 397 NVRTWYLMATGYLQNNQSEKGVEAMKK 423
+V M G+ ++ ++ + M +
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNR 545
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 297 YDFVITQY------AACGNKDDVLRVWKRYKQNLKVYN----RG------YICVISSLLK 340
YD+V+ Y AC + +L +R KVY+ RG C++ +
Sbjct: 157 YDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMC 216
Query: 341 FDG-MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR 399
+G +E K+ E + +I N +I YC+ G + A + + +L+G P +
Sbjct: 217 NEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLE 276
Query: 400 TWYLMATGYLQ 410
T+ M G+ +
Sbjct: 277 TFGTMINGFCK 287
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 75 VEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG 134
VE+G +D+ +IK F AL M ++ + V + +D K Q
Sbjct: 512 VEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE-HLVPDKFTYSTIIDGYVKQQD 570
Query: 135 IEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+ A F + + P+V Y +L+N + C + AE ++M+ R LV + Y +
Sbjct: 571 MATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTT 630
Query: 193 MM 194
++
Sbjct: 631 LI 632
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 129/289 (44%), Gaps = 17/289 (5%)
Query: 122 VAIRLDLIAKVQGIEQAASYFN------CVPEKLKLPSVYIALLNAYACAKSAEKAEIIM 175
V I +D + K Q +++A + F C P+++ + +L++ + A +
Sbjct: 415 VNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEI----TFCSLIDGLGKVGRVDDAYKVY 470
Query: 176 QQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235
++M D +I Y S++ ++ G + + +M + D + + A
Sbjct: 471 EKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA 530
Query: 236 SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL--RKSEVLMMHNKF 293
+ E + ++A R V D Y+ G +KAG +++ + K + ++
Sbjct: 531 GEPEKGRAMFEEIKARR-FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD--- 586
Query: 294 SRAYDFVITQYAACGNKDDVLRVWKRYK-QNLKVYNRGYICVISSLLKFDGMESAEKIFE 352
+RAY+ VI + CG + ++ + K + + Y VI L K D ++ A +FE
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646
Query: 353 EWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401
E +S+ + ++ I + LID + + G + +A ++ + +G PN+ TW
Sbjct: 647 EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTW 695
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 10/256 (3%)
Query: 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212
S Y L+ A++ ++ + QQM++ G + +++ + + G SL+ E
Sbjct: 169 SAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE 228
Query: 213 MEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG 272
M+ +D D +++ + + + K +EA+ G+ D Y + KA
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKAN 287
Query: 273 LSDKALAVLRKSEVLMMHNK---FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR 329
D+A+ + E N+ + AY+ +I Y + G D+ + +R + + +
Sbjct: 288 RLDEAVEMFEHLE----KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSV 343
Query: 330 -GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388
Y C+++ L K ++ A K+FEE + ++ ++ N LID CR G L A L
Sbjct: 344 IAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDS 402
Query: 389 AQLRGTEPNVRTWYLM 404
Q G PNVRT +M
Sbjct: 403 MQKAGLFPNVRTVNIM 418
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 140/356 (39%), Gaps = 26/356 (7%)
Query: 65 DSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI 124
D+ L D + G ++ + I++ + ++ A + M K V TP ++
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK---VCTPDEITF 450
Query: 125 --RLDLIAKVQGIEQAASYF------NCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQ 176
+D + KV ++ A + +C + VY +L+ + E I +
Sbjct: 451 CSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSI----VYTSLIKNFFNHGRKEDGHKIYK 506
Query: 177 QMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236
M ++ N+ M+ ++ G +K ++ E++ + D ++SIL+ A
Sbjct: 507 DMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAG 566
Query: 237 DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRA 296
++ M+ ++G VLD Y G+ K G +KA +L + +
Sbjct: 567 FANETYELFYSMK-EQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV-T 624
Query: 297 YDFVITQYAACGNKDDVLRVW-----KRYKQNLKVYNRGYICVISSLLKFDGMESAEKIF 351
Y VI A D+ ++ KR + N+ +Y+ +I K ++ A I
Sbjct: 625 YGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS----LIDGFGKVGRIDEAYLIL 680
Query: 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATG 407
EE + L ++ N L+DA + +++A + PN T+ ++ G
Sbjct: 681 EELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/416 (19%), Positives = 150/416 (36%), Gaps = 89/416 (21%)
Query: 65 DSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI 124
DS + LLD+ D+ + I F + A + + L P +V
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG---LKPDEVTY 276
Query: 125 R--LDLIAKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRD 180
+ ++ K +++A F + + ++P Y ++ Y A ++A ++++ R
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336
Query: 181 RGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC--DKYTFSILLSA-CAAA-- 235
+G + I YN ++ + G K+D + EE D + T++IL+ C A
Sbjct: 337 KGSIPSVIAYNCILTCLRKMG---KVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKL 393
Query: 236 -----------------------------SDGEGIDKIVAMMEA-DRGVVL-DWTVYATA 264
+ +D+ AM E D V D + +
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSL 453
Query: 265 ASGYVKAGLSDKALAVLRKSEVLMMHNKF---SRAYDFVITQYAACGNKDDVLRVWK--- 318
G K G D A V K M+ + S Y +I + G K+D +++K
Sbjct: 454 IDGLGKVGRVDDAYKVYEK----MLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI 509
Query: 319 --RYKQNLKVYN-------------------------------RGYICVISSLLKFDGME 345
+L++ N R Y +I L+K
Sbjct: 510 NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFAN 569
