Query 011472
Match_columns 485
No_of_seqs 612 out of 2911
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 01:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-65 3.6E-70 515.5 48.7 458 9-484 373-860 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.5E-63 1.2E-67 497.3 50.9 421 47-479 370-796 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-61 3.1E-66 495.9 46.1 441 15-485 130-639 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.2E-60 4.8E-65 487.2 45.8 439 13-483 229-669 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.3E-59 2.7E-64 470.6 42.7 414 49-485 125-542 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.9E-58 4.1E-63 462.1 47.7 417 49-485 89-508 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-28 7E-33 255.2 49.4 440 18-483 375-816 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7E-28 1.5E-32 252.7 50.0 444 16-485 407-885 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 2.7E-23 5.9E-28 187.4 30.9 380 80-479 113-497 (966)
10 PRK11788 tetratricopeptide rep 99.9 9.5E-23 2.1E-27 192.2 32.8 294 126-427 42-347 (389)
11 PRK11447 cellulose synthase su 99.9 1.8E-20 3.9E-25 197.7 49.7 434 14-469 120-702 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-20 3E-25 186.6 46.1 370 85-469 129-573 (615)
13 PRK11447 cellulose synthase su 99.9 1.2E-20 2.7E-25 199.0 48.1 458 12-485 68-685 (1157)
14 PRK11788 tetratricopeptide rep 99.9 9.2E-22 2E-26 185.4 34.0 296 161-468 44-348 (389)
15 PRK15174 Vi polysaccharide exp 99.9 3.6E-20 7.9E-25 183.0 44.7 330 86-426 45-380 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 1.2E-21 2.7E-26 176.9 30.1 384 82-485 81-470 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 9.7E-20 2.1E-24 180.6 42.9 355 124-485 132-556 (615)
18 PRK15174 Vi polysaccharide exp 99.9 5.6E-20 1.2E-24 181.7 40.2 371 94-481 16-397 (656)
19 PRK10049 pgaA outer membrane p 99.9 5.4E-19 1.2E-23 178.5 43.7 409 50-476 18-465 (765)
20 PRK10049 pgaA outer membrane p 99.9 2.8E-18 6.1E-23 173.3 42.0 393 77-484 9-440 (765)
21 PRK14574 hmsH outer membrane p 99.9 2.3E-17 5E-22 163.7 44.0 441 12-474 40-520 (822)
22 KOG4422 Uncharacterized conser 99.8 8E-17 1.7E-21 139.9 34.6 341 51-410 120-480 (625)
23 PRK09782 bacteriophage N4 rece 99.8 4.5E-16 9.9E-21 157.7 44.9 213 259-485 478-691 (987)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.7E-20 151.5 46.0 413 56-484 43-497 (822)
25 PRK09782 bacteriophage N4 rece 99.8 4.3E-15 9.3E-20 150.7 45.0 373 80-474 178-713 (987)
26 KOG2003 TPR repeat-containing 99.8 1E-16 2.2E-21 140.3 26.9 385 81-479 199-701 (840)
27 KOG2002 TPR-containing nuclear 99.8 3E-15 6.6E-20 142.9 34.7 199 273-479 545-758 (1018)
28 KOG2002 TPR-containing nuclear 99.8 6.6E-15 1.4E-19 140.6 35.3 429 42-485 265-730 (1018)
29 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.6E-19 126.5 32.6 429 12-473 121-596 (625)
30 KOG0495 HAT repeat protein [RN 99.7 5.8E-13 1.3E-17 122.2 41.6 392 75-485 471-865 (913)
31 PRK10747 putative protoheme IX 99.7 5.1E-14 1.1E-18 131.6 34.5 283 132-426 97-389 (398)
32 PF13429 TPR_15: Tetratricopep 99.7 7.1E-17 1.5E-21 144.2 13.4 261 159-426 15-276 (280)
33 KOG1915 Cell cycle control pro 99.7 1.3E-13 2.7E-18 121.8 32.6 397 10-426 111-535 (677)
34 PF13429 TPR_15: Tetratricopep 99.7 6.5E-17 1.4E-21 144.5 12.6 258 126-390 15-275 (280)
35 KOG2003 TPR repeat-containing 99.7 9.3E-14 2E-18 122.0 31.1 369 71-453 224-709 (840)
36 TIGR00540 hemY_coli hemY prote 99.7 1.3E-13 2.8E-18 129.6 34.4 292 129-426 94-398 (409)
37 PRK10747 putative protoheme IX 99.7 7.3E-14 1.6E-18 130.6 31.8 285 165-466 97-389 (398)
38 KOG2076 RNA polymerase III tra 99.7 5.8E-13 1.3E-17 126.7 37.3 378 83-466 139-554 (895)
39 TIGR00540 hemY_coli hemY prote 99.7 5.9E-14 1.3E-18 131.9 30.9 291 94-391 95-398 (409)
40 KOG1155 Anaphase-promoting com 99.7 1.4E-12 3.1E-17 115.0 35.4 300 159-468 234-537 (559)
41 KOG2076 RNA polymerase III tra 99.7 1E-12 2.2E-17 125.1 35.8 342 117-468 135-513 (895)
42 KOG1126 DNA-binding cell divis 99.7 3.8E-14 8.3E-19 130.5 24.3 282 98-393 334-621 (638)
43 COG2956 Predicted N-acetylgluc 99.7 3.3E-13 7.1E-18 113.6 26.6 288 165-467 48-347 (389)
44 KOG0547 Translocase of outer m 99.6 5.9E-12 1.3E-16 111.9 34.7 364 85-466 117-565 (606)
45 KOG1155 Anaphase-promoting com 99.6 1.2E-12 2.5E-17 115.5 29.1 307 126-450 234-552 (559)
46 KOG1126 DNA-binding cell divis 99.6 1.4E-13 3.1E-18 126.8 23.7 283 67-362 338-625 (638)
47 KOG0495 HAT repeat protein [RN 99.6 2.4E-11 5.2E-16 111.8 37.7 367 83-470 516-883 (913)
48 COG3071 HemY Uncharacterized e 99.6 7.4E-12 1.6E-16 108.8 30.5 286 165-465 97-388 (400)
49 COG3071 HemY Uncharacterized e 99.6 1.6E-11 3.6E-16 106.7 32.2 284 132-426 97-389 (400)
50 KOG1915 Cell cycle control pro 99.6 1.4E-09 3E-14 96.8 40.3 389 67-469 92-538 (677)
51 KOG0547 Translocase of outer m 99.6 3.9E-11 8.5E-16 106.8 30.4 352 126-483 122-549 (606)
52 KOG1173 Anaphase-promoting com 99.6 2.5E-10 5.4E-15 103.7 36.0 386 78-478 44-529 (611)
53 COG2956 Predicted N-acetylgluc 99.5 2.8E-11 6.1E-16 102.2 27.3 269 199-479 47-322 (389)
54 PRK12370 invasion protein regu 99.5 4.5E-11 9.7E-16 116.9 29.8 250 133-392 275-535 (553)
55 TIGR02521 type_IV_pilW type IV 99.5 2.7E-11 5.9E-16 105.5 25.0 202 257-467 30-232 (234)
56 TIGR02521 type_IV_pilW type IV 99.5 3.6E-11 7.7E-16 104.7 24.7 198 153-354 32-229 (234)
57 KOG2047 mRNA splicing factor [ 99.5 3.1E-09 6.7E-14 98.1 37.3 439 4-467 102-615 (835)
58 KOG1129 TPR repeat-containing 99.5 8.2E-12 1.8E-16 105.4 19.2 232 226-469 227-460 (478)
59 PRK12370 invasion protein regu 99.5 3.2E-11 6.9E-16 117.9 26.4 266 150-427 254-535 (553)
60 KOG2376 Signal recognition par 99.5 4.3E-09 9.4E-14 96.3 37.6 414 51-484 13-505 (652)
61 PF12569 NARP1: NMDA receptor- 99.5 5E-10 1.1E-14 105.9 32.6 295 88-391 9-333 (517)
62 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.5E-16 104.6 17.7 227 126-356 230-457 (478)
63 PF12569 NARP1: NMDA receptor- 99.4 7.5E-10 1.6E-14 104.7 30.9 287 57-355 14-332 (517)
64 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.9E-14 99.1 30.5 283 153-449 245-533 (611)
65 KOG4318 Bicoid mRNA stability 99.4 2.8E-11 6E-16 115.1 19.1 272 69-376 11-284 (1088)
66 PF13041 PPR_2: PPR repeat fam 99.4 9.6E-13 2.1E-17 82.6 5.5 49 185-233 1-49 (50)
67 KOG1174 Anaphase-promoting com 99.4 1.7E-08 3.7E-13 88.5 33.1 279 183-477 228-510 (564)
68 KOG1156 N-terminal acetyltrans 99.4 2.8E-08 6.1E-13 92.1 35.9 363 95-473 19-440 (700)
69 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.3E-17 81.1 6.2 50 361-410 1-50 (50)
70 KOG1840 Kinesin light chain [C 99.4 1.5E-09 3.3E-14 101.4 27.3 241 225-465 202-477 (508)
71 KOG4318 Bicoid mRNA stability 99.4 7.3E-11 1.6E-15 112.3 18.6 243 150-413 23-286 (1088)
72 KOG2047 mRNA splicing factor [ 99.3 5.9E-08 1.3E-12 89.9 36.4 401 50-469 105-581 (835)
73 PRK11189 lipoprotein NlpI; Pro 99.3 3.2E-09 6.9E-14 95.1 26.1 230 199-444 38-276 (296)
74 KOG1156 N-terminal acetyltrans 99.3 2.2E-07 4.8E-12 86.4 36.5 376 78-469 36-470 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.3 4E-09 8.6E-14 94.5 25.0 221 97-328 40-270 (296)
76 KOG1174 Anaphase-promoting com 99.3 1.7E-08 3.8E-13 88.4 27.4 276 141-426 220-499 (564)
77 COG3063 PilF Tfp pilus assembl 99.3 1.2E-08 2.5E-13 82.7 24.4 204 260-473 37-242 (250)
78 KOG1840 Kinesin light chain [C 99.3 3.3E-09 7.2E-14 99.2 24.6 248 78-355 194-477 (508)
79 cd05804 StaR_like StaR_like; a 99.3 5.7E-08 1.2E-12 90.5 33.1 310 153-468 7-337 (355)
80 COG3063 PilF Tfp pilus assembl 99.3 1.1E-08 2.3E-13 82.9 23.5 198 155-356 38-235 (250)
81 KOG4162 Predicted calmodulin-b 99.2 4.2E-07 9.1E-12 86.3 36.9 381 72-468 312-784 (799)
82 KOG3785 Uncharacterized conser 99.2 9.6E-07 2.1E-11 76.3 35.2 352 89-469 63-492 (557)
83 KOG3785 Uncharacterized conser 99.2 1.9E-07 4.1E-12 80.5 30.7 195 90-301 29-226 (557)
84 KOG0624 dsRNA-activated protei 99.2 3.6E-07 7.9E-12 78.5 31.2 314 81-426 36-369 (504)
85 cd05804 StaR_like StaR_like; a 99.2 2.6E-07 5.7E-12 86.0 32.8 200 83-287 6-215 (355)
86 KOG4162 Predicted calmodulin-b 99.2 5.3E-07 1.1E-11 85.6 32.6 373 50-427 326-783 (799)
87 KOG0548 Molecular co-chaperone 99.1 6.7E-07 1.5E-11 81.5 30.5 392 56-476 11-464 (539)
88 KOG1914 mRNA cleavage and poly 99.1 6.9E-06 1.5E-10 75.1 36.6 411 43-469 16-503 (656)
89 PRK04841 transcriptional regul 99.1 1.2E-06 2.5E-11 92.4 36.3 341 127-468 382-761 (903)
90 KOG4340 Uncharacterized conser 99.1 3.9E-07 8.5E-12 76.7 24.9 393 48-466 11-442 (459)
91 KOG2376 Signal recognition par 99.0 1.8E-05 3.8E-10 73.4 35.2 344 92-464 88-517 (652)
92 KOG1125 TPR repeat-containing 99.0 6E-08 1.3E-12 88.9 19.5 249 197-455 295-559 (579)
93 PF04733 Coatomer_E: Coatomer 99.0 2.5E-08 5.5E-13 88.0 16.4 127 260-391 133-264 (290)
94 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.5E-12 87.1 20.1 222 129-355 295-525 (579)
95 PF04733 Coatomer_E: Coatomer 99.0 3.7E-08 8E-13 87.0 16.2 221 52-287 40-265 (290)
96 KOG1070 rRNA processing protei 98.9 7.2E-07 1.6E-11 89.9 25.7 225 187-418 1458-1691(1710)
97 PLN02789 farnesyltranstransfer 98.9 2.6E-06 5.7E-11 76.4 26.4 157 313-477 127-312 (320)
98 PLN02789 farnesyltranstransfer 98.9 1.7E-06 3.7E-11 77.5 25.2 200 134-339 52-266 (320)
99 PRK04841 transcriptional regul 98.9 9E-06 2E-10 85.8 33.4 302 160-467 382-720 (903)
100 KOG1070 rRNA processing protei 98.8 2.5E-06 5.4E-11 86.2 25.6 250 204-465 1442-1698(1710)
101 KOG0985 Vesicle coat protein c 98.8 3.2E-05 6.9E-10 76.1 31.9 352 70-467 969-1370(1666)
102 TIGR03302 OM_YfiO outer membra 98.8 1.4E-06 3.1E-11 75.7 21.6 63 403-468 171-233 (235)
103 KOG0548 Molecular co-chaperone 98.8 7.7E-05 1.7E-09 68.5 32.0 236 190-450 227-471 (539)
104 KOG1128 Uncharacterized conser 98.8 1.1E-06 2.3E-11 83.1 19.5 214 192-427 403-616 (777)
105 KOG1128 Uncharacterized conser 98.8 3.9E-06 8.5E-11 79.4 22.6 215 155-391 401-615 (777)
106 KOG0624 dsRNA-activated protei 98.8 0.0001 2.2E-09 63.9 29.8 297 51-357 42-370 (504)
107 TIGR03302 OM_YfiO outer membra 98.8 2.4E-06 5.2E-11 74.3 20.1 58 264-321 172-230 (235)
108 KOG4340 Uncharacterized conser 98.7 4.6E-05 9.9E-10 64.6 26.0 337 78-426 5-374 (459)
109 PF12854 PPR_1: PPR repeat 98.7 1.1E-08 2.4E-13 57.4 3.4 32 182-213 2-33 (34)
110 PRK14720 transcript cleavage f 98.7 2.1E-06 4.5E-11 85.8 21.4 132 217-355 25-176 (906)
111 PRK10370 formate-dependent nit 98.7 2.4E-06 5.2E-11 71.3 18.8 118 307-426 52-172 (198)
112 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.4E-13 56.3 3.9 30 394-423 3-32 (34)
113 PRK15179 Vi polysaccharide bio 98.7 6.8E-06 1.5E-10 81.4 23.7 133 256-391 84-216 (694)
114 KOG3616 Selective LIM binding 98.7 1.6E-05 3.6E-10 75.4 24.6 193 228-460 738-930 (1636)
115 KOG0985 Vesicle coat protein c 98.7 0.00035 7.7E-09 69.1 33.8 287 85-419 938-1241(1666)
116 PRK10370 formate-dependent nit 98.7 6.3E-06 1.4E-10 68.8 19.1 126 200-330 52-180 (198)
117 KOG3617 WD40 and TPR repeat-co 98.7 0.00011 2.5E-09 70.8 29.0 339 82-463 756-1170(1416)
118 COG5010 TadD Flp pilus assembl 98.7 6.8E-06 1.5E-10 68.5 18.6 157 298-462 70-226 (257)
119 PRK15179 Vi polysaccharide bio 98.7 9E-06 1.9E-10 80.5 22.9 209 229-467 35-245 (694)
120 KOG1127 TPR repeat-containing 98.7 5.5E-05 1.2E-09 74.4 27.3 360 99-473 474-885 (1238)
121 PRK14720 transcript cleavage f 98.6 2.6E-05 5.6E-10 78.2 25.8 216 80-305 28-268 (906)
122 PRK15359 type III secretion sy 98.6 2.5E-06 5.3E-11 67.3 15.0 119 349-478 14-132 (144)
123 COG5010 TadD Flp pilus assembl 98.6 1.6E-05 3.6E-10 66.2 19.9 154 264-421 72-225 (257)
124 KOG3616 Selective LIM binding 98.6 6.2E-05 1.3E-09 71.6 25.7 137 302-464 740-876 (1636)
125 KOG3081 Vesicle coat complex C 98.6 1.8E-05 3.9E-10 66.0 19.5 261 185-469 8-273 (299)
126 KOG1914 mRNA cleavage and poly 98.6 0.0005 1.1E-08 63.4 31.5 354 116-481 17-481 (656)
127 KOG3617 WD40 and TPR repeat-co 98.6 7.4E-05 1.6E-09 72.0 25.0 241 117-389 724-993 (1416)
128 KOG3081 Vesicle coat complex C 98.6 3.8E-05 8.2E-10 64.1 20.4 140 160-312 116-259 (299)
129 KOG3060 Uncharacterized conser 98.6 4.2E-05 9.1E-10 63.4 20.4 182 62-249 27-218 (289)
130 KOG1127 TPR repeat-containing 98.5 0.00013 2.7E-09 72.0 26.4 160 84-249 493-657 (1238)
131 COG4783 Putative Zn-dependent 98.5 6.8E-05 1.5E-09 68.2 23.0 146 196-366 315-462 (484)
132 PRK15359 type III secretion sy 98.5 9.6E-06 2.1E-10 64.0 15.3 84 231-318 33-116 (144)
133 COG4783 Putative Zn-dependent 98.5 6.1E-05 1.3E-09 68.5 21.9 115 305-421 317-431 (484)
134 KOG3060 Uncharacterized conser 98.4 0.00021 4.5E-09 59.4 21.2 188 234-426 24-219 (289)
135 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.5E-10 63.1 13.0 98 366-470 20-117 (135)
136 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.8E-10 62.9 12.9 20 265-284 24-43 (135)
137 KOG2053 Mitochondrial inherita 98.3 0.0042 9E-08 61.1 39.2 106 97-206 23-129 (932)
138 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.8E-11 49.3 4.5 33 189-221 2-34 (35)
139 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.4E-11 49.1 4.3 35 153-187 1-35 (35)
140 PF13812 PPR_3: Pentatricopept 98.2 2.7E-06 5.9E-11 48.1 4.3 32 189-220 3-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.6E-05 1.6E-09 68.5 15.7 123 331-465 172-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.2 6.5E-05 1.4E-09 59.5 13.4 83 127-211 56-142 (145)
143 PF13812 PPR_3: Pentatricopept 98.2 3.5E-06 7.6E-11 47.7 4.3 33 153-185 2-34 (34)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.8E-05 1.9E-09 68.1 15.5 124 155-285 172-295 (395)
145 PF10037 MRP-S27: Mitochondria 98.2 5.1E-05 1.1E-09 69.9 13.6 125 322-451 60-186 (429)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.6E-09 57.2 14.9 124 155-283 15-143 (145)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00013 2.7E-09 55.7 13.5 107 365-476 4-114 (119)
148 PF08579 RPM2: Mitochondrial r 98.1 4.6E-05 1E-09 54.8 8.9 79 156-234 29-116 (120)
149 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00016 3.6E-09 55.0 13.1 97 85-181 4-105 (119)
150 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.5E-09 52.2 11.2 96 366-468 3-98 (100)
151 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.5E-09 64.1 12.7 132 330-469 3-138 (280)
152 PF14938 SNAP: Soluble NSF att 97.9 0.0023 5.1E-08 57.1 19.6 137 332-472 118-268 (282)
153 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.7E-09 52.1 10.5 18 267-284 9-26 (100)
154 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3.1E-09 67.0 11.7 119 117-235 64-186 (429)
155 PF06239 ECSIT: Evolutionarily 97.9 0.00011 2.3E-09 60.0 9.0 98 139-236 34-152 (228)
156 KOG2041 WD40 repeat protein [G 97.9 0.018 4E-07 55.2 24.5 349 80-468 689-1087(1189)
157 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.7E-10 43.2 3.4 29 154-182 2-30 (31)
158 COG3898 Uncharacterized membra 97.8 0.019 4.2E-07 51.2 29.4 78 96-179 133-215 (531)
159 PF12895 Apc3: Anaphase-promot 97.8 8.4E-05 1.8E-09 52.5 7.1 80 376-463 2-83 (84)
160 PRK10866 outer membrane biogen 97.8 0.0046 1E-07 53.5 18.9 175 125-319 38-237 (243)
161 PRK15363 pathogenicity island 97.8 0.0011 2.4E-08 51.6 13.3 94 331-426 38-131 (157)
162 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 7E-10 42.5 3.7 29 365-393 2-30 (31)
163 PF12895 Apc3: Anaphase-promot 97.8 6.4E-05 1.4E-09 53.1 6.1 79 236-318 3-82 (84)
164 PLN03088 SGT1, suppressor of 97.8 0.00084 1.8E-08 61.9 15.0 102 334-445 8-110 (356)
165 PRK15363 pathogenicity island 97.8 0.00091 2E-08 52.1 12.5 91 264-356 41-131 (157)
166 PLN03088 SGT1, suppressor of 97.8 0.00083 1.8E-08 62.0 14.2 86 129-215 12-98 (356)
167 PF08579 RPM2: Mitochondrial r 97.8 0.00063 1.4E-08 49.1 10.2 77 369-450 31-116 (120)
168 PRK02603 photosystem I assembl 97.8 0.0015 3.4E-08 53.4 14.4 83 225-310 38-122 (172)
169 PF05843 Suf: Suppressor of fo 97.7 0.00092 2E-08 59.4 13.5 129 224-356 3-135 (280)
170 PRK02603 photosystem I assembl 97.7 0.0029 6.3E-08 51.8 15.2 27 154-180 74-100 (172)
171 CHL00033 ycf3 photosystem I as 97.7 0.00091 2E-08 54.5 12.1 60 156-215 39-100 (168)
172 KOG0550 Molecular chaperone (D 97.7 0.011 2.4E-07 53.1 19.0 53 231-287 178-232 (486)
173 KOG0553 TPR repeat-containing 97.7 0.00089 1.9E-08 57.4 11.9 100 301-403 88-187 (304)
174 PRK10153 DNA-binding transcrip 97.7 0.0025 5.3E-08 61.6 16.4 66 398-470 420-485 (517)
175 KOG0553 TPR repeat-containing 97.7 0.00069 1.5E-08 58.0 11.0 103 335-447 88-191 (304)
176 PRK10866 outer membrane biogen 97.7 0.031 6.8E-07 48.4 22.9 61 403-466 180-240 (243)
177 PF14938 SNAP: Soluble NSF att 97.7 0.018 3.9E-07 51.4 20.8 119 273-391 89-224 (282)
178 PF07079 DUF1347: Protein of u 97.6 0.048 1E-06 49.9 33.5 447 1-466 1-523 (549)
179 PF14559 TPR_19: Tetratricopep 97.6 0.00038 8.2E-09 46.8 7.5 61 94-156 2-62 (68)
180 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.8E-08 53.6 12.1 27 260-286 74-100 (168)
181 KOG2041 WD40 repeat protein [G 97.6 0.072 1.6E-06 51.4 24.5 295 97-426 748-1085(1189)
182 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.053 1.2E-06 49.5 34.1 374 78-469 37-533 (660)
183 PRK10153 DNA-binding transcrip 97.6 0.0023 5.1E-08 61.7 14.9 71 362-441 419-489 (517)
184 COG3898 Uncharacterized membra 97.6 0.051 1.1E-06 48.7 29.6 294 154-467 84-392 (531)
185 PF13432 TPR_16: Tetratricopep 97.6 0.00026 5.7E-09 47.0 6.0 61 405-471 4-64 (65)
186 COG4235 Cytochrome c biogenesi 97.6 0.0037 8.1E-08 54.0 14.2 114 290-406 152-268 (287)
187 PF04840 Vps16_C: Vps16, C-ter 97.6 0.056 1.2E-06 48.7 26.1 82 298-388 181-262 (319)
188 PF12688 TPR_5: Tetratrico pep 97.5 0.0051 1.1E-07 46.2 13.0 56 371-426 9-66 (120)
189 PF13525 YfiO: Outer membrane 97.5 0.013 2.7E-07 49.5 16.9 50 264-313 147-197 (203)
190 KOG1130 Predicted G-alpha GTPa 97.5 0.0014 3E-08 58.6 11.2 286 126-427 24-344 (639)
191 PF14559 TPR_19: Tetratricopep 97.5 0.00027 5.8E-09 47.5 5.4 60 409-474 2-61 (68)
192 PF07079 DUF1347: Protein of u 97.5 0.088 1.9E-06 48.2 34.9 381 86-481 49-505 (549)
193 KOG2796 Uncharacterized conser 97.4 0.035 7.5E-07 46.9 17.7 130 156-287 181-315 (366)
194 PF13414 TPR_11: TPR repeat; P 97.4 0.00043 9.3E-09 46.6 5.8 66 397-469 2-69 (69)
195 KOG1130 Predicted G-alpha GTPa 97.4 0.0013 2.8E-08 58.7 9.8 138 329-466 196-343 (639)
196 PF06239 ECSIT: Evolutionarily 97.4 0.0031 6.7E-08 51.7 11.1 106 79-202 43-153 (228)
197 PF12688 TPR_5: Tetratrico pep 97.4 0.016 3.5E-07 43.6 14.1 92 193-285 7-102 (120)
198 PF13432 TPR_16: Tetratricopep 97.4 0.00089 1.9E-08 44.4 6.7 53 128-180 6-59 (65)
199 COG4235 Cytochrome c biogenesi 97.3 0.016 3.5E-07 50.2 15.0 102 362-470 155-259 (287)
200 KOG2053 Mitochondrial inherita 97.3 0.21 4.6E-06 49.8 39.4 192 94-288 54-256 (932)
201 PRK10803 tol-pal system protei 97.3 0.0088 1.9E-07 52.2 13.5 102 366-472 146-251 (263)
202 PF13525 YfiO: Outer membrane 97.3 0.056 1.2E-06 45.5 18.1 52 404-458 147-198 (203)
203 PF13281 DUF4071: Domain of un 97.3 0.068 1.5E-06 48.7 19.1 77 263-339 146-228 (374)
204 COG4700 Uncharacterized protei 97.3 0.067 1.4E-06 42.8 18.1 68 219-287 86-153 (251)
205 PF03704 BTAD: Bacterial trans 97.2 0.013 2.7E-07 46.5 13.0 71 153-224 63-138 (146)
206 PRK10803 tol-pal system protei 97.2 0.0081 1.8E-07 52.4 12.7 96 86-181 146-246 (263)
207 KOG0550 Molecular chaperone (D 97.2 0.15 3.3E-06 46.2 22.7 263 87-357 53-350 (486)
208 COG4700 Uncharacterized protei 97.2 0.074 1.6E-06 42.5 18.3 132 150-286 87-221 (251)
209 PF13414 TPR_11: TPR repeat; P 97.2 0.0025 5.5E-08 42.8 7.4 59 258-318 3-62 (69)
210 PF13424 TPR_12: Tetratricopep 97.1 0.0017 3.6E-08 45.0 6.1 68 398-465 5-73 (78)
211 PF13371 TPR_9: Tetratricopept 97.0 0.0049 1.1E-07 42.0 7.4 62 406-473 3-64 (73)
212 PRK15331 chaperone protein Sic 97.0 0.043 9.3E-07 43.3 13.0 85 130-215 48-133 (165)
213 PF13371 TPR_9: Tetratricopept 96.9 0.0071 1.5E-07 41.1 7.6 58 92-151 4-61 (73)
214 PF12921 ATP13: Mitochondrial 96.9 0.017 3.7E-07 43.9 10.0 84 362-449 1-99 (126)
215 KOG2796 Uncharacterized conser 96.9 0.23 5E-06 42.2 22.2 132 190-324 180-316 (366)
216 PF03704 BTAD: Bacterial trans 96.8 0.0066 1.4E-07 48.1 7.7 75 366-441 65-139 (146)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.34 7.3E-06 44.5 18.7 127 263-391 402-530 (660)
218 COG3118 Thioredoxin domain-con 96.8 0.26 5.6E-06 42.8 17.1 121 90-215 141-264 (304)
219 PRK15331 chaperone protein Sic 96.7 0.033 7.1E-07 43.9 10.5 87 268-356 47-133 (165)
220 PF13424 TPR_12: Tetratricopep 96.7 0.0087 1.9E-07 41.3 6.6 59 260-318 7-70 (78)
221 COG4649 Uncharacterized protei 96.7 0.17 3.8E-06 40.0 13.9 143 72-216 48-196 (221)
222 PF13281 DUF4071: Domain of un 96.6 0.53 1.2E-05 43.1 20.7 169 117-287 139-334 (374)
223 PF12921 ATP13: Mitochondrial 96.5 0.024 5.3E-07 43.1 8.7 50 218-267 48-97 (126)
224 PF08631 SPO22: Meiosis protei 96.5 0.59 1.3E-05 41.6 24.7 166 295-465 85-273 (278)
225 PF04840 Vps16_C: Vps16, C-ter 96.4 0.7 1.5E-05 41.8 29.3 107 329-460 178-284 (319)
226 KOG3941 Intermediate in Toll s 96.4 0.022 4.8E-07 48.5 8.3 98 140-237 55-173 (406)
227 KOG1538 Uncharacterized conser 96.3 0.2 4.4E-06 48.1 14.8 188 83-286 598-801 (1081)
228 COG4105 ComL DNA uptake lipopr 96.3 0.59 1.3E-05 39.9 18.9 57 264-322 173-232 (254)
229 COG1729 Uncharacterized protei 96.3 0.1 2.2E-06 44.8 11.8 104 365-473 144-250 (262)
230 KOG1538 Uncharacterized conser 96.3 0.32 6.9E-06 46.8 15.9 22 446-467 825-846 (1081)
231 KOG2280 Vacuolar assembly/sort 96.3 1.3 2.9E-05 43.6 28.6 322 115-462 428-794 (829)
232 PF10300 DUF3808: Protein of u 96.1 0.29 6.4E-06 47.1 15.6 159 157-319 193-372 (468)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.23 5E-06 46.1 13.9 35 79-113 71-105 (453)
234 PF04053 Coatomer_WDAD: Coatom 96.1 0.17 3.7E-06 47.9 13.6 46 128-177 327-372 (443)
235 COG1729 Uncharacterized protei 96.1 0.093 2E-06 45.0 10.6 96 85-181 144-244 (262)
236 PF13428 TPR_14: Tetratricopep 96.1 0.017 3.6E-07 34.6 4.6 39 440-478 3-41 (44)
237 PF10300 DUF3808: Protein of u 96.1 0.24 5.3E-06 47.7 14.8 180 99-287 173-376 (468)
238 smart00299 CLH Clathrin heavy 96.1 0.5 1.1E-05 36.9 15.1 124 332-482 11-136 (140)
239 PF08631 SPO22: Meiosis protei 96.1 0.98 2.1E-05 40.2 25.4 121 94-216 4-150 (278)
240 COG0457 NrfG FOG: TPR repeat [ 96.1 0.8 1.7E-05 39.1 27.5 187 201-391 37-230 (291)
241 COG3118 Thioredoxin domain-con 96.0 0.66 1.4E-05 40.4 15.4 153 162-318 144-296 (304)
242 PF13512 TPR_18: Tetratricopep 96.0 0.25 5.4E-06 38.1 11.6 74 126-199 17-94 (142)
243 KOG2610 Uncharacterized conser 95.9 0.74 1.6E-05 40.7 15.2 114 271-387 116-233 (491)
244 PF04053 Coatomer_WDAD: Coatom 95.9 0.28 6.1E-06 46.5 14.1 160 91-284 269-428 (443)
245 KOG0543 FKBP-type peptidyl-pro 95.9 0.14 3E-06 46.4 11.3 60 331-391 260-319 (397)