Query: 346 SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401
++F + + D R N +ID +C+ G ++KA L+ + + +G EP V T+
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTY 625
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 124/306 (40%), Gaps = 20/306 (6%)
Query: 107 MWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYAC 164
+ K+ VL I +D K + +A + K P+V Y ++++ A
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634
Query: 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT 224
++A ++ ++ + + + + Y+S+++ + + G + ++ E+ +KG+ + YT
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694
Query: 225 FSILLSACAAASD-GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK 283
++ LL A A + E + +M E + Y +G K +KA ++
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELK--CTPNQVTYGILINGLCKVRKFNKAFVFWQE 752
Query: 284 SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG-YICVISSLLKFD 342
+ M + +Y +I+ A GN + ++ R+K N V + Y +I L +
Sbjct: 753 MQKQGMKPS-TISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN 811
Query: 343 GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL----IYKAQLRGT---E 395
A +FEE R L P H LHK + L I A LR T
Sbjct: 812 RAMDAFSLFEETRRRGL------PIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKAR 865
Query: 396 PNVRTW 401
R+W
Sbjct: 866 HAARSW 871
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/359 (21%), Positives = 151/359 (42%), Gaps = 46/359 (12%)
Query: 152 PSVYI--ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL--- 206
P+V+ ++NA KA +M+ M+ G + YN++++ Y + G K+
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280
Query: 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAAS 266
D+++ EM E + + TF+IL+ + G K+ M D+ V + Y + +
Sbjct: 281 DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM-LDQDVKPNVISYNSLIN 339
Query: 267 GYVKAGLSDKALAVLRK--------------------------SEVLMMHNKF------- 293
G G +A+++ K E L M
Sbjct: 340 GLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVP 399
Query: 294 -SRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG-YICVISSLLKFDGMESAEKIF 351
+R Y+ +I Y G DD + + ++ V + G Y C+I+ L + +E+A+K+F
Sbjct: 400 TTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLF 459
Query: 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411
++ S+ L D+ + L++ YCR+G KA L+ + G +P T+ ++ GY +
Sbjct: 460 DQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK- 517
Query: 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII 470
E ++A +E R + + L Y ++ +E A+ + + K ++
Sbjct: 518 ---EGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLV 573
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396
+LLK + E +++E R + ++ N +I+A C+ G ++KA ++ ++ G P
Sbjct: 197 ALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSP 256
Query: 397 NVRTWYLMATGYLQ 410
NV ++ + GY +
Sbjct: 257 NVVSYNTLIDGYCK 270
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 21/303 (6%)
Query: 135 IEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+E+A S N + E P V Y ++++ A + QM + G+ + Y S
Sbjct: 158 MEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTS 217
Query: 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
++N +G ++ DSL+ M ++ I D TF+ L+ A +G+ +D E R
Sbjct: 218 LVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALID--AFVKEGKFLDAEELYNEMIR 275
Query: 253 -GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR----AYDFVITQYAAC 307
+ + Y + +G+ G D+A + +M K AY +I + C
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEA-----RQMFYLMETKGCFPDVVAYTSLINGFCKC 330
Query: 308 GNKDDVLRVWKRYKQNLKVYNR-GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366
DD ++++ Q N Y +I + A+++F SR + +IR
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390
Query: 367 NHLIDAYCRRGLLHKAETLIYKAQLR---GTEPNVRTWYLMATGYLQNNQSEKGV---EA 420
N L+ C G + KA + Q R G PN+ T+ ++ G N + EK + E
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFED 450
Query: 421 MKK 423
M+K
Sbjct: 451 MRK 453
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 132/320 (41%), Gaps = 22/320 (6%)
Query: 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YI 156
FS L +S W+ N+ I + + +Q +A F + E LPS+ +
Sbjct: 24 FSRLLDLSFWVRAFCNYR------EILRNGLHSLQ-FNEALDLFTHMVESRPLPSIIDFT 76
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
LLN A K + + ++ G+ N +MN + Q+ S + +M +
Sbjct: 77 KLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKL 136
Query: 217 GIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275
G + D TF+ L++ C E + + M+E G+ D +Y T K G +
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM--GIKPDVVMYTTIIDSLCKNGHVN 194
Query: 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACG---NKDDVLR--VWKRYKQNLKVYNRG 330
AL++ + E + Y ++ G + D +LR ++ K ++ +N
Sbjct: 195 YALSLFDQMENYGIRPDVV-MYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFN-- 251
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
+I + +K AE+++ E ++ +I LI+ +C G + +A + Y +
Sbjct: 252 --ALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLME 309
Query: 391 LRGTEPNVRTWYLMATGYLQ 410
+G P+V + + G+ +
Sbjct: 310 TKGCFPDVVAYTSLINGFCK 329
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 27/224 (12%)
Query: 70 LLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI 129
L+D +V+EG+ LD E+L + R S A I + + + F +
Sbjct: 253 LIDAFVKEGKFLDAEEL------YNEMIRMSIAPNIFTYTSLINGFCMEGC--------- 297
Query: 130 AKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKT 187
+++A F + K P V Y +L+N + K + A I +M +GL T
Sbjct: 298 -----VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352