246 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.24 5.2E-06 46.0 13.0 64 118-181 74-141 (453)
247 KOG1920 IkappaB kinase complex 95.8 2.5 5.4E-05 44.2 20.4 79 264-353 971-1051(1265)
248 PF09613 HrpB1_HrpK: Bacterial 95.8 0.63 1.4E-05 36.7 13.0 72 91-164 18-89 (160)
249 KOG2280 Vacuolar assembly/sort 95.7 2.4 5.3E-05 41.9 28.7 325 76-423 425-795 (829)
250 COG0457 NrfG FOG: TPR repeat [ 95.7 1.2 2.6E-05 38.0 27.5 162 153-318 60-226 (291)
251 KOG1585 Protein required for f 95.6 0.71 1.5E-05 38.9 13.4 86 85-179 33-118 (308)
252 COG4105 ComL DNA uptake lipopr 95.6 1.2 2.7E-05 38.0 19.1 61 403-469 172-235 (254)
253 KOG1941 Acetylcholine receptor 95.6 0.39 8.5E-06 42.8 12.5 55 264-318 128-186 (518)
254 KOG0543 FKBP-type peptidyl-pro 95.5 0.26 5.7E-06 44.7 11.6 89 126-215 215-319 (397)
255 KOG1941 Acetylcholine receptor 95.5 0.94 2E-05 40.6 14.5 164 154-318 85-270 (518)
256 PF04184 ST7: ST7 protein; In 95.5 0.5 1.1E-05 44.3 13.3 76 226-301 263-338 (539)
257 KOG2114 Vacuolar assembly/sort 95.4 2.4 5.2E-05 42.5 18.3 183 117-319 332-515 (933)
258 PF04184 ST7: ST7 protein; In 95.4 1.6 3.4E-05 41.1 16.2 164 157-336 173-339 (539)
259 COG4785 NlpI Lipoprotein NlpI, 95.4 1.3 2.9E-05 36.6 17.0 181 128-319 74-262 (297)
260 PF02259 FAT: FAT domain; Int 95.3 2.3 5.1E-05 39.4 21.2 52 194-249 5-56 (352)
261 KOG2114 Vacuolar assembly/sort 95.3 3.4 7.3E-05 41.5 19.0 144 87-248 372-516 (933)
262 KOG1258 mRNA processing protei 95.3 2.9 6.3E-05 40.3 32.7 367 67-452 64-489 (577)
263 KOG4555 TPR repeat-containing 95.3 0.56 1.2E-05 35.2 10.6 92 372-468 52-145 (175)
264 COG1747 Uncharacterized N-term 95.3 2.7 5.8E-05 39.7 20.2 182 116-304 63-249 (711)
265 PRK11906 transcriptional regul 95.2 1.5 3.3E-05 41.0 15.7 109 343-462 319-431 (458)
266 smart00299 CLH Clathrin heavy 95.2 1.1 2.4E-05 35.0 15.3 86 156-249 11-96 (140)
267 KOG2063 Vacuolar assembly/sort 95.2 4.6 9.9E-05 41.6 21.5 189 295-483 505-744 (877)
268 KOG2610 Uncharacterized conser 95.1 2.3 5E-05 37.8 15.7 151 164-318 115-271 (491)
269 PF13428 TPR_14: Tetratricopep 95.1 0.065 1.4E-06 32.0 4.5 39 260-300 3-41 (44)
270 PF13170 DUF4003: Protein of u 95.0 1.3 2.7E-05 39.7 14.1 59 67-125 81-145 (297)
271 KOG3941 Intermediate in Toll s 94.9 0.14 3E-06 43.9 7.4 73 342-414 86-174 (406)
272 KOG4555 TPR repeat-containing 94.8 0.57 1.2E-05 35.2 9.5 89 268-358 53-145 (175)
273 COG3629 DnrI DNA-binding trans 94.8 0.38 8.3E-06 42.0 10.2 82 365-447 155-236 (280)
274 PRK11906 transcriptional regul 94.7 2.4 5.3E-05 39.7 15.5 149 273-425 273-434 (458)
275 PF09205 DUF1955: Domain of un 94.4 1.7 3.6E-05 32.9 13.7 58 335-393 93-150 (161)
276 TIGR02561 HrpB1_HrpK type III 94.3 1.4 3.1E-05 34.1 11.0 66 94-161 21-86 (153)
277 COG4785 NlpI Lipoprotein NlpI, 94.2 2.7 6E-05 34.9 16.4 87 232-323 75-162 (297)
278 PF13512 TPR_18: Tetratricopep 94.2 1.7 3.6E-05 33.7 11.3 83 85-167 12-97 (142)
279 PF07035 Mic1: Colon cancer-as 94.0 2.6 5.6E-05 33.8 14.9 135 67-215 13-148 (167)
280 COG3629 DnrI DNA-binding trans 93.8 0.7 1.5E-05 40.5 9.7 77 153-230 154-235 (280)
281 PF10602 RPN7: 26S proteasome 93.8 0.8 1.7E-05 37.4 9.6 97 330-426 38-141 (177)
282 PF10602 RPN7: 26S proteasome 93.8 0.78 1.7E-05 37.5 9.6 101 364-466 37-141 (177)
283 PF04097 Nic96: Nup93/Nic96; 93.7 8.5 0.00018 38.8 19.7 49 82-132 110-158 (613)
284 PF09205 DUF1955: Domain of un 93.6 2.4 5.2E-05 32.1 12.8 65 188-254 87-151 (161)
285 PF13170 DUF4003: Protein of u 93.6 5.3 0.00011 35.8 23.2 91 345-435 160-254 (297)
286 PF09613 HrpB1_HrpK: Bacterial 93.4 3.2 7E-05 32.8 12.4 50 164-215 22-72 (160)
287 KOG4570 Uncharacterized conser 93.3 1 2.2E-05 39.5 9.6 101 324-426 60-163 (418)
288 COG4649 Uncharacterized protei 93.3 3.5 7.7E-05 32.9 14.1 129 153-287 60-196 (221)
289 PF13176 TPR_7: Tetratricopept 93.2 0.22 4.8E-06 28.1 4.0 26 400-425 1-26 (36)
290 KOG1258 mRNA processing protei 92.8 10 0.00022 36.8 33.9 383 81-479 43-482 (577)
291 KOG4570 Uncharacterized conser 92.7 2.1 4.5E-05 37.7 10.6 98 293-392 63-164 (418)
292 PF07035 Mic1: Colon cancer-as 92.7 4.4 9.6E-05 32.5 15.5 134 208-356 15-148 (167)
293 PF13431 TPR_17: Tetratricopep 92.7 0.13 2.8E-06 28.6 2.4 30 143-172 3-33 (34)
294 KOG1550 Extracellular protein 92.6 8.3 0.00018 38.3 16.4 151 238-393 228-394 (552)
295 PF13176 TPR_7: Tetratricopept 92.4 0.31 6.7E-06 27.4 3.8 23 190-212 2-24 (36)
296 KOG1920 IkappaB kinase complex 92.3 17 0.00038 38.4 27.1 136 298-465 912-1053(1265)
297 COG2976 Uncharacterized protei 91.8 3.2 6.9E-05 33.9 10.1 55 160-216 134-188 (207)
298 COG2909 MalT ATP-dependent tra 91.5 18 0.0004 37.0 25.0 230 233-463 426-684 (894)
299 KOG1550 Extracellular protein 91.1 17 0.00038 36.1 21.6 273 168-469 228-540 (552)
300 PF11207 DUF2989: Protein of u 91.1 2.9 6.3E-05 34.5 9.3 82 373-458 117-198 (203)
301 KOG1585 Protein required for f 91.0 9 0.0002 32.7 16.8 21 126-146 38-58 (308)
302 KOG4234 TPR repeat-containing 91.0 4.9 0.00011 33.0 10.3 88 374-469 106-199 (271)
303 KOG2066 Vacuolar assembly/sort 91.0 19 0.00041 36.3 23.3 24 263-286 510-533 (846)
304 PF00515 TPR_1: Tetratricopept 90.9 0.89 1.9E-05 24.9 4.7 27 400-426 3-29 (34)
305 KOG0890 Protein kinase of the 90.8 36 0.00078 39.2 27.2 150 88-246 1388-1542(2382)
306 KOG4648 Uncharacterized conser 90.6 1.4 3.1E-05 39.1 7.6 90 334-425 103-192 (536)
307 PRK09687 putative lyase; Provi 90.3 13 0.00027 33.2 27.0 82 80-166 34-119 (280)
308 PF13431 TPR_17: Tetratricopep 90.3 0.36 7.7E-06 26.8 2.6 25 290-314 9-33 (34)
309 PF13929 mRNA_stabil: mRNA sta 90.3 12 0.00026 32.9 16.7 134 134-268 143-288 (292)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 4.5 9.8E-05 28.7 8.2 45 381-425 25-69 (103)
311 PF13374 TPR_10: Tetratricopep 90.1 0.95 2.1E-05 26.2 4.6 28 259-286 3-30 (42)
312 PF02284 COX5A: Cytochrome c o 90.0 2.5 5.5E-05 30.3 7.1 35 433-467 40-74 (108)
313 PRK15180 Vi polysaccharide bio 89.8 17 0.00037 34.3 13.9 87 304-391 333-419 (831)
314 PF07719 TPR_2: Tetratricopept 89.6 1.3 2.8E-05 24.1 4.7 27 400-426 3-29 (34)
315 PF02259 FAT: FAT domain; Int 89.5 17 0.00038 33.5 20.0 55 158-216 4-58 (352)
316 PF07719 TPR_2: Tetratricopept 89.4 0.96 2.1E-05 24.7 4.0 23 157-179 6-28 (34)
317 PRK15180 Vi polysaccharide bio 89.2 20 0.00043 33.9 28.8 132 82-216 288-420 (831)
318 KOG0276 Vesicle coat complex C 89.2 8.7 0.00019 37.3 11.9 149 96-284 599-747 (794)
319 COG4455 ImpE Protein of avirul 89.1 2.2 4.7E-05 35.5 7.1 59 225-285 4-62 (273)
320 PF02284 COX5A: Cytochrome c o 89.1 4.9 0.00011 28.9 7.9 46 241-287 29-74 (108)
321 KOG1464 COP9 signalosome, subu 88.7 15 0.00033 31.8 19.6 203 181-384 20-252 (440)
322 KOG0276 Vesicle coat complex C 88.7 3.7 8.1E-05 39.6 9.2 23 261-283 669-691 (794)
323 PF00515 TPR_1: Tetratricopept 88.6 0.88 1.9E-05 25.0 3.4 31 439-469 2-32 (34)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 3.9 8.5E-05 29.0 7.0 47 344-390 23-69 (103)
325 PF13174 TPR_6: Tetratricopept 87.9 0.92 2E-05 24.5 3.2 19 130-148 11-29 (33)
326 KOG0890 Protein kinase of the 87.8 60 0.0013 37.6 26.0 313 127-470 1391-1734(2382)
327 PF13374 TPR_10: Tetratricopep 87.0 1.7 3.6E-05 25.1 4.3 29 399-427 3-31 (42)
328 KOG4234 TPR repeat-containing 87.0 12 0.00027 30.8 10.0 89 127-216 103-197 (271)
329 COG2976 Uncharacterized protei 86.8 16 0.00035 30.0 13.1 90 158-253 95-189 (207)
330 PF06552 TOM20_plant: Plant sp 86.6 16 0.00034 29.7 10.6 108 99-216 7-136 (186)
331 PF13174 TPR_6: Tetratricopept 86.4 0.98 2.1E-05 24.4 2.8 26 444-469 6-31 (33)
332 PF00637 Clathrin: Region in C 86.4 1.3 2.8E-05 34.7 4.5 133 48-202 8-140 (143)
333 PF11207 DUF2989: Protein of u 86.0 9.1 0.0002 31.7 9.0 72 169-241 123-197 (203)
334 COG3947 Response regulator con 85.6 24 0.00053 31.1 11.6 55 158-213 285-339 (361)
335 PF06552 TOM20_plant: Plant sp 84.9 9.2 0.0002 31.0 8.3 60 381-449 53-124 (186)
336 KOG4648 Uncharacterized conser 84.4 3.2 6.9E-05 37.0 6.1 84 230-318 105-189 (536)
337 PF13929 mRNA_stabil: mRNA sta 84.1 29 0.00064 30.6 15.8 118 201-318 142-262 (292)
338 PF13181 TPR_8: Tetratricopept 83.8 3.3 7.2E-05 22.5 4.2 27 400-426 3-29 (34)
339 COG1747 Uncharacterized N-term 83.5 44 0.00094 32.1 23.4 178 151-337 65-248 (711)
340 PF14669 Asp_Glu_race_2: Putat 83.2 24 0.00052 28.9 11.8 24 77-100 2-25 (233)
341 PF08424 NRDE-2: NRDE-2, neces 83.2 37 0.0008 31.0 15.4 123 345-469 48-185 (321)
342 KOG2034 Vacuolar sorting prote 82.9 61 0.0013 33.4 22.2 254 89-378 364-643 (911)
343 KOG1464 COP9 signalosome, subu 82.7 31 0.00068 30.0 22.1 264 150-423 24-328 (440)
344 PF00637 Clathrin: Region in C 82.6 0.52 1.1E-05 37.0 0.7 53 194-246 14-66 (143)
345 TIGR02561 HrpB1_HrpK type III 82.6 21 0.00046 27.9 12.3 52 340-393 22-74 (153)
346 KOG2063 Vacuolar assembly/sort 82.5 67 0.0015 33.6 15.7 39 196-234 600-638 (877)
347 PF07163 Pex26: Pex26 protein; 82.0 22 0.00047 31.1 9.9 88 87-175 87-181 (309)
348 COG4455 ImpE Protein of avirul 81.7 14 0.00031 30.9 8.4 74 86-161 4-81 (273)
349 PF07163 Pex26: Pex26 protein; 81.4 18 0.0004 31.6 9.2 85 194-281 90-181 (309)
350 TIGR03504 FimV_Cterm FimV C-te 81.3 4.4 9.6E-05 24.1 4.1 24 369-392 5-28 (44)
351 COG2909 MalT ATP-dependent tra 81.0 73 0.0016 33.0 28.0 222 163-388 426-684 (894)
352 TIGR02508 type_III_yscG type I 81.0 18 0.00039 26.0 8.3 79 97-182 19-98 (115)
353 KOG4642 Chaperone-dependent E3 80.7 29 0.00063 29.7 9.9 83 232-319 20-103 (284)
354 PF13181 TPR_8: Tetratricopept 80.5 5.5 0.00012 21.6 4.3 26 154-179 3-28 (34)
355 PF07721 TPR_4: Tetratricopept 80.0 4.1 8.8E-05 20.8 3.3 18 158-175 7-24 (26)
356 KOG1586 Protein required for f 79.2 39 0.00085 28.8 16.2 27 372-398 163-189 (288)
357 PRK11619 lytic murein transgly 78.1 84 0.0018 32.0 28.0 310 94-425 44-373 (644)
358 PHA02875 ankyrin repeat protei 77.8 66 0.0014 30.6 16.8 14 130-143 10-23 (413)
359 PF10579 Rapsyn_N: Rapsyn N-te 77.7 10 0.00022 25.9 5.3 47 410-461 18-66 (80)
360 PRK11619 lytic murein transgly 76.5 93 0.002 31.7 31.4 47 372-421 416-462 (644)
361 COG3947 Response regulator con 76.0 56 0.0012 28.9 14.7 54 263-318 284-337 (361)
362 TIGR03504 FimV_Cterm FimV C-te 75.6 5.1 0.00011 23.8 3.2 20 160-179 7-26 (44)
363 PF10345 Cohesin_load: Cohesin 75.2 99 0.0021 31.4 31.1 195 81-287 28-254 (608)
364 KOG4507 Uncharacterized conser 74.8 30 0.00066 33.7 9.5 113 69-182 196-313 (886)
365 KOG4642 Chaperone-dependent E3 74.2 56 0.0012 28.1 10.7 117 129-247 20-142 (284)
366 KOG4077 Cytochrome c oxidase, 73.8 36 0.00079 25.7 9.1 46 433-478 79-124 (149)
367 PF12862 Apc5: Anaphase-promot 73.7 30 0.00064 24.7 7.5 34 264-297 47-80 (94)
368 PF10345 Cohesin_load: Cohesin 73.5 1.1E+02 0.0024 31.1 33.7 178 69-248 42-251 (608)
369 cd00280 TRFH Telomeric Repeat 73.4 22 0.00047 28.9 7.1 46 99-147 85-139 (200)
370 PF11838 ERAP1_C: ERAP1-like C 72.6 76 0.0016 28.9 14.7 145 67-212 105-262 (324)
371 KOG2066 Vacuolar assembly/sort 72.6 1.2E+02 0.0026 31.1 27.4 154 89-249 362-532 (846)
372 PF11817 Foie-gras_1: Foie gra 72.2 30 0.00065 30.2 8.6 62 403-464 183-244 (247)
373 KOG4077 Cytochrome c oxidase, 72.1 30 0.00064 26.2 7.0 45 382-426 68-112 (149)
374 smart00028 TPR Tetratricopepti 71.6 9.8 0.00021 19.4 3.8 25 401-425 4-28 (34)
375 PRK09687 putative lyase; Provi 71.5 75 0.0016 28.4 26.8 73 327-408 205-277 (280)
376 PF11846 DUF3366: Domain of un 70.6 27 0.00058 29.1 7.7 37 433-469 139-175 (193)
377 PF07575 Nucleopor_Nup85: Nup8 70.2 1.2E+02 0.0027 30.3 18.0 25 84-108 149-173 (566)
378 PF10579 Rapsyn_N: Rapsyn N-te 70.1 17 0.00038 24.8 5.0 47 375-421 18-66 (80)
379 smart00386 HAT HAT (Half-A-TPR 69.6 11 0.00023 19.9 3.6 26 453-478 2-27 (33)
380 KOG4507 Uncharacterized conser 69.5 30 0.00064 33.8 8.2 99 375-479 619-717 (886)
381 cd08819 CARD_MDA5_2 Caspase ac 69.5 36 0.00078 23.8 7.0 66 102-172 21-86 (88)
382 COG0790 FOG: TPR repeat, SEL1 68.9 86 0.0019 28.0 17.8 116 343-470 128-269 (292)
383 PF14853 Fis1_TPR_C: Fis1 C-te 68.0 17 0.00037 22.7 4.4 27 446-472 9-35 (53)
384 PF09477 Type_III_YscG: Bacter 68.0 45 0.00098 24.4 10.8 81 95-182 18-99 (116)
385 PF11846 DUF3366: Domain of un 68.0 31 0.00066 28.7 7.5 54 234-287 120-173 (193)
386 cd00280 TRFH Telomeric Repeat 67.5 49 0.0011 27.0 7.8 41 405-453 118-158 (200)
387 PF13762 MNE1: Mitochondrial s 67.2 59 0.0013 25.5 9.9 81 190-271 42-128 (145)
388 PRK10941 hypothetical protein; 67.2 82 0.0018 27.9 10.1 58 228-287 187-244 (269)
389 PRK10941 hypothetical protein; 65.7 63 0.0014 28.6 9.1 56 126-181 188-244 (269)
390 PF08424 NRDE-2: NRDE-2, neces 65.6 1.1E+02 0.0024 28.0 15.8 25 370-394 161-185 (321)
391 KOG2062 26S proteasome regulat 64.6 1.7E+02 0.0037 29.8 14.1 123 268-391 511-634 (929)
392 PF11848 DUF3368: Domain of un 64.1 23 0.00049 21.5 4.4 33 447-479 11-44 (48)
393 KOG3807 Predicted membrane pro 63.6 1.2E+02 0.0025 27.5 11.4 58 228-285 281-338 (556)
394 PHA02875 ankyrin repeat protei 63.4 1.4E+02 0.003 28.4 15.9 213 162-398 9-230 (413)
395 PF12862 Apc5: Anaphase-promot 63.4 35 0.00075 24.3 6.1 20 447-466 50-69 (94)
396 KOG2297 Predicted translation 63.3 1.1E+02 0.0024 27.3 14.5 19 324-342 219-237 (412)
397 PF14689 SPOB_a: Sensor_kinase 63.1 28 0.0006 22.6 4.9 24 403-426 28-51 (62)
398 KOG0292 Vesicle coat complex C 62.3 55 0.0012 33.8 8.8 132 127-287 651-782 (1202)
399 PF14669 Asp_Glu_race_2: Putat 62.1 90 0.0019 25.8 16.4 59 404-462 138-205 (233)
400 PF14689 SPOB_a: Sensor_kinase 62.0 20 0.00043 23.2 4.1 17 160-176 31-47 (62)
401 PRK10564 maltose regulon perip 60.8 15 0.00033 32.6 4.4 35 185-219 254-289 (303)
402 KOG0686 COP9 signalosome, subu 60.7 1.5E+02 0.0032 27.8 13.7 25 225-249 153-177 (466)
403 PF11663 Toxin_YhaV: Toxin wit 60.0 14 0.0003 28.2 3.5 30 200-231 108-137 (140)
404 cd08819 CARD_MDA5_2 Caspase ac 59.9 58 0.0012 22.8 7.1 66 67-139 21-86 (88)
405 KOG2471 TPR repeat-containing 59.8 1.7E+02 0.0037 28.2 14.6 106 338-450 250-381 (696)
406 PF09477 Type_III_YscG: Bacter 59.4 68 0.0015 23.5 8.8 86 378-475 21-106 (116)
407 COG4259 Uncharacterized protei 58.9 65 0.0014 23.2 6.5 56 102-158 56-111 (121)
408 PF09868 DUF2095: Uncharacteri 58.9 43 0.00093 24.6 5.5 36 88-125 66-101 (128)
409 KOG2297 Predicted translation 58.7 1.4E+02 0.003 26.8 10.0 16 224-239 323-338 (412)
410 KOG3807 Predicted membrane pro 58.7 1.4E+02 0.0031 27.0 11.8 115 199-327 228-344 (556)
411 PF07064 RIC1: RIC1; InterPro 58.5 1.3E+02 0.0028 26.5 14.2 38 86-126 85-122 (258)
412 PF09670 Cas_Cas02710: CRISPR- 58.4 1.7E+02 0.0036 27.6 11.6 55 161-216 140-198 (379)
413 PF11817 Foie-gras_1: Foie gra 57.6 53 0.0012 28.6 7.4 24 330-353 220-243 (247)
414 PF14561 TPR_20: Tetratricopep 57.5 66 0.0014 22.8 8.0 57 256-312 20-76 (90)
415 PF10366 Vps39_1: Vacuolar sor 57.3 76 0.0016 23.4 7.2 27 365-391 41-67 (108)
416 COG4003 Uncharacterized protei 57.1 34 0.00074 23.3 4.5 36 444-479 37-72 (98)
417 PRK14956 DNA polymerase III su 57.0 1.5E+02 0.0032 28.9 10.5 15 165-179 213-227 (484)
418 KOG2396 HAT (Half-A-TPR) repea 56.3 2E+02 0.0043 27.9 36.1 101 359-466 455-558 (568)
419 PF11848 DUF3368: Domain of un 55.9 44 0.00095 20.2 5.1 32 374-405 13-44 (48)
420 KOG2062 26S proteasome regulat 55.8 2.5E+02 0.0053 28.8 22.0 123 335-466 508-634 (929)
421 PF09454 Vps23_core: Vps23 cor 55.2 24 0.00053 23.1 3.6 49 396-450 6-54 (65)
422 KOG0991 Replication factor C, 55.0 1.4E+02 0.003 25.7 11.2 125 155-288 133-268 (333)
423 KOG1586 Protein required for f 54.4 1.4E+02 0.0031 25.7 16.4 58 407-469 163-226 (288)
424 TIGR02508 type_III_yscG type I 54.3 82 0.0018 22.9 7.5 58 406-474 47-104 (115)
425 PF04090 RNA_pol_I_TF: RNA pol 54.1 1.3E+02 0.0028 25.1 9.0 62 83-145 41-102 (199)
426 KOG1308 Hsp70-interacting prot 53.5 17 0.00037 32.7 3.5 88 271-360 127-214 (377)
427 COG2137 OraA Uncharacterized p 53.3 1.2E+02 0.0027 24.7 11.5 87 52-143 39-125 (174)
428 KOG2471 TPR repeat-containing 53.1 2.2E+02 0.0048 27.5 13.7 107 373-482 250-380 (696)
429 COG4003 Uncharacterized protei 52.7 50 0.0011 22.6 4.7 36 88-125 36-71 (98)
430 KOG0376 Serine-threonine phosp 52.1 41 0.00089 32.0 5.9 84 230-318 12-96 (476)
431 KOG0376 Serine-threonine phosp 51.4 46 0.001 31.6 6.1 101 129-232 14-115 (476)
432 COG0790 FOG: TPR repeat, SEL1 51.4 1.8E+02 0.0039 26.0 18.6 151 95-254 53-222 (292)
433 PF11663 Toxin_YhaV: Toxin wit 51.4 21 0.00044 27.4 3.2 29 61-92 109-137 (140)
434 PRK14958 DNA polymerase III su 50.7 2.6E+02 0.0057 27.6 11.9 45 100-146 181-225 (509)
435 PRK13342 recombination factor 50.1 2.4E+02 0.0051 27.0 17.8 42 190-231 230-274 (413)
436 KOG1308 Hsp70-interacting prot 49.9 13 0.00027 33.5 2.2 90 131-221 126-216 (377)
437 KOG2908 26S proteasome regulat 49.5 2.1E+02 0.0045 26.2 14.8 55 126-180 82-143 (380)
438 PRK10564 maltose regulon perip 48.9 41 0.0009 29.9 5.1 30 366-395 260-289 (303)
439 PF04762 IKI3: IKI3 family; I 48.8 3.8E+02 0.0083 29.0 17.4 135 80-216 692-843 (928)
440 PF09868 DUF2095: Uncharacteri 48.7 58 0.0012 24.0 4.9 36 444-479 67-102 (128)
441 PF09670 Cas_Cas02710: CRISPR- 48.6 2.4E+02 0.0052 26.6 10.9 56 302-357 139-198 (379)
442 COG2178 Predicted RNA-binding 48.1 1.6E+02 0.0035 24.4 11.1 62 267-328 38-103 (204)
443 PF13762 MNE1: Mitochondrial s 48.1 1.3E+02 0.0029 23.6 12.7 100 72-200 26-128 (145)
444 PF02631 RecX: RecX family; I 48.0 1.2E+02 0.0025 22.8 9.1 62 61-126 5-66 (121)
445 COG4976 Predicted methyltransf 47.9 52 0.0011 28.0 5.3 54 410-469 7-60 (287)
446 KOG0403 Neoplastic transformat 47.8 2.6E+02 0.0056 26.7 19.8 62 401-468 512-573 (645)
447 PF07575 Nucleopor_Nup85: Nup8 47.1 57 0.0012 32.7 6.6 61 119-179 405-465 (566)
448 PF02184 HAT: HAT (Half-A-TPR) 47.0 44 0.00095 18.3 3.1 21 135-155 3-23 (32)
449 KOG0687 26S proteasome regulat 46.9 2.3E+02 0.0049 25.8 12.9 94 295-390 105-208 (393)
450 KOG4279 Serine/threonine prote 46.7 3.5E+02 0.0075 27.9 14.0 25 447-471 375-399 (1226)
451 KOG3364 Membrane protein invol 46.5 1.4E+02 0.003 23.2 9.5 72 80-151 29-103 (149)
452 PF04190 DUF410: Protein of un 46.3 2.1E+02 0.0045 25.2 17.3 84 255-357 87-170 (260)
453 PF14853 Fis1_TPR_C: Fis1 C-te 46.0 72 0.0016 19.9 5.5 25 127-151 9-33 (53)
454 PF04190 DUF410: Protein of un 45.6 2.1E+02 0.0046 25.2 15.9 130 70-216 36-170 (260)
455 COG0735 Fur Fe2+/Zn2+ uptake r 45.0 1.5E+02 0.0033 23.3 7.5 25 193-217 26-50 (145)
456 PRK12798 chemotaxis protein; R 44.9 2.8E+02 0.006 26.3 18.2 49 166-214 126-175 (421)
457 KOG4567 GTPase-activating prot 44.8 1.6E+02 0.0034 26.5 7.8 71 207-283 263-343 (370)
458 PF10475 DUF2450: Protein of u 44.2 2.2E+02 0.0048 25.6 9.3 113 157-281 103-220 (291)
459 KOG0686 COP9 signalosome, subu 43.7 2.9E+02 0.0062 26.1 14.0 94 153-248 151-255 (466)
460 KOG4279 Serine/threonine prote 43.5 3.9E+02 0.0085 27.6 16.8 188 139-357 183-395 (1226)
461 PF09454 Vps23_core: Vps23 cor 43.4 94 0.002 20.4 5.1 52 79-132 4-55 (65)
462 PRK14956 DNA polymerase III su 43.2 3.3E+02 0.0071 26.6 11.5 42 103-146 186-227 (484)
463 PF13934 ELYS: Nuclear pore co 43.1 2.2E+02 0.0047 24.5 11.1 79 131-215 90-168 (226)
464 KOG4567 GTPase-activating prot 42.0 2.6E+02 0.0057 25.2 9.7 70 242-318 263-342 (370)
465 COG0735 Fur Fe2+/Zn2+ uptake r 41.9 1.6E+02 0.0035 23.1 7.1 48 211-260 10-57 (145)
466 smart00638 LPD_N Lipoprotein N 41.6 3.8E+02 0.0083 27.0 25.9 62 152-218 310-371 (574)
467 cd07153 Fur_like Ferric uptake 41.1 90 0.0019 23.1 5.5 47 53-100 6-52 (116)
468 PF10475 DUF2450: Protein of u 40.8 2.6E+02 0.0056 25.1 9.2 22 228-249 133-154 (291)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 40.6 1.6E+02 0.0035 22.4 9.2 43 276-318 81-123 (126)
470 PF00244 14-3-3: 14-3-3 protei 40.5 2.4E+02 0.0053 24.4 11.7 162 86-248 4-195 (236)
471 KOG2659 LisH motif-containing 40.0 2.4E+02 0.0052 24.1 9.5 20 194-213 71-90 (228)
472 PF11768 DUF3312: Protein of u 39.8 3.8E+02 0.0083 26.4 10.3 25 263-287 413-437 (545)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 39.7 1.7E+02 0.0037 22.3 9.0 45 380-424 80-125 (126)
474 KOG2422 Uncharacterized conser 39.7 3.9E+02 0.0085 26.6 15.8 156 271-426 251-447 (665)
475 PF09986 DUF2225: Uncharacteri 39.6 2.4E+02 0.0052 24.0 10.1 67 401-469 121-196 (214)
476 COG2178 Predicted RNA-binding 39.4 2.2E+02 0.0049 23.6 10.0 18 270-287 133-150 (204)
477 COG5108 RPO41 Mitochondrial DN 39.1 1.6E+02 0.0034 29.7 7.7 90 157-249 33-130 (1117)
478 PF10255 Paf67: RNA polymerase 39.0 3.5E+02 0.0075 25.7 13.3 63 224-286 124-192 (404)
479 KOG0128 RNA-binding protein SA 38.9 4.8E+02 0.01 27.3 30.2 98 81-180 111-218 (881)
480 PRK14962 DNA polymerase III su 38.8 3.9E+02 0.0084 26.2 14.5 33 191-224 248-280 (472)
481 KOG0687 26S proteasome regulat 38.2 3.1E+02 0.0068 25.0 15.1 94 331-426 107-209 (393)
482 smart00638 LPD_N Lipoprotein N 38.2 4.3E+02 0.0094 26.6 21.2 52 131-184 321-372 (574)
483 PF11123 DNA_Packaging_2: DNA 37.7 1.2E+02 0.0027 20.3 4.7 30 135-164 13-43 (82)
484 KOG4814 Uncharacterized conser 37.7 1.8E+02 0.0038 29.2 7.7 85 269-355 365-455 (872)
485 KOG0292 Vesicle coat complex C 37.5 3.8E+02 0.0082 28.3 10.1 45 199-249 655-699 (1202)
486 KOG0545 Aryl-hydrocarbon recep 37.2 2.8E+02 0.0061 24.2 9.2 56 301-356 237-292 (329)
487 PF04097 Nic96: Nup93/Nic96; 37.2 4.7E+02 0.01 26.7 18.1 42 158-200 117-158 (613)
488 PF05944 Phage_term_smal: Phag 36.7 1.6E+02 0.0034 22.8 6.0 30 84-113 49-78 (132)
489 PF12926 MOZART2: Mitotic-spin 36.1 1.5E+02 0.0033 20.7 5.7 45 69-113 29-73 (88)
490 PRK12798 chemotaxis protein; R 36.1 3.9E+02 0.0084 25.4 19.7 49 200-248 125-174 (421)
491 PRK14135 recX recombination re 35.0 3.2E+02 0.0069 24.1 14.9 88 49-140 73-160 (263)
492 PTZ00131 glycophorin-binding p 34.9 2.9E+02 0.0063 23.6 21.1 197 191-391 116-354 (413)
493 PF14649 Spatacsin_C: Spatacsi 34.9 3.4E+02 0.0075 24.5 19.8 24 459-482 270-294 (296)
494 PRK11639 zinc uptake transcrip 34.5 2.5E+02 0.0053 22.8 7.3 65 67-133 10-74 (169)
495 COG5108 RPO41 Mitochondrial DN 34.3 2.5E+02 0.0055 28.3 8.2 78 333-410 33-115 (1117)
496 KOG0414 Chromosome condensatio 34.3 6.6E+02 0.014 27.6 19.6 84 340-424 569-665 (1251)
497 PRK14136 recX recombination re 34.3 3.5E+02 0.0077 24.4 12.2 70 141-212 231-301 (309)
498 KOG3677 RNA polymerase I-assoc 33.7 4.2E+02 0.0091 25.1 9.6 193 277-483 191-396 (525)
499 COG4259 Uncharacterized protei 33.7 1.9E+02 0.004 21.0 6.7 56 382-444 56-111 (121)
500 PF03745 DUF309: Domain of unk 32.8 1.4E+02 0.003 19.3 5.0 15 165-179 12-26 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-65 Score=515.46 Aligned_cols=458 Identities=15% Similarity=0.155 Sum_probs=374.3
Q ss_pred hhhhhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHH
Q 011472 9 TLYNIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRI 88 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (485)
++..+...+..|++.+|.++|+.|..++..+|+.. .+..++..+.+.|...+ +..+++.|.. ||..+|+.