Query: 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAM 247
I Y +++ + Q G + M +G+ + T+++LL + I
Sbjct: 353 ITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFED 412
Query: 248 MEADR--GVVLDWTVYATAASGYVKAGLSDKALAV---LRKSEV 286
M+ GV + Y G G +KAL V +RK E+
Sbjct: 413 MQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM 456
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 10/246 (4%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLM---H 211
Y +L+N + ++A + M +G + Y S++N + + KK+D M +
Sbjct: 285 YTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKC---KKVDDAMKIFY 341
Query: 212 EMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA 271
EM +KG+ + T++ L+ ++ + M RGV + Y
Sbjct: 342 EMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM-VSRGVPPNIRTYNVLLHCLCYN 400
Query: 272 GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC--GNKDDVLRVWKRY-KQNLKVYN 328
G KAL + + M + + + + C G + L V++ K+ + +
Sbjct: 401 GKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGI 460
Query: 329 RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388
Y +I + K +++A +F S+ + ++ +I R GL H+A L K
Sbjct: 461 ITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRK 520
Query: 389 AQLRGT 394
+ G
Sbjct: 521 MKEDGV 526
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
VI+ + KFD + + + + HD+ N L++ +C+ + A + + K G
Sbjct: 81 VIAKMKKFD---VVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTR 433
EP++ T+ + G+ N+ E EAM ++E G +
Sbjct: 138 FEPDIVTFTSLINGFCLGNRME---EAMSMVNQMVEMGIK 174
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 137/297 (46%), Gaps = 28/297 (9%)
Query: 152 PSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209
P V + AL++ + +AE + ++M RG+ T+ Y S+++ + + K + +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 210 MHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268
+ M KG + TF+IL++ C A +G++ M + RGVV D Y T G+
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKM--SLRGVVADTVTYNTLIQGF 432
Query: 269 VKAGLSDKALAVLRKSEVLMMHNKFSR----AYDFVITQYAACGNKDDVLRVWKRYKQNL 324
+ G + A + ++ M ++ R +Y ++ G + L ++++ +++
Sbjct: 433 CELGKLEVAKELFQE-----MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487
Query: 325 KVYNRGYICVISSLLKFDGMESAEKIFEEWES------RNLCHDIRIPNHLIDAYCRRGL 378
+ G +I GM +A K+ + W+ + + D++ N +I C++G
Sbjct: 488 MELDIGIYNII-----IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542
Query: 379 LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN---NQSEKGVEAMKKALVLLEAGT 432
L +A+ L K + G PN T+ ++ +L +S K +E +K+ ++A T
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 116/260 (44%), Gaps = 13/260 (5%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
+Y L+ + A + +++ M R + + ++++++ + + G ++ + L EM
Sbjct: 284 IYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273
++GI D T++ L+ + + + ++ +M +G + + +GY KA L
Sbjct: 344 IQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM-VSKGCGPNIRTFNILINGYCKANL 402
Query: 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYIC 333
D L + RK + + + Y+ +I + G L V K Q + V R
Sbjct: 403 IDDGLELFRKMSLRGVVAD-TVTYNTLIQGFCELGK----LEVAKELFQEM-VSRRVRPD 456
Query: 334 VISSLLKFDGM------ESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387
++S + DG+ E A +IFE+ E + DI I N +I C + A L
Sbjct: 457 IVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 516
Query: 388 KAQLRGTEPNVRTWYLMATG 407
L+G +P+V+T+ +M G
Sbjct: 517 SLPLKGVKPDVKTYNIMIGG 536
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 36/267 (13%)
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
AL+N A +++ +M + G + Y ++ V ++G L+ +MEE+
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 217 GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK 276
I D +SI++ + + ME +G D +Y T G+ AG D
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI-KGFKADIIIYTTLIRGFCYAGRWDD 300
Query: 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336
+LR M+ K + DV+ + +I
Sbjct: 301 GAKLLRD----MIKRKIT----------------PDVV---------------AFSALID 325
Query: 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396
+K + AE++ +E R + D LID +C+ L KA ++ +G P
Sbjct: 326 CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385
Query: 397 NVRTWYLMATGYLQNNQSEKGVEAMKK 423
N+RT+ ++ GY + N + G+E +K
Sbjct: 386 NIRTFNILINGYCKANLIDDGLELFRK 412
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 11/254 (4%)
Query: 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233
+ Q+M + ID++ + +V +T Y + L +ME KGI + YT SI+++ C
Sbjct: 59 LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC 118
Query: 234 AASD----GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM 289
+ KI+ + G D ++T +G G +AL ++ + V M
Sbjct: 119 RCRKLSLAFSAMGKIIKL-----GYEPDTVTFSTLINGLCLEGRVSEALELVDRM-VEMG 172
Query: 290 HNKFSRAYDFVITQYAACGN-KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAE 348
H + ++ G D VL + + + + Y V+ + K A
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 349 KIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408
++ + E R + D + +ID C+ G L A L + +++G + ++ + + G+
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292
Query: 409 LQNNQSEKGVEAMK 422
+ + G + ++
Sbjct: 293 CYAGRWDDGAKLLR 306
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 43/325 (13%)
Query: 106 SMWMTKKSNFVLTPADVAIRL--DLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNA 161
+M+ K +F +TP L + K IE A + +P +P++ Y +L
Sbjct: 176 AMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGG 235
Query: 162 YACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221
Y E A+ ++++M DRG Y +M+ Y + G + + ++M +ME+ I+ +