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-----~~~~li~~~~~~g~~~e-Al~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-----YHAKFFKACKKQRAVKE-AFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-----HHHHHHHHHHHCCCHHH-HHHHHHHcCC----CCHHHHHH
Confidence 34455566778999999999999999988888532 34667777777776666 5557666653 88888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHhcC
Q 011472 89 IIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYACAK 166 (485)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~~~ 166 (485)
++.+|++.|+++.|.++|+.|.+.| +.++..+++.++.+|++.|++++|.++|++|.+.+ ||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 8888888888888888888888877 66778888888888888888888888888888765 78888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH--cCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 011472 167 SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE--KGIDCDKYTFSILLSACAAASDGEGIDKI 244 (485)
Q Consensus 167 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 244 (485)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888876 56888888888888888888888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhc
Q 011472 245 VAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQN 323 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~ 323 (485)
|+.|. +.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ ..||..+|+.++.+|++.|++++|.++|+ +.+.+
T Consensus 602 f~~M~-e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 602 YQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHH-HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 88888 77888888888888888888888888888888888876 55667888888888888888888888888 55677
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011472 324 LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYL 403 (485)
Q Consensus 324 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 403 (485)
..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh----c-------------------CCHhHHHHH
Q 011472 404 MATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK----E-------------------RDIEGADYF 460 (485)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~ 460 (485)
++.+|++.|++++|.+++.+|.+. |+.||..+|+.++..|.+ + +..+.|..+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~-----Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKED-----GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 888888888888888888888885 888888888888765432 1 123568888
Q ss_pred HHHHhcCCC-CCHHHHHHHH-HHHhc
Q 011472 461 IKLLTGKEI-ISADLQDRLL-NNIRN 484 (485)
Q Consensus 461 ~~~~~~~~~-~~~~~~~~l~-~~~~~ 484 (485)
|++|.+.|. |+..+|..++ ++++.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 888888886 7888888888 66543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-63 Score=497.30 Aligned_cols=421 Identities=16% Similarity=0.166 Sum_probs=402.3
Q ss_pred CCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH
Q 011472 47 GSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGR-PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125 (485)
Q Consensus 47 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
...|..++..+++.|+..+ +.++|++|.+.|+ +|+..+++.++..|.+.|.+++|+.+|+.|.. ++..+|..+
T Consensus 370 ~~~~~~~y~~l~r~G~l~e-Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~L 443 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKD-CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNML 443 (1060)
T ss_pred chHHHHHHHHHHHCcCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHH
Confidence 3458899999999999988 8889999999986 57888889999999999999999999999964 688999999
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY 203 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 203 (485)
+.+|++.|+++.|.++|++|.+.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999886 889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA-DRGVVLDWTVYATAASGYVKAGLSDKALAVLR 282 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 282 (485)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ..++.||..+|++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999972 26789999999999999999999999999999
Q ss_pred HHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011472 283 KSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCH 361 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (485)
.|.+.+ ..|+..+|+.++.+|++.|++++|.++|+ |...+..||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 604 ~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 604 MIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999987 56778999999999999999999999999 6678899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+. |+.||..||
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-----Gi~Pd~~Ty 757 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-----GLCPNTITY 757 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhcCCC-CCHHHHHHHH
Q 011472 442 AACLGYYKKERDIEGADYFIKLLTGKEI-ISADLQDRLL 479 (485)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~ 479 (485)
+.++.+|++.|++++|.+++++|.+.|. |+..+|+.|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999997 8999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-61 Score=495.92 Aligned_cols=441 Identities=17% Similarity=0.196 Sum_probs=341.9
Q ss_pred HhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011472 15 AQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFR 94 (485)
Q Consensus 15 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 94 (485)
.....|++++|+++|+.++.++.. +|+.++.++++.|+..+ +..++++|...|+.||..+|+.++++|+
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~----------~~n~li~~~~~~g~~~~-A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLF----------SWNVLVGGYAKAGYFDE-ALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCee----------EHHHHHHHHHhCCCHHH-HHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 445678899999999999876554 45788889999988888 7778899998899898888888888877
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEII 174 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 174 (485)
+.+++..+.+++..+.+.| +.+++.+++.++.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred CccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 7777777777777777776 566777777777777777777777777777765 5666666666666666666666666
Q ss_pred HHHHHhCCCCCC------------------------------------------------------------------cc
Q 011472 175 MQQMRDRGLVKK------------------------------------------------------------------TI 188 (485)
Q Consensus 175 ~~~m~~~~~~p~------------------------------------------------------------------~~ 188 (485)
|++|.+.|+.|| ..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 666666555544 44
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (485)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. +.|+.|+..+|++|+.+|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHH
Confidence 5555555666666677777777777777777777777777777777777777777777777 667777888888888888
Q ss_pred HhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHH
Q 011472 269 VKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAE 348 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 348 (485)
++.|++++|.++|++|. .++..+|+.++.+|++.|+.++|+.+|+.+..+.+||..||+.++.+|++.|+++.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 88888888888888774 3466788888888888888888888888666778899999999999988888888888
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011472 349 KIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLL 428 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 428 (485)
+++..+.+.|+.+|..++++|+++|+++|++++|.++|+++ .||..+||.+|.+|++.|+.++|.++|++|.+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~- 583 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES- 583 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 88888888888888888777888888878777777777776 367777888888888888888888888877774
Q ss_pred ccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHh-cCCC-CCHHHHHHHH-HHHhcC
Q 011472 429 EAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLT-GKEI-ISADLQDRLL-NNIRNG 485 (485)
Q Consensus 429 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~-~~~~~~~~l~-~~~~~g 485 (485)
|+.||..||+.++.+|.+.|++++|.++|+.|. +.+. |+..+|++++ .|+++|
T Consensus 584 ----g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 584 ----GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred ----CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 777787888887777777788888888887777 4454 6777777777 777766
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-60 Score=487.19 Aligned_cols=439 Identities=13% Similarity=0.092 Sum_probs=410.8
Q ss_pred hhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011472 13 IKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKK 92 (485)
Q Consensus 13 ~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 92 (485)
+......|++++|.++|+.++.++..+ |+.++.++++.|+..+ +..++++|.+.|+.||..+|+.++.+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s----------~n~li~~~~~~g~~~e-Al~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCIS----------WNAMISGYFENGECLE-GLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcch----------hHHHHHHHHhCCCHHH-HHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 345566788999999999998765544 5899999999999998 77899999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHH
Q 011472 93 FRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAE 172 (485)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 172 (485)
|++.|+++.|.+++..|.+.| +.++..+++.++.+|++.|++++|.++|++|.. ||..+||.++.+|++.|++++|+
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999998 788999999999999999999999999999986 79999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011472 173 IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR 252 (485)
Q Consensus 173 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 252 (485)
++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. +
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~- 452 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-E- 452 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhcCCCCcccH
Q 011472 253 GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGY 331 (485)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 331 (485)
+|..+|+++|.+|++.|+.++|+++|++|... ..||..||+.++.+|++.|+.+.+.+++. +.+.+..++..++
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 57789999999999999999999999999864 77888999999999999999999999999 6788899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 011472 332 ICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411 (485)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (485)
+.++++|++.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 99999999999999999999887 5799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIR 483 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 483 (485)
|++++|.++|+.|.+. .++.|+..+|+.++.+|++.|++++|.+++++|. ..|+..+|+.|+ +|..
T Consensus 603 g~v~ea~~~f~~M~~~----~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 603 GMVTQGLEYFHSMEEK----YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRI 669 (857)
T ss_pred ChHHHHHHHHHHHHHH----hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH
Confidence 9999999999999943 5999999999999999999999999999999984 348888999999 7754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-59 Score=470.58 Aligned_cols=414 Identities=14% Similarity=0.102 Sum_probs=207.2
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDL 128 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (485)
+|+.++..+.+.++... +..++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|.+ ++..+++.++.+
T Consensus 125 t~~~ll~a~~~~~~~~~-a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~ 198 (697)
T PLN03081 125 TYDALVEACIALKSIRC-VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHhCCCHHH-HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHH
Confidence 44444444444443333 344444444444444444444444444444444444444444432 233444444444
Q ss_pred HHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 129 IAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
|++.|++++|.++|++|...+ |+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 444444444444444444433 344444444444444444444444444444444444555555555555555555555
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.++|++|. ++|..+|++++.+|++.|++++|.++|++|. +.|+.||..||+.++.+|++.|++++|.+++..|.+
T Consensus 279 ~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 279 RCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 55555543 2344555555555555555555555555554 445555555555555555555555555555555554
Q ss_pred hhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 011472 287 LMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366 (485)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (485)
.+ ..++..+|++|+.+|++.|++++|.++|+.+. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 354 ~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44 33444555555555555555555555555332 244555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 367 NHLIDAYCRRGLLHKAETLIYKAQL-RGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.|+
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~--------~~~p~~~~~~~Ll 501 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA--------PFKPTVNMWAALL 501 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--------CCCCCHHHHHHHH
Confidence 5555555555555555555555543 345555555555555555555555555554432 3445555555555
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
.+|...|+++.|..+++++.+.+|.+..+|..|+ .|++.|
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 5555555555555555555554444445555555 555544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-58 Score=462.09 Aligned_cols=417 Identities=15% Similarity=0.148 Sum_probs=395.5
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEE-GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLD 127 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (485)
+++.++..+.+.|+..+ +..+|+.|... +..||..+|+.++.+|.+.++++.+.+++..|.+.| +.+++.+++.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~-Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHRE-ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 68999999999999888 77799999876 478999999999999999999999999999999998 6789999999999
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHH
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 207 (485)
.|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. . +|..+|++++.+|++.|++++|+++|++|...
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-E----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-C----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999997 4 68899999999999999999999999999987
Q ss_pred hccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 011472 288 MMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366 (485)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (485)
+ ..||..||+.++.+|++.|++++|.+++. +.+.+.+||..+|+.++++|++.|++++|.++|++|. .||..+|
T Consensus 320 g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 320 G-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred C-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 7 66778999999999999999999999999 6678889999999999999999999999999999995 4699999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHH
Q 011472 367 NHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLG 446 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 446 (485)
|+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+. .++.|+..+|+.+++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g~~p~~~~y~~li~ 470 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYACMIE 470 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 599999999999999
Q ss_pred HHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 447 YYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
+|++.|++++|.+++++|. ..|+..+|+.|+ +|...|
T Consensus 471 ~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHK 508 (697)
T ss_pred HHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcC
Confidence 9999999999999998763 237888999999 887765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-28 Score=255.24 Aligned_cols=440 Identities=15% Similarity=0.066 Sum_probs=231.0
Q ss_pred hccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011472 18 GLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYK 97 (485)
Q Consensus 18 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 97 (485)
..|+.++|...|..+....+... ..+..+...+...|+..+ +...++...+.. +.+......++..+.+.|
T Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~-A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELDPENA-------AARTQLGISKLSQGDPSE-AIADLETAAQLD-PELGRADLLLILSYLRSG 445 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhCCChHH-HHHHHHHHHhhC-CcchhhHHHHHHHHHhcC
Confidence 34555555555555443322211 122333333344444444 333444443322 112223333444455555
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 011472 98 RFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQ 176 (485)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 176 (485)
++++|.++++.+.... +.++..+..+...+...|++++|...|+++.+..|+ ...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555554432 334445555555555566666666666655554433 3445555555555566666666666
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 011472 177 QMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL 256 (485)
Q Consensus 177 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 256 (485)
++.+.+.. +..++..+...+.+.|++++|..+++++.+.+. .+...+..+...+.+.|++++|..+++.+. +.. +.
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~ 599 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAA-DAA-PD 599 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHH-HcC-CC
Confidence 55554322 445555555555556666666666665554422 233444555555566666666666666655 322 24
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
+...|..+..+|...|++++|...|+++.+. .+.+...+..+..++...|++++|...|+......+.+..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4555556666666666666666666665554 23334455556666666666666666666544444445555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH
Q 011472 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (485)
.+...|++++|..+++.+.+.++ .+...+..+...+...|++++|...|+++.+.+ |+..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 66666666666666665555432 244445555555566666666666666655533 333455555555666666666
Q ss_pred HHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Q 011472 417 GVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIR 483 (485)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 483 (485)
|.+.++++++ ..+.+...+..+...+.+.|++++|.+.|+++.+..|.++..+..+. .|.+
T Consensus 755 A~~~~~~~l~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 755 AVKTLEAWLK------THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHH------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 6666666554 33334555555555566666666666666666665555555555555 4443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=7e-28 Score=252.68 Aligned_cols=444 Identities=12% Similarity=0.038 Sum_probs=245.3
Q ss_pred hhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011472 16 QLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRL 95 (485)
Q Consensus 16 ~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 95 (485)
....++..+|...|..+...++... .....+...+.+.|+... +..+++.+... .+++..++..+...+..
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 477 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPELG-------RADLLLILSYLRSGQFDK-ALAAAKKLEKK-QPDNASLHNLLGAIYLG 477 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCcch-------hhHHHHHHHHHhcCCHHH-HHHHHHHHHHh-CCCCcHHHHHHHHHHHh
Confidence 3445666777777766554433221 223344445555555555 44455555542 34455566666666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 011472 96 YKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEII 174 (485)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 174 (485)
.|++++|.+.|+.+.+.. +.++.....+...+...|++++|.+.|+++....|+ ..++..+...+.+.|++++|...
T Consensus 478 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665543 233444444455555556666666666555554432 34455555555555555555555
Q ss_pred HHHHHhCCCC---------------------------------CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 011472 175 MQQMRDRGLV---------------------------------KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221 (485)
Q Consensus 175 ~~~m~~~~~~---------------------------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (485)
|+++...+.. .+..+|..+..++...|++++|...|+.+.+.. +.+
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 5555443221 233444444444444445555555444444432 112
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 222 KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 222 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
...+..+..++.+.|++++|..+|+++. +... .+..++..++..+...|++++|.++++.+... .+.+...+..+.
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 710 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRAL-ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEG 710 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHH
Confidence 3334444444444555555555555444 2221 23444444555555555555555555555444 223334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
..+...|++++|...|+...... |+..++..++.++.+.|++++|.+.++.+.+..+ .+...+..+...|...|++++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRA-PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 55555555555555555332222 2224455555555666666666666666555432 245556666666666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFI 461 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (485)
|...|+++.+... ++...++.+...+...|+ .+|++.++++.+ ..+-+..++..+...+...|++++|.+.+
T Consensus 789 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 789 AIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665432 245666666666666666 566666666665 22234456667777888899999999999
Q ss_pred HHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 462 KLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
+++.+.++.++.++..+. .|++.|
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcC
Confidence 999998888888988888 888776
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-23 Score=187.42 Aligned_cols=380 Identities=13% Similarity=0.046 Sum_probs=327.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHH-HHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVY-IAL 158 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~l 158 (485)
+--..+|..+...+-..|++++|+..++.+++.. +...+.+.-+..++...|+.+.|...|.+....+|+.... +.+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 4456789999999999999999999999999875 3456777777888999999999999999999998886654 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCC
Q 011472 159 LNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD-KYTFSILLSACAAASD 237 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 237 (485)
...+...|++++|...|.+..+.... =...|..|...+-..|+...|++.|++... +.|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhc
Confidence 55666789999999999998876432 456799999999999999999999999987 4555 4588899999999999
Q ss_pred hHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHH
Q 011472 238 GEGIDKIVAMMEADRGVVL-DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRV 316 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (485)
++.|...|.+.. ...| ....+..+...|-..|.+|.|+..+++..+. .|.-..+|+.|..++-..|+..+|...
T Consensus 268 ~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 268 FDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred chHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999999988 3334 4567777888899999999999999999987 444457999999999999999999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011472 317 WKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (485)
|.....-.+-...+.+.|...+...|.++.|..+|....+--+. -...++.|...|-+.|++++|...+++.+. ++|
T Consensus 343 YnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 343 YNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 99887777777888999999999999999999999999875322 345688899999999999999999999998 778
Q ss_pred c-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 397 N-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK-ECLAACLGYYKKERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 397 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
+ ...|+.+...|-..|+.+.|++.+.+++. +.|.. ..++.|...|...|++.+|+.-+++..+..|..++.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 8 78899999999999999999999999995 46654 678889999999999999999999999999988888
Q ss_pred HHHHH
Q 011472 475 QDRLL 479 (485)
Q Consensus 475 ~~~l~ 479 (485)
|..++
T Consensus 493 ~cNll 497 (966)
T KOG4626|consen 493 YCNLL 497 (966)
T ss_pred hhHHH
Confidence 88777
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=9.5e-23 Score=192.17 Aligned_cols=294 Identities=13% Similarity=0.085 Sum_probs=165.1
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHHcC
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKK---TIDYNSMMNVYYQTG 201 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~ 201 (485)
...+...|++++|...|+++.+.+|+ ..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445566666666666666666553 34566666666666666666666666665422111 134555666666666
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 011472 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLD----WTVYATAASGYVKAGLSDKA 277 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 277 (485)
++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+. +.+..+. ...+..+...+...|++++|
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 666666666666654 22244556666666666666666666666665 3332221 11234455555666666666
Q ss_pred HHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 278 LAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY-NRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
...|+++.+. .+.+...+..+...+.+.|++++|.+.++.+....+.+ ..++..++.++...|++++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666554 23333455556666666666666666666443322211 23455556666666666666666666555
Q ss_pred cCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHh
Q 011472 357 RNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ---NNQSEKGVEAMKKALVL 427 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 427 (485)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++++.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 42 34444455566666666666666666665553 3555555555555443 33556666666666653
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.8e-20 Score=197.74 Aligned_cols=434 Identities=12% Similarity=0.005 Sum_probs=303.6
Q ss_pred hHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhc-CCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011472 14 KAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLS-PMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKK 92 (485)
Q Consensus 14 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 92 (485)
......|+.++|...|......++.... .. ...+..+. ..|+..+ +...++++.+.. |-+...+..+...
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~------la-~~y~~~~~~~~g~~~~-A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELD------LA-VEYWRLVAKLPAQRPE-AINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChH------HH-HHHHHHHhhCCccHHH-HHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456678999999999987765544331 01 11222222 3355555 777888888764 5577788899999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC---------------CCChhHH-----------------------------------
Q 011472 93 FRLYKRFSHALQISMWMTKKSNF---------------VLTPADV----------------------------------- 122 (485)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~----------------------------------- 122 (485)
+...|++++|++.++++.+.... +..+...
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999988653210 0011000
Q ss_pred --HHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cchHH-------
Q 011472 123 --AIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKK-TIDYN------- 191 (485)
Q Consensus 123 --~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~------- 191 (485)
......+...|++++|...|++.....| +..++..+..+|.+.|++++|+..|++..+...... ...|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 0113345678999999999999988877 578899999999999999999999999987653321 11121
Q ss_pred -----HHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH---
Q 011472 192 -----SMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYAT--- 263 (485)
Q Consensus 192 -----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 263 (485)
.....+.+.|++++|...|+++.+... .+...+..+..++...|++++|++.|+++. +... .+...+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQAL-RMDP-GNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHH
Confidence 224456789999999999999998632 245667778889999999999999999988 4333 22333322
Q ss_pred ---------------------------------------HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 264 ---------------------------------------AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 264 ---------------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
+...+...|++++|++.|++..+. .|.+...+..+...|
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 233445678899999999988877 455567788888899
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------------------
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR--------------------------- 357 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------------- 357 (485)
.+.|++++|...++......+.+...+..+...+...++.++|...++.+...
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999665544444443333333333444444444433322100
Q ss_pred ------------CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 358 ------------NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 358 ------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
..+.+...+..+...+.+.|++++|...|++..+.... +...+..++..+...|++++|++.++.+.
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12335556677888888899999999999998885422 47788888889999999999999999877
Q ss_pred HhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 426 VLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 426 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+ ..| +...+..+..++...|++++|.++++++.+..+
T Consensus 665 ~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 665 A-------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred c-------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 4 244 455666777788889999999999999887654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.4e-20 Score=186.59 Aligned_cols=370 Identities=11% Similarity=-0.025 Sum_probs=288.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYA 163 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~ 163 (485)
.+......+.+.|++++|+..|+..++.. +++..+..+..++.+.|++++|...++...+..|+ ..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45667788889999999999999998865 56777777788889999999999999999888775 668888999999
Q ss_pred hcCCHHHHHHHHHHHHhCC----------------------------CC-CCcchHHHHHHHH-----------------
Q 011472 164 CAKSAEKAEIIMQQMRDRG----------------------------LV-KKTIDYNSMMNVY----------------- 197 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~----------------------------~~-p~~~~~~~l~~~~----------------- 197 (485)
..|++++|+.-|......+ .. ++...+..+...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987654432111 00 1111111111100
Q ss_pred -------------------HHcCChhhHHHHHHHHHHcC-CCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 011472 198 -------------------YQTGNYKKLDSLMHEMEEKG-IDCD-KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL 256 (485)
Q Consensus 198 -------------------~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 256 (485)
...+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|+..|++.. +... -
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l~P-~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-ELDP-R 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-C
Confidence 11257889999999998765 3343 4567777888889999999999999998 4332 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
....|..+...+...|++++|+..|+++... .+.+..+|..+...+...|++++|+..|+......+.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 4668888999999999999999999999887 55666899999999999999999999999877777777888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhc
Q 011472 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR------TWYLMATGYLQ 410 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~ 410 (485)
.+.+.|++++|...+++..+..+ .+...++.+...+...|++++|...|++..+.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999987643 256788999999999999999999999998753221111 12222333445
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 411 NNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.|++++|.++++++++. .| +...+..+...+.+.|++++|.+.|++..+...
T Consensus 521 ~~~~~eA~~~~~kAl~l-------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALII-------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 79999999999999863 34 445788899999999999999999999887654
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.2e-20 Score=198.95 Aligned_cols=458 Identities=10% Similarity=-0.024 Sum_probs=310.4
Q ss_pred hhhHhhhccccccccccccccCCccccchhhh---------hccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCC
Q 011472 12 NIKAQLGLGNVLDSSSSYSTATGTSTREVTIS---------LRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLD 82 (485)
Q Consensus 12 ~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~---------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (485)
.....+..|+.++|...++.....+|.+...- .......-.+.+.+.+.|+.++ +...++.+.+.. +|+
T Consensus 68 ~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~e-A~~~~~~~l~~~-p~~ 145 (1157)
T PRK11447 68 RFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEE-ALASYDKLFNGA-PPE 145 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHH-HHHHHHHHccCC-CCC
Confidence 34556778889999998888877776654211 0001112334456778888888 666778887643 444
Q ss_pred HHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----------
Q 011472 83 MEQ-LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL---------- 151 (485)
Q Consensus 83 ~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 151 (485)
... ...........|++++|++.++.+.+.. |-++.....+...+...|++++|...++++....+.
T Consensus 146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 432 2122222334699999999999999875 456777778888899999999999999987543210
Q ss_pred -----------hHHH----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011472 152 -----------PSVY----------------------------------IALLNAYACAKSAEKAEIIMQQMRDRGLVKK 186 (485)
Q Consensus 152 -----------~~~~----------------------------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 186 (485)
...+ ......+...|++++|+..|++..+.... +
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~ 302 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-D 302 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 0000 01134466789999999999999887543 7
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCc-chHH------------HHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011472 187 TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDK-YTFS------------ILLSACAAASDGEGIDKIVAMMEADRG 253 (485)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~ 253 (485)
...+..+..++.+.|++++|+..|++..+....... ..+. .....+.+.|++++|...|+++. ...
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al-~~~ 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR-QVD 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC
Confidence 788999999999999999999999999876432211 1121 22346778999999999999998 544
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH--------------------------------
Q 011472 254 VVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI-------------------------------- 301 (485)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-------------------------------- 301 (485)
. .+...+..+...+...|++++|++.|+++.+. .+.+...+..+.
T Consensus 382 P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 382 N-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 56677788999999999999999999999876 333333433333
Q ss_pred ----------HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 011472 302 ----------TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLID 371 (485)
Q Consensus 302 ----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (485)
..+...|++++|++.|+......+.+...+..+...+.+.|++++|...++++.+..+. +...+..+..
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al 537 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGL 537 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 33445677777877777666655666667777778888888888888888887764332 2222322223
Q ss_pred HHHHcCCHHHHHHHHHHHHHc---------------------------------------CCCCcHHHHHHHHHHHhccC
Q 011472 372 AYCRRGLLHKAETLIYKAQLR---------------------------------------GTEPNVRTWYLMATGYLQNN 412 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~---------------------------------------~~~p~~~~~~~li~~~~~~g 412 (485)
.+...|+.++|...++++... ..+++...+..+...+.+.|
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 333344444444433322100 01223445566777788888
Q ss_pred CHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 413 QSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
++++|++.|+++++ .-+.+...+..+...+...|++++|++.++.+.+..+.++..+..+. .+.+.|
T Consensus 618 ~~~~A~~~y~~al~------~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 618 DYAAARAAYQRVLT------REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred CHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 88888888888886 33346678888888888888888888888888887776666666666 665543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.2e-22 Score=185.45 Aligned_cols=296 Identities=14% Similarity=0.073 Sum_probs=166.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC---cchHHHHHHHHHhcCC
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD---KYTFSILLSACAAASD 237 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~ 237 (485)
.+...|++++|+..|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666655322 344566666666666666666666666655321111 1344555666666666
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc---chhHHHHHHHHHhcCCHHHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF---SRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 314 (485)
++.|..+|+++. +... .+..++..++..+.+.|++++|.+.++.+......++. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLV-DEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHH-cCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666665 3322 44555666666666666666666666666554211111 113444555566666666666
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011472 315 RVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT 394 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 394 (485)
..|+......+.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 666644443344444555566666666666666666666665433222344555666666666666666666666553
Q ss_pred CCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh---cCCHhHHHHHHHHHhcCC
Q 011472 395 EPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK---ERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 468 (485)
.|+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.+++..+++++.+++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 244444555666666666666666666666542 4666666655555443 666666666666665544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=3.6e-20 Score=183.01 Aligned_cols=330 Identities=8% Similarity=-0.098 Sum_probs=215.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHh
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYAC 164 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~ 164 (485)
...++..+.+.|++++|..+++...... +-.+.....++.+....|++++|...|+++....|+ ...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4455666677777777777777777664 345555666666666677777777777777776654 4566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKI 244 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 244 (485)
.|++++|+..|++..+.... +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 77777777777777665322 45566667777777777777777777665543221 2222222 336667777777777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH----HHHHHHHH
Q 011472 245 VAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD----VLRVWKRY 320 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~ 320 (485)
++.+. .....++...+..+...+...|++++|+..++++... .+.+...+..+...+...|++++ |...|+..
T Consensus 200 ~~~~l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 200 ARALL-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHH-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 77766 4333233444444556677777777777777777765 34445667777777777777764 67777765
Q ss_pred hhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH-
Q 011472 321 KQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR- 399 (485)
Q Consensus 321 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~- 399 (485)
....+.+...+..+...+...|++++|...+++..+..+. +...+..+..+|.+.|++++|...++++.+.+ |+..
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 5555556667777777777777777777777777765433 34456666777777777777777777777643 4432
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.+..+..++...|+.++|.+.|+++++
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233345566777777777777777765
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-21 Score=176.87 Aligned_cols=384 Identities=16% Similarity=0.097 Sum_probs=313.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHH
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLN 160 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~ 160 (485)
+....-.+-..+.+..+.+....--....+.. +...+++..+.+.+-..|++++|..+++.+.+..|+ ...|..+..
T Consensus 81 ~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~ 158 (966)
T KOG4626|consen 81 NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAA 158 (966)
T ss_pred cccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHH
Confidence 33333344445555556665544444444332 345677888888899999999999999999988775 678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcchH-HHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCCh
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLVKKTIDY-NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD-KYTFSILLSACAAASDG 238 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 238 (485)
++...|+.+.|.+.|.+..+.+ |+.... ..+....-..|+.++|...|.+.++. .|. ...|+.|...+...|+.
T Consensus 159 al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 159 ALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchH
Confidence 9999999999999999888764 443332 33444455679999999999998875 333 56788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
..|+..|++.. ..++ --...|-.|...|...+.+++|...+.+.... .+....++..+...|...|..+-|+..|+
T Consensus 235 ~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 235 WLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred HHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHH
Confidence 99999999998 4333 23567888999999999999999999998876 56667899999999999999999999999
Q ss_pred HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-
Q 011472 319 RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN- 397 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~- 397 (485)
+..+..+--+..|+.+..++-..|++.+|.+.|.+.+...+. -....+.|...|...|.+++|..+|....+ +.|.
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~ 387 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEF 387 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhh
Confidence 887777767788999999999999999999999999987543 456778899999999999999999999988 4566
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHH
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK-ECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQD 476 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 476 (485)
...++.|...|-++|++++|+..|++++ .+.|+. ..|+.+...|...|+.+.|.+.+.+....+|.-.+..+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-------rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEAL-------RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHH-------hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 6788999999999999999999999999 568865 68899999999999999999999999999887777788
Q ss_pred HHH-HHHhcC
Q 011472 477 RLL-NNIRNG 485 (485)
Q Consensus 477 ~l~-~~~~~g 485 (485)
.|. .|-.+|
T Consensus 461 NLasi~kDsG 470 (966)
T KOG4626|consen 461 NLASIYKDSG 470 (966)
T ss_pred hHHHHhhccC
Confidence 877 766554
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=9.7e-20 Score=180.64 Aligned_cols=355 Identities=12% Similarity=-0.002 Sum_probs=276.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh
Q 011472 124 IRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY 203 (485)
Q Consensus 124 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 203 (485)
.....+.+.|++++|...|++.....|+...|..+..+|.+.|++++|++.+++..+.... +...|..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCH
Confidence 3356788899999999999999998899889999999999999999999999999987533 567889999999999999
Q ss_pred hhHHHHHHHHHHcC----------------------------CCC-CcchHHHHHH------------------------
Q 011472 204 KKLDSLMHEMEEKG----------------------------IDC-DKYTFSILLS------------------------ 230 (485)
Q Consensus 204 ~~a~~~~~~m~~~g----------------------------~~p-~~~~~~~ll~------------------------ 230 (485)
++|+..|......+ ..| +...+..+..
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 99987665443211 011 1111111100
Q ss_pred ------HH------HhcCChHHHHHHHHHHHhcCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchh
Q 011472 231 ------AC------AAASDGEGIDKIVAMMEADRG-VVL-DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRA 296 (485)
Q Consensus 231 ------~~------~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 296 (485)
.. ...+++++|.+.|+... +.+ ..| ....+..+...+...|++++|+..|++.... .+.....
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~ 367 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQS 367 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH
Confidence 00 12257889999999998 543 223 4567788889999999999999999999886 4555678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc
Q 011472 297 YDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR 376 (485)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (485)
|..+...+...|++++|...|+......+.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 9999999999999999999999776666777889999999999999999999999999987543 566778889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHH-HHHHHHHHHHhcCCH
Q 011472 377 GLLHKAETLIYKAQLRGTEP-NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKE-CLAACLGYYKKERDI 454 (485)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 454 (485)
|++++|...|++..+.. | +...|+.+...+...|++++|++.|+++++.........++.. .+...+..+...|++
T Consensus 447 g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999998753 4 4788999999999999999999999999973000001111111 122222233447999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 455 EGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 455 ~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
++|.+++++..+..|.+...+..+. .|.+.|
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 9999999999998887777888888 877665
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.6e-20 Score=181.71 Aligned_cols=371 Identities=8% Similarity=-0.028 Sum_probs=288.3
Q ss_pred HhcCChHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSN-FVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKA 171 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 171 (485)
.++.+|+.---+|....+... ..-.......++..+.+.|++++|..+++.+....|+ ......++.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 345566554444443333210 0112233444567778899999999999999888765 45666677788889999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011472 172 EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC-DKYTFSILLSACAAASDGEGIDKIVAMMEA 250 (485)
Q Consensus 172 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 250 (485)
+..|+++...... +...+..+...+.+.|++++|...+++..+. .| +...+..+..++...|++++|...++.+.
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~- 171 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA- 171 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-
Confidence 9999999987544 6778888999999999999999999999885 34 45677888999999999999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 011472 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG 330 (485)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 330 (485)
.... .+...+..+ ..+...|++++|...++.+.... +.++...+..+..++...|++++|+..++......+.+...
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 4343 233344333 34788999999999999987763 22333455666788999999999999999776666777888
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHH
Q 011472 331 YICVISSLLKFDGMES----AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMA 405 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li 405 (485)
+..+...+...|++++ |...++++.+..+. +...+..+...+.+.|++++|...+++..+.. |+ ...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 8899999999999986 89999999987543 66788999999999999999999999999854 44 66777888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHH-HHHHHHHHHhcCCHhHHHHHHHHHhcCCCC-CHHHHHHHH-HH
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKEC-LAACLGYYKKERDIEGADYFIKLLTGKEII-SADLQDRLL-NN 481 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~-~~ 481 (485)
..+.+.|++++|+..|+++.+. .|+... +..+..++...|+.++|...|++..+..|. .+..|...+ .|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~-------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~ 397 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE-------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLAL 397 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHH
Confidence 9999999999999999999863 555433 444567789999999999999999988773 344555444 44
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=5.4e-19 Score=178.48 Aligned_cols=409 Identities=10% Similarity=-0.020 Sum_probs=306.7
Q ss_pred hHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 011472 50 MYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI 129 (485)
Q Consensus 50 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (485)
....+......|+..+ +..++.+... ..+.+...+..+...+...|++++|.++|+...+.. |.++.....+..++
T Consensus 18 ~~d~~~ia~~~g~~~~-A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAE-VITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 4555666777778777 5566666665 235666679999999999999999999999998874 45677777778889
Q ss_pred HhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHH
Q 011472 130 AKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208 (485)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 208 (485)
...|++++|...++++.+..|+ .. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..++|++
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999888775 55 888889999999999999999999987544 55666778888888999999999
Q ss_pred HHHHHHHcCCCCCc------chHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCHH-HH----HHHHHHHH
Q 011472 209 LMHEMEEKGIDCDK------YTFSILLSACA-----AASDG---EGIDKIVAMMEADRGVVLDWT-VY----ATAASGYV 269 (485)
Q Consensus 209 ~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~ 269 (485)
.++.... .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+ ...+..+.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 8876653 2331 01122222222 12234 678888888873322223321 11 11133456
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----cccHHHHHHHHHhcCCHH
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY----NRGYICVISSLLKFDGME 345 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~ 345 (485)
..|++++|+..|+.+.+.+...|+ .....+..+|...|++++|+..|+.+....+.+ ......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887432233 233446789999999999999999765443322 234666777889999999
Q ss_pred HHHHHHHHHHhcCC-----------CCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 011472 346 SAEKIFEEWESRNL-----------CHDI---RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411 (485)
Q Consensus 346 ~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (485)
+|..+++.+.+..+ .|+. ..+..+...+...|+.++|+.+++++..... -+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 99999999987632 1221 2345677788999999999999999988642 2478888999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccC-HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHH
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPS-KECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQD 476 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 476 (485)
|++++|++.++++++. .|+ ...+......+...|++++|+.+++++.+..|.++.+..
T Consensus 407 g~~~~A~~~l~~al~l-------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 407 GWPRAAENELKKAEVL-------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CCHHHHHHHHHHHHhh-------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999963 464 677777778899999999999999999999887766543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=2.8e-18 Score=173.33 Aligned_cols=393 Identities=12% Similarity=-0.025 Sum_probs=295.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHH
Q 011472 77 EGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVY 155 (485)
Q Consensus 77 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 155 (485)
...+.++.-..-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++.....|+ ...+
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred hccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3446677777888888899999999999999998733 355666888889999999999999999998888765 6677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 011472 156 IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 235 (485)
..+...+...|++++|+..+++..+.... +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 88889999999999999999999887433 555 888999999999999999999999986332 444556677788889
Q ss_pred CChHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHhhccCCcch-hH---
Q 011472 236 SDGEGIDKIVAMMEADRGVVLDW------TVYATAASGYV-----KAGLS---DKALAVLRKSEVLMMHNKFSR-AY--- 297 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~~~~-~~--- 297 (485)
|..+.|++.++... . .|+. .....++.... ..+++ ++|++.++.+.......|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 164 RLSAPALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CChHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 99999999998776 3 2332 11222333222 22334 788989998886522222211 11
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHHHHHHH
Q 011472 298 -DFVITQYAACGNKDDVLRVWKRYKQNLKVYN-RGYICVISSLLKFDGMESAEKIFEEWESRNLCH---DIRIPNHLIDA 372 (485)
Q Consensus 298 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 372 (485)
...+.++...|++++|+..|+.+....++++ .....+..++...|++++|...|+++.+..... .......+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1113345677999999999996654433211 123335778999999999999999988653321 12345566778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-----------CCc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH
Q 011472 373 YCRRGLLHKAETLIYKAQLRGT-----------EPN---VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK 438 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 438 (485)
+...|++++|..+++++.+... .|+ ...+..+...+...|+.++|++.++++.. ..+.+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------~~P~n~ 393 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY------NAPGNQ 393 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCH
Confidence 8999999999999999987531 123 23456677788999999999999999997 445577
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhc
Q 011472 439 ECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRN 484 (485)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 484 (485)
..+..+...+...|++++|++.+++..+..|.++..+..+. .+.+.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 88888999999999999999999999999998877766666 65544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2.3e-17 Score=163.67 Aligned_cols=441 Identities=9% Similarity=-0.011 Sum_probs=293.2
Q ss_pred hhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011472 12 NIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIK 91 (485)
Q Consensus 12 ~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 91 (485)
+...+...|+..+|...|..+...++.... ....++..+...|+..+ +..++++.. ...+........+..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~-------av~dll~l~~~~G~~~~-A~~~~eka~-~p~n~~~~~llalA~ 110 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSG-------QVDDWLQIAGWAGRDQE-VIDVYERYQ-SSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchh-------hHHHHHHHHHHcCCcHH-HHHHHHHhc-cCCCCCHHHHHHHHH
Confidence 444555667777777777776655555420 11155555556666666 555555555 112223333333355
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHH
Q 011472 92 KFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKA 171 (485)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (485)
.+...|++++|+++|+.+.+.. |-++..+..++..+...++.++|.+.++++....|+...+..++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 6677777888888888777765 34566666666777777777888887777777777655554444444445555557
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchH------HHHHHHH---H--hcC---C
Q 011472 172 EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTF------SILLSAC---A--AAS---D 237 (485)
Q Consensus 172 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~~~---~--~~g---~ 237 (485)
++.++++.+.... +...+..++.++.+.|-...|.++..+-... ..|...-+ ...++.- . ... -
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 7777777776533 5556667777777777777777665543211 11111000 0111100 0 011 1
Q ss_pred hHHHHHHHHHHHhcCCCCCCH-HH----HHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDW-TV----YATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~-~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
.+.|+.-++.+....+..|.. .. ..-.+-++...|+..++++.|+.+...+.+.|+ .+-.++.++|...+++++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~-y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD-YARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-HHHHHHHHHHHhcCCcHH
Confidence 344555566655222222322 22 223455678889999999999999988755565 899999999999999999
Q ss_pred HHHHHHHHhhcC------CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCcc---cHHHHHHH
Q 011472 313 VLRVWKRYKQNL------KVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL-----------CHDIR---IPNHLIDA 372 (485)
Q Consensus 313 a~~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~---~~~~l~~~ 372 (485)
|+.+|+.+.... +++......|..++...+++++|..+++.+.+.-+ .||.. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999653322 22333457899999999999999999999987422 12221 23456777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhc
Q 011472 373 YCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKE 451 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 451 (485)
+...|+..+|++.++++...... |......+...+...|.+.+|++.++.+.. +.| +..+......++...
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES-------LAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhh
Confidence 88999999999999999886533 688889999999999999999999977764 466 456777788889999
Q ss_pred CCHhHHHHHHHHHhcCCCCCHHH
Q 011472 452 RDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
|++++|..+.+.+.+..|.++.+
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCchhH
Confidence 99999999999999988865543
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=8e-17 Score=139.88 Aligned_cols=341 Identities=13% Similarity=0.091 Sum_probs=196.9
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q 011472 51 YKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIA 130 (485)
Q Consensus 51 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (485)
+.|+. +...|+..+++. +++.|.+.|++.+...--.|++..+-.+.-+-...-+++....+++.-+. ..-.
T Consensus 120 ~nL~k-mIS~~EvKDs~i-lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-------~~sW 190 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCI-LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-------TSSW 190 (625)
T ss_pred hHHHH-HHhhcccchhHH-HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-------cccc
Confidence 34443 334445666343 67777777777777766666655544443332222222222221110000 0001
Q ss_pred hhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHH
Q 011472 131 KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLM 210 (485)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (485)
+.|.+.+ -+|+..++ +..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-. ...++.
T Consensus 191 K~G~vAd--L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv 261 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLV 261 (625)
T ss_pred ccccHHH--HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHH
Confidence 2233322 33333332 55677777777777777777777777776666666777777777654322 226677
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 011472 211 HEMEEKGIDCDKYTFSILLSACAAASDGEG----IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK-ALAVLRKSE 285 (485)
Q Consensus 211 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 285 (485)
.+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|+ +.|+.|...+|..+|..+++.++..+ |..++.++.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 777777777777777777777777776654 446667777 77777777777777777777666543 444444443
Q ss_pred Hh-------hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CCCc---ccHHHHHHHHHhcCCHHHHHHH
Q 011472 286 VL-------MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL-----KVYN---RGYICVISSLLKFDGMESAEKI 350 (485)
Q Consensus 286 ~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~li~~~~~~~~~~~a~~~ 350 (485)
.. ...+.+...|...+..|.+..+.+-|.++....+.+. .|+. .-|..+....|+....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 1123333556666667777777777777666544332 1221 2345566666777777777777
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 351 FEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
|+.|.-.-.-|+..+...++++..-.|.++-..++|..++..|..-+...-..++..+++
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 777766656666677777777777777777777777777666544333333333333333
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=4.5e-16 Score=157.72 Aligned_cols=213 Identities=16% Similarity=0.075 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL 338 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 338 (485)
..|..+..++.. ++.++|+..+.+.... .+ +......+...+...|++++|...|+.+... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP-DAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC-chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHH
Confidence 334444444444 5666677766666554 22 2233333444456788888888888865433 34445566677778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHH
Q 011472 339 LKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 418 (485)
.+.|+.++|...++...+..+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888776422 2222223333344558899999988888874 467778888888888999999999
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
..++++++ ..+.+...+..+..++...|+.++|+..+++..+..|.++..+..+. +|...|
T Consensus 630 ~~l~~AL~------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 630 SDLRAALE------LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHH------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99998886 22335567777777888889999999999998888888888888887 777655
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.2e-15 Score=151.47 Aligned_cols=413 Identities=12% Similarity=0.032 Sum_probs=287.0
Q ss_pred hhcCCCCCCCCHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCC
Q 011472 56 MLSPMGDPNDSMVPLLDQWVEEGRPLDM-EQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG 134 (485)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (485)
...+.|+... +...|++..+.. |+. .....++..+...|+.++|+..+++.... .+........+...+...|+
T Consensus 43 i~~r~Gd~~~-Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAP-VLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHH-HHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCC
Confidence 3445667765 666667776543 342 22228888888889999999999988832 22334444444667888899
Q ss_pred HHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 135 IEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 135 ~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
+++|.++|+++.+..|+ +.++..++..+...++.++|++.++++.... |+...+-.++..+...++..+|++.++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999888765 5667777888888999999999999887763 45555544444444456666699999999
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHH---------hcCC---hHHHHH
Q 011472 214 EEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVY--ATAASGYV---------KAGL---SDKALA 279 (485)
Q Consensus 214 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g~---~~~A~~ 279 (485)
.+... -+...+..+..+..+.|-...|.++..+-. +. +.+....+ ...+.-.+ ...+ .+.|+.
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP-NL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc-cc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 88632 255667778888888888888887666543 11 11111110 00111111 1122 344555
Q ss_pred HHHHHHHhhcc-CCcch----hHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 280 VLRKSEVLMMH-NKFSR----AYDFVITQYAACGNKDDVLRVWKRYK-QNLKVYNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 280 ~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
-++.+...-.. |+... +..-.+-++...|+..++++.|+.+. .+.+....+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 55555543112 22212 22344557788999999999999665 44455666888999999999999999999999
Q ss_pred HHhcCC-----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCc---HHHHHHHHHHHhccCCH
Q 011472 354 WESRNL-----CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT-----------EPN---VRTWYLMATGYLQNNQS 414 (485)
Q Consensus 354 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~ 414 (485)
+..... .++......|.-+|...+++++|..+++++.+.-. .|| ...+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 976532 22333357789999999999999999999987321 122 23345567778999999
Q ss_pred HHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhc
Q 011472 415 EKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRN 484 (485)
Q Consensus 415 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 484 (485)
.+|++.++++.. .-+-|......+...+...|.+.+|++.++......|.+..+..... ++...
T Consensus 433 ~~Ae~~le~l~~------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 433 PTAQKKLEDLSS------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 999999999986 44558889999999999999999999999999888887777776666 65543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=4.3e-15 Score=150.74 Aligned_cols=373 Identities=13% Similarity=0.002 Sum_probs=263.4
Q ss_pred CCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh-hCCHHHHHHHHHhhhhcCCChHHHHH
Q 011472 80 PLDMEQLRII-IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK-VQGIEQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 80 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
.|+..+.... .+.|.+.|+|++|++.+..+.+.+ +.++.....+..+|.. .++ +.+..+++...+ .++.++..
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~a 252 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRIT 252 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHH
Confidence 3445555555 888899999999999999999886 3556656666667776 366 777777664222 46778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCcchHHHH------------------------------HHH----------
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLV-KKTIDYNSM------------------------------MNV---------- 196 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------~~~---------- 196 (485)
+...|.+.|+.++|.+++.++...-.. |...+|-.+ +.-
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 889999999999999888877543211 221111000 000
Q ss_pred -----------------------------------------------------HHHcCChhhHHHHHHHHHHc-C-C---
Q 011472 197 -----------------------------------------------------YYQTGNYKKLDSLMHEMEEK-G-I--- 218 (485)
Q Consensus 197 -----------------------------------------------------~~~~~~~~~a~~~~~~m~~~-g-~--- 218 (485)
..+.|+.++|.++|+..... + -
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 11223444444444443320 0 0
Q ss_pred -----------------------------------------------------------CC--CcchHHHHHHHHHhcCC
Q 011472 219 -----------------------------------------------------------DC--DKYTFSILLSACAAASD 237 (485)
Q Consensus 219 -----------------------------------------------------------~p--~~~~~~~ll~~~~~~g~ 237 (485)
++ +...|..+..++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 01 22233344444443 56
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVW 317 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (485)
.++|...+.+.. ... |+......+...+...|++++|...|+++... + ++...+..+..++.+.|+.++|...+
T Consensus 492 ~~eAi~a~~~Al-~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~-p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 492 PGVALYAWLQAE-QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D-MSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred cHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C-CCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667888777766 322 55444444555567899999999999997654 2 22355777788999999999999999
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Q 011472 318 KRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (485)
+......+++...+..+...+...|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..+.. |+
T Consensus 566 ~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd 641 (987)
T PRK09782 566 QQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE--PN 641 (987)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence 97665555444444444455556699999999999999864 467788999999999999999999999999864 54
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 398 -VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 398 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
...++.+...+...|++++|++.++++++ ..+-+...+..+..++...|++++|+..+++..+..|.+..+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHK------GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 77888888899999999999999999997 333467888999999999999999999999999988754443
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1e-16 Score=140.29 Aligned_cols=385 Identities=14% Similarity=0.091 Sum_probs=254.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC------hHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL------PSV 154 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 154 (485)
.+...+..|...|.....+.+|+..|+-+.+...++.....-..+...+.+.+.+.+|.++|+.....-|+ ..+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 33445566667777777788888888888776644333222222234445555566666655554444332 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC------------Cc
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC------------DK 222 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~ 222 (485)
.+.+.-.+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|..|+..-..| +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 3444444555566666666665554432 444433333333444455555555555554321111 11
Q ss_pred chHHH---------------------------------------------------------------HHHHHHhcCChH
Q 011472 223 YTFSI---------------------------------------------------------------LLSACAAASDGE 239 (485)
Q Consensus 223 ~~~~~---------------------------------------------------------------ll~~~~~~g~~~ 239 (485)
...+. -..-+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 00000 011256778999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHH------------------------------------HhcCChHHHHHHHHH
Q 011472 240 GIDKIVAMMEADRGVVLDWTVYATAASGY------------------------------------VKAGLSDKALAVLRK 283 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~A~~~~~~ 283 (485)
.|++++.-.. +.+-+.-...-+.|-..+ ...|++++|.+.+++
T Consensus 437 ~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9988888776 333222222111111111 235788999999988
Q ss_pred HHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 011472 284 SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI 363 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (485)
.... ...-+.....+.-.+-..|+.++|++.|-.+......+..+...+...|....+..+|.+++.+.... ++.|+
T Consensus 516 al~n--dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNN--DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcC--chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 8765 22223444455556778899999999998777777778888888999999999999999999887765 45578
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHH
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAA 443 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 443 (485)
.+.+.|.+.|-+.|+-..|.+..-+--.. ++-+..+..-|...|....-+++++.+|+++. -++|+..-|..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-------liqp~~~kwql 664 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-------LIQPNQSKWQL 664 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-------hcCccHHHHHH
Confidence 88999999999999999999887655443 44578888888889999999999999999986 67999999999
Q ss_pred HHHHH-HhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 444 CLGYY-KKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 444 l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
++..| .+.|++..|.++++.+..+.|.+.+....|+
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 88765 5789999999999999999998888888877
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3e-15 Score=142.88 Aligned_cols=199 Identities=10% Similarity=0.044 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCcccHHHHHHHHHh----------
Q 011472 273 LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ--NLKVYNRGYICVISSLLK---------- 340 (485)
Q Consensus 273 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~---------- 340 (485)
...+|...+++.... ...++..+..+...+.+...+..|.+-|.++.. ...+|..+...|.+.|.+
T Consensus 545 ~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 545 NLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred CcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 344444444444443 233334555555566666666666665553322 222555666666665543
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHH
Q 011472 341 --FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 341 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 418 (485)
.+..+.|.++|.++++..++ |...-|.+.-.++..|++++|..+|.+..+... -+..+|-.+.++|...|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 24578899999999988665 888889999999999999999999999998643 25678889999999999999999
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH-HHHHHH
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD-LQDRLL 479 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~ 479 (485)
+.|+...+. ..-.-+..+...|.+++.+.|.+.+|.+.+.......|.++. .||..+
T Consensus 701 qmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 701 QMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999999985 444557888999999999999999999999999988885544 444443
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.6e-15 Score=140.63 Aligned_cols=429 Identities=12% Similarity=-0.016 Sum_probs=329.6
Q ss_pred hhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 011472 42 ISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGR--PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTP 119 (485)
Q Consensus 42 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 119 (485)
..+..+...+.|-..+---|+... +..+...+...-. ..-...|..+.+++-..|++++|...|-...+.. .+.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~-v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~ 340 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYER-VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDN 340 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCC
Confidence 333334556777778877777777 8888777776532 3445668999999999999999999999988765 222
Q ss_pred hHHH--HHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCcchHHH
Q 011472 120 ADVA--IRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAK----SAEKAEIIMQQMRDRGLVKKTIDYNS 192 (485)
Q Consensus 120 ~~~~--~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ 192 (485)
..+. -+...+.+.|+++.+...|+.+.+..|+ ..+...|...|...+ ..+.|..++.+..+.-+. |...|-.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~ 419 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLE 419 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHH
Confidence 2233 3478899999999999999999998887 566667777777664 567788888777766433 7778888
Q ss_pred HHHHHHHcCChhhHHHHHHHHH----HcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC------CCHHH
Q 011472 193 MMNVYYQTGNYKKLDSLMHEME----EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADR--GVV------LDWTV 260 (485)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~------~~~~~ 260 (485)
+...+-.. +...++..|.... ..+-.+.....|.+...+...|+++.|...|....... ... ++..+
T Consensus 420 laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 87776554 4444477776554 44555677789999999999999999999999987320 112 22333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 011472 261 YATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK 340 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 340 (485)
--.+..++-..++.+.|.+.|..+.+. .|.-+..|..++......+...+|...++........++..++.++..+.+
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 344777777889999999999999987 555567788887666677899999999998777777888888889989999
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011472 341 FDGMESAEKIFEEWESRNL-CHDIRIPNHLIDAYCR------------RGLLHKAETLIYKAQLRGTEPNVRTWYLMATG 407 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 407 (485)
...+..|.+-|....+.-. .+|..+.-+|...|.+ .+..++|+++|.+.++...+ |...-|-+.-.
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhh
Confidence 9999999987777765422 3466665566665543 24678999999999987543 77888888899
Q ss_pred HhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC--CCHHHHHHHH-HHHhc
Q 011472 408 YLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI--ISADLQDRLL-NNIRN 484 (485)
Q Consensus 408 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~~~ 484 (485)
++..|++.+|..+|.+..+ ....+..+|..+.++|..+|++..|++.|+...+... .++.+...|. +|.++
T Consensus 656 LA~kg~~~~A~dIFsqVrE------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVRE------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhccCchHHHHHHHHHHH------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998 3445667899999999999999999999998877664 5788899998 88876
Q ss_pred C
Q 011472 485 G 485 (485)
Q Consensus 485 g 485 (485)
|
T Consensus 730 ~ 730 (1018)
T KOG2002|consen 730 G 730 (1018)
T ss_pred h
Confidence 5
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.2e-14 Score=126.55 Aligned_cols=429 Identities=12% Similarity=0.096 Sum_probs=289.8
Q ss_pred hhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCC--CHHHHHHHHHHcCCCCCHHHHHHH
Q 011472 12 NIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPND--SMVPLLDQWVEEGRPLDMEQLRII 89 (485)
Q Consensus 12 ~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 89 (485)
++...+..|.+-+++-++.++++.+..-.. .--..|++..+-...... +-++.|-.|...| ..+..+|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~------kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDVSE------KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCCCH------HHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 344556667788888899998877655331 112334444333322222 1222333333333 2233333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHhcCC
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYACAKS 167 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~ 167 (485)
+.|...+ -+|+. .|.++.++..++.++|+....+.|.+++++..... .+..+||.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E~------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred -----ccccHHH--HHHhh------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 3344433 23332 34578999999999999999999999999876643 567889988865432
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhh----HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHH-HH
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKK----LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG-ID 242 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~ 242 (485)
....+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +.
T Consensus 255 -~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred -hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 2237889999999999999999999999999998764 56788999999999999999999999999888754 44
Q ss_pred HHHHHHHh---cCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------hccCCcchhHHHHHHHHHhcCC
Q 011472 243 KIVAMMEA---DRGVV----LDWTVYATAASGYVKAGLSDKALAVLRKSEVL------MMHNKFSRAYDFVITQYAACGN 309 (485)
Q Consensus 243 ~~~~~~~~---~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~ 309 (485)
.+...+.. ...+. .|...+...+..|.+..+.+-|.++-.-+... |.......-|..+..+.|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 11222 24556677788888999999998887766543 1111122456777888888889
Q ss_pred HHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CH--------
Q 011472 310 KDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG-LL-------- 379 (485)
Q Consensus 310 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-------- 379 (485)
.+.-+..|+ +.....-|+..+...++++..-.|.++-..+++..+...|...+...-.-+...+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 999999999 55667779999999999999999999999999998887775444444333444444332 11
Q ss_pred -----HHHHHHH-------HHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHH---HH
Q 011472 380 -----HKAETLI-------YKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLA---AC 444 (485)
Q Consensus 380 -----~~a~~~~-------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~---~l 444 (485)
+-|..++ .+|.+ ........+...-.+.+.|..++|.+++....+. ..--|-....+ -+
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~----~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK----HNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc----CCcCCCCcchhhHHHH
Confidence 0111222 22333 2334566677777889999999999999998763 23334444444 56
Q ss_pred HHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 445 LGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 445 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
+++-....+..+|..+++-|...+.+.-+
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 66777889999999999999887765444
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=5.8e-13 Score=122.18 Aligned_cols=392 Identities=13% Similarity=0.039 Sum_probs=270.0
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-h
Q 011472 75 VEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFV-LTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-P 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 152 (485)
...|+..+...|-.=...|-..|..-.+..+....+.-|.-. -...++..-...|.+.+.++-|+.+|....+..|. .
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~ 550 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK 550 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh
Confidence 345666666666666666666666666666666665554110 11123333356677777788888888877776654 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
..|......=-..|..++-..+|++....-.+ ....|-....-+-..|++..|..++.+..+.... +...|-.-+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 56776666666677888888888887765322 4555655566666778888888888888776333 556777777778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
....+++.|..+|.+.. ...|+...|.--+....-.+..++|++++++..+. .+.-...|..+.+.+-+.++.+.
T Consensus 629 ~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 629 FENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence 88888888888888887 34566667666666666678888888888888877 45545778888888888888888
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
|.+.|..-...++-.+..|..+...-.+.|.+-.|..+++...-++++ +...|-..|++-.+.|+.+.|..++.+.++.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888766777777777888877778888888888888888877665 7788888888888888888888888777664
Q ss_pred CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 393 GTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
++-+...|..-|...-+.++-......+++ ..-|+.+...+...+....+++.|.+.|.+.++.++..-
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkk----------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKK----------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHh----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 333455555555555554443333333322 234555566666666666677777777777777776666
Q ss_pred HHHHHHH-HHHhcC
Q 011472 473 DLQDRLL-NNIRNG 485 (485)
Q Consensus 473 ~~~~~l~-~~~~~g 485 (485)
++|..+. .+.+.|
T Consensus 852 D~wa~fykfel~hG 865 (913)
T KOG0495|consen 852 DAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHHHHHhC
Confidence 6666666 555544
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5.1e-14 Score=131.60 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=141.3
Q ss_pred hCCHHHHHHHHHhhhhcCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHHcCChhhHHH
Q 011472 132 VQGIEQAASYFNCVPEKLKLPSVYIAL-LNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYN--SMMNVYYQTGNYKKLDS 208 (485)
Q Consensus 132 ~~~~~~A~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 208 (485)
.|+++.|++.+....+..+++..+..+ ..+..+.|+++.|.+.|.++.+.. |+...+. .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666666666555443333333333 233355666666666666665532 3332222 22445556666666666
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 011472 209 LMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW-------TVYATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 209 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 281 (485)
.++++.+.... +......+...|.+.|++++|.+++..+. +.+..++. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666654322 34455555666666666666666666666 33332111 11222222222333334444444
Q ss_pred HHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011472 282 RKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCH 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (485)
+.+... .+.+......+...+...|+.++|.++++.... .+|+.. ..++.+....++.+++.+..+...+..+.
T Consensus 253 ~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 443332 223344555555555556666666555553322 223321 11222223345555566666555554332
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|......+...+.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555556666666666666666666552 35555555566666666666666666655543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=7.1e-17 Score=144.20 Aligned_cols=261 Identities=15% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 011472 159 LNAYACAKSAEKAEIIMQQMRDRG-LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD 237 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 237 (485)
...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555554332222 1113333333444444455555555555555544322 23334444443 45555
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVW 317 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (485)
+++|.+++...- +.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAY-ERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccc-ccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555554443 211 23333444555555555555555555554433222334445555555555555555555555
Q ss_pred HHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Q 011472 318 KRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN 397 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 397 (485)
+......|.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...|++..+... .|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d 247 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DD 247 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cc
Confidence 55444444455555555666666666666666665555443 33555566666666666666666666666665431 14
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+.....+..++...|+.++|.++.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55556666666666666666666665543
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.3e-13 Score=121.81 Aligned_cols=397 Identities=14% Similarity=0.067 Sum_probs=206.9
Q ss_pred hhhhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHH
Q 011472 10 LYNIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRII 89 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (485)
++.+.-.+.++++++|+++|+++. +.+|+-..-|-..+..=-..|+... +.++|++|.+ ..|+...|.+.
T Consensus 111 lkYae~Emknk~vNhARNv~dRAv-------t~lPRVdqlWyKY~ymEE~LgNi~g-aRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 111 LKYAEFEMKNKQVNHARNVWDRAV-------TILPRVDQLWYKYIYMEEMLGNIAG-ARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHH-------HhcchHHHHHHHHHHHHHHhcccHH-HHHHHHHHHc--CCCcHHHHHHH
Confidence 556667788888888888888876 3344422223333332233344555 7778888885 67888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChH----HHHHHHHHHHhc
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPS----VYIALLNAYACA 165 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~ll~~~~~~ 165 (485)
|+.-.+.+.++.|..++++..-.+ |...++.-....=.+.|.+..|.++|+...+...+.. .+.++...=.++
T Consensus 181 I~fElRykeieraR~IYerfV~~H---P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q 257 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLVH---PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ 257 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHheec---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876543 4455555556666677888888888877766543322 333333333445
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHHcCChhhHHHH--------HHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 166 KSAEKAEIIMQQMRDRGLVK-KTIDYNSMMNVYYQTGNYKKLDSL--------MHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 166 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
..++.|.-+|.-..+.=.+- ....|......--+.|+.....+. |+.+.+.+ +-|-.+|--.++.-...|
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcC
Confidence 66777777776665542110 123344333333344554433332 23333331 224445555555555666
Q ss_pred ChHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHH--------hcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH--
Q 011472 237 DGEGIDKIVAMMEADRGVVLDW--TVYATAASGYV--------KAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY-- 304 (485)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 304 (485)
+.+...++|++.. . +++|-. ..|.-.|-... ...+.+.+.++|+...+. .|-...||.-+=-.|
T Consensus 337 ~~~~Ire~yErAI-a-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 337 DKDRIRETYERAI-A-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred CHHHHHHHHHHHH-c-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 6666666666665 2 333321 12222222211 234555555555555553 222223333322222
Q ss_pred --HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHH
Q 011472 305 --AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKA 382 (485)
Q Consensus 305 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 382 (485)
.+..+...|.+++...... -|-..+|-..|..-.+.++++.+..+++..++.++. |..+|......-...|+.|.|
T Consensus 413 feIRq~~l~~ARkiLG~AIG~-cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIGK-CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHHcccHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHH
Confidence 2344455555554432222 233344455555555555555555555555554443 444555544444455555555
Q ss_pred HHHHHHHHHcC-CCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 383 ETLIYKAQLRG-TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 383 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..+|.-.++.. +......|-..|+--...|.+++|..+|++.++
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 55555554321 111133344444444445555555555555554
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=6.5e-17 Score=144.47 Aligned_cols=258 Identities=17% Similarity=0.090 Sum_probs=77.9
Q ss_pred HHHHHhhCCHHHHHHHHHhh-hhc-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 126 LDLIAKVQGIEQAASYFNCV-PEK-LK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~-~~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
...+.+.|++++|.+++++. ... +| ++..|..+.......++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44444555555555555332 222 12 2334444444555556666666666666554433 34445555554 45566
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLR 282 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 282 (485)
+++|.+++....+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655544332 334445555555666666666666666655222333455555666666666666666666666
Q ss_pred HHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011472 283 KSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHD 362 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (485)
+..+. .|.+......++..+...|+.+++..+++......+.|+..+..+..++...|+.++|...+++..+..+. |
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d 247 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D 247 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-c
Confidence 66655 34444556666666666666666666665544444555555666666666666666666666666654332 5
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 363 IRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 363 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
+.....+.+++...|+.++|.++..+..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5555566666666666666666655543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=9.3e-14 Score=122.01 Aligned_cols=369 Identities=12% Similarity=0.028 Sum_probs=262.8
Q ss_pred HHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH----HHHHHhhCCHHHHHHHHHhh
Q 011472 71 LDQWVEEGRPLDMEQL-RIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR----LDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~~ 145 (485)
++..++...-|+.-.+ ..+...+.+.+.+.+|+..|+-.+++- ..++.++..-+ .-.+.+.|.++.|..-|+..
T Consensus 224 yeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~ 302 (840)
T KOG2003|consen 224 YEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHC 302 (840)
T ss_pred hhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHH
Confidence 3444455555554433 234455677778888888888777653 12222222222 23456788888888888888
Q ss_pred hhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc------------hHHHH--------------------
Q 011472 146 PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI------------DYNSM-------------------- 193 (485)
Q Consensus 146 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------~~~~l-------------------- 193 (485)
.+..|+..+-..|+-++..-|+-++..+.|.+|...-..||.. ..+.-
T Consensus 303 m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~ 382 (840)
T KOG2003|consen 303 MEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKA 382 (840)
T ss_pred HHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 8888886554445555555677888888888876542222211 11100
Q ss_pred -------------------------------------------HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHH-
Q 011472 194 -------------------------------------------MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL- 229 (485)
Q Consensus 194 -------------------------------------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll- 229 (485)
...+.++|+++.|++++.-+.+..-+.-...-+.|-
T Consensus 383 i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~ 462 (840)
T KOG2003|consen 383 IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCA 462 (840)
T ss_pred HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHH
Confidence 113567788899988888776543221111111110
Q ss_pred -H----------------------------------HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 011472 230 -S----------------------------------ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274 (485)
Q Consensus 230 -~----------------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 274 (485)
. .....|++++|.+.|++.. ..+-......|| +.-.+-..|++
T Consensus 463 l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~l 540 (840)
T KOG2003|consen 463 LRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNL 540 (840)
T ss_pred HHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCH
Confidence 0 0112588999999999998 544423333333 44456788999
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 354 (485)
++|++.|-++... ...+..+...+...|-...++..|++++-...+-++.|+...+.|.+.|-+.|+-.+|.+.+-.-
T Consensus 541 deald~f~klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds 618 (840)
T KOG2003|consen 541 DEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred HHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence 9999999998765 45566788889999999999999999999988999999999999999999999999999887655
Q ss_pred HhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-hccCCHHHHHHHHHHHHHhhccCCC
Q 011472 355 ESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY-LQNNQSEKGVEAMKKALVLLEAGTR 433 (485)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~ 433 (485)
-+- ++-+..+...|...|....-++++..+|++..- ++|+..-|..++..| .+.|++++|.++|+.... .
T Consensus 619 yry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr------k 689 (840)
T KOG2003|consen 619 YRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR------K 689 (840)
T ss_pred ccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------h
Confidence 443 455788888899999999999999999998876 679999999998766 568999999999999987 7
Q ss_pred CccCHHHHHHHHHHHHhcCC
Q 011472 434 WKPSKECLAACLGYYKKERD 453 (485)
Q Consensus 434 ~~p~~~~~~~l~~~~~~~g~ 453 (485)
++-|...+..|++.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 88899999999998888775
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.3e-13 Score=129.60 Aligned_cols=292 Identities=11% Similarity=0.051 Sum_probs=175.5
Q ss_pred HHhhCCHHHHHHHHHhhhhcCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHHcCChhh
Q 011472 129 IAKVQGIEQAASYFNCVPEKLKLPSVY-IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI--DYNSMMNVYYQTGNYKK 205 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 205 (485)
....|+++.|.+.+.+..+..|++..+ -....++.+.|+++.|.+.+.+..+.. |+.. .--.....+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 345778888888887777766654443 333466677788888888887776543 3332 23334666777788888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHH
Q 011472 206 LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA-TAAS---GYVKAGLSDKALAVL 281 (485)
Q Consensus 206 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~ 281 (485)
|...++.+.+.... +...+..+...+...|+++.|.+.+..+. +.++ ++...+. .-.. .+...+..+++.+.+
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888888776422 44566677777888888888888888887 5554 3333221 1111 112223333333444
Q ss_pred HHHHHhhc--cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH--HHHhcCCHHHHHHHHHHHHhc
Q 011472 282 RKSEVLMM--HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS--SLLKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 282 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~ 357 (485)
..+....+ .+.+...+..+...+...|+.++|.++++......+++......++. .....++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44444311 11345667777777777777777777777554444433321111222 223345666677777766655
Q ss_pred CCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 358 NLCHDI--RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 358 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322 33 445567777777777777777777433333457777777777777777777777777777654
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=7.3e-14 Score=130.55 Aligned_cols=285 Identities=13% Similarity=0.097 Sum_probs=222.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCChHHHH
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFS--ILLSACAAASDGEGID 242 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~ 242 (485)
.|+++.|.+.+....+..-.| ...|-....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888766653222 222333355558999999999999999874 45554333 3356888999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcc------hhHHHHHHHHHhcCCHHHHHHH
Q 011472 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS------RAYDFVITQYAACGNKDDVLRV 316 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 316 (485)
..++.+. +..+ -+......+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~-~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLL-EVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHH-hcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998 5553 567888899999999999999999999999875333221 1334444444555666777788
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011472 317 WKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (485)
|+......+.++.....+...+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..++..+....
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 88766666778888999999999999999999999999875 33432 22334445669999999999999986422
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 397 NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
|+..+..+...+.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466788999999999999999999999995 489999999999999999999999999998754
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=5.8e-13 Score=126.73 Aligned_cols=378 Identities=13% Similarity=0.063 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHH
Q 011472 83 MEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNA 161 (485)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~ 161 (485)
....-.....+...|++++|.+++.+++++. |..+..|..+...|-..|+.+++...+-.+...+| |...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3444445555666699999999999999986 67889999999999999999999998887777665 56889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchH----HHHHHHHHhcCC
Q 011472 162 YACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTF----SILLSACAAASD 237 (485)
Q Consensus 162 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~ 237 (485)
..+.|.++.|.-.|.+.++.... +...+---+..|-+.|+...|...|.++.....+.|..-+ -.++..+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999988543 5555566677888999999999999999987432222222 234566777888
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc--------------------------cC
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM--------------------------HN 291 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------~~ 291 (485)
-+.|.+.++......+-..+...++.++..|.+...++.|......+..... ..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 8999999988874444446667788899999999999999988888766100 01
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhc--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 011472 292 KFSRAYDFVITQYAACGNKDDVLRVWK-RYKQN--LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNH 368 (485)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (485)
.+... ..++-++.+....+....+.. ..... ...+...|.-+..++.+.|++.+|..+|..+......-+..+|-.
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 11111 122233444444444444444 22333 334566789999999999999999999999998755556778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---ccCCCCccCHHHHHHH
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLL---EAGTRWKPSKECLAAC 444 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~p~~~~~~~l 444 (485)
+.++|...|.+++|...|++.+.. .|+ ...-..|...+.+.|+.++|.+.+..+...- ....+..|+.......
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 999999999999999999999984 355 4455567777899999999999998854310 0113566777777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHhc
Q 011472 445 LGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 445 ~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
...+.+.|+.++-..+...|+.
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 7788899998887766666654
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=5.9e-14 Score=131.91 Aligned_cols=291 Identities=10% Similarity=-0.012 Sum_probs=216.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHH-HHHHHHHHhhCCHHHHHHHHHhhhhcCCChH--HHHHHHHHHHhcCCHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADV-AIRLDLIAKVQGIEQAASYFNCVPEKLKLPS--VYIALLNAYACAKSAEK 170 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~ 170 (485)
...|+++.|.+.+....+.. ++|... .....+..+.|+.+.|..++.+..+..|+.. +.-.....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 45699999999999887754 344333 3446778889999999999999887767654 34445788889999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH---HhcCChHHHHHHHHH
Q 011472 171 AEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC---AAASDGEGIDKIVAM 247 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~ 247 (485)
|.+.++.+.+.++. +...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+...+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998754 66788899999999999999999999999987543322211111221 222333333345554
Q ss_pred HHhcCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH--HHhcCCHHHHHHHHHHHhh
Q 011472 248 MEADRGV---VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ--YAACGNKDDVLRVWKRYKQ 322 (485)
Q Consensus 248 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 322 (485)
+. +... +.+...+..+...+...|+.++|.+.+++..+.. +++......++.. ....++.+.+.+.++....