Sbjct: 236 YVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPN 295
Query: 222 KYTFSILLSA-CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAV 280
+ T+ +++ A C GE + M+E R + D ++ + D+A +
Sbjct: 296 EVTYGVMIRALCKEKKSGEARNMFDEMLE--RSFMPDSSLCCKVIDALCEDHKVDEACGL 353
Query: 281 LRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK 340
RK M+ N C + +L +I L K
Sbjct: 354 WRK----MLKNN--------------CMPDNALLST-----------------LIHWLCK 378
Query: 341 FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRT 400
+ A K+F+E+E ++ + N LI C +G L +A L R +PN T
Sbjct: 379 EGRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFT 437
Query: 401 WYLMATGYLQNNQSEKGVEAMKKAL 425
+ ++ G +N ++GV +++ L
Sbjct: 438 YNVLIEGLSKNGNVKEGVRVLEEML 462
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 157/368 (42%), Gaps = 24/368 (6%)
Query: 68 VPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR-- 125
V L+DQ V+ G D+ ++ L KR L +S+ KK ADV I
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNG--LCKRGDIDLALSLL--KKMEKGKIEADVVIYNT 263
Query: 126 -LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRG 182
+D + K + ++ A + F + K P V Y +L++ A ++ M +R
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323
Query: 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGI 241
+ + ++++++ + + G + + L EM ++ ID D +T+S L++ C E
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383
Query: 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK-SEVLMMHNKFSRAYDFV 300
M+ D + Y+T G+ KA ++ + + R+ S+ ++ N + Y +
Sbjct: 384 HMFELMISKD--CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT--YTTL 439
Query: 301 ITQYAACGNKDDVLRVWKR-----YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWE 355
I + + D+ V+K+ N+ YN ++ L K + A +FE +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYN----ILLDGLCKNGKLAKAMVVFEYLQ 495
Query: 356 SRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSE 415
+ DI N +I+ C+ G + L L+G PNV + M +G+ + E
Sbjct: 496 RSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Query: 416 KGVEAMKK 423
+ +KK
Sbjct: 556 EADSLLKK 563
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 109/254 (42%), Gaps = 20/254 (7%)
Query: 135 IEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+++A F + K P+V Y L+ + AK E+ + ++M RGLV T+ Y +
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438
Query: 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
+++ ++Q + + +M G+ + T++ILL +G+ +V R
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD--GLCKNGKLAKAMVVFEYLQR 496
Query: 253 GVV-LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKD 311
+ D Y G KAG + + + + AY+ +I+ + G+K+
Sbjct: 497 STMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVI-AYNTMISGFCRKGSKE 555
Query: 312 DVLRVWKRYKQNLKVYNRG-YICVISSLLKFDGMESAEKIFEEWES-------------R 357
+ + K+ K++ + N G Y +I + L+ E++ ++ +E S
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVT 615
Query: 358 NLCHDIRIPNHLID 371
N+ HD R+ +D
Sbjct: 616 NMLHDGRLDKSFLD 629
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 49/275 (17%)
Query: 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVA 246
+++N +++ + ++ + SL +M+ GI D YT+SI ++ C + + +
Sbjct: 84 VEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAK 143
Query: 247 MMEADRGVVLDWTVYATAASGYVKAG-LSDKALAVLRKSEV---------------LMMH 290
MM+ G D ++ +GY + +SD V + E+ L +H
Sbjct: 144 MMKL--GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201
Query: 291 NKFSRA------------------YDFVITQYAACGNKDDVLRVWKRYKQ-----NLKVY 327
NK S A Y V+ G+ D L + K+ ++ ++ +Y
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261
Query: 328 NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387
N +I L K+ M+ A +F E +++ + D+ + LI C G A L+
Sbjct: 262 NT----IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 317
Query: 388 KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMK 422
R PNV T+ + +++ K VEA K
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEG---KLVEAEK 349
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 107/278 (38%), Gaps = 54/278 (19%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
+ L++ A +A ++ QM RG + Y +++N + G+ SL+ +ME
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME 250
Query: 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274
+ I+ D +Y T G K
Sbjct: 251 KGKIEA------------------------------------DVVIYNTIIDGLCKYKHM 274
Query: 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC----GNKDDVLR-----VWKRYKQNLK 325
D AL + + M NK R F + +C G D R + ++ N+
Sbjct: 275 DDALNLFTE-----MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 326 VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385
++ +I + +K + AEK+++E R++ DI + LI+ +C L +A+ +
Sbjct: 330 TFS----ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 386 IYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+ PNV T+ + G+ + + E+G+E ++
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 133/310 (42%), Gaps = 17/310 (5%)
Query: 111 KKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK---LPSV--YIALLNAYACA 165
KK N V++P + + ++ A +N V E + P+V Y L+ +
Sbjct: 409 KKRNIVISPYTYGTVVKGMCSSGDLDGA---YNIVKEMIASGCRPNVVIYTTLIKTFLQN 465
Query: 166 KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTF 225
A ++++M+++G+ YNS++ + + S + EM E G+ + +T+
Sbjct: 466 SRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 525
Query: 226 SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285
+S AS+ DK V M + GV+ + + + Y K G +A + R
Sbjct: 526 GAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRS-- 582
Query: 286 VLMMHNKF---SRAYDFVITQYAACGNKDDVLRVWKRYK-QNLKVYNRGYICVISSLLKF 341