T Consensus 251 ~~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WW-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HH-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44 2221 2378888899999999999999999999999873 3332211112222 2345778888888887766
Q ss_pred cCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 323 NLKVYN--RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 323 ~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
..+.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666 677799999999999999999999655444567888888999999999999999999998654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-12 Score=114.99 Aligned_cols=300 Identities=15% Similarity=0.134 Sum_probs=230.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcC
Q 011472 159 LNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGI--DCDKYTFSILLSACAAAS 236 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g 236 (485)
..++....+.+++++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 356666778899999888888888875555555555666678899999999999988731 115567777764432222
Q ss_pred ChH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHH
Q 011472 237 DGE-GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 237 ~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
.+. .|..+++ +. . --+.|+..+.+-|+-.++.++|...|++..+. .+....+|+.+.+-|....+...|.+
T Consensus 314 kLs~LA~~v~~-id---K--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 314 KLSYLAQNVSN-ID---K--YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHH-hc---c--CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH
Confidence 221 1222221 11 2 33457778888999999999999999999987 55566899999999999999999999
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011472 316 VWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 395 (485)
.++...+-.|-|-..|..++++|.-.+-..-|.-.|++.....+. |...|.+|..+|.+.++.++|.+.|......|-.
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999987544 8899999999999999999999999999987533
Q ss_pred CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 396 PNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK-ECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
+...+..|.+.|-+.++.++|...|.+.++.......+.|.. .....|..-+.+.+++++|........+-+
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 668899999999999999999999998887311111133322 233335566788999999988777666653
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1e-12 Score=125.08 Aligned_cols=342 Identities=14% Similarity=0.106 Sum_probs=261.4
Q ss_pred CChhHHHHH--HHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 011472 117 LTPADVAIR--LDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSM 193 (485)
Q Consensus 117 ~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 193 (485)
+++.....+ .+.+...|++++|.+++.+++...|. ...|.+|...|-+.|+.+++...+-..-..+.+ |...|-.+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 334344433 33344459999999999999998764 678999999999999999999988776666554 77889999
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH----HHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA----TAASGYV 269 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 269 (485)
.....+.|.+++|.-+|.+.++.. +++...+-.-...|-+.|+...|..-|.++. ....+.|..-+. ..+..+.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873 3354455556678999999999999999998 555534443333 3455667
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCC----------------------C
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ-NLK----------------------V 326 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----------------------~ 326 (485)
..++-+.|.+.++.....+....+...++.++..|.+...++.+......... ... |
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77888999999999888654556667899999999999999999887763322 000 1
Q ss_pred CcccHH----HHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011472 327 YNRGYI----CVISSLLKFDGMESAEKIFEEWESRN--LCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRT 400 (485)
Q Consensus 327 ~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (485)
+...|. .+.-++.+.+..+....+.....+.. +.-++..|.-+.++|...|++.+|..+|..+......-+...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 111222 23344556666666666666666665 333566788899999999999999999999998655556889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
|-.+..+|...|.+++|.+.|++++. ..| +...-..|...+.+.|+.++|.+.+..+..-+
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99999999999999999999999996 355 44566667777899999999999999976433
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.8e-14 Score=130.48 Aligned_cols=282 Identities=12% Similarity=-0.019 Sum_probs=198.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC----ChHHHHHHHHHHHhcCCH-HHHH
Q 011472 98 RFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK----LPSVYIALLNAYACAKSA-EKAE 172 (485)
Q Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~-~~a~ 172 (485)
...+|+..|..+.++. .-+......+..+|...+++++|+++|+.+....| +..+|.+.+..+-+.-.. --|.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4567888888755543 34456666667888888888888888888877654 566777777654332111 1122
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011472 173 IIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC-DKYTFSILLSACAAASDGEGIDKIVAMMEAD 251 (485)
Q Consensus 173 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 251 (485)
.+.+..+ -.+.+|.++.++|.-+++.+.|++.|++.++. .| ..++|+.+..-+....++|.|...|+... .
T Consensus 412 ~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~ 483 (638)
T KOG1126|consen 412 DLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-G 483 (638)
T ss_pred HHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-c
Confidence 2222222 25678888888888888888888888888774 44 56777777777777888888888888877 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccH
Q 011472 252 RGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGY 331 (485)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 331 (485)
... -+...|.-+...|.+.++++.|+-.|+.+.+. .|.+.+....+...+.+.|+.++|+.+++....-.+-|+..-
T Consensus 484 ~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 222 23345556777788888888888888888776 555667777777788888888888888887666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 332 ICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
...+..+...+++++|...++++.+.-+. +..++..+...|.+.|+.+.|..-|.-+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66777777788888888888888775322 55667777788888888888888777777644
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3.3e-13 Score=113.61 Aligned_cols=288 Identities=15% Similarity=0.082 Sum_probs=202.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc------hHHHHHHHHHhcCCh
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY------TFSILLSACAAASDG 238 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~g~~ 238 (485)
.++.++|.++|-+|.+.... +..+.-+|.+.|-+.|..+.|+.+.+.+.++ ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888875332 4555667778888888888888888887765 3332 233455667778888
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc---chhHHHHHHHHHhcCCHHHHHH
Q 011472 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF---SRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
|.|+++|..+. +.+. .-......|+..|-...+|++|+++-+++.+.+..+.. ...|.-+...+....+.+.|..
T Consensus 124 DRAE~~f~~L~-de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLV-DEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHh-cchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 88888888887 5333 34455667888888888888888888877766422222 1235566666667778888888
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011472 316 VWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 395 (485)
++.......+..+..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+.++.+..
T Consensus 202 ~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 202 LLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 888766666666666777888888888999999888888887665555667788888889999999888888888754
Q ss_pred CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh---cCCHhHHHHHHHHHhcC
Q 011472 396 PNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK---ERDIEGADYFIKLLTGK 467 (485)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 467 (485)
+....-..+...-....-.+.|..++.+-+.. +|+...+..++..... .|...+....++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR-------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444445555444555566677666665543 7888888888876543 44566666667766543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.9e-12 Score=111.94 Aligned_cols=364 Identities=13% Similarity=0.084 Sum_probs=257.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLT-PADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAY 162 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~ 162 (485)
.+......|.+.|.+++|++.|.+.++.. ++ |.-|.....+|...|+|++..+.-.+..+.+|+ +.++..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 35566777889999999999999999865 45 777888888999999999999988888887776 45566666677
Q ss_pred HhcCCHHHHHH----------------------HHHH---------HHhCC--CCCCcchHHHHHHHHHHc---------
Q 011472 163 ACAKSAEKAEI----------------------IMQQ---------MRDRG--LVKKTIDYNSMMNVYYQT--------- 200 (485)
Q Consensus 163 ~~~~~~~~a~~----------------------~~~~---------m~~~~--~~p~~~~~~~l~~~~~~~--------- 200 (485)
-..|++++|+. ++.+ +.+.+ +-|+....++....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 77777766643 1111 11111 223333333222222110
Q ss_pred ----------------C---ChhhHHHHHHHHHHc-CCCCCcc---------hHHHHH--HHHHhcCChHHHHHHHHHHH
Q 011472 201 ----------------G---NYKKLDSLMHEMEEK-GIDCDKY---------TFSILL--SACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 201 ----------------~---~~~~a~~~~~~m~~~-g~~p~~~---------~~~~ll--~~~~~~g~~~~a~~~~~~~~ 249 (485)
+ .+.+|.+.+.+-... -..++.. .-..++ ..+.-.|+.-.|..-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0 122222222221110 0111111 111111 12344688889999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcc
Q 011472 250 ADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNR 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 329 (485)
.....+ ...|--+...|....+.++....|+...+. .+.+..+|..-.+.+.-.+++++|..-|+...+-.+.+..
T Consensus 354 -~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 354 -KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred -hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 555433 333777888899999999999999999887 5556678999999999999999999999988888888888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-------HHHH-
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-------VRTW- 401 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~~- 401 (485)
.|..+.-+..+.++++++...|++..++ ++--+.+|+.....+...++++.|.+.|+..++.. |+ +.++
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE--~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE--PREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--cccccccccchhhh
Confidence 8888888888999999999999999887 55577899999999999999999999999988743 33 1111
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 402 -YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 402 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
-.++. +.-.+++..|++++.++++ +.| ....|..|.....+.|+.++|+++|++...
T Consensus 507 ~Ka~l~-~qwk~d~~~a~~Ll~KA~e-------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 507 HKALLV-LQWKEDINQAENLLRKAIE-------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhHhh-hchhhhHHHHHHHHHHHHc-------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12222 2234889999999999986 344 557888999999999999999999987654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-12 Score=115.55 Aligned_cols=307 Identities=12% Similarity=0.045 Sum_probs=195.6
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcC-CChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCcchHHHHHHHHHHcC
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKL-KLPS-VYIALLNAYACAKSAEKAEIIMQQMRDRGLV--KKTIDYNSMMNVYYQTG 201 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~ 201 (485)
..++......+++..-.+.....+ |... .-+....+.-...++++|+.+|+++.+..+- -|.++|..++-. ++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 445555556666666666666654 3322 2223333444567777777777777765311 155566665543 222
Q ss_pred ChhhHHHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011472 202 NYKKLDSLMHEMEEK--GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALA 279 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 279 (485)
+ ..+..+.+-... ...| .|+..+.+-|+-.++.++|..+|++.. +.+. -....|+.+..-|....+...|++
T Consensus 312 ~--skLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRAL-kLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRAL-KLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred h--HHHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHH-hcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 1 112222222111 1333 355566677777778888888888877 5554 445667777778888888888888
Q ss_pred HHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011472 280 VLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL 359 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 359 (485)
-++...+. .|.|-..|-.|.++|.-.+.+.-|+-.|+....-.|-|...|.+|+++|.+.++.++|.+.|......|-
T Consensus 386 sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 88887776 5666678888888888888888888888877766677777888888888888888888888888777654
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCC
Q 011472 360 CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL----RGT-EPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTR 433 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 433 (485)
. +...+..|...|-+.++.++|.+.|++-++ .|. .|. ....--|..-+.+.+++++|..+...... +
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~------~ 536 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK------G 536 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc------C
Confidence 3 556777788888888888888877776654 222 221 22223355567777888888877777665 4
Q ss_pred CccCHHHHHHHHHHHHh
Q 011472 434 WKPSKECLAACLGYYKK 450 (485)
Q Consensus 434 ~~p~~~~~~~l~~~~~~ 450 (485)
.+...--..|++.+.+
T Consensus 537 -~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 -ETECEEAKALLREIRK 552 (559)
T ss_pred -CchHHHHHHHHHHHHH
Confidence 6665555555554433
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.4e-13 Score=126.78 Aligned_cols=283 Identities=11% Similarity=-0.009 Sum_probs=223.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHhhCCHHHHHHHHHhh
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLT-PADVAIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
+...|.. .-..+.-+......+.++|...+++++|..+|+.+.+.....+. -+.|...+.-+ .+.-+---+-+.+
T Consensus 338 A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 338 ALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHHHHHHH
Confidence 4444455 33345555677889999999999999999999999987633222 23444333222 2222222222334
Q ss_pred hhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcch
Q 011472 146 PEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT 224 (485)
Q Consensus 146 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 224 (485)
.+..| .+.+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+. .|...
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchh
Confidence 44444 4899999999999999999999999999987533 788999999999999999999999998865 45556
Q ss_pred HHH---HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 225 FSI---LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 225 ~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
|++ +.-.|.+.++++.|+-.|+.+. +.++ .+......+...+-+.|+.|+|+.+++++... .+.++..-...+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~-~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~ 564 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV-EINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRA 564 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh-cCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHH
Confidence 665 5567999999999999999999 6555 45666667888889999999999999999877 566667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHD 362 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (485)
..+...+++++|+..++.++.-.+.+...|..++..|.+.|+.+.|..-|..+.+..+++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8899999999999999999999999999999999999999999999999999988765543
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.4e-11 Score=111.81 Aligned_cols=367 Identities=9% Similarity=-0.042 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh-HHHHHHHHH
Q 011472 83 MEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLP-SVYIALLNA 161 (485)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~ll~~ 161 (485)
..+|..-...|.+.+.++-|..+|...++- ++.+...+.....+--..|..++-..+|++....-|.. ..|-.....
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 356777777788888888899999988875 34444555555555557899999999999999887754 456666778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 011472 162 YACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI 241 (485)
Q Consensus 162 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 241 (485)
+...|++..|..++....+.... +...|-.-+.....+.+++.|..+|.+... ..|+...|.--++.---.++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 88899999999999999987655 788899999999999999999999999876 567777877777777778999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011472 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYK 321 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (485)
.+++++.. + .++.-...|-.+...+-+.++.+.|.+.|..=.+. .|.....|..|...--+.|.+-+|..+++...
T Consensus 671 ~rllEe~l-k-~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 671 LRLLEEAL-K-SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHH-H-hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999988 3 34233456777888888999999999999886665 55556789999998899999999999999888
Q ss_pred hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011472 322 QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW 401 (485)
Q Consensus 322 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 401 (485)
-..+-+...|...|+.-.+.|+.+.|..++.+.++..+ .+...|..-|....+.++--...+.+++ ..-|++..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVl 820 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVL 820 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhH
Confidence 88888999999999999999999999999999998744 3778888888888777775555544443 34577888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 402 YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
-.+...|-...++++|.+.|.++++ .-+.+-.+|.-+...+.+.|.-++-.+++.+.....|-
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk------~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVK------KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc------cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 8888889999999999999999996 33334578888888999999999999999998877663
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=7.4e-12 Score=108.83 Aligned_cols=286 Identities=15% Similarity=0.083 Sum_probs=181.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKI 244 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 244 (485)
.|+|.+|.++..+-.+.+-.| ...|-.-+++.-+.|+.+.+-.++.+..+.--.++...+-+........||.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554332 2334444455556666666666666665542233344444455555666666666666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc------chhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 245 VAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF------SRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.+++. +.+. -++........+|.+.|++.....++..+.+.+...+. ..+|..+++-....+..+.-...|+
T Consensus 176 v~~ll-~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLL-EMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHH-HhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 66665 4333 34455556666666666666666666666665432221 1356666666666666666666777
Q ss_pred HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH
Q 011472 319 RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNV 398 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 398 (485)
......+-++..-..++.-+.++|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..++-.+.. +-++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 66666666667777778888888888888888888887776655 112223445666666666666655432 2245
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 399 RTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
..+..|...|.+++.+.+|.+.|+.+++ ..|+..+|.-+.+++.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK-------LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777788888888888888888887774 57888888888888888888888888777655
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.6e-11 Score=106.73 Aligned_cols=284 Identities=13% Similarity=0.090 Sum_probs=155.2
Q ss_pred hCCHHHHHHHHHhhhhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHH
Q 011472 132 VQGIEQAASYFNCVPEKLKLP-SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLM 210 (485)
Q Consensus 132 ~~~~~~A~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (485)
.|+|.+|++...+..+.++.+ ..|..-..+--+.|+.+.+-+.+.+.-+..-.++...+-+..+.....|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 455555555555554444332 2233334445555555555555555555422333444444445555555555555555
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 011472 211 HEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW-------TVYATAASGYVKAGLSDKALAVLRK 283 (485)
Q Consensus 211 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 283 (485)
+++.+.+.. +.........+|.+.|++.....++..+. +.+.-.+. .+|..++.-....+..+.-...+++
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 555554332 33344555555666666666666666555 44442322 2344444444444444444445555
Q ss_pred HHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011472 284 SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHD 362 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (485)
.... ...++..-.+++.-+.++|+.++|.++.. .++....|. -...-.+.+.++.+.-.+..+...+..+. +
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 4443 22233455555566666666666666665 444444444 11222334555555555555555544222 4
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 363 IRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 363 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+.+++.+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 466777777777777777777777766663 47777777777777777777777777777665
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.4e-09 Score=96.77 Aligned_cols=389 Identities=11% Similarity=0.022 Sum_probs=208.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHH-HHHHHHHHhhCCHHHHHHHHHhh
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV-AIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
+.+|+++...-. .-+...|-..+..-.+...+..|..++++....- |..+.+ --.+-.=-..|++..|.++|++.
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444322 3455556666666667777777777777766532 111111 11122233567777777777777
Q ss_pred hhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc-CC-CCCcc
Q 011472 146 PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK-GI-DCDKY 223 (485)
Q Consensus 146 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~-~p~~~ 223 (485)
.+-.|+...|++.++.=.+-+.++.|..+|++..-. .|++.+|---.+.-.+.|....|..+|+...+. |- ..+..
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 777777777777777777777777777777777643 367777766666666777777777777666543 10 00112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------------------------------------CCCHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGV-------------------------------------------VLDWTV 260 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------------------~~~~~~ 260 (485)
.+.++..--.+...++.|.-+|+-.. +.-+ +.|..+
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAl-d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYAL-DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchH
Confidence 22222222223334444444444443 2111 122233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH--------HHhcCCHHHHHHHHHHHhhcCCCCcccHH
Q 011472 261 YATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ--------YAACGNKDDVLRVWKRYKQNLKVYNRGYI 332 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (485)
|--.+..-...|+.+...++|++.....++...-..|...|-. -....+.+.+.++|+....-+|-...||.
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 3333333333444444444444444331111111111111110 01233444444444433333333333333
Q ss_pred HHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011472 333 CVISSL----LKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408 (485)
Q Consensus 333 ~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (485)
.+--.| .++.++..|.+++.... |..|-..+|...|..-.+.+++|.+..++++.++.+.. |-.+|......-
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 322222 24455555555555544 34455566666666666777777777777777775432 456666666666
Q ss_pred hccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 409 LQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 409 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
...|+.+.|..+|.-++++ +.+......|...|+--...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~q----p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQ----PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcC----cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 6777777777777777764 33444455666666666677777777777777776654
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.9e-11 Score=106.80 Aligned_cols=352 Identities=13% Similarity=0.008 Sum_probs=242.8
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 204 (485)
.+-|.+.|++++|+++|.+.++..|+ +..|.....+|...|+|+++.+--.+..+.+.. -+..+..-..++-+.|+++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhhccHH
Confidence 45677899999999999999999999 788999999999999999998887777665322 2334444445555556655
Q ss_pred hHHHH----------------------HHH--------HHH-cC--CCCCcchHHHHHHHHHhc--------CC-----h
Q 011472 205 KLDSL----------------------MHE--------MEE-KG--IDCDKYTFSILLSACAAA--------SD-----G 238 (485)
Q Consensus 205 ~a~~~----------------------~~~--------m~~-~g--~~p~~~~~~~ll~~~~~~--------g~-----~ 238 (485)
+|+.- +.. -.+ .+ +-|......+....+... ++ +
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 54321 111 111 11 223333333333332110 11 1
Q ss_pred HH---------------HHHHHHHHHhcCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC
Q 011472 239 EG---------------IDKIVAMMEADRGVVLD-----------WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK 292 (485)
Q Consensus 239 ~~---------------a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 292 (485)
.+ |...+.+-.......++ ..+...-..-+.-.|+.-.|..-|+..... .+.
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--~~~ 358 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--DPA 358 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--Ccc
Confidence 11 21211111100000111 111112222345578999999999999887 333
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 011472 293 FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDA 372 (485)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (485)
+...|-.+..+|....+.++....|++..+-.+.++.+|..-.+...-.+++++|..-|++..+..+. ++..|-.+.-+
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a 437 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCA 437 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHH
Confidence 33458888899999999999999999999999999999999999999999999999999999987554 66677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH--HHHHHHHHh
Q 011472 373 YCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL--AACLGYYKK 450 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~ 450 (485)
.-+.++++++...|++.++. ++.-+..|+.....+..++++++|.+.|+.+++.....+++..+..++ ..++.. --
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qw 515 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-ch
Confidence 77899999999999999886 333488999999999999999999999999997522222332233222 222222 23
Q ss_pred cCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Q 011472 451 ERDIEGADYFIKLLTGKEIISADLQDRLL-NNIR 483 (485)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 483 (485)
.+++..|.+++++..+.+|.....|..|. .-+.
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 48999999999999999998888888876 4443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.5e-10 Score=103.68 Aligned_cols=386 Identities=12% Similarity=0.037 Sum_probs=266.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhc------CC-
Q 011472 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEK------LK- 150 (485)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~- 150 (485)
++.-|+....-+...+.-.|+++.|..++..-.-.+ .+.........++.+.+++++|..++...... .+
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~---~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK---RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 344666666677888888888988888777654332 45556666678888999999999999843111 00
Q ss_pred C--------hH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----------------------------
Q 011472 151 L--------PS-----------VYIALLNAYACAKSAEKAEIIMQQMRDRGL---------------------------- 183 (485)
Q Consensus 151 ~--------~~-----------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------------------------- 183 (485)
+ .. .+-.-...|....+.++|...|.+.....+
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 0 00 000000112223333444333332221110
Q ss_pred ----------------------------------------CCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc
Q 011472 184 ----------------------------------------VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY 223 (485)
Q Consensus 184 ----------------------------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 223 (485)
.-+.........-+...+++.+..++.+...+. .++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcc
Confidence 011111222233344556677777777777665 344555
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ 303 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (485)
.+..-|.++...|+..+-..+=.++. + ..+....+|-++..-|...|+.++|.+.|.+.... .+.-...|-.+...
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV-~-~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghs 355 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLV-D-LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHS 355 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHH-H-hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHH
Confidence 66666777888888777777777776 4 33355677888888888889999999999887665 45555789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHH
Q 011472 304 YAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383 (485)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 383 (485)
|...|..++|+..+....+-.+-...-+-.+.--|.+.++.+.|.++|.+.....+. |+.+.+-+.-...+.+.+.+|.
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHH
Confidence 999999999999888655544444444555677788899999999999999876443 7788888888888889999999
Q ss_pred HHHHHHHHc--CCCC----cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHH
Q 011472 384 TLIYKAQLR--GTEP----NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGA 457 (485)
Q Consensus 384 ~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 457 (485)
.+|+..+.. .+.+ -..+++.|..+|.+.+.+++|+..+++.+. -.+-|..++.++.-.+...|+++.|
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~------l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL------LSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH------cCCCchhHHHHHHHHHHHhcChHHH
Confidence 999987631 0111 245688899999999999999999999997 4556889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHH
Q 011472 458 DYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~l 478 (485)
.+.|.+..-..|.+..+-..|
T Consensus 509 id~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 509 IDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHhcCCccHHHHHHH
Confidence 999999998887665443333
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.8e-11 Score=102.19 Aligned_cols=269 Identities=13% Similarity=0.114 Sum_probs=201.4
Q ss_pred HcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCChHH
Q 011472 199 QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW--TVYATAASGYVKAGLSDK 276 (485)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 276 (485)
-.++.++|.+.|-+|.+.... +..+--+|.+.|.+.|..+.|+++.+.+....+.+.+. ...-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357899999999999985222 34455678899999999999999999998454443332 234567788999999999
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCCc----ccHHHHHHHHHhcCCHHHHHHHH
Q 011472 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYK-QNLKVYN----RGYICVISSLLKFDGMESAEKIF 351 (485)
Q Consensus 277 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 351 (485)
|+.+|..+.+.+...+ .+...|+..|-...+|++|+++-+.+. .+..+.. ..|.-+...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~efa~--~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEFAE--GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999988643443 688899999999999999999988543 3332222 24666677777788999999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccC
Q 011472 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAG 431 (485)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 431 (485)
.+..+...+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---- 278 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---- 278 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----
Confidence 999987554 666667788899999999999999999999764444778889999999999999999999999873
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 432 TRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 432 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
.+....-..+...-....-.+.|...+.+-.... |+...+..|+
T Consensus 279 ---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-Pt~~gf~rl~ 322 (389)
T COG2956 279 ---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRK-PTMRGFHRLM 322 (389)
T ss_pred ---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC-CcHHHHHHHH
Confidence 3333344444443334444555665555544433 4555566665
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=4.5e-11 Score=116.88 Aligned_cols=250 Identities=9% Similarity=-0.113 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 133 QGIEQAASYFNCVPEKLKL-PSVYIALLNAYA---------CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 133 ~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
+.+++|...|++..+..|+ ...|..+..+|. ..+++++|...+++..+.+.. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3456777777777777665 344555544433 223467777777777776543 56667777777777778
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLR 282 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 282 (485)
+++|...|++..+.+.. +...+..+..++...|++++|...+++.. +.++. +...+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECL-KLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888877775321 34456666777777788888888887777 44432 22222333444556777788888777
Q ss_pred HHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q 011472 283 KSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN-LCH 361 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~ 361 (485)
++.... ++.+...+..+..++...|+.++|...++.+....+.+....+.+...+...| +.|...++.+.+.- ..+
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 766542 22233456667777777888888888777654444444444555555566666 36666566555431 112
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
....+ +-..|.-.|+.+.+... +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222 44445556666666655 776654
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=2.7e-11 Score=105.50 Aligned_cols=202 Identities=16% Similarity=0.060 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
....+..+...+...|++++|.+.+++.... .+.+...+..+...+...|++++|.+.++......+.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3455666777777778888888777777665 34445677777777777788888888777655555555566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHH
Q 011472 337 SLLKFDGMESAEKIFEEWESRNLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSE 415 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 415 (485)
.+...|++++|...++...+....+ ....+..+...+...|++++|...+++..+... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 7788888888888888877642222 234566677788888888888888888877532 23567777888888888888
Q ss_pred HHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 416 KGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
+|.+.++++.+ ..+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 187 ~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQ------TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888888886 22345566667777788888888888887777654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=3.6e-11 Score=104.74 Aligned_cols=198 Identities=14% Similarity=0.047 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
..+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 44555555555666666666666655544311 344455555555555666666666655554422 1233444455555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
...|++++|.+.+++.............+..+..++...|++++|...+++.... .+.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 5556666666655555511111122334444555555555555555555555544 22223344445555555555555
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 354 (485)
|...++......+.+...+..++..+...|+.+.|..+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555332222233333334444444444444444444443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=3.1e-09 Score=98.08 Aligned_cols=439 Identities=11% Similarity=0.062 Sum_probs=248.3
Q ss_pred chhhhhhhhhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCH
Q 011472 4 VRLRTTLYNIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDM 83 (485)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (485)
.|+. +..+--.+.++++-..++.|+++...-+..-. ..-|.-.+.-+...+-+.. ..+++++..+ .++
T Consensus 102 pRIw--l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH-----~rIW~lyl~Fv~~~~lPet-s~rvyrRYLk----~~P 169 (835)
T KOG2047|consen 102 PRIW--LDYLQFLIKQGLITRTRRTFDRALRALPVTQH-----DRIWDLYLKFVESHGLPET-SIRVYRRYLK----VAP 169 (835)
T ss_pred CHHH--HHHHHHHHhcchHHHHHHHHHHHHHhCchHhh-----ccchHHHHHHHHhCCChHH-HHHHHHHHHh----cCH
Confidence 4444 34444556677788888899888766655442 2335556666666555544 6668777774 455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHhhCCH---HHHHHHHHhhhhcCCCh--H
Q 011472 84 EQLRIIIKKFRLYKRFSHALQISMWMTKKSNF-----VLTPADVAIRLDLIAKVQGI---EQAASYFNCVPEKLKLP--S 153 (485)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~--~ 153 (485)
..-+..|..++..+++++|.+.+.....+..+ +-+-..+..+-+..++.-+. -....+++......+|. .
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~ 249 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGF 249 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHH
Confidence 56788899999999999999999988765411 11122223333333332221 22344555555555664 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC----------------------ChhhHHHHHH
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG----------------------NYKKLDSLMH 211 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~ 211 (485)
.|+.|.+.|.+.|.+++|.++|++....- .++.-|..+.++|++.. +++-.+..|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 68999999999999999999999877642 24444555555554321 1223333444
Q ss_pred HHHHcCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHhcCCh
Q 011472 212 EMEEKGI-----------DCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLD------WTVYATAASGYVKAGLS 274 (485)
Q Consensus 212 ~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 274 (485)
.+...+. +-++..|..-+. ...|+..+-...|.++... +.|. ...|..+.+.|-..|++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 4443321 111122222221 2345666667777776622 2221 24566777888888888
Q ss_pred HHHHHHHHHHHHhhccC--CcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------------------CCcccHHHH
Q 011472 275 DKALAVLRKSEVLMMHN--KFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK------------------VYNRGYICV 334 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~l 334 (485)
+.|..+|++..+..... .-..+|......-.+..+++.|+++.+....-.. -+...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 88888888876652111 1124667777777777888888887774321111 122356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhc---
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQ--- 410 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~--- 410 (485)
++.....|-++....+|+.+.+..+. ++.+.-.....+-...-++++.+++++-+..-..|+ ...|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 77777777778777888777765443 222211122222233445666666665544322344 2345554444433
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH--HHHHhcCCHhHHHHHHHHHhcC
Q 011472 411 NNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL--GYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
....+.|..+|+++++ +.+|...-+..|+ ..--+.|....|+.++++....
T Consensus 563 g~klEraRdLFEqaL~------~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD------GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 2246666666666665 5555443322222 2223456666666666665443
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=8.2e-12 Score=105.42 Aligned_cols=232 Identities=11% Similarity=0.014 Sum_probs=200.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 226 SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 226 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
+.+.++|.+.|-+.+|.+.|+... + -.|-+.||..|-+.|.+..+++.|+.++.+-.+. .|.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL-~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL-T--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh-h--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 567889999999999999999888 3 2356667778999999999999999999998877 6667556667788888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 385 (485)
..++.++|.++|+...+..+.++.....+...|.-.++.+.|..+|+++.+.|.. ++..|+.+.-+|.-.+++|-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999888888888888888889999999999999999999999987 888999999899999999999999
Q ss_pred HHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011472 386 IYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKL 463 (485)
Q Consensus 386 ~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (485)
|++....--.|+ ...|-.+.......|++..|.+.|+-++. .-..+...++.|.-.-.+.|++++|..++..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~------~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT------SDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc------cCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999887655555 56788888888889999999999999986 4445668899988888999999999999999
Q ss_pred HhcCCC
Q 011472 464 LTGKEI 469 (485)
Q Consensus 464 ~~~~~~ 469 (485)
.....|
T Consensus 455 A~s~~P 460 (478)
T KOG1129|consen 455 AKSVMP 460 (478)
T ss_pred hhhhCc
Confidence 888776
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=3.2e-11 Score=117.92 Aligned_cols=266 Identities=12% Similarity=-0.006 Sum_probs=188.3
Q ss_pred CChHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH---------cCChhhHHHHHHHHHH
Q 011472 150 KLPSVYIALLNAYA-----CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ---------TGNYKKLDSLMHEMEE 215 (485)
Q Consensus 150 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 215 (485)
.+...|...+.+-. ..+++++|+..|++..+.... +...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44565666655532 135689999999999887533 45566666665542 2447899999999998
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcch
Q 011472 216 KGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR 295 (485)
Q Consensus 216 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 295 (485)
.+.. +...+..+...+...|++++|...|++.. +.++ .+...+..+...+...|++++|+..+++..+.. |.+..
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQAN-LLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 6432 55677778888899999999999999998 5554 557778889999999999999999999998873 33334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKV-YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC 374 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (485)
.+..++..+...|++++|...++......+| +...+..+..++...|+.++|...+.++..... .+....+.+...|+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHh
Confidence 4445555677789999999999966554444 444577788889999999999999998765422 13344566666777
Q ss_pred HcCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 375 RRGLLHKAETLIYKAQLRG-TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
..| ++|...++.+.+.. ..|....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777 57888777776431 22332333 33345556666666555 777664
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.3e-09 Score=96.30 Aligned_cols=414 Identities=9% Similarity=0.006 Sum_probs=214.0
Q ss_pred HHHHHhhcCCCCCCC--CHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHH-HHHHH
Q 011472 51 YKLYRMLSPMGDPND--SMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV-AIRLD 127 (485)
Q Consensus 51 ~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~ 127 (485)
..++..+-+.+...+ .+......+...+ +-+...+..=+-++.+.+.|++|+.+.+.-.... ....+ .--.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHH
Confidence 455555555544443 1222334444433 5566666666667777778887774433322110 01111 11122
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc-CChhhH
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT-GNYKKL 206 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a 206 (485)
+..+.++.++|...++.+.. .+..+-..-...+-+.|++++|+.+|+.+.+.+. ..+...+++-+.. +....+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHhhhH
Confidence 33467778888777773332 1223334444556677888888888888766532 2222222221110 000000
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHH---HHHhcCChHHHHHHHHHHHh-------cCCC-----CCCHHH-HHHHHHHHHh
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLS---ACAAASDGEGIDKIVAMMEA-------DRGV-----VLDWTV-YATAASGYVK 270 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~-------~~~~-----~~~~~~-~~~l~~~~~~ 270 (485)
. .+......| ..+|..+-+ .+...|++.+|+++++.... +... .....+ --.|...+..
T Consensus 162 ~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 111111222 234443333 34567777777777777620 1111 011111 1234445566
Q ss_pred cCChHHHHHHHHHHHHhhccCCcchh----HHHHHHHHHhcC----------------CHHHHHH---------------
Q 011472 271 AGLSDKALAVLRKSEVLMMHNKFSRA----YDFVITQYAACG----------------NKDDVLR--------------- 315 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~----------------~~~~a~~--------------- 315 (485)
.|+.++|..++...... .++|... -|.|+..-.... ..+.++.
T Consensus 237 ~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888877777666 2333211 111111000000 0000000
Q ss_pred ---HHH-------HHhhcCCCC--cccHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 316 ---VWK-------RYKQNLKVY--NRGYICVISSLLK--FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 316 ---~~~-------~~~~~~~~~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
+|. ......++. ...+..++..+.+ ......+.+++....+....-...+.-.++......|+++.
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 000 001111211 2234445444432 23467777777777665443234455666777888999999
Q ss_pred HHHHHH--------HHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC-HHHHHHHHHHHHhcC
Q 011472 382 AETLIY--------KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS-KECLAACLGYYKKER 452 (485)
Q Consensus 382 a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 452 (485)
|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+++.-+.....-.+. ..++.-+...-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 5666554444 44556666777777777777777777632211111121 123333344445789
Q ss_pred CHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhc
Q 011472 453 DIEGADYFIKLLTGKEIISADLQDRLL-NNIRN 484 (485)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 484 (485)
+.++|...++++.+.++++.++...++ +|++-
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 99864
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=5e-10 Score=105.85 Aligned_cols=295 Identities=15% Similarity=0.078 Sum_probs=168.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHH-h--
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYA-C-- 164 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~-~-- 164 (485)
.....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+|+...|...+..+. -
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 3345567778888888888765544 2233455555577778888888888888888888777665544443332 1
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh-hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHH
Q 011472 165 ---AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY-KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG 240 (485)
Q Consensus 165 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 240 (485)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 124666777777776653 3444433333333332223 23445556666666652 45555555554444444
Q ss_pred HHHHHHHHHhc---CC----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 241 IDKIVAMMEAD---RG----------VVLDWT--VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 241 a~~~~~~~~~~---~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
..+++...... .+ -+|+.. ++..+...|...|++++|+++.++.... .|..+..|..-...+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 44444444311 00 112222 3344555666667777777777766665 3333456666666666
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH--------HHHHHHHHHcC
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP--------NHLIDAYCRRG 377 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g 377 (485)
+.|++.+|.+.++....-..-|-..-+..+..+.+.|++++|.+++....+.+..|-...+ .....+|.+.|
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777776666666555566666666666666667777776666666555433222221 23345556666
Q ss_pred CHHHHHHHHHHHHH
Q 011472 378 LLHKAETLIYKAQL 391 (485)
Q Consensus 378 ~~~~a~~~~~~m~~ 391 (485)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666655543
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=104.60 Aligned_cols=227 Identities=7% Similarity=-0.016 Sum_probs=107.2
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKK 205 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 205 (485)
..+|.+.|.+.+|.+.|+...+..|-+.+|-.|-++|.+-.+++.|+.+|.+-.+.- +-|+....-+.+.+-..++.++
T Consensus 230 gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHH
Confidence 444555555555555555555555555555555555555555555555555544331 1122222334444455555555
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 206 LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 206 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
|.++|+...+.. +.++.....+...|.-.++++-|+++|+++. +.|+ .+...|+.+.-+|.-.+++|-++.-|.+..
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 555555554431 1123333333344444555555555555555 4455 445555555555555555555555555544
Q ss_pred Hhhc-cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 286 VLMM-HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 286 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
.... +..-...|-.+.......|++..|.+.|+........+...++.|.-.-.+.|++++|..++....+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 4311 1111233444444444444555555544443333344444444444444444444444444444433
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=7.5e-10 Score=104.69 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=172.6
Q ss_pred hcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHh----
Q 011472 57 LSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAK---- 131 (485)
Q Consensus 57 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 131 (485)
+...|+... +..+|+. .+..+......+......+.+.|++++|..+|..+++.+ |+...+... ..+..-
T Consensus 14 l~e~g~~~~-AL~~L~~-~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEE-ALEHLEK-NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHH-HHHHHHh-hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 344555555 3334433 223444555666777788888888888888888888876 333333333 333311
Q ss_pred -hCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHH
Q 011472 132 -VQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAE-KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209 (485)
Q Consensus 132 -~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 209 (485)
....+...++|+++....|...+...+.-.+.....+. .+...+..+..+|+++ +|+.|-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 22566777788877777666554444433333323333 3444555566777553 455565556545555555555
Q ss_pred HHHHHHc----C----------CCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 011472 210 MHEMEEK----G----------IDCDKY--TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273 (485)
Q Consensus 210 ~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (485)
+...... + -+|... ++.-+...|...|++++|+++.++.. +..+ ..+..|..-...|-..|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~htP-t~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EHTP-TLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCC-CcHHHHHHHHHHHHHCCC
Confidence 5555432 1 122222 33445566777888888888888877 4332 336677777788888888
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCccc--------HHHHHHHHHhcCCH
Q 011472 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL-KVYNRG--------YICVISSLLKFDGM 344 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------~~~li~~~~~~~~~ 344 (485)
+.+|.+.++..... ...|...=+-.+..+.+.|+.++|.+++....... .|.... ......+|.+.|++
T Consensus 244 ~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 244 LKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred HHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888887776 55565666677777788888888888888554332 222211 23455677777888
Q ss_pred HHHHHHHHHHH
Q 011472 345 ESAEKIFEEWE 355 (485)
Q Consensus 345 ~~a~~~~~~~~ 355 (485)
..|.+-|..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88877776653
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.3e-09 Score=99.11 Aligned_cols=283 Identities=12% Similarity=0.038 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
...-.-.+-+-..+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+. .+-...+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 334444455666788888888888888763 345666666677788888888877777777775 333566888887777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
.-.|+..+|.++|.+.. ..+. .=...|-.....|.-.|..|.|+..+...-+. .+....-+--+.--|.+.++.+.
T Consensus 323 l~i~k~seARry~SKat-~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKAT-TLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHh-hcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 77888889999888876 3222 22446777888888888888888888887766 22222334445556778888888
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----CcccHHHHHHHHHHcCCHHHHHHHH
Q 011472 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN--LCH----DIRIPNHLIDAYCRRGLLHKAETLI 386 (485)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 386 (485)
|.+.|.......|.|+...+-+.-.....+.+.+|..+|+..+..- ..+ -..+++.|..+|.+.+++++|+..+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 8888888888888888888888888888888888888888876221 111 2335778888899999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHH
Q 011472 387 YKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYK 449 (485)
Q Consensus 387 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 449 (485)
++.+.... -|..++.++.-.|...|+++.|.+.|.+++ .+.||..+-..++..+.
T Consensus 479 q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL-------~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL-------ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH-------hcCCccHHHHHHHHHHH
Confidence 98887643 378888888888888999999999999888 66888777766665443
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=2.8e-11 Score=115.11 Aligned_cols=272 Identities=11% Similarity=0.042 Sum_probs=134.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhc
Q 011472 69 PLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEK 148 (485)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 148 (485)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-.. .+.....+..++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 46778888999999999999999999999999888 888887655 4555555555555555555555444
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH-cCCCCCcchHHH
Q 011472 149 LKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE-KGIDCDKYTFSI 227 (485)
Q Consensus 149 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ 227 (485)
.|...+|..|..+|.+.||+.. |+...+ -.-.+...+...|--..-..++..+.- .+.-||.. +
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 1555666666666666666544 221111 011122223333433333333332211 11222322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC 307 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (485)
.+......|-++.+.+++..+.......|... .+.-+... .....++....... ...++..+|.+++++-...
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl-~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSL-VEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHh-hcCCChHHHHHHHHHHHhc
Confidence 22333344445555555544431111111111 12111111 11122222222111 1234445555555555555
Q ss_pred CCHHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc
Q 011472 308 GNKDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR 376 (485)
Q Consensus 308 ~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (485)
|+.+.|..++. |...|.+.+..-|-.++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 55555555555 3334444444444444433 455555555555555555555555555555444443
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=9.6e-13 Score=82.58 Aligned_cols=49 Identities=29% Similarity=0.665 Sum_probs=25.6
Q ss_pred CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 011472 185 KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233 (485)
Q Consensus 185 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 233 (485)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-08 Score=88.47 Aligned_cols=279 Identities=10% Similarity=0.002 Sum_probs=180.2
Q ss_pred CCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 011472 183 LVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY-TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVY 261 (485)
Q Consensus 183 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 261 (485)
++-|++....+...+...|+.++|+..|++.... .|+.. ......-.+...|+.+....+...+. ... .-....|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf-~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF-AKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH-hhh-hcchhhh
Confidence 3446667777777888888888888888777653 33322 11122223456677776666666665 211 1222333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
-.-.......++++.|+.+-++..+. .+.+...+-.-...+...+++++|.-.|+....--|-+...|.-|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 33344455667777777777777665 4455566666666777778888887777766665566677788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLI-DAYCR-RGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 418 (485)
|++.+|.-.-....+. +.-+..+.+.+. ..+.- ...-++|.+++++-.. +.|+ ....+.+...+...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHH
Confidence 8877777666555443 222444444332 22222 1224667777777665 3466 445566667788888888888
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHH
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDR 477 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 477 (485)
.++++.+. ..||....+.|.+.+...+.+++|.+.|......+|.+..+..-
T Consensus 459 ~LLe~~L~-------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 459 KLLEKHLI-------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHHHHh-------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 88888874 47888888888888888888888888888888888776665443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=2.8e-08 Score=92.13 Aligned_cols=363 Identities=14% Similarity=0.077 Sum_probs=195.8
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC-CChHHHHHHHHHHHhcCCHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL-KLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
..+++...+.+.+.+.+. ++-.+++.....-.+...|+-++|....+.-...+ .+.++|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 455666666666666663 34455555555555566666666666666655543 345566666666666666777777
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011472 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRG 253 (485)
Q Consensus 174 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 253 (485)
.|......+.. |...|.-+.-.-++.++++.....-.++.+... -....|..+..++.-.|+...|..+.+.......
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77666655433 445555555555556666665555555554311 1233455555555566666666666666552222
Q ss_pred CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 011472 254 VVLDWTVYATAA------SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY 327 (485)
Q Consensus 254 ~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (485)
..|+...|.... ......|.+++|.+.+..-... ..+....-..-...+.+.+++++|..+|..+....|.+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 234444442222 1223445555555555554433 12222223334445556666666666666554444433
Q ss_pred cccHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 011472 328 NRGYICVISSLLKFDGM-----------------------------------ESAEKIFEEWESRNLCHDIRIPNHLIDA 372 (485)
Q Consensus 328 ~~~~~~li~~~~~~~~~-----------------------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (485)
...|..+..++.+..+. +....++....+.|++ .++..+...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHH
Confidence 33333333333322222 2223333344444443 233334433
Q ss_pred HHHcCCHHHHHHHHHHHHH----cC----------CCCcHHHHH--HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc
Q 011472 373 YCRRGLLHKAETLIYKAQL----RG----------TEPNVRTWY--LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP 436 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~----~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p 436 (485)
|-.-...+-..++.-.+.. .| -+|....|+ .++..|-..|+++.|..+++.+++ ..|
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-------HTP 402 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-------HTP 402 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-------cCc
Confidence 3322222211222222211 11 135554444 566778899999999999999984 466
Q ss_pred CH-HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 437 SK-ECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 437 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
+. ..|..=.+.+.+.|++++|..++++..+.+.+|..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 55 44555567899999999999999999988865544
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2e-12 Score=81.14 Aligned_cols=50 Identities=28% Similarity=0.544 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 361 HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777776653
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=1.5e-09 Score=101.42 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=150.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHh-----hccCC-
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEAD----RG-VVLDWTVY-ATAASGYVKAGLSDKALAVLRKSEVL-----MMHNK- 292 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~- 292 (485)
...+...|...|+++.|+.+++..... .| ..|...+. +.+...|...+++++|..+|+++... |...|
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444455555555555444444311 11 11232222 23556666677777777777766554 22222
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHHHHH---hhc----CCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC
Q 011472 293 FSRAYDFVITQYAACGNKDDVLRVWKRY---KQN----LKVYN-RGYICVISSLLKFDGMESAEKIFEEWESR---NLCH 361 (485)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~----~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~ 361 (485)
-..+++.|..+|.+.|++++|...++.. ... ..|.. ..++.++..|+..+++++|..+++...+. -+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2345666666777777777776666621 111 11221 23556677778888888888887766532 1222
Q ss_pred C----cccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC--CCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhcc
Q 011472 362 D----IRIPNHLIDAYCRRGLLHKAETLIYKAQLR----GT--EPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEA 430 (485)
Q Consensus 362 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 430 (485)
+ ..+++.|...|.+.|++++|..++++.+.. +. .+. ...++.+...|.+.+++++|.++|.+...-...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 346888999999999999999999988642 11 122 456788888999999999999999887764211
Q ss_pred CCCCccC-HHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 431 GTRWKPS-KECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 431 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
...-.|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1112233 3788999999999999999999988765
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=7.3e-11 Score=112.32 Aligned_cols=243 Identities=16% Similarity=0.129 Sum_probs=121.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 011472 150 KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229 (485)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 229 (485)
|+-.+|..+|.-|+..|+.+.|- +|.-|.-...+-+...|+.++.+....++.+.+. .|-..||..|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLL 90 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHH
Confidence 66666777776677667666666 6666665555555666666666666666655554 45666777777
Q ss_pred HHHHhcCChHH---HHHHHHHHHh---cCCCCCCHHHHHHH--------------HHHHHhcCChHHHHHHHHHHHHhhc
Q 011472 230 SACAAASDGEG---IDKIVAMMEA---DRGVVLDWTVYATA--------------ASGYVKAGLSDKALAVLRKSEVLMM 289 (485)
Q Consensus 230 ~~~~~~g~~~~---a~~~~~~~~~---~~~~~~~~~~~~~l--------------~~~~~~~g~~~~A~~~~~~~~~~~~ 289 (485)
.+|...||+.. ..+.+..+.. ..|+.....-+-.. +......|.++.+++++..+.....
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 77777776543 1111111110 12221111110000 1111112222222222222211100
Q ss_pred cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 011472 290 HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK-VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNH 368 (485)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (485)
..| +..+++-+ .-.+....++..+.+.... |++.+|..++.+..-.|+++.|..++.+|.+.|++.+..-|-.
T Consensus 171 ~~p----~~vfLrqn--v~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 171 NAP----FQVFLRQN--VVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cch----HHHHHHHh--ccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 000 00011111 1122334444444433333 6666666666666666666666666666666666666655555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
|+-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 5444 55666666666666666666666666666555555443
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=5.9e-08 Score=89.90 Aligned_cols=401 Identities=12% Similarity=0.092 Sum_probs=256.0
Q ss_pred hHHHHHhhcCCCCCCCCHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 011472 50 MYKLYRMLSPMGDPNDSMVPLLDQWVE-EGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDL 128 (485)
Q Consensus 50 ~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (485)
|-..++.+.+.|+... ....|+.-.. ..+.-....|...+......+-++.++.++++.++ .+|....-.+..
T Consensus 105 wl~Ylq~l~~Q~~iT~-tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITR-TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHhcchHHH-HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHH
Confidence 3444455555555554 4455554443 34555666788888888888888899999998877 467777788899
Q ss_pred HHhhCCHHHHHHHHHhhhhc-------CC-ChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCc--chHHHHHH
Q 011472 129 IAKVQGIEQAASYFNCVPEK-------LK-LPSVYIALLNAYACAKSAE---KAEIIMQQMRDRGLVKKT--IDYNSMMN 195 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~-------~~-~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~--~~~~~l~~ 195 (485)
+++.+++++|.+.+..+... ++ +...|..+-+..++.-+.- ....++..+..+ -+|. ..|++|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999999887654 22 3456777766666543322 223344444332 2343 46899999
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc----------------C------ChHHHHHHHHHHHhcCC
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA----------------S------DGEGIDKIVAMMEADRG 253 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g------~~~~a~~~~~~~~~~~~ 253 (485)
.|.+.|.+++|.++|++.++.- .+..-|+.+.++|+.- | +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999988752 2344455555554431 1 23334444555542211
Q ss_pred CC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccC----CcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 254 VV----------LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN----KFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 254 ~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
.- -++..|..-+. +..|+..+-...|.++...-.+. .-...|..+.+.|-+.|+.+.|..+|+.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11 12222222222 23567788888888887762111 1125688999999999999999999995
Q ss_pred HhhcCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------------CcccHHHHHHHHHHcCC
Q 011472 320 YKQNLKVY----NRGYICVISSLLKFDGMESAEKIFEEWESRNLCH-----------------DIRIPNHLIDAYCRRGL 378 (485)
Q Consensus 320 ~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~g~ 378 (485)
.....-+. ..+|..-...-.+..+++.|.++++......-.| +..+|..+++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 43322222 2345555555556778889999888776431111 12345556666667789
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCc-cCH-HHHHHHHHHHHh---cCC
Q 011472 379 LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWK-PSK-ECLAACLGYYKK---ERD 453 (485)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-p~~-~~~~~l~~~~~~---~g~ 453 (485)
++....+++++.+..+. ++.........+-.+.-++++.++|++-+.. ++ |+. ..|+..+.-+.+ .-.
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L------Fk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL------FKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc------CCCccHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999987765 3333333333445666788999999988763 33 333 567776655543 346
Q ss_pred HhHHHHHHHHHhcCCC
Q 011472 454 IEGADYFIKLLTGKEI 469 (485)
Q Consensus 454 ~~~a~~~~~~~~~~~~ 469 (485)
.+.|..+|++..+.-|
T Consensus 566 lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999999444
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=3.2e-09 Score=95.14 Aligned_cols=230 Identities=10% Similarity=-0.103 Sum_probs=139.9
Q ss_pred HcCChhhHHHHHHHHHHcC-CCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 011472 199 QTGNYKKLDSLMHEMEEKG-IDCD--KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275 (485)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (485)
..+..+.++..+.+++... ..|+ ...|..+...+...|+.+.|...|++.. +..+ .+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL-ALRP-DMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHCCCHH
Confidence 3456677777777777542 2222 2346666667778888888888888877 5443 45677788888888888888
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
+|...|++..+. .|.+..+|..+..++...|++++|++.|+......+.+.. .......+...++.++|...+.+..
T Consensus 116 ~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888887765 4445567777777788888888888888855444333331 1122222344567778887776654
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 011472 356 SRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG-----TEP-NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLE 429 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 429 (485)
... .|+...+ .......|+.+++ ..++.+.+.. +.| ....|..+...+.+.|++++|+..|+++++
T Consensus 193 ~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--- 264 (296)
T PRK11189 193 EKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--- 264 (296)
T ss_pred hhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 332 2222221 2223334555444 3444444211 011 135677777777888888888888888776
Q ss_pred cCCCCccCHHHHHHH
Q 011472 430 AGTRWKPSKECLAAC 444 (485)
Q Consensus 430 ~~~~~~p~~~~~~~l 444 (485)
.-.||...+...
T Consensus 265 ---~~~~~~~e~~~~ 276 (296)
T PRK11189 265 ---NNVYNFVEHRYA 276 (296)
T ss_pred ---hCCchHHHHHHH
Confidence 333455444443
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=2.2e-07 Score=86.38 Aligned_cols=376 Identities=12% Similarity=0.048 Sum_probs=237.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHH
Q 011472 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYI 156 (485)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 156 (485)
+.+-...+.....-.+...|+-++|.+......+.. .-++..+.++.-.+...+++++|.+.|......+|| ...|.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 445555555555555666788888888888777754 345556666666666778888888888888877765 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCCcchHHHHH------
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG-IDCDKYTFSILL------ 229 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll------ 229 (485)
-+.-.-++.++++.....-.++.+.... ....|..++.++.-.|++..|..++++..+.. -.|+...+.-..
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n 192 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN 192 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 6666667778888777777777665322 44567777777778888888888888887663 234544443322
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVY-ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
....+.|..+.|.+.+..-. . .+ .|...+ -.-...+.+.+++++|..++..+... .|++...|-.+..++.+..
T Consensus 193 ~i~~E~g~~q~ale~L~~~e-~-~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNE-K-QI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHcccHHHHHHHHHhhh-h-HH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHh
Confidence 23455677777777666654 1 22 333333 34566677888888888888888776 4555445555555554333
Q ss_pred CHHHHH-HHHHHHhhcCC----C--------C--------------------cccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 309 NKDDVL-RVWKRYKQNLK----V--------Y--------------------NRGYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 309 ~~~~a~-~~~~~~~~~~~----~--------~--------------------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
+..+++ .+|.......+ | + +.++..+...+-.....+-.+++.-.+.
T Consensus 268 d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred hhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 333333 44443322211 0 0 1122223332222222221122222221
Q ss_pred h----cCC----------CCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHH
Q 011472 356 S----RNL----------CHDIRIP--NHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 356 ~----~~~----------~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 418 (485)
. .|. +|....| --++..|-+.|+++.|...++...+. .|+ +..|..-...+...|++++|.
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHH
Confidence 1 111 3343334 35677888899999999999999984 465 556666668899999999999
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.+++++.+ --.||...-..-..-..++.+.++|.++.....+.|.
T Consensus 426 ~~l~ea~e------lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 426 AWLDEAQE------LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHh------ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99999987 3456655554666677789999999999998888774
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=4e-09 Score=94.53 Aligned_cols=221 Identities=11% Similarity=-0.015 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCh----hHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTP----ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKA 171 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 171 (485)
+..+.++.-+.+++... +.++ ..+......+.+.|++++|...|++..+..|+ ...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555666666666543 1222 23444455666677777777777777666654 56677777777777777777
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011472 172 EIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEAD 251 (485)
Q Consensus 172 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 251 (485)
...|++..+.... +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+.. .
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-~ 193 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY-E 193 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH-h
Confidence 7777777665433 4456666666677777777777777777664 3333222222223344566777777775544 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc-----cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 011472 252 RGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM-----HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKV 326 (485)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (485)
.. .++...+ .......|+..++ +.+..+..... .+....+|..+...+.+.|++++|...|+......+|
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 11 1221111 1222234444333 23333332100 1112245666666666666666666666655554444
Q ss_pred Cc
Q 011472 327 YN 328 (485)
Q Consensus 327 ~~ 328 (485)
+.
T Consensus 269 ~~ 270 (296)
T PRK11189 269 NF 270 (296)
T ss_pred hH
Confidence 43
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.7e-08 Score=88.44 Aligned_cols=276 Identities=14% Similarity=0.008 Sum_probs=206.4
Q ss_pred HHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 011472 141 YFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID 219 (485)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 219 (485)
++-+.....| ++.....+.+++...|+.++|+..|++....++. +......-...+.+.|+++....+...+.... +
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~ 297 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-K 297 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-h
Confidence 3333333344 4677888999999999999999999998776322 22222223334567899999988888887642 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHH
Q 011472 220 CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDF 299 (485)
Q Consensus 220 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 299 (485)
-+...|..-........+++.|+.+-++.. +.+. -+...|-.-...+...|+.++|.-.|+..... .|.+...|.-
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I-~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~G 373 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCI-DSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRG 373 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHh-ccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHH
Confidence 233344444444556778899999888887 5443 45566666667788899999999999998876 5667789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHc
Q 011472 300 VITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVI-SSLL-KFDGMESAEKIFEEWESRNLCHD-IRIPNHLIDAYCRR 376 (485)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 376 (485)
|+.+|...|++.+|...-+......+.+..+.+.+. ..|. ...--++|.++++..... .|+ ....+.+...+...
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhh
Confidence 999999999999999888865555666666666663 3333 233457888888887664 344 23466778888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 377 GLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|..+.+..++++... ..||....+.|.+.+...+.+++|++.|..++.
T Consensus 452 g~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999887 469999999999999999999999999999995
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=1.2e-08 Score=82.72 Aligned_cols=204 Identities=15% Similarity=0.019 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLL 339 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 339 (485)
+...|.-.|...|+...|..-+++..+. .|.+..+|..+...|.+.|+.+.|.+.|+......+-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 4455777888888888888888888887 56666788888888888888888888888777777777788888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHH
Q 011472 340 KFDGMESAEKIFEEWESRNLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKG 417 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 417 (485)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.. |+ ..+.-.+.......|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 8888888888888887652222 23567777777788888899999888888754 44 56667777888888888888
Q ss_pred HHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 418 VEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
..+++.... +..++...+...|+.-...||.+.+-+.=..+....|-+++
T Consensus 193 r~~~~~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 193 RLYLERYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 888888876 55588888888888888888888888777777766664443
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=3.3e-09 Score=99.19 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=120.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCChhHHH---HHHHHHHhhCCHHHHHHHHHhhhhc---
Q 011472 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK---SNFVLTPADVA---IRLDLIAKVQGIEQAASYFNCVPEK--- 148 (485)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~--- 148 (485)
+.|--..+...+...|...|+++.|..++++..+. +.....+.... .+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444456666788888888888888888777654 00001111111 1233445555555555555554333
Q ss_pred --CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcC-CCCC
Q 011472 149 --LKL----PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG-IDCD 221 (485)
Q Consensus 149 --~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 221 (485)
|++ ..+++.|..+|.+.|++++|...+++..+. +++ ..| ..|.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~ 323 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPE 323 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHH
Confidence 111 123444455555555555555554443221 000 001 1111
Q ss_pred cc-hHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh-----c
Q 011472 222 KY-TFSILLSACAAASDGEGIDKIVAMMEAD----RGV-V-LDWTVYATAASGYVKAGLSDKALAVLRKSEVLM-----M 289 (485)
Q Consensus 222 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 289 (485)
+. .++.+...+...++++.|..+++...+. .|. . .-..+++.|...|...|++++|.++++++.... .
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 11 2333344444445555544444433211 111 0 112355666666666666666666666655441 0
Q ss_pred -cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 290 -HNKFSRAYDFVITQYAACGNKDDVLRVWKRYK---QNLKVY----NRGYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 290 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
.......++.|...|.+.+++++|.++|.... ..+.|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11113455666666666666666666665211 222222 2456666667777777777776666655
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=5.7e-08 Score=90.50 Aligned_cols=310 Identities=10% Similarity=-0.020 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCc-chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLV-KKT-IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS 230 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 230 (485)
..|..+...+...|+.+.+.+.+.+..+.... ++. .........+...|++++|.+.+++..+... .|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hH
Confidence 34555555555566666665555554433211 111 1111223334566777777777777666421 12223221 11
Q ss_pred HHH----hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHh
Q 011472 231 ACA----AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAA 306 (485)
Q Consensus 231 ~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (485)
.+. ..+..+.+.+.+... ....+........+...+...|++++|...+++.... .+.+...+..+...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 222 233444444444432 2222233344445566777777788888888777776 44445667777777777
Q ss_pred cCCHHHHHHHHHHHhhcCC--CCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccH-H--HHHHHHHHcCC
Q 011472 307 CGNKDDVLRVWKRYKQNLK--VYN--RGYICVISSLLKFDGMESAEKIFEEWESRNLCHD-IRIP-N--HLIDAYCRRGL 378 (485)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~ 378 (485)
.|++++|...++......+ |+. ..|..+...+...|++++|..++++.......+. .... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 7888888877775444332 221 2344567777788888888888887754322111 1111 1 22233333443
Q ss_pred HHHHHHH--H-HHHHHcCC-CCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccC--CCCc-cCHHHHHHHHHHHHhc
Q 011472 379 LHKAETL--I-YKAQLRGT-EPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAG--TRWK-PSKECLAACLGYYKKE 451 (485)
Q Consensus 379 ~~~a~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~-p~~~~~~~l~~~~~~~ 451 (485)
.+.+.+. + ..-..... ............++...|+.+.|...++.+....... .+.. ...........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3332222 1 11111100 0111222245566778888888888888877631110 0000 0112222223345688
Q ss_pred CCHhHHHHHHHHHhcCC
Q 011472 452 RDIEGADYFIKLLTGKE 468 (485)
Q Consensus 452 g~~~~a~~~~~~~~~~~ 468 (485)
|+.++|.+.+.......
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999988888776543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=1.1e-08 Score=82.94 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=110.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
...|.-.|.+.|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 444555566666666666666666655433 4455566666666666666666666666554222 34455555555566
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHH
Q 011472 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (485)
.|++++|...|++.........-..+|..+.-+..+.|+.+.|.+.|++..+. .+....+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666665544444334445555555566666666666666666555 2333345555555555566666665
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 315 RVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
..++.......++..+.-..|+.-...|+.+.+.+.=..+.+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555554444445555555555555555555555554444443
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=4.2e-07 Score=86.27 Aligned_cols=381 Identities=12% Similarity=-0.074 Sum_probs=231.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--
Q 011472 72 DQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL-- 149 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 149 (485)
.++....+..+...|..+.-++...|++..+.+.|++....- -...+.+......+...|.-..|..+++......
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 344445667788899999999999999999999999887643 1344566666677778888888999988866554
Q ss_pred C-ChHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHHcC-----------ChhhHHHHHHH
Q 011472 150 K-LPSVYIALLNAYA-CAKSAEKAEIIMQQMRDR--GL--VKKTIDYNSMMNVYYQTG-----------NYKKLDSLMHE 212 (485)
Q Consensus 150 ~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~ 212 (485)
| ++..+-..-..|. +.+.+++++..-.+.... +. ......|..+.-+|...- ...++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 3 3344443334444 356677777766666541 11 113344555555554321 24567788888
Q ss_pred HHHcCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 011472 213 MEEKGI-DCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN 291 (485)
Q Consensus 213 m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 291 (485)
..+.+. .|+...| +.--|+-.++++.|....++.. +.+...+...|..+.-.+...+++.+|+.+.+..... .+
T Consensus 470 av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~ 544 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FG 544 (799)
T ss_pred HHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hh
Confidence 877643 3333333 3345677889999999999998 7666678888888888899999999999998887665 22
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHHHH----------------------hhc--------------------------
Q 011472 292 KFSRAYDFVITQYAACGNKDDVLRVWKRY----------------------KQN-------------------------- 323 (485)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------~~~-------------------------- 323 (485)
.|......-+..-...++.++++.....+ +.+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 21111111111111222333222221100 000
Q ss_pred -------------CCCCc--------ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHH
Q 011472 324 -------------LKVYN--------RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKA 382 (485)
Q Consensus 324 -------------~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 382 (485)
..|.. ..|......+.+.+..++|.-.+.+..... ......|......+...|...+|
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHH
Confidence 00111 113344445555666666665555555432 22444555555666666777777
Q ss_pred HHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHH--HHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHH
Q 011472 383 ETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVE--AMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY 459 (485)
Q Consensus 383 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 459 (485)
.+.|..... +.|+ +....++...+.+.|+..-|.. ++.++++ --+-+...|..+...+.+.|+.++|.+
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr------~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR------LDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 777777666 3354 5566677777777777666666 7777775 223366777777777777777777777
Q ss_pred HHHHHhcCC
Q 011472 460 FIKLLTGKE 468 (485)
Q Consensus 460 ~~~~~~~~~ 468 (485)
.|....+..
T Consensus 776 cf~aa~qLe 784 (799)
T KOG4162|consen 776 CFQAALQLE 784 (799)
T ss_pred HHHHHHhhc
Confidence 777665544
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=9.6e-07 Score=76.26 Aligned_cols=352 Identities=14% Similarity=0.062 Sum_probs=188.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhc---
Q 011472 89 IIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACA--- 165 (485)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 165 (485)
+...+.+.|++++|+..+..+.... ..+......+.-+..-.|.+.+|..+-.+.++. +-.-..|++.-.+.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~---pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT---PLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCcH
Confidence 4456678899999999999888754 234444444444555678888888877766542 11111122222222
Q ss_pred ---------------------------CCHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHHHcCChhhHHHHHHHHHHcC
Q 011472 166 ---------------------------KSAEKAEIIMQQMRDRGLVKKTIDYNS-MMNVYYQTGNYKKLDSLMHEMEEKG 217 (485)
Q Consensus 166 ---------------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g 217 (485)
..+.+|+++|.+....+ |.-...|. +.-+|.+..-++-+.+++.-.++.
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 33566666666655432 23333332 233445555566666666655543
Q ss_pred CCCCc-chHHHHHHHHHh--cCCh---------------------------------HHHHHHHHHHHhcCCCCCCHHHH
Q 011472 218 IDCDK-YTFSILLSACAA--ASDG---------------------------------EGIDKIVAMMEADRGVVLDWTVY 261 (485)
Q Consensus 218 ~~p~~-~~~~~ll~~~~~--~g~~---------------------------------~~a~~~~~~~~~~~~~~~~~~~~ 261 (485)
-||. ...|.......+ .|+. +.|++++-.+. ++.|...
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~---~~IPEAR-- 288 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM---KHIPEAR-- 288 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH---hhChHhh--
Confidence 2332 222222221111 1111 11122221111 1112211
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC-------CHHHHHHHHHHHh-hcCCCC-cccHH
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG-------NKDDVLRVWKRYK-QNLKVY-NRGYI 332 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~-~~~~~~-~~~~~ 332 (485)
-.|+--|.+.+++.+|..+.+++. |.++.-|-.-.-.+...| ...-|...|++.- ++..-| ..---
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 134445667777777777766642 111112211111222222 2333444454332 111111 11223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHH-HHHHHHhcc
Q 011472 333 CVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWY-LMATGYLQN 411 (485)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~ 411 (485)
++..++.-..+++++...+..+..-=..-|...+| +..+++..|++.+|+++|-++....++ |..+|. .|..+|.++
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 44445555566777777777766543333333443 778888999999999999887765555 455554 556788999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccCHHHHHH-HHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAA-CLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+.++.|++++-++ ..+.+..++.. +..-|.+++.+--|.+.|+.+...+|
T Consensus 442 kkP~lAW~~~lk~--------~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 442 KKPQLAWDMMLKT--------NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred CCchHHHHHHHhc--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9999888877554 22333344443 44578899999889999988877765
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.9e-07 Score=80.46 Aligned_cols=195 Identities=9% Similarity=0.043 Sum_probs=117.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHhhCCHHHHHHHHHhhhhc-CCChHHHHHHHHHHHhcCC
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAKVQGIEQAASYFNCVPEK-LKLPSVYIALLNAYACAKS 167 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~ 167 (485)
+.-+....++..|+.+++.-...+. -..+..... ..++...|++++|...+.-+... .++...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 4455667889999999888775541 122233333 45567899999999999987665 3777778888877778899
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAM 247 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 247 (485)
+.+|..+-.+..+ +...-..|+....+.++-++-..+.+.+.+. ..---+|.......-.+++|+++|.+
T Consensus 107 Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888766543 3333444555555666666555555544331 11112333333344456777777777
Q ss_pred HHhcCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 248 MEADRGVVLDWTVYAT-AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
.. ..+ |+....|. +.-+|.+..-++-+.++++-..+. .++++.+.|...
T Consensus 177 vL-~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLka 226 (557)
T KOG3785|consen 177 VL-QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKA 226 (557)
T ss_pred HH-hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 76 222 33333322 344566666667677776666655 344334444433
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=3.6e-07 Score=78.45 Aligned_cols=314 Identities=13% Similarity=0.037 Sum_probs=203.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH---HHHHHhhCCHHHHHHHHHhhhhcCCChH-HHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR---LDLIAKVQGIEQAASYFNCVPEKLKLPS-VYI 156 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 156 (485)
-++.-.-.+.+.+...|++..|+.-|....+. +|+.|..+ ...|...|+-..|..-+.+..+..||-. .--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~-----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG-----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 34444556677788888888888888888763 45555554 5667778888888888888777777743 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
.-...+.+.|.++.|..-|+...+.. |+..+ ...+..+.-..++-.. ....+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCC
Confidence 34456778888888888888887764 22211 1111111111111111 122334455678
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHH
Q 011472 237 DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRV 316 (485)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (485)
|...|+.....+. +..+ -|...|..-..+|...|.+..|+.-++...+. ..+++.++.-+-..+...|+.+.++..