M+ ++ Y ++ DD +++ + + + Y +I+ K
Sbjct: 583 --MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640
Query: 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401
M+ A IF+E L ++ I N L+ +CR G + KA+ L+ + ++G PN T+
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Query: 402 YLMATGYLQN 411
+ GY ++
Sbjct: 701 CTIIDGYCKS 710
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 125/283 (44%), Gaps = 21/283 (7%)
Query: 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214
Y L+N ++ + +KA I +M + GL I YN ++ + ++G +K L+ EM
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689
Query: 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274
KG+ + T+ ++ + D ++ M+ +G+V D VY T G +
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL-KGLVPDSFVYTTLVDGCCRLNDV 748
Query: 275 DKALAVL--RKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR-----VWKRY-KQNLKV 326
++A+ + K F+ ++V ++ K +VL + R+ K N
Sbjct: 749 ERAITIFGTNKKGCASSTAPFNALINWVF-KFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 327 YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLI 386
YN +I L K +E+A+++F + ++ NL + L++ Y + G + +
Sbjct: 808 YN----IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 387 YKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLE 429
+A G EP+ + ++ +L+ + KALVL++
Sbjct: 864 DEAIAAGIEPDHIMYSVIINAFLKEGMT-------TKALVLVD 899
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 5/257 (1%)
Query: 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228
EKA+ + M GL+ + Y S++ Y + N ++ L+ EM+++ I YT+ +
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 229 LSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK-SEVL 287
+ ++ D +G IV M A G + +Y T +++ A+ VL++ E
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIAS-GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 288 MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQN-LKVYNRGYICVISSLLKFDGMES 346
+ + F Y+ +I + D+ +N LK Y IS ++ S
Sbjct: 483 IAPDIF--CYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFAS 540
Query: 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406
A+K +E + + + LI+ YC++G + +A + +G + +T+ ++
Sbjct: 541 ADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMN 600
Query: 407 GYLQNNQSEKGVEAMKK 423
G +N++ + E ++
Sbjct: 601 GLFKNDKVDDAEEIFRE 617
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 123/295 (41%), Gaps = 30/295 (10%)
Query: 149 LKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208
+ L Y L++ K E A+ ++ +M G+ Y+ +++ + N
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333
Query: 209 LMHEMEEKGIDCDKYTFSILLSACAAASDGEGI-DKIVAMMEA--DRGVVLDWTVYATAA 265
L+HEM GI+ Y + C EG+ +K A+ + G++ YA+
Sbjct: 334 LVHEMVSHGINIKPYMY----DCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLI 389
Query: 266 SGY-----VKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY 320
GY V+ G + L ++K +++ Y V+ + G+ D + K
Sbjct: 390 EGYCREKNVRQGY--ELLVEMKKRNIVIS----PYTYGTVVKGMCSSGDLDGAYNIVKEM 443
Query: 321 -----KQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR 375
+ N+ +Y +I + L+ A ++ +E + + + DI N LI +
Sbjct: 444 IASGCRPNVVIYTT----LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499
Query: 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ---SEKGVEAMKKALVL 427
+ +A + + + G +PN T+ +GY++ ++ ++K V+ M++ VL
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVL 554
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
++ +LL+++ ++ +++ RN+ D++ + LI A+CR G + + +++K
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFK----- 246
Query: 394 TEPNVRTWYLMATGYLQNNQS 414
TE RT L G L+ +S
Sbjct: 247 TEKEFRTATLNVDGALKLKES 267
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 38/291 (13%)
Query: 135 IEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192
+E A +Y + + ++ +P+ Y L++ E AEI+++++R++G+V ++ YN
Sbjct: 343 LEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 402
Query: 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252
++N Y Q G+ KK +L EM GI ++T++ L+ + D++ + +
Sbjct: 403 LINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKV-VGK 461
Query: 253 GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312
G+ D + T G+ G D+A ++L++ +++ + N DD
Sbjct: 462 GMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI-------------------NPDD 502
Query: 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDA 372
V YN C++ L E A ++ E + R + D N LI
Sbjct: 503 V------------TYN----CLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISG 546
Query: 373 YCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
Y ++G A + + G P + T+ + G +N + E E +++
Sbjct: 547 YSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLRE 597
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 138/314 (43%), Gaps = 26/314 (8%)
Query: 170 KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229
+A ++++M++ GLV ++ YN ++ G+ + + EM ++G+ YT++ L+
Sbjct: 310 RASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLI 369
Query: 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM 289
+ E + ++ + ++G+VLD Y +GY + G + KA A+ + +M
Sbjct: 370 HGLFMENKIEAAEILIREIR-EKGIVLDSVTYNILINGYCQHGDAKKAFAL---HDEMMT 425
Query: 290 HNKFSRAYDFVITQYAAC-GNK----DDVLR--VWKRYKQNLKVYNR---GYICVISSLL 339
+ + Y C NK D++ V K K +L + N G+ C I +
Sbjct: 426 DGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGH-CAIGN-- 482
Query: 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR 399
M+ A + +E + ++ D N L+ C G +A L+ + + RG +P+
Sbjct: 483 ----MDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI 538
Query: 400 TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY 459
++ + +GY + ++ + L L + P+ A L K ++ E A+
Sbjct: 539 SYNTLISGYSKKGDTKHAFMVRDEMLSL-----GFNPTLLTYNALLKGLSKNQEGELAEE 593
Query: 460 FIKLLTGKEIISAD 473
++ + + I+ D
Sbjct: 594 LLREMKSEGIVPND 607
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213
Y L+ E+A +M +M+ RG+ I YN++++ Y + G+ K + EM
Sbjct: 504 TYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEM 563
Query: 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATA 264
G + T++ LL + +GE ++++ M+++ G+V + + + +
Sbjct: 564 LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSE-GIVPNDSSFCSV 613
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 39/283 (13%)
Query: 178 MRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD 237
M+++G KT N ++ + + + +M I + YTF+I+++
Sbjct: 181 MKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK 240
Query: 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL---------------- 281
+ + +ME G+ Y T G+ G + A ++
Sbjct: 241 LKKAKGFLGIMEV-FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYN 299
Query: 282 ----------RKSEVLMMHNKF-----SRAYDFVITQYAACGNKDDVLRVW----KRYKQ 322
R SEVL + S +Y+ +I C N D+ + + KQ
Sbjct: 300 PILSWMCNEGRASEVLREMKEIGLVPDSVSYNILI---RGCSNNGDLEMAFAYRDEMVKQ 356
Query: 323 NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKA 382
+ Y +I L + +E+AE + E + + D N LI+ YC+ G KA
Sbjct: 357 GMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKA 416
Query: 383 ETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425
L + G +P T+ + + N++ + E +K +
Sbjct: 417 FALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 162/395 (41%), Gaps = 37/395 (9%)
Query: 42 ISLRKGSSMYKLYRMLSPM--GDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRF 99
+ L G S+ L +L+ G+ V L+DQ VE G D ++ + +
Sbjct: 137 MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKA 196
Query: 100 SHALQISMWMTKKSNFVLTPADVAIRLDLI---AKVQGI------EQAASYFNCVPEKLK 150
S A+ + M K + DL+ A + G+ + A + N + EK K
Sbjct: 197 SEAVALVERMVVK----------GCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGK 245
Query: 151 LPS---VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207
+ + +Y +++ K + A + +M +G+ YN +++ G +
Sbjct: 246 IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDAS 305
Query: 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267
L+ +M EK I+ D F+ L+ A +K+ M + D Y T G
Sbjct: 306 RLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKG 365
Query: 268 YVKAGLSDKALAVLRK-SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR-----YK 321
+ K ++ + V R+ S+ ++ N + Y +I + + D+ V+K+
Sbjct: 366 FCKYKRVEEGMEVFREMSQRGLVGNTVT--YTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423
Query: 322 QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381
++ YN ++ L +E+A +FE + R++ DI +I+A C+ G +
Sbjct: 424 PDIMTYN----ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
Query: 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416
L L+G +PNV T+ M +G+ + E+
Sbjct: 480 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEE 514
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 15/270 (5%)
Query: 162 YACAKSA-EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC 220
Y C +S A I+ +M G + NS++N + + +L+ +M E G
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178
Query: 221 DKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAV 280
D TF+ L+ + +V M +G D Y +G K G D AL +
Sbjct: 179 DTVTFTTLVHGLFQHNKASEAVALVERMVV-KGCQPDLVTYGAVINGLCKRGEPDLALNL 237
Query: 281 LRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVW-----KRYKQNLKVYNRGYICVI 335
L K E + Y+ +I + DD ++ K K ++ YN +I
Sbjct: 238 LNKMEKGKIEADVV-IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNP----LI 292
Query: 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395
S L + A ++ + +N+ D+ N LIDA+ + G L +AE L Y ++
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL-YDEMVKSKH 351
Query: 396 --PNVRTWYLMATGYLQNNQSEKGVEAMKK 423
P+V + + G+ + + E+G+E ++
Sbjct: 352 CFPDVVAYNTLIKGFCKYKRVEEGMEVFRE 381
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 134/312 (42%), Gaps = 11/312 (3%)
Query: 120 ADVAIR---LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEII 174
ADV I +D + K + ++ A FN + K P V Y L++ A +
Sbjct: 248 ADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL 307
Query: 175 MQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM-EEKGIDCDKYTFSILLSA-C 232
+ M ++ + + +N++++ + + G + + L EM + K D ++ L+ C
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFC 367
Query: 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK 292
EG++ M + RG+V + Y T G+ +A D A V ++ +H
Sbjct: 368 KYKRVEEGMEVFREM--SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPD 425
Query: 293 FSRAYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIF 351
Y+ ++ GN + L V++ K+++K+ Y +I +L K +E +F
Sbjct: 426 I-MTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484
Query: 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411
+ + ++ ++ +CR+GL +A+ L + + G PN T+ + L++
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 412 NQSEKGVEAMKK 423
E +K+
Sbjct: 545 GDEAASAELIKE 556
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 3/166 (1%)
Query: 65 DSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI 124
D+ + Q V +G D+ I++ AL + +M K+ + L
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR-DMKLDIVTYTT 466
Query: 125 RLDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRG 182
++ + K +E F + K P+V Y +++ + E+A+ + +M++ G
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526
Query: 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228