T Consensus 170 D~~~ai~~i~~ll-Ei~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 170 DCQNAIEMITHLL-EIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred chhhHHHHHHHHH-hcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 8888888888887 5444 67777777888888888888888877777665 455567777777778888888877777
Q ss_pred HHHHhhcCCCCcccHH---H---H------HHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHHcCCHHH
Q 011472 317 WKRYKQNLKVYNRGYI---C---V------ISSLLKFDGMESAEKIFEEWESRNLCHDIR---IPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~---~---l------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~ 381 (485)
.+....-.+.....|. . + +......+++.++.+-.+...+..+..... .+..+-.++...|++.+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 7643332221111111 1 1 112234566777777777777664432222 34455666777888999
Q ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 382 AETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|++.-.+.++ +.|| +.++.--..+|.-..+++.|+.-|+.+.+
T Consensus 326 AiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9998888887 4455 77777778888888889999999988885
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.6e-07 Score=86.04 Aligned_cols=200 Identities=8% Similarity=-0.105 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHH-HHHHHHhhCCHHHHHHHHHhhhhcCCCh-HHHHHHHH
Q 011472 83 MEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI-RLDLIAKVQGIEQAASYFNCVPEKLKLP-SVYIALLN 160 (485)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~ll~ 160 (485)
...|..+...+...|+.+.+...+....+......++..... ....+...|++++|...+++.....|+. ..+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 344666666666777788877777776655422233322222 2445567888999999888887776653 33332 21
Q ss_pred HHH----hcCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 011472 161 AYA----CAKSAEKAEIIMQQMRDRGLVKK-TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 161 ~~~----~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 235 (485)
.+. ..+..+.+.+.++. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 222 23445555555544 1112222 2233455567778888888888888888763 22455677777888888
Q ss_pred CChHHHHHHHHHHHhcCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 236 SDGEGIDKIVAMMEADRGV-VLDW--TVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
|++++|...+++.. .... .++. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWR-DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhh-hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888877 3222 1222 33456777888888888888888887543
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=5.3e-07 Score=85.62 Aligned_cols=373 Identities=14% Similarity=0.043 Sum_probs=245.6
Q ss_pred hHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 011472 50 MYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI 129 (485)
Q Consensus 50 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (485)
|..+--.+...|.... +.+.|++... +..-....|..+...+...|.-..|+.+++.-.....-+.++..+......|
T Consensus 326 ~d~Lt~al~~~g~f~~-lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc 403 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEV-LAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLC 403 (799)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHH
Confidence 4444444444444444 3334444432 3334556788888888888888888888887765542233344444444445
Q ss_pred H-hhCCHHHHHHHHHhhhhc--C----CChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCcchHH
Q 011472 130 A-KVQGIEQAASYFNCVPEK--L----KLPSVYIALLNAYACA-----------KSAEKAEIIMQQMRDRGLVKKTIDYN 191 (485)
Q Consensus 130 ~-~~~~~~~A~~~~~~~~~~--~----~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~ 191 (485)
. +.+..+++..+-.++... + ..+..|..+.-+|... ....++++.+++..+.+.. |.....
T Consensus 404 ~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if 482 (799)
T KOG4162|consen 404 IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIF 482 (799)
T ss_pred HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHH
Confidence 4 467777777766666552 1 2345566665555432 2245677788888776544 444444
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---------------
Q 011472 192 SMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL--------------- 256 (485)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 256 (485)
.+.--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+....+.|...
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhccc
Confidence 45555677788888888888888876666777888888888888888888888877764443310
Q ss_pred ---CHHHHHHHHHHHHh---------c--------------CChHHHHHHHHHHHHh--------h----------ccCC
Q 011472 257 ---DWTVYATAASGYVK---------A--------------GLSDKALAVLRKSEVL--------M----------MHNK 292 (485)
Q Consensus 257 ---~~~~~~~l~~~~~~---------~--------------g~~~~A~~~~~~~~~~--------~----------~~~~ 292 (485)
...|+..++..+-. . ++..+|.+....+... + .+.+
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 11222222222210 0 0111111111111000 0 0011
Q ss_pred c------chhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 011472 293 F------SRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366 (485)
Q Consensus 293 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (485)
+ ...|......+.+.+..++|...+.......+.....|......+...|..++|.+.|.......+. ++...
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~ 721 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSM 721 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHH
Confidence 1 0124566677788888899988888777777888888999999999999999999999999876544 56778
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 367 NHLIDAYCRRGLLHKAET--LIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
.++...+.+.|+..-|.. ++..+.+.+.. +...|-.+...+-+.|+.+.|.+.|..+.+.
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999999999887777 99999986533 6899999999999999999999999999874
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.7e-07 Score=81.54 Aligned_cols=392 Identities=13% Similarity=0.037 Sum_probs=201.2
Q ss_pred hhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCH
Q 011472 56 MLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGI 135 (485)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (485)
.....|+... +...+.+-+... |+|...|+.-..+|+..|++++|++=-..-.+.. |.=+..|.-...++.-.|++
T Consensus 11 aa~s~~d~~~-ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFET-AIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHH-HHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 4455566666 444555555443 4477778888888888888888877666666654 23356677777777788888
Q ss_pred HHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHH------HHHHhC---CCCCCcchHHHHHHHHHHcC----
Q 011472 136 EQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIM------QQMRDR---GLVKKTIDYNSMMNVYYQTG---- 201 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~------~~m~~~---~~~p~~~~~~~l~~~~~~~~---- 201 (485)
++|...|.+-.+..|+ ...++-+..++.... .+-+.| ..+... ........|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 8888888887777765 455666666662110 001111 111000 00001122333333221110
Q ss_pred ---ChhhHHHHHHHHH--------HcC-------CCC---------C-------------cchHHHHHHHHHhcCChHHH
Q 011472 202 ---NYKKLDSLMHEME--------EKG-------IDC---------D-------------KYTFSILLSACAAASDGEGI 241 (485)
Q Consensus 202 ---~~~~a~~~~~~m~--------~~g-------~~p---------~-------------~~~~~~ll~~~~~~g~~~~a 241 (485)
..+...+....+. ..| ..| . ..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111110 001 111 0 01234456666677788888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHH-------HHHHHHHhcCCHHHHH
Q 011472 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYD-------FVITQYAACGNKDDVL 314 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~ 314 (485)
.+-+.... +.. .+..-++....+|...|.+.++....+...+.|... ..-|+ .+..+|.+.++++.++
T Consensus 244 ~q~y~~a~-el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~--rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 244 IQHYAKAL-ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL--RADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHH-hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH--HHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 88888877 433 455555677778888888877777766655553211 12222 2344566667788888
Q ss_pred HHHHH-HhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 315 RVWKR-YKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 315 ~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
..|.. +.....|+.. .+....+++....+...-.++..- .-...-...+.+.|++..|...|.+++...
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A-~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKA-EEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 88874 3333333321 122223333333222222111110 001111344555666666666666666654
Q ss_pred CCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
. -|...|.....+|.+.|.+..|++-.+..++ --++....|..=..++....+++.|.+.|.+.++.+|.+.+
T Consensus 389 P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 389 P-EDARLYSNRAACYLKLGEYPEALKDAKKCIE------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred C-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 2 2456666666666666666666666666554 11222233333344444555666666666666666654444
Q ss_pred HHH
Q 011472 474 LQD 476 (485)
Q Consensus 474 ~~~ 476 (485)
...
T Consensus 462 ~~~ 464 (539)
T KOG0548|consen 462 AID 464 (539)
T ss_pred HHH
Confidence 333
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.11 E-value=6.9e-06 Score=75.12 Aligned_cols=411 Identities=12% Similarity=0.060 Sum_probs=227.1
Q ss_pred hhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHH
Q 011472 43 SLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADV 122 (485)
Q Consensus 43 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 122 (485)
+|...++|+.|++-+... +.+.+..+.+++.. -++-++..|..-|+...+..+++....+|.+.+..- ++.+.+
T Consensus 16 nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW 89 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLW 89 (656)
T ss_pred CCccHHHHHHHHHHHccC--CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHH
Confidence 444455666666666554 33336666666654 234455666666777677777777777776666543 344444
Q ss_pred HHHHHHHHh-hCCHHH----HHHHHHhhhh-cCC---ChHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCC
Q 011472 123 AIRLDLIAK-VQGIEQ----AASYFNCVPE-KLK---LPSVYIALLNA---------YACAKSAEKAEIIMQQMRDRGLV 184 (485)
Q Consensus 123 ~~~~~~~~~-~~~~~~----A~~~~~~~~~-~~~---~~~~~~~ll~~---------~~~~~~~~~a~~~~~~m~~~~~~ 184 (485)
..-+..-.+ .|+... ..+.|+-... .+- +-..|+..+.. |..+.+++...++|+++...-+.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 444433322 122211 2222222221 121 22334444432 33344556666677776654211
Q ss_pred C------CcchHHHHHHHH-------HHcCChhhHHHHHHHHHH--cCCCCCcch---------------HHHHHHHHHh
Q 011472 185 K------KTIDYNSMMNVY-------YQTGNYKKLDSLMHEMEE--KGIDCDKYT---------------FSILLSACAA 234 (485)
Q Consensus 185 p------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~ll~~~~~ 234 (485)
- |-..|..=|+.. -+...+..|.++++++.. +|+..+..+ |..+|.- -+
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Ek 248 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EK 248 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hh
Confidence 0 111111111111 122345666666666643 243322222 3333321 11
Q ss_pred cCCh---------HHHHHHHHHHHhcCCCCCCHHHH-H----HHHHHHHhcCC-------hHHHHHHHHHHHHhhccCCc
Q 011472 235 ASDG---------EGIDKIVAMMEADRGVVLDWTVY-A----TAASGYVKAGL-------SDKALAVLRKSEVLMMHNKF 293 (485)
Q Consensus 235 ~g~~---------~~a~~~~~~~~~~~~~~~~~~~~-~----~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~ 293 (485)
.+-+ ....-++++...-.+..|+.... . ..-+.+...|+ .+++..+++...... ...+
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~ 327 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKEN 327 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHH
Confidence 1111 12223334333233443432211 1 11122333344 455666666654432 2223
Q ss_pred chhHHHHHHHHHhcC---CHHHHHHHHHHHh-hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHH
Q 011472 294 SRAYDFVITQYAACG---NKDDVLRVWKRYK-QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCH-DIRIPNH 368 (485)
Q Consensus 294 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 368 (485)
..+|..+.+.--..- ..+.....++.+. .....-..+|...++...+..-++.|..+|.++.+.+..+ ++.++++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 334444433222222 2555566666433 2223334578999999999999999999999999888777 7788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH--HHHHHHH
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK--ECLAACL 445 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~~~l~ 445 (485)
++..||. ++..-|.++|+--.+.- +| +.--...++-+...++-..+..+|++.+.. ++.|+. ..|..++
T Consensus 408 ~mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-----~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 408 LMEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-----VLSADKSKEIWDRML 479 (656)
T ss_pred HHHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-----cCChhhhHHHHHHHH
Confidence 9988875 67899999999866532 34 444466778888899999999999999983 566654 8899999
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.--..-|+...+.++-+++....+
T Consensus 480 ~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999999998887765544
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=1.2e-06 Score=92.43 Aligned_cols=341 Identities=9% Similarity=-0.048 Sum_probs=214.2
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--cchHHHHHHH
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGL------VKK--TIDYNSMMNV 196 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------~p~--~~~~~~l~~~ 196 (485)
......|+++.+..+++.++... .++.........+...|++++|...+......-- .|. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456788888888887764321 2223333445556678999999999987754311 111 1112223345
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCCHHHHHHHHHHH
Q 011472 197 YYQTGNYKKLDSLMHEMEEKGIDCDK----YTFSILLSACAAASDGEGIDKIVAMMEAD---RGV-VLDWTVYATAASGY 268 (485)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~ 268 (485)
+...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+++.... .+. .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56889999999999998764111121 23345556677899999999998887621 111 11123445667788
Q ss_pred HhcCChHHHHHHHHHHHHhhcc--C---C-cchhHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCC--CcccHHHHHHH
Q 011472 269 VKAGLSDKALAVLRKSEVLMMH--N---K-FSRAYDFVITQYAACGNKDDVLRVWKRYKQ---NLKV--YNRGYICVISS 337 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~~~~--~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~li~~ 337 (485)
...|++++|...+++....... . + ....+..+...+...|++++|...+..... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999999887664111 1 1 123345566677888999999999884322 1112 12344456667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-cccH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHH
Q 011472 338 LLKFDGMESAEKIFEEWESRNLCHD-IRIP-----NHLIDAYCRRGLLHKAETLIYKAQLRGTEPN---VRTWYLMATGY 408 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~ 408 (485)
....|+.+.|...+........... ...+ ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7889999999999988864311111 1111 1122445568899999999877654221111 11134566778
Q ss_pred hccCCHHHHHHHHHHHHHhhccCCCCccC-HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 409 LQNNQSEKGVEAMKKALVLLEAGTRWKPS-KECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 409 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
...|++++|...++++.... ...+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999988631 11222222 2456666778899999999999998887654
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3.9e-07 Score=76.73 Aligned_cols=393 Identities=11% Similarity=0.028 Sum_probs=237.7
Q ss_pred CchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHH-HHH
Q 011472 48 SSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVA-IRL 126 (485)
Q Consensus 48 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (485)
..+.+.+..+.+..+..+ +.+++..-.++. +-+....+.+...|-+..++..|-+.++++.... |....+. +..
T Consensus 11 Geftaviy~lI~d~ry~D-aI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~A 85 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYAD-AIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQA 85 (459)
T ss_pred CchHHHHHHHHHHhhHHH-HHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHH
Confidence 347778888887777776 555665555533 3477788888889999999999999999987753 3333333 336
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLPSVYIALL----NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
..+.+.+.+.+|.++...|... ....+..+ ...-..+++..+..++++....| +..+.+.......+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 7777889999999998888763 22222222 22334688888888888877543 55566666666678899
Q ss_pred hhhHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------------CCHH--------H
Q 011472 203 YKKLDSLMHEMEEK-GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVV-------------LDWT--------V 260 (485)
Q Consensus 203 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~--------~ 260 (485)
+++|.+-|+...+- |.. ....|+..+ +..+.|+.+.|.+...++. +.|++ ||+. .
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCchhcccchHHHH
Confidence 99999999998876 455 445676555 4556788999998888887 55542 1211 1
Q ss_pred HHHHHH-------HHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHH
Q 011472 261 YATAAS-------GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYIC 333 (485)
Q Consensus 261 ~~~l~~-------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 333 (485)
-+.++. .+.+.|+++.|.+.+-+|..+.....|++|...+.-.- ..+++.+..+-+.-+....|-...||..
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHH
Confidence 123333 34577899999999988876644555667766654322 2344555555555333334556678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNL-CHDIRIPNHLIDAYCR-RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (485)
++-.||+..-++.|-.++.+-...-. -.+...|+ |++++.. .-..++|.+-++.+...- .-......+-+.---..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 99999999888888888765322111 01223333 3344433 345677766665554310 00001111111111111
Q ss_pred CC---HHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 412 NQ---SEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 412 g~---~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
++ ...|++-|++.++. -..+...-...+.+..|+..++++|+.-.+
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~---------YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEK---------YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 12333334443331 112222333446678889999999887554
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.8e-05 Score=73.35 Aligned_cols=344 Identities=10% Similarity=0.051 Sum_probs=192.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-Ch--HHHHHHHHHHHhcCCH
Q 011472 92 KFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LP--SVYIALLNAYACAKSA 168 (485)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~ll~~~~~~~~~ 168 (485)
.+-+.+..++|+..++-. -+.++.........+.+.|++++|..+|+.+.+.+. +. ..-..++.+-..
T Consensus 88 c~Yrlnk~Dealk~~~~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---- 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---- 158 (652)
T ss_pred HHHHcccHHHHHHHHhcc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----
Confidence 345778999999988822 224566777778999999999999999999977642 21 111111111100
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHH---HHHHHcCChhhHHHHHHHHHHcC-------------CCCCcc-hHHHHHHH
Q 011472 169 EKAEIIMQQMRDRGLVKKTIDYNSMM---NVYYQTGNYKKLDSLMHEMEEKG-------------IDCDKY-TFSILLSA 231 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~ll~~ 231 (485)
-.+. +.+... ..| ..+|..+. ..+...|++.+|+++++...+.+ +.-+.. .-..+.-.
T Consensus 159 l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 LQVQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0110 122111 122 22333332 23445666777776666662211 000000 11123334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHH----HHHHHHHHh-------------------------------------
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDWTVY----ATAASGYVK------------------------------------- 270 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~------------------------------------- 270 (485)
+...|+.++|..+|.... ..+. +|.... |.|+..-..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i-~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDII-KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HHHhcchHHHHHHHHHHH-HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555667777777666666 4343 333211 111111000
Q ss_pred --------cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc--CCHHHHHHHHHHHhhcCCCC-cccHHHHHHHHH
Q 011472 271 --------AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC--GNKDDVLRVWKRYKQNLKVY-NRGYICVISSLL 339 (485)
Q Consensus 271 --------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~ 339 (485)
.+.-+.+.++.... ....|. ..+..++..+.+. ..+..+.+++.....+.+.. ..+.-..+....
T Consensus 312 N~~lL~l~tnk~~q~r~~~a~l---p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFTNKMDQVRELSASL---PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHhhhHHHHHHHHHhC---CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 01111111111111 111222 3444444444332 24566777776655555544 445566777788
Q ss_pred hcCCHHHHHHHHH--------HHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCc----HHHHHHHH
Q 011472 340 KFDGMESAEKIFE--------EWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLR--GTEPN----VRTWYLMA 405 (485)
Q Consensus 340 ~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~li 405 (485)
..|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..++++.... .-.+. ..++..+.
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 9999999999999 555554444 45566777888888888888888777542 01122 23344444
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLL 464 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (485)
..-.+.|+-++|..+++++.+ -.++|..+...++.+|++. |.+.|..+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k------~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVK------FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHH------hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 455678999999999999997 5677889999999998875 456676665544
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=6e-08 Score=88.94 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=134.1
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 011472 197 YYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDK 276 (485)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 276 (485)
+.+.|++.+|.-.|+...+.... +...|.-|.......++-..|+..+++.. +.+. -+....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl-~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCL-ELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 45566666666666666655332 45566666666666666666666666666 4333 345555556666666666666
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHH---------HHHHhcCCHHHHHHHHHHHh--hcCCCCcccHHHHHHHHHhcCCHH
Q 011472 277 ALAVLRKSEVLMMHNKFSRAYDFVI---------TQYAACGNKDDVLRVWKRYK--QNLKVYNRGYICVISSLLKFDGME 345 (485)
Q Consensus 277 A~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~ 345 (485)
|++.|+...... ++. .|.... ..+..........++|-.+. .+..+|+.+...|.-.|--.|+++
T Consensus 372 Al~~L~~Wi~~~--p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHhC--ccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 666666654431 110 000000 01111112223333333222 222356666666666666666677
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011472 346 SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKA 424 (485)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 424 (485)
+|...|+.++...+. |..+||.|.-.++...+.++|+..|.+.++ ++|+ +...-.|.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 777777666665333 556667776666666666777777766666 4455 444445555666666777776666666
Q ss_pred HHhhcc----CCCCccCHHHHHHHHHHHHhcCCHh
Q 011472 425 LVLLEA----GTRWKPSKECLAACLGYYKKERDIE 455 (485)
Q Consensus 425 ~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~ 455 (485)
+.+.+. ...-.++...|..|=.++.-.++.|
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 654221 1111123345555554555555544
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.5e-08 Score=88.01 Aligned_cols=127 Identities=15% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCcccHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAA----CGNKDDVLRVWKRYKQNLKVYNRGYICVI 335 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li 335 (485)
.....+.+|.+.++++.|.+.++.|.+. . +| .+...+..++.. ...+.+|..+|+.+....++++.+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--D-ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3334444445555555555555554432 1 11 233333333322 12345555555544444444444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 011472 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLL-HKAETLIYKAQL 391 (485)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 391 (485)
.+....|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5555555555555555554443322 333333344444444444 444455555544
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=87.09 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=116.1
Q ss_pred HHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHH
Q 011472 129 IAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 207 (485)
+.+.|++.+|.-.|+.....+|. ...|..|.......++-..|+..+.+..+.... +....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 44556666666666666655543 456666666666666666666666666655433 4445555555566666666666
Q ss_pred HHHHHHHHcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011472 208 SLMHEMEEKGID--------CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALA 279 (485)
Q Consensus 208 ~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 279 (485)
+.++.-+....+ ++...-.. ..+.....+....++|-++....+..+|+.++..|.-.|-..|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 666655442110 00000000 11111222334444444444233433555555555555666666666666
Q ss_pred HHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 280 VLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
.|+.+... .|.|...||.|.-.++...+.++|+.-|++...-.|--+.+...|.-+|...|.+++|.+.|-.++
T Consensus 452 cf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66665554 444455566666666665666666666655544444444445555555555566555555554443
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=3.7e-08 Score=86.99 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=108.1
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh
Q 011472 52 KLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK 131 (485)
Q Consensus 52 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (485)
-+.++....|... .++.++.... .|.......+...+....+-+.++.-++..........++........++..
T Consensus 40 ~~~Rs~iAlg~~~----~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 40 YQYRSYIALGQYD----SVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHTT-HH----HHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCChh----HHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3444444444322 2444444333 5555555555544443334444444444333322111112222222344455
Q ss_pred hCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHH
Q 011472 132 VQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLD 207 (485)
Q Consensus 132 ~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 207 (485)
.|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|.
T Consensus 115 ~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 115 EGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 66666666666543 244555556666666666666666666666542 33333444444332 22466666
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 011472 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS-DKALAVLRKSEV 286 (485)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 286 (485)
.+|+++.+. ..++..+.+.+..++...|++++|.+++.+.. ..+. -+..+...++.+....|+. +.+.+.+.++..
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al-~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL-EKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC-CC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666665443 44555566666666666666666666666665 4332 3445555555555555555 445556666554
Q ss_pred h
Q 011472 287 L 287 (485)
Q Consensus 287 ~ 287 (485)
.
T Consensus 265 ~ 265 (290)
T PF04733_consen 265 S 265 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=7.2e-07 Score=89.89 Aligned_cols=225 Identities=12% Similarity=0.021 Sum_probs=128.2
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 011472 187 TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD-----KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVY 261 (485)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 261 (485)
...|-.-|....+.++.++|.++.++.+.. +.+. ...|.++++.-..-|.-+...++|+++. +.. -....|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QYC--DAYTVH 1533 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hhc--chHHHH
Confidence 334555555555556666666666665543 2111 1245555555555555566666666666 211 223445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CcccHHHHHHHHH
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKV--YNRGYICVISSLL 339 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~ 339 (485)
..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+.++-+.|..++.+.....+- ........+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 56666666677777777777776666 2233356666666666666666666666644333332 3334444555556
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHH
Q 011472 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKG 417 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A 417 (485)
+.|+.+.+..+|+.....-++ -...|+.+++.-.++|+.+.++.+|++....++.|- -..|...+..--+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 667777777777776665433 456677777777777777777777777777666554 33444444444444544333
Q ss_pred H
Q 011472 418 V 418 (485)
Q Consensus 418 ~ 418 (485)
+
T Consensus 1691 E 1691 (1710)
T KOG1070|consen 1691 E 1691 (1710)
T ss_pred H
Confidence 3
No 97
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=2.6e-06 Score=76.38 Aligned_cols=157 Identities=11% Similarity=-0.008 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc---CC----HHHHHHH
Q 011472 313 VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR---GL----LHKAETL 385 (485)
Q Consensus 313 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~~ 385 (485)
++..++.+....+-+..+|+....++...|+++++.+.++++++.++. |...|+.....+.+. |. .++....
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 344443333333344444444444444444455555555555444333 334444333333322 11 1334444
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC---------
Q 011472 386 IYKAQLRGTEPNVRTWYLMATGYLQN----NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER--------- 452 (485)
Q Consensus 386 ~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 452 (485)
..+++..... |...|+.+...+... +...+|.+.+.+..+ .-..+...+..|++.++...
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~------~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS------KDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc------ccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 4444443221 355555555555442 223445555555443 11224445555555555421
Q ss_pred ---------CHhHHHHHHHHHhcCCCCCHHHHHH
Q 011472 453 ---------DIEGADYFIKLLTGKEIISADLQDR 477 (485)
Q Consensus 453 ---------~~~~a~~~~~~~~~~~~~~~~~~~~ 477 (485)
..++|.++++.+.+.+|+...-|+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3467888888886666665554443
No 98
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=1.7e-06 Score=77.54 Aligned_cols=200 Identities=8% Similarity=-0.071 Sum_probs=91.2
Q ss_pred CHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh--hhHHHH
Q 011472 134 GIEQAASYFNCVPEKLKL-PSVYIALLNAYACAK-SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY--KKLDSL 209 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~~a~~~ 209 (485)
+.++|..+.+++...+|+ ..+|+....++...| ++++++..++++.+.+.+ +..+|+...-.+.+.++. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHH
Confidence 334444444444444433 223443333344444 345555555555544333 333444333333333331 344555
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CC----hHHHHHHHH
Q 011472 210 MHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA---GL----SDKALAVLR 282 (485)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~ 282 (485)
++.+++...+ |..+|+....++...|+++++++.++++. +.++ -+...|+.....+.+. |. .+++++...
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 5555543322 34445444445555555555555555555 4343 3344444443333332 11 234555555
Q ss_pred HHHHhhccCCcchhHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 011472 283 KSEVLMMHNKFSRAYDFVITQYAAC----GNKDDVLRVWKRYKQNLKVYNRGYICVISSLL 339 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 339 (485)
++... .|.+..+|+.+...+... ++..+|.+.+.......+.+......|++.++
T Consensus 208 ~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 208 DAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 55554 445556666666666552 22344555544433333334444555555554
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=9e-06 Score=85.81 Aligned_cols=302 Identities=10% Similarity=-0.020 Sum_probs=187.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcC--C----CCCcc--hHHHHHHH
Q 011472 160 NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG--I----DCDKY--TFSILLSA 231 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~----~p~~~--~~~~ll~~ 231 (485)
......|+++.+...++.+.......+..........+...|+++++..++....+.- . .|... ....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445568888877777766322111123333444555667899999999998876531 1 11111 11223345
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhhc----cCCcchhHHHHHHH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDW----TVYATAASGYVKAGLSDKALAVLRKSEVLMM----HNKFSRAYDFVITQ 303 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~ 303 (485)
+...|+++.|...+++.. ......+. ...+.+...+...|++++|...+++...... ......++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 667899999999999987 32111221 2445666778889999999999998875411 11112355667778
Q ss_pred HHhcCCHHHHHHHHHHHhh----cCCC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC--CcccHHHHHH
Q 011472 304 YAACGNKDDVLRVWKRYKQ----NLKV----YNRGYICVISSLLKFDGMESAEKIFEEWESRNL--CH--DIRIPNHLID 371 (485)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~ 371 (485)
+...|++++|...++.... ...+ ....+..+...+...|++++|...+.+...... .+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999884321 1111 122344556667788999999999988765311 11 1233445666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-cHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC---HHHHH
Q 011472 372 AYCRRGLLHKAETLIYKAQLRGTEP-NVRTW-----YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS---KECLA 442 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~---~~~~~ 442 (485)
.+...|+.++|...+.+........ ....+ ...+..+...|+.+.|.+++...... ..... ...+.
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~~~~~ 695 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-----EFANNHFLQGQWR 695 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-----CCccchhHHHHHH
Confidence 7788999999999998885421111 11111 11224455688999999987765431 11111 11234
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 443 ACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 443 ~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.+..++...|+.++|...+++..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788999999999999987664
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=2.5e-06 Score=86.22 Aligned_cols=250 Identities=10% Similarity=0.072 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCD-KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLD---WTVYATAASGYVKAGLSDKALA 279 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 279 (485)
+.|.++-...+. .|| ...|-..|.-....++.++|.++.+++....+++-. ...|.++++.-..-|.-+...+
T Consensus 1442 esaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 344444444443 244 457778888889999999999999999844444322 3467777777778888899999
Q ss_pred HHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011472 280 VLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL 359 (485)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 359 (485)
+|+++.+. ..+ -..|..|...|.+.+..++|.++++.|..........|...++.+.+.++-+.|..++.++.+.-+
T Consensus 1519 VFeRAcqy--cd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1519 VFERACQY--CDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHh--cch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 99999886 333 378999999999999999999999977666667778899999999999999999999999987633
Q ss_pred CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH
Q 011472 360 CH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK 438 (485)
Q Consensus 360 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 438 (485)
+- .+......+..-.+.|+.+.+..+|+.......+ -...|+.+++.-.++|+.+.+..+|++++.. ++.|-.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l-----~l~~kk 1669 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-----KLSIKK 1669 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCChhH
Confidence 21 2334555666677899999999999999876432 5789999999999999999999999999986 777744
Q ss_pred --HHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 439 --ECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 439 --~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
..|...+..-.+.|+-+.++.+=.++.
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 567777777777788766655544443
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.2e-05 Score=76.05 Aligned_cols=352 Identities=11% Similarity=0.044 Sum_probs=183.3
Q ss_pred HHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHhhCCHHHHHHHHHhhh
Q 011472 70 LLDQWVEEGR--PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSN-FVLTPADVAIRLDLIAKVQGIEQAASYFNCVP 146 (485)
Q Consensus 70 ~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 146 (485)
++++.++-++ .-|+...+..++++...+-..+-+++++.+.-.+. +.-+.+.-+.++-... .-+.....++.+++.
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhc
Confidence 4455554443 34666777788888888888888888888875441 1111111122221111 122233333333333
Q ss_pred hcC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------CCCCCcchHHHHHHHHHHcCCh
Q 011472 147 EKL-KLPSVYIALLNAYACAKSAEKAEIIMQQMRDR----------------------GLVKKTIDYNSMMNVYYQTGNY 203 (485)
Q Consensus 147 ~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----------------------~~~p~~~~~~~l~~~~~~~~~~ 203 (485)
.-+ |+ +.......+-+++|..+|++.-.. .+ -....|..+..+-.+.|.+
T Consensus 1048 nyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1048 NYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred cCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCch
Confidence 221 11 111122222233333333321100 01 1344677777777777777
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK 283 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 283 (485)
.+|++-|-+. -|...|..++....+.|.+++-.+++.... +..-+|...+ .|+-+|++.++..+-.++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id~--eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYIDS--ELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccchH--HHHHHHHHhchHHHHHHHh--
Confidence 7777655432 255677778888888888888888777776 5555566555 6777888877777655544
Q ss_pred HHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH---------
Q 011472 284 SEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW--------- 354 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------- 354 (485)
..|+......+.+-|...|.++.|.-+|.. ..-|..+...+...|++..|...-++.
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 234445555566666666666666655542 223444444445555444444332221
Q ss_pred -------------HhcCC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHH
Q 011472 355 -------------ESRNL--CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419 (485)
Q Consensus 355 -------------~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 419 (485)
.-.|+ .....-...++..|-..|-+++...+++...... ......|+.|.-.|.+- ++++..+
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 11111 1111223445566666666666666665543211 12344555555555543 3444444
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 420 AMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.++-.... .-.-.+++++-+..-|.+..-++.+..+.
T Consensus 1334 Hl~LFwsR-----------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1334 HLKLFWSR-----------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44433331 11234677888888888888777765543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=1.4e-06 Score=75.71 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=43.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
.+...+.+.|++++|+..++++++. .++.+.....+..+..++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN---YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH---CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455677788888888888888763 00111234677777788888888888888887776654
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.7e-05 Score=68.52 Aligned_cols=236 Identities=14% Similarity=0.067 Sum_probs=157.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-------
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA------- 262 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------- 262 (485)
...+.++..+..+++.|.+-+....... -+..-++....+|...|........-.... +.|. -...-|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gr-e~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV-EVGR-ELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhH-HHHHHHHHHHHHHH
Confidence 4557777778888999999999988864 355566677778888888877776666655 4343 2222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-cccHHHHHHHHHhc
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY-NRGYICVISSLLKF 341 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 341 (485)
.+..+|.+.++++.|+..|.+..... ..|+ ...+....++++.......- ..|. ..-.-.-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEH-RTPD---------LLSKLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhh-cCHH---------HHHHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhc
Confidence 24446677789999999999866542 1121 22333444555544442111 1111 11122336777889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEA 420 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 420 (485)
|++..|...|.++++..+. |...|.--.-+|.+.|.+..|.+-.+...+. .|+ ...|..=..++....++++|++.
T Consensus 372 gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred cCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988644 7888999999999999999999888888775 344 44555555566666788999999
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHHHh
Q 011472 421 MKKALVLLEAGTRWKPSKECLAACLGYYKK 450 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 450 (485)
|++.++ ..|+..-+..-+.-|..
T Consensus 449 y~eale-------~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 449 YQEALE-------LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHh-------cCchhHHHHHHHHHHHH
Confidence 998885 35666555555544444
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.1e-06 Score=83.15 Aligned_cols=214 Identities=13% Similarity=0.051 Sum_probs=113.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 011472 192 SMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA 271 (485)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (485)
.+...+.+.|-...|..+|+++. .|..++.+|...|+..+|..+..+.. + -+|+...|..+.+.....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhhccCh
Confidence 34444555555666666665543 23445555666666666666655555 3 235555555555555555
Q ss_pred CChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 011472 272 GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIF 351 (485)
Q Consensus 272 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 351 (485)
.-+++|.++.+....+ +-..+.....+.++++++.+.|+.-....+....+|..+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 5556666665554322 11111112223455666666665433333444455555555566666666666666
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 352 EEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
.......+. +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 655543222 33456666666666666666666666665554 224444555555555666666666666665554
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=3.9e-06 Score=79.45 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=178.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
-..+...+...|-..+|..+|+++.. |..++.+|...|+..+|..+..+-.+ -+||...|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 34566788889999999999987653 67788899999999999999988887 47888888888887777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHH
Q 011472 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (485)
..-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+. .+-...+|..+..+..+.++++.|.