+ + YN+++ + G+ L+ EM G D TF ++
Sbjct: 527 PLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLV 572
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 148/357 (41%), Gaps = 14/357 (3%)
Query: 68 VPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV--AIR 125
V L+DQ G + +I L+ + S A+ + M K P V +
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG---CQPDLVTYGVV 227
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGL 183
++ + K + A + N + + P V Y +++ K + A + ++M +G+
Sbjct: 228 VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
+ Y+S+++ G + L+ +M E+ I+ D +TFS L+ A +K
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 244 IVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR--AYDFVI 301
+ M R + Y++ +G+ D+A + E ++ + F Y+ +I
Sbjct: 348 LYDEM-VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF---EFMVSKHCFPDVVTYNTLI 403
Query: 302 TQYAACGNKDDVLRVWKRYKQNLKVYNR-GYICVISSLLKFDGMESAEKIFEEWESRNLC 360
+ ++ + V++ Q V N Y +I L + + A++IF+E S +
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 361 HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKG 417
+I N L+D C+ G L KA + Q EP + T+ +M G + + E G
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 119/273 (43%), Gaps = 13/273 (4%)
Query: 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216
+LLN Y +K +A ++ QM G T+ +N++++ + + +L+ M K
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 217 GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR---GVVLDWTVYATAASGYVKAGL 273
G D T+ ++++ D + ++ ME + GV+ +Y T G K
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL----IYNTIIDGLCKYKH 271
Query: 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK---RYKQNLKVYNRG 330
D AL + ++ E + Y +I+ G D R+ K N V+
Sbjct: 272 MDDALNLFKEMETKGIRPNVV-TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT-- 328
Query: 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390
+ +I + +K + AEK+++E R++ I + LI+ +C L +A+ +
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388
Query: 391 LRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+ P+V T+ + G+ + + E+G+E ++
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 167/405 (41%), Gaps = 29/405 (7%)
Query: 70 LLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR--LD 127
L+D+ V +G D+ +++ L KR L ++ + K L P + +D
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNG--LCKRGDTDLAFNL-LNKMEQGKLEPGVLIYNTIID 264
Query: 128 LIAKVQGIEQAASYFNCVPEKLKLPSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185
+ K + ++ A + F + K P+V Y +L++ A ++ M +R +
Sbjct: 265 GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINP 324
Query: 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIV 245
++++++ + + G + + L EM ++ ID T+S L++ + +D+
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH---DRLDEAK 381
Query: 246 AMME--ADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK-SEVLMMHNKFSRAYDFVIT 302
M E + D Y T G+ K ++ + V R+ S+ ++ N + Y+ +I
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT--YNILIQ 439
Query: 303 QYAACGNKDDVLRVWKR-----YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357
G+ D ++K N+ YN ++ L K +E A +FE +
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT----LLDGLCKNGKLEKAMVVFEYLQRS 495
Query: 358 NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKG 417
+ I N +I+ C+ G + L L+G +P+V + M +G+ + E+
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 418 VEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIK 462
K+ + E GT P+ C + ++ D E + IK
Sbjct: 556 DALFKE---MKEDGTL--PNSGCYNTLIRARLRDGDREASAELIK 595
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 111/277 (40%), Gaps = 44/277 (15%)
Query: 152 PSV--YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209
PS+ Y +L+N + ++A+ + + M + + YN+++ + + YK+++
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCK---YKRVEEG 415
Query: 210 MH---EMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAAS 266
M EM ++G+ + T++IL+ A D + +I M +D GV + Y T
Sbjct: 416 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLD 474
Query: 267 GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKV 326
G K G +KA+ V +R K +
Sbjct: 475 GLCKNGKLEKAMVVFE---------------------------------YLQRSKMEPTI 501
Query: 327 YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLI 386
Y Y +I + K +E +F + + D+ N +I +CR+G +A+ L
Sbjct: 502 YT--YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 387 YKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423
+ + GT PN + + L++ E E +K+
Sbjct: 560 KEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 111/275 (40%), Gaps = 49/275 (17%)
Query: 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA-CAAASDGEGIDKIVA 246
I+++ +++ + + + SL +M+ GI + YT+SIL++ C + + +
Sbjct: 82 IEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGK 141
Query: 247 MMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV----------------LMMH 290
MM+ G + ++ +GY + +A+A++ + V L +H
Sbjct: 142 MMKL--GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH 199
Query: 291 NKFSRA------------------YDFVITQYAACGNKDDVLRVWKRYKQ-----NLKVY 327
NK S A Y V+ G+ D + + +Q + +Y
Sbjct: 200 NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY 259
Query: 328 NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387
N +I L K+ M+ A +F+E E++ + ++ + LI C G A L+
Sbjct: 260 NT----IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 388 KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMK 422
R P+V T+ + +++ K VEA K
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEG---KLVEAEK 347
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393
++S++ K + + + E+ ++ + H+ + LI+ +CRR L A ++ K G
Sbjct: 87 LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146
Query: 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS 437
EPN+ T + GY + + + V + + V T ++P+
Sbjct: 147 YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV-----TGYQPN 185
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRDRGL 183
LD + K +E+A F + P++Y ++ A E + + +G+
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDK 243
+ YN+M++ + + G+ ++ D+L EM+E G + ++ L+ A D E +
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592
Query: 244 IVAMMEA 250
++ M +
Sbjct: 593 LIKEMRS 599
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 7/256 (2%)
Query: 170 KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229
KA ++++M D GL + YN +++ + G+ L+ M I+ D TF+ ++
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAII 483
Query: 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLR---KSEV 286
+A + + +M +G+ LD T G K G + AL +L K +
Sbjct: 484 NAFCKQGKADVASAFLGLM-LRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRI 542
Query: 287 LMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMES 346
L + + D + C K+++ + K K L Y ++ L++ +
Sbjct: 543 LTTPHSLNVILDML---SKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599
Query: 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406
+ +I E + ++ +I+ C+ G + +AE L+ Q G PN T+ +M
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Query: 407 GYLQNNQSEKGVEAMK 422
GY+ N + ++ +E ++
Sbjct: 660 GYVNNGKLDRALETVR 675
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 132/351 (37%), Gaps = 30/351 (8%)
Query: 102 ALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYF---------NCVPEKLKLP 152
++ MW+ K S++ P L LI G+ + A C E LKL
Sbjct: 86 CVRFFMWVCKHSSYCFDPTQKNQLLKLIVS-SGLYRVAHAVIVALIKECSRCEKEMLKLM 144
Query: 153 ----------------SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNV 196
Y +LL + A A + ++M G V IDY +++N
Sbjct: 145 YCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNA 204
Query: 197 YYQTGNYKKLDSLMHEMEEKGIDCDKYT-FSILLSACAAASDGEGIDKIVAMMEADRGVV 255
+ G + + M ++ + G D + S+LL C + + + K+ +M +
Sbjct: 205 LCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDAL-KVFDVMSKEVTCA 263
Query: 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR 315
+ Y+ G + G ++A L+ +R Y +I G D
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFG-LKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFN 322
Query: 316 VW-KRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC 374
++ + + K Y +I L + +E A + + + + N LI+ YC
Sbjct: 323 LFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYC 382
Query: 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425
+ G + A L+ + R +PNVRT+ + G + + K V +K+ L
Sbjct: 383 KDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRML 433
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 49/287 (17%)
Query: 187 TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVA 246
++ Y+ +++ + G ++ L +M EKG T+++L+ A D IDK
Sbjct: 266 SVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKA---LCDRGLIDKAFN 322
Query: 247 MMEA--DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304
+ + RG + Y G + G ++A V RK M+ + R + VIT
Sbjct: 323 LFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRK----MVKD---RIFPSVIT-- 373
Query: 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIR 364
Y +I+ K + A ++ E R ++R
Sbjct: 374 --------------------------YNALINGYCKDGRVVPAFELLTVMEKRACKPNVR 407
Query: 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKA 424
N L++ CR G +KA L+ + G P++ ++ ++ G + M A
Sbjct: 408 TFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGH-------MNTA 460
Query: 425 LVLLEAGTRWKPSKECL--AACLGYYKKERDIEGADYFIKLLTGKEI 469
LL + + +CL A + + K+ + A F+ L+ K I
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGI 507
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 151 LPSVY--IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208
LP+VY ++N E+AE ++ M+D G+ + Y M+ Y G +
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 209 LMHEMEEKGIDCDKYTFSILLSACAAASDG 238
+ M E+G + + +S LL + G
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQGFVLSQKG 702
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 129/279 (46%), Gaps = 17/279 (6%)
Query: 131 KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDY 190
+V ++ A S N + EK + S L+N Y + E+AE + QM VK I +
Sbjct: 202 RVLDMDSANSLANQMSEKNEATSN--CLINGYMGLGNLEQAESLFNQMP----VKDIISW 255
Query: 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250
+M+ Y Q Y++ ++ ++M E+GI D+ T S ++SACA E I K V M
Sbjct: 256 TTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLE-IGKEVHMYTL 314
Query: 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310
G VLD + + Y K G ++AL V L N F ++ +I AA G
Sbjct: 315 QNGFVLDVYIGSALVDMYSKCGSLERALLVFFN---LPKKNLF--CWNSIIEGLAAHGFA 369
Query: 311 DDVLRVWKRYK-QNLKVYNRGYICVISSLLKFDGMESAEKIFEEW-ESRNLCHDIRIPNH 368
+ L+++ + + +++K ++ V ++ ++ +I+ + ++ ++
Sbjct: 370 QEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGG 429
Query: 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATG 407
++ + + GL+++A LI + EPN W + G
Sbjct: 430 MVHLFSKAGLIYEALELIGNMEF---EPNAVIWGALLDG 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,232,668
Number of Sequences: 539616
Number of extensions: 6992428
Number of successful extensions: 23029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 19756
Number of HSP's gapped (non-prelim): 1951
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)