T Consensus 470 ~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHH
Confidence 77788888888776522 1122333344579999999999998877 3444579999999999999999999
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 315 RVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
+.|.......+.+...|+.+-.+|.+.++..+|...+.+..+... -+..+|...+....+.|.++.|.+.+.++.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999988888888889999999999999999999999999999874 3777888888888999999999999998865
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=0.0001 Score=63.93 Aligned_cols=297 Identities=13% Similarity=0.008 Sum_probs=182.6
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhH-HHHHHHHH
Q 011472 51 YKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPAD-VAIRLDLI 129 (485)
Q Consensus 51 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 129 (485)
-.+...+...|...+++. -+...++ |.|.+-.++..-...|...|+...|+.-+.+.++.. ++-.. .......+
T Consensus 42 lElGk~lla~~Q~sDALt-~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALT-HYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHhhhHHHHHH-HHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhh
Confidence 345555555555555322 2222222 333333444555667888999999999999998854 23222 22225678
Q ss_pred HhhCCHHHHHHHHHhhhhcCCCh----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 011472 130 AKVQGIEQAASYFNCVPEKLKLP----SVY------------IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSM 193 (485)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~----~~~------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 193 (485)
.+.|.+++|..-|+.+....|+. .++ ...+..+...|+...|+.....+.+..+- |...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHH
Confidence 89999999999999998887632 111 12233455678888888888888876544 77777778
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH----H-----
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYAT----A----- 264 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l----- 264 (485)
..+|...|++..|+.-+....+..-. ++.++-.+-..+...|+.+.++...++.. .+.||-..+-. +
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHH
Confidence 88888888888888777777654332 44455556667778888888888887777 33455332211 1
Q ss_pred ----HHHHHhcCChHHHHHHHHHHHHhhccCC--cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 011472 265 ----ASGYVKAGLSDKALAVLRKSEVLMMHNK--FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL 338 (485)
Q Consensus 265 ----~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 338 (485)
+......++|.++++..+...+..+..+ ....+..+-.++...+++.+|+..-.......+.|..++.--..+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1122344566666666665555421111 1123444455555666666666666655555555566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 011472 339 LKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~ 357 (485)
.-...++.|..-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 6666666666666666554
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=2.4e-06 Score=74.34 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhcc-CCcchhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMH-NKFSRAYDFVITQYAACGNKDDVLRVWKRYK 321 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (485)
+...|.+.|++++|+..++......+. +.....+..+..++...|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444556666666666666665554211 1123455566666666666666666555443
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.6e-05 Score=64.64 Aligned_cols=337 Identities=10% Similarity=-0.010 Sum_probs=216.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHH
Q 011472 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
|+....--+.+++..+.+..+++.|++++..-.+.. +.+....+.+..+|....++..|...++++....|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 444444456777888888999999999999888765 335667777788888999999999999999988887655543
Q ss_pred H-HHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 158 L-LNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNV--YYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 158 l-l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
. ...+-+.+.+..|+++...|... |+...-..-+.+ ..+.+++..+..+.++....| +..+.+...-...+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 2 35566789999999999888764 222221111222 235678888888888775322 34445555555678
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcc-C-----------Ccc--------
Q 011472 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMH-N-----------KFS-------- 294 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----------~~~-------- 294 (485)
.|+++.|.+-|+...+-.|. -....|+. .-++.+.|+++.|++...++.++|.. . +|+
T Consensus 157 egqyEaAvqkFqaAlqvsGy-qpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGY-QPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred cccHHHHHHHHHHHHhhcCC-CchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 99999999999999855566 44556664 44566789999999999998887431 1 111
Q ss_pred h-------hHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 011472 295 R-------AYDFVITQYAACGNKDDVLRVWKRYKQ--NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRI 365 (485)
Q Consensus 295 ~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (485)
. ++|.-...+.+.|+++.|.+.+-.+.. ....|++|...+.-.-. .+++....+-+.-+....+- ...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHH
Confidence 1 133333345677888888877764432 23356666665433222 23444555555555555443 4567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTE-PNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|..++-.||+..-++.|-+++.+-...-.+ .+...|+.|=..-...-..++|.+-+.....
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888999999999998887653221100 1233344332222234456666665555443
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.1e-08 Score=57.43 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=15.4
Q ss_pred CCCCCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 182 GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 182 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=2.1e-06 Score=85.79 Aligned_cols=132 Identities=9% Similarity=-0.038 Sum_probs=70.3
Q ss_pred CCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcc-
Q 011472 217 GIDCD-KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS- 294 (485)
Q Consensus 217 g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 294 (485)
+..|+ ...+..|+..+...+++++|.++.+... +... -....|-.+...+...++.+++..+ .+... .+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l-~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHL-KEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccc
Confidence 34443 4567788888888889999998888766 3222 2333444444477777777777666 44433 22222
Q ss_pred ------------------hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 295 ------------------RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 295 ------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
.++..+..+|-+.|+.+++..+|+....-.+-|+.+.+.+...+... ++++|.+++.++.
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 23333444444444444444444433333344444444444444444 4444444444443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=2.4e-06 Score=71.30 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HHcCC--HHHHH
Q 011472 307 CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAY-CRRGL--LHKAE 383 (485)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~ 383 (485)
.++.+++...++......+.+...|..+...+...|+++.|...|++..+..+. +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 444455555555444455555556666666666666666666666666555433 445555555542 44444 35666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 384 TLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.++++..+.+.. +...+..+...+...|++++|+..|+++++
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666654322 355555555556666666666666666655
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2e-08 Score=56.34 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011472 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423 (485)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (485)
+.||..||+.||.+|++.|+.++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444444444444444444444444433
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=6.8e-06 Score=81.36 Aligned_cols=133 Identities=17% Similarity=0.034 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVI 335 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 335 (485)
.+...+..|.......|++++|..+++...+. .|.+......+...+.+.+++++|+...+......+.+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34555555566666666666666666665554 4444455555556666666666666666655555555555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
.++.+.|++++|..+|+++...+.. +..++..+...+.+.|+.++|...|++..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666553221 345555555555556666666666655554
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=1.6e-05 Score=75.37 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=124.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC 307 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (485)
.+.+.....+|.+|+.+++.++ +.+. -..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.
T Consensus 738 aieaai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhcc
Confidence 3455566778888888888887 4333 2334566778888888888888888763 3556677888888
Q ss_pred CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 011472 308 GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387 (485)
Q Consensus 308 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 387 (485)
|+|+.|.++-... .+.......|..-..-+-+.|++.+|+++|-.+. .|+ .-|.+|-+.|..|...++.+
T Consensus 805 ~kw~da~kla~e~-~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC-HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred ccHHHHHHHHHHh-cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 8888887765532 2222344556666666777888888887775442 223 35677888888888777776
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011472 388 KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYF 460 (485)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 460 (485)
+-... .-..|...+..-+-..|+...|.+.|-++-+ |.+-+..|...+.|++|.++
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHH
Confidence 54321 1144555666777777888888777765542 33344445555555555443
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00035 Score=69.07 Aligned_cols=287 Identities=10% Similarity=0.099 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhcCChHHH-----------HHHHHHHHhcC-CCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC---
Q 011472 85 QLRIIIKKFRLYKRFSHA-----------LQISMWMTKKS-NFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL--- 149 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 149 (485)
.|....+.+.++.+.+.= .++.+...... .-.-+|+.....+.++...+-..+-.++++++.-.+
T Consensus 938 lfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 938 LFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred HHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 345555555555554322 23344444433 123578888888999999999999999999987542
Q ss_pred -CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHH
Q 011472 150 -KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228 (485)
Q Consensus 150 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (485)
.+...-|.|+-...+ -+.....+..+++-.... | .+...+..++-+++|..+|+... .+....+.|
T Consensus 1018 se~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VL 1084 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVL 1084 (1666)
T ss_pred ccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHH
Confidence 122233444444333 445666677776655421 2 24445667778899999988763 244455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC
Q 011472 229 LSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 229 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
+. ..+.++.|.++-++.. .+..|+.+..+-...|...+|++-|-+. +|+..|..+++...+.|
T Consensus 1085 ie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcC
Confidence 54 4566777776665553 3456888888888999998888877542 34478889999999999
Q ss_pred CHHHHHHHHHHHhhcCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 011472 309 NKDDVLRVWKRYKQNLK-VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387 (485)
Q Consensus 309 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 387 (485)
.+++-.+.+.|..+..+ |.. =+.++-+|++.+++.+.++++ ..||..-...+.+-|...|.++.|.-+|.
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999998887654433 433 456888888888877766554 24566666677777777777777766653
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhccCCHHHHHH
Q 011472 388 KAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419 (485)
Q Consensus 388 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 419 (485)
++..|..|...+...|+++.|..
T Consensus 1219 ---------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1219 ---------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred ---------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=6.3e-06 Score=68.81 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=68.2
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCC--hHH
Q 011472 200 TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY-VKAGL--SDK 276 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 276 (485)
.++.+++...++...+.+. .|...|..+...|...|+++.|...|++.. .... .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l~P-~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQAL-QLRG-ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3444555555555544322 244555555566666666666666666665 3332 3445555555542 44454 366
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc
Q 011472 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG 330 (485)
Q Consensus 277 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 330 (485)
|.+++++..+. .+.+..++..+...+...|++++|+..|+.+....+|+..-
T Consensus 129 A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 129 TREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 66666666655 34444566666666666666666666666555555555443
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=0.00011 Score=70.80 Aligned_cols=339 Identities=14% Similarity=0.081 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCCh-hHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHH
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNF------VLTP-ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSV 154 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 154 (485)
+...|..+.+.|.+..+.+-|.-.+..|....+. .-++ +.-.-........|.+++|..+|++...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 4567888888888888888887777766543210 0111 2222334445577888888888886654
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHH----------HHcC-------
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM----------EEKG------- 217 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m----------~~~g------- 217 (485)
|..|=..|-..|.+++|.++-+.=-... =..||..-..-+-..++.+.|++.|++. +...
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 3334455667788888888765432221 2345666666666677788777777653 1111
Q ss_pred --CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcch
Q 011472 218 --IDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSR 295 (485)
Q Consensus 218 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 295 (485)
-..|...|.-...-.-..|+.+.|+.+|...+ + |-+++...|-.|+.++|-++-++-. |..
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~esg-------d~A 968 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEESG-------DKA 968 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhcc-------cHH
Confidence 01233344444444455677777777777766 2 3346666777788888777766532 235
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH-------------HhcC--CHHHHHHHHHHHHhcCCC
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL-------------LKFD--GMESAEKIFEEWESRNLC 360 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~~--~~~~a~~~~~~~~~~~~~ 360 (485)
+.-.+...|-..|++.+|...|-+.. ++...|+.| ...+ +.-.|-.+|++. |.
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAq--------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~- 1036 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQ--------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG- 1036 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-
Confidence 66677888888888888888887432 122223222 2222 233334444432 11
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHH--------HHHcCCC--CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHh---
Q 011472 361 HDIRIPNHLIDAYCRRGLLHKAETLIYK--------AQLRGTE--PNVRTWYLMATGYLQNNQSEKGVEAMKKALVL--- 427 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 427 (485)
-+..-+..|-+.|.+.+|+++--+ ++...+. .|+...+.-.+-|+...++++|..++-.+.+.
T Consensus 1037 ----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1037 ----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred ----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 122344567778887777765321 2222232 34666666666777777788877776554442
Q ss_pred ------------------hccCCCCccCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 011472 428 ------------------LEAGTRWKPSK----ECLAACLGYYKKERDIEGADYFIKL 463 (485)
Q Consensus 428 ------------------~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (485)
+.....-.|+. ..+..+...|.++|.+..|-+-|.+
T Consensus 1113 lqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1113 LQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 11222223333 3456667788899998887655543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=6.8e-06 Score=68.49 Aligned_cols=157 Identities=11% Similarity=-0.024 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG 377 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (485)
..+-..+...|+-+....+........+.|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3334444444444444444443333333333334445555555555555555555555432 235555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHH
Q 011472 378 LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGA 457 (485)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 457 (485)
+.+.|..-|.+..+... -++..++.+...+.-.|+.+.|..++..... .-.-|..+-..+..+....|++++|
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHHH
Confidence 55555555555554321 1244445555555555555555555555544 2122444445555555555555555
Q ss_pred HHHHH
Q 011472 458 DYFIK 462 (485)
Q Consensus 458 ~~~~~ 462 (485)
..+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 55443
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=9e-06 Score=80.53 Aligned_cols=209 Identities=13% Similarity=0.097 Sum_probs=154.2
Q ss_pred HHHHHhcCChHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc
Q 011472 229 LSACAAASDGEGI-DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC 307 (485)
Q Consensus 229 l~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (485)
=.+.+..|..++| .+++.++. + ++..........+++.-+...... .+.+..++..|.....+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~ 99 (694)
T PRK15179 35 EAALAEPGESEEAGRELLQQAR-Q------------VLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAA 99 (694)
T ss_pred HHHhcCcccchhHHHHHHHHHH-H------------HHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHc
Confidence 3355566666655 45555555 2 344444444444444444444443 445568899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 011472 308 GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387 (485)
Q Consensus 308 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 387 (485)
|.+++|..+++....-.+.+......+...+.+.+++++|....++..+..+. +......+..++.+.|++++|..+|+
T Consensus 100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999888888888888999999999999999999999999987554 56667788888999999999999999
Q ss_pred HHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 388 KAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 388 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
++...+ |+ ..++..+..++-..|+.++|...|+++++ ...|-...|+.++ ++...-..+++++.-
T Consensus 179 ~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 179 RLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLD------AIGDGARKLTRRL------VDLNADLAALRRLGV 244 (694)
T ss_pred HHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hhCcchHHHHHHH------HHHHHHHHHHHHcCc
Confidence 999843 44 78888899999999999999999999998 4555555555543 333444555666544
Q ss_pred C
Q 011472 467 K 467 (485)
Q Consensus 467 ~ 467 (485)
.
T Consensus 245 ~ 245 (694)
T PRK15179 245 E 245 (694)
T ss_pred c
Confidence 3
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=5.5e-05 Score=74.40 Aligned_cols=360 Identities=13% Similarity=-0.030 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQ 177 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 177 (485)
...|+..|-+..+.. +.-...+.++...|+..-+...|.+.|++..+.++ +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555543 23456778888888887788889999998888764 466788888899999999999888433
Q ss_pred HHhCCCC-CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 011472 178 MRDRGLV-KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL 256 (485)
Q Consensus 178 m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 256 (485)
.-+.... .-...|....-.|...++...|+.-|+......++ |...|..+..+|...|.+..|.++|++.. ...+ .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs-~LrP-~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS-LLRP-L 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH-hcCc-H
Confidence 3222110 01122333444566778888888888888775443 67788888899999999999999998887 3332 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh-----ccCCcchhHHHHHHHHHhcCCHHHHHHHHHH--------Hhhc
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLM-----MHNKFSRAYDFVITQYAACGNKDDVLRVWKR--------YKQN 323 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~ 323 (485)
+...---.....+..|.+.+|+..+....... ....-..++..+...+.-.|-..++...++. +.+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222233344567788888888877765541 0111122333333333333333333333331 1111
Q ss_pred CCCCcccHHHHHHHH-----------------------HhcCCH---H---HHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 011472 324 LKVYNRGYICVISSL-----------------------LKFDGM---E---SAEKIFEEWESRNLCHDIRIPNHLIDAYC 374 (485)
Q Consensus 324 ~~~~~~~~~~li~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (485)
...+...|..+.++| ...+.. + .+.+.+-.-.+ ...+..+|.-++..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHH
Confidence 111222222222221 111111 1 11111111111 1223455555555444
Q ss_pred H----c----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHH
Q 011472 375 R----R----GLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLG 446 (485)
Q Consensus 375 ~----~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 446 (485)
+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+... ..+-...+|..+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~------sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF------SEPTCHCQWLNLGV 858 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh------ccccchhheeccce
Confidence 3 1 22346777777776642 2367777777655 555777777777766654 33446677877777
Q ss_pred HHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 447 YYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
.+.+..|++.|...|.+.+...|.+..
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~nl~ 885 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPLNLV 885 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCchhhH
Confidence 788888888888888888887775443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.65 E-value=2.6e-05 Score=78.21 Aligned_cols=216 Identities=13% Similarity=0.044 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC----------
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL---------- 149 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 149 (485)
+.+...+..|+..+...+++++|.++.+...+.. |-.+..+.+....+.+.++.+++..+ .+....
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 4566778899999989999999999999777764 34445555555566666666665554 222221
Q ss_pred ----------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 011472 150 ----------KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID 219 (485)
Q Consensus 150 ----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 219 (485)
-+..++..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... +.++|.+++.+....-+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i- 180 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI- 180 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH-
Confidence 12245566777777778888888888888877644 777788888888777 88888888777765411
Q ss_pred CCcchHHHHHHHH-----HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcc
Q 011472 220 CDKYTFSILLSAC-----AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS 294 (485)
Q Consensus 220 p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 294 (485)
+..-|+.+...+ ....+++.-..+.+.+....+..--..++-.+-..|...+++++++.+|+.+.+. .+.+.
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~ 257 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNN 257 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcch
Confidence 111111111111 1122333334444444422233233344444555666666677777777766665 44455
Q ss_pred hhHHHHHHHHH
Q 011472 295 RAYDFVITQYA 305 (485)
Q Consensus 295 ~~~~~l~~~~~ 305 (485)
.+..-++.+|.
T Consensus 258 ~a~~~l~~~y~ 268 (906)
T PRK14720 258 KAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHH
Confidence 55666665554
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=2.5e-06 Score=67.33 Aligned_cols=119 Identities=11% Similarity=-0.083 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 011472 349 KIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLL 428 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 428 (485)
.++++..+. .|+ .+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+++..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 445555543 222 344566777778888888888888777432 2577777777788888888888888888885
Q ss_pred ccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHH
Q 011472 429 EAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 429 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 478 (485)
.-+.+...+..+..++...|+.++|+..|++..+..|.++..+...
T Consensus 87 ----l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 87 ----LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred ----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3344667777777788888888888888888888777666655444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.6e-05 Score=66.25 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=75.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCC
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDG 343 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 343 (485)
+-..+...|+-+....+....... .+.+.......+....+.|++..|+..+++.....++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 344444444444444444443322 223333344455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHH
Q 011472 344 MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
.+.|..-|.+..+.... +....+-+.-.|.-.|+.+.|..++......+.. |...-..+.......|+++.|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555544222 3344455555555555555555555555543321 3444444444555555555555544
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=6.2e-05 Score=71.63 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
.+......|.+|+.+++-+..... -..-|..+.+.|...|+++.|+++|-+. ..++--|.+|.+.|+++.
T Consensus 740 eaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 344445556666666553332221 2223566666777777777777776542 234456667777777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFI 461 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (485)
|.++-.+... .......|-.-..-+-.+|++.+|.++|-..- .|+ ..|..|-+.|..++.+++.
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~---------~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG---------EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---------Cch-----HHHHHHHhhCcchHHHHHH
Confidence 7666554432 22334455555555666677777776664432 243 2345667777777777666
Q ss_pred HHH
Q 011472 462 KLL 464 (485)
Q Consensus 462 ~~~ 464 (485)
++-
T Consensus 874 ~k~ 876 (1636)
T KOG3616|consen 874 EKH 876 (1636)
T ss_pred HHh
Confidence 553
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.8e-05 Score=66.03 Aligned_cols=261 Identities=15% Similarity=0.071 Sum_probs=162.5
Q ss_pred CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 011472 185 KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATA 264 (485)
Q Consensus 185 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 264 (485)
|+...|+ ++-+.-.|.+..++..-...... +-+...-.-+-++|...|+.... ..+++ . +-.|.......+
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~-~-~~~~~lqAvr~~ 78 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIK-E-GKATPLQAVRLL 78 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccc-c-ccCChHHHHHHH
Confidence 3333443 34444567777766655544332 12333344456677777775533 23333 2 223444544444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCH
Q 011472 265 ASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGM 344 (485)
Q Consensus 265 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 344 (485)
......-++.++-+.-+.+.........+......-...|++.|++++|++.... ..+......=+..+.+..+.
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444333322333323344445677888999999888764 12333344445666778888
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHH
Q 011472 345 ESAEKIFEEWESRNLCHDIRIPNHLIDAYCR----RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEA 420 (485)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 420 (485)
+.|.+.++.|.+.. +..+.+.|..++.+ .+.+..|.-+|++|.++ ..|+..+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 99999999998752 45667777777665 45688899999999874 568888888888889999999999999
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhH-HHHHHHHHhcCCC
Q 011472 421 MKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEG-ADYFIKLLTGKEI 469 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 469 (485)
+++++. ...-++.++..++-.-...|...+ ..+.+.+++...|
T Consensus 230 L~eaL~------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 230 LEEALD------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHh------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 999987 445567777777766666666544 4556667666555
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.0005 Score=63.44 Aligned_cols=354 Identities=12% Similarity=0.083 Sum_probs=214.1
Q ss_pred CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 011472 116 VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMM 194 (485)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 194 (485)
|.+.+.+..+++-+... .++++++.++++....|+ ...|..-+..-...++++....+|.+....-+ +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 46777888888777655 999999999999998876 67899999999999999999999999876533 566676666
Q ss_pred HHHHH-cCChh----hHHHHHHHHHHc-CCCCCc-chHHHHHHH---------HHhcCChHHHHHHHHHHHhcCCCCCCH
Q 011472 195 NVYYQ-TGNYK----KLDSLMHEMEEK-GIDCDK-YTFSILLSA---------CAAASDGEGIDKIVAMMEADRGVVLDW 258 (485)
Q Consensus 195 ~~~~~-~~~~~----~a~~~~~~m~~~-g~~p~~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 258 (485)
..-.+ .++.. ...+.|+-.... |..+-. ..|+..+.- +....+++...++|+++. ...+ .+.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral-~tPm-~nl 171 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL-VTPM-HNL 171 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh-cCcc-ccH
Confidence 53322 23333 334445554443 544433 244544433 233445677889999998 4333 221
Q ss_pred -HHHH------HHHHHH-------HhcCChHHHHHHHHHHHHh--hccC------C-cc-------hhHHHHHHH-----
Q 011472 259 -TVYA------TAASGY-------VKAGLSDKALAVLRKSEVL--MMHN------K-FS-------RAYDFVITQ----- 303 (485)
Q Consensus 259 -~~~~------~l~~~~-------~~~g~~~~A~~~~~~~~~~--~~~~------~-~~-------~~~~~l~~~----- 303 (485)
..|+ .-|+.. -+...+..|.++++++... |... | .+ ..|..+|..
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1111 111111 1223455566666654433 1000 0 00 002112111
Q ss_pred --------------------------------------------HHhcCC-------HHHHHHHHHHHhh-cCCCCcccH
Q 011472 304 --------------------------------------------YAACGN-------KDDVLRVWKRYKQ-NLKVYNRGY 331 (485)
Q Consensus 304 --------------------------------------------~~~~~~-------~~~a~~~~~~~~~-~~~~~~~~~ 331 (485)
+...|+ -+++..+++.... ...-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1222333331111 111122222
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Q 011472 332 ICVISSLLKFD---GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP-NVRTWYLMATG 407 (485)
Q Consensus 332 ~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~ 407 (485)
..+.+.-...- ..+....+++++...-..--..+|..++..-.+..-+..|..+|.+..+.+..+ ++..+++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 22222111111 245555666666644222223567788888888888999999999999988777 67888888887
Q ss_pred HhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC---CHHHHHHHHHH
Q 011472 408 YLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII---SADLQDRLLNN 481 (485)
Q Consensus 408 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 481 (485)
||. ++.+-|.++|+--++ .+..++.--...++-+...++-..+..+|++..+.+.+ +..+|..++.|
T Consensus 412 ~cs-kD~~~AfrIFeLGLk------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLK------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hhc-CChhHHHHHHHHHHH------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 775 678899999999887 55555566667788889999999999999999998542 44578887744
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=7.4e-05 Score=72.04 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=132.9
Q ss_pred CChhHHHHHH--HHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------CCC
Q 011472 117 LTPADVAIRL--DLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDR-G--------LVK 185 (485)
Q Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p 185 (485)
.++.+...++ ..|...|+.|.|.+-.+.+. +..+|..+.+.|.+..+++-|.-.+-.|... | -.|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 3444444443 34566777777777666655 3567788888888777777776666655421 1 112
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAA 265 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 265 (485)
+ .+-.-+.-.....|.+++|+.+|.+.+.. ..|=..|...|.|++|.++-+.-- +.. =..||....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-RiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RIH---LRNTYYNYA 865 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-cee---hhhhHHHHH
Confidence 2 22222333345667777888877777653 234445666777777777654432 212 223444455
Q ss_pred HHHHhcCChHHHHHHHHHH----------HHh--------hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 011472 266 SGYVKAGLSDKALAVLRKS----------EVL--------MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY 327 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~----------~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (485)
..+-..++.+.|++.|++. ... .....+...|.-..+..-..|+.+.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 5555666777777776652 111 00112234455555555667777777777764432
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 011472 328 NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389 (485)
Q Consensus 328 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 389 (485)
|.++++..|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|...|.+.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444555555556666555554432 13333444556666666666666555443
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.8e-05 Score=64.14 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=69.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----c
Q 011472 160 NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA----A 235 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 235 (485)
..|...|++++|++...... +......=+..+.+..+++-|.+.+++|.+. . +..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccc
Confidence 34555566666655554411 2222222233344555556666666665542 1 33344444444333 2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 236 SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
+....|.-+|++|. + ..+|++.+.+-...++...|++++|..+++....+ .+.+..+...++-+-...|...+
T Consensus 187 ek~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChH
Confidence 34555666666665 2 23455555555666666666666666666666555 33333454444444444554433
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=4.2e-05 Score=63.39 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHH
Q 011472 62 DPNDSMVPLLDQWVE---EG-RPLDMEQ-LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIE 136 (485)
Q Consensus 62 ~~~~~~~~~~~~~~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (485)
++++ +.++..++.. .| ..++..+ |..++-+....|+.+.|...++.+.++ +|-++.....-...+-..|.++
T Consensus 27 nsee-vv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 27 NSEE-VVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred CHHH-HHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 3444 5556666552 24 5566655 677778888899999999999998876 4667777777677788899999
Q ss_pred HHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 137 QAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 137 ~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
+|.++++.+.+.+|+ ..++-.=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-+++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999988775 556666666667778888898888888776 445999999999999999999999999999986
Q ss_pred cCCCCCcc-hHHHHHHHHHhcC---ChHHHHHHHHHHH
Q 011472 216 KGIDCDKY-TFSILLSACAAAS---DGEGIDKIVAMME 249 (485)
Q Consensus 216 ~g~~p~~~-~~~~ll~~~~~~g---~~~~a~~~~~~~~ 249 (485)
. .|... .+..+...+...| +.+.+.++|.+..
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 45444 3444444444333 5667888888888
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=0.00013 Score=72.01 Aligned_cols=160 Identities=9% Similarity=-0.007 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-h--HHHHHHHH
Q 011472 84 EQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-P--SVYIALLN 160 (485)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~ll~ 160 (485)
..|..|...|....+...|...|+...+.+ +-+........+.|++..+++.|..+.-...+..|- . .-|-...-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 467888888888888888999999887754 234455566688999999999999985444433221 1 22333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHH--HHHHHhcCCh
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL--LSACAAASDG 238 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~g~~ 238 (485)
.|.+.++...|+.-|+...+..++ |...|..++.+|...|++..|.++|.+... +.|+. +|... ....+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhH
Confidence 678889999999999998887665 888999999999999999999999988876 34443 22222 2245677888
Q ss_pred HHHHHHHHHHH
Q 011472 239 EGIDKIVAMME 249 (485)
Q Consensus 239 ~~a~~~~~~~~ 249 (485)
.++...+....
T Consensus 647 keald~l~~ii 657 (1238)
T KOG1127|consen 647 KEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHH
Confidence 88888877765
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=6.8e-05 Score=68.22 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=96.4
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCC
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDCDKY-TFSILLSACAAASDGEGIDKIVAMMEADRGVVLD-WTVYATAASGYVKAGL 273 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 273 (485)
.+...|++++|++.++.++.. .|+.. ........+.+.++.++|.+.++.+. ... |+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC--CCccHHHHHHHHHHHhcCC
Confidence 345677788888888887764 34443 34444557777888888888888777 322 33 4455567777788888
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
+.+|+.+++..... .+.+...|..|.++|...|+..++..-.... +...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------YALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------HHhCCCHHHHHHHHHH
Confidence 88888888777766 5566678888888888888777776665531 2335677777777776
Q ss_pred HHhcCCCCCcccH
Q 011472 354 WESRNLCHDIRIP 366 (485)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (485)
..+. .+++...|
T Consensus 451 A~~~-~~~~~~~~ 462 (484)
T COG4783 451 ASQQ-VKLGFPDW 462 (484)
T ss_pred HHHh-ccCCcHHH
Confidence 6655 33344443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=9.6e-06 Score=63.98 Aligned_cols=84 Identities=8% Similarity=-0.020 Sum_probs=33.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
.+...|++++|...|+... ...+ .+...|..+..++...|++++|...|+..... .+.+..++..+..++...|++
T Consensus 33 ~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLV-MAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCH
Confidence 3334444444444444443 2222 23333344444444444444444444444433 223333444444444444444
Q ss_pred HHHHHHHH
Q 011472 311 DDVLRVWK 318 (485)
Q Consensus 311 ~~a~~~~~ 318 (485)
++|...|+
T Consensus 109 ~eAi~~~~ 116 (144)
T PRK15359 109 GLAREAFQ 116 (144)
T ss_pred HHHHHHHH
Confidence 44444444
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=6.1e-05 Score=68.54 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAET 384 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 384 (485)
...|++++|+..++.+....+.|+.......+.+.+.|+.++|.+.++.+....+. .....-.+..+|.+.|++.+|..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 33444444444444444444444444444444444444444444444444443111 12333334444444444444444
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHH
Q 011472 385 LIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 385 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
+++....... -|+..|..|..+|...|+..++....
T Consensus 396 ~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHH
Confidence 4444444321 13444444444444444444444333
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00021 Score=59.42 Aligned_cols=188 Identities=14% Similarity=0.092 Sum_probs=138.4
Q ss_pred hcCChHHHHHHHHHHHhcC--C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC
Q 011472 234 AASDGEGIDKIVAMMEADR--G-VVLDW-TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN 309 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~--~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (485)
...+.++..+++.++.... | ..++. ..|-.++-+....|+.+.|..+++++...- |.+..+-..-...+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 3457888888888876322 2 33443 445566677778899999999999988873 3332333333344566889
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 011472 310 KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389 (485)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 389 (485)
+++|+++++.+....+.|..++---+...-..|+--+|.+-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999887777888888887777777888887888888887776 5558899999999999999999999999998
Q ss_pred HHcCCCCc-HHHHHHHHHHHhccC---CHHHHHHHHHHHHH
Q 011472 390 QLRGTEPN-VRTWYLMATGYLQNN---QSEKGVEAMKKALV 426 (485)
Q Consensus 390 ~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 426 (485)
.-. .|- +..+..+...+.-.| +.+.|.++|.+.++
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 873 354 455555665544333 56778889988886
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=1.2e-05 Score=63.09 Aligned_cols=98 Identities=14% Similarity=-0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
...+...+...|++++|...|+.+...+. .+...|..+...+...|++++|..+++.+++ ..+.+...+..+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~la 92 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAA------LDPDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCChHHHHHHH
Confidence 44455555566666666666666655431 1455555555666666666666666666554 2233445555555
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
..+...|++++|...+++..+..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5666666666666666666665553
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=1.3e-05 Score=62.88 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=7.9
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 011472 265 ASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 265 ~~~~~~~g~~~~A~~~~~~~ 284 (485)
...+...|++++|.+.|+.+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~ 43 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLL 43 (135)
T ss_pred HHHHHHcccHHHHHHHHHHH
Confidence 33333334444444444333
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0042 Score=61.13 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (485)
+++..|+...+.+.++. |..+.+...-.-...+.|+.++|..+++......+ |..+...+-.+|...++.++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45555555555555543 12222222223334455666666555555444332 3445555555555566666666666
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 176 QQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 176 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
++..... |+......+..+|.+.+.+.+-
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 4444444555555555554443
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.8e-06 Score=49.34 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (485)
+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444444
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2e-06 Score=49.07 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKT 187 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 187 (485)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.7e-06 Score=48.14 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC 220 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 220 (485)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=7.6e-05 Score=68.50 Aligned_cols=123 Identities=19% Similarity=0.122 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
...++..+...++++.|..+++++.+.. +.....+++.+...++-.+|.+++++..+... -+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3455566667788888999998888763 33555677888888888888888888886432 256666666777888
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 411 NNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
.++++.|+++.+++.+ ..| +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8899999999999886 355 45688899999999999999988888765
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=6.5e-05 Score=59.53 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLP----SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
..+...|++++|...|+.+....|+. .....|...+...|++++|+..++....... ....+.....++.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence 33344444444444444444433322 1222233444444444444444433222111 12233334444444444
Q ss_pred hhhHHHHHH
Q 011472 203 YKKLDSLMH 211 (485)
Q Consensus 203 ~~~a~~~~~ 211 (485)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.5e-06 Score=47.67 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 185 (485)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=8.8e-05 Score=68.08 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
...|+..+...++++.|+.+|+++.+.. | .....+++.+...++-.+|.+++++.++.. +-+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 4455566666778888888888887763 3 344557777777777778888887777542 2244445555566777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
.++.+.|.++.+++. +..+ -+-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av-~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAV-ELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHH-HhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777788888777777 3222 344577777778888888887777777653
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.16 E-value=5.1e-05 Score=69.92 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=95.8
Q ss_pred hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH
Q 011472 322 QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR--NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVR 399 (485)
Q Consensus 322 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 399 (485)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+++..+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 444556666777788888888888888888887755 222334566788888888888888888888888888888888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhc
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKE 451 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 451 (485)
++|.|++.+.+.|++..|.++...|..+ +...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-----e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ-----EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888775 6666667776666666665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00017 Score=57.16 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCc--chHHHHH
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKK---TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDK--YTFSILL 229 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 229 (485)
|..++..+ ..++...+...++.+...... + ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444433 255556665556665554211 1 111222334455556666666666666554422211 1222344
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRK 283 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 283 (485)
..+...|++++|+..++... ... .....+....++|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-Ccc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555666666666665443 211 2333444555666666666666665554
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=0.00013 Score=55.66 Aligned_cols=107 Identities=10% Similarity=-0.016 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKEC 440 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 440 (485)
++..++..+.+.|++++|...|.++.+.. |+ ...+..+...+.+.|+++.|.+.|+.+... .++.......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK---YPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---CCCCCcccHH
Confidence 34445556666677777777776666532 22 234455666677777777777777776652 0011111345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHH
Q 011472 441 LAACLGYYKKERDIEGADYFIKLLTGKEIISADLQD 476 (485)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 476 (485)
+..+..++.+.|+.++|...++++.+..|.++....
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 555666666777777777777777776665554443
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.07 E-value=4.6e-05 Score=54.77 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHHcC--------ChhhHHHHHHHHHHcCCCCCcchHH
Q 011472 156 IALLNAYACAKSAEKAEIIMQQMRDRGL-VKKTIDYNSMMNVYYQTG--------NYKKLDSLMHEMEEKGIDCDKYTFS 226 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (485)
...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455556666999999999999999999 899999999998877653 2446778888888888999999999
Q ss_pred HHHHHHHh
Q 011472 227 ILLSACAA 234 (485)
Q Consensus 227 ~ll~~~~~ 234 (485)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=0.00016 Score=55.01 Aligned_cols=97 Identities=19% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----hHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNF-VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL----PSVYIALL 159 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~ll 159 (485)
++..+...+.+.|++++|.+.|+.+.+...- +..+.....+..++.+.|+++.|...|+.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444455555555555555555555543210 111223333344444444444444444444443322 22333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011472 160 NAYACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~ 181 (485)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00016 Score=52.24 Aligned_cols=96 Identities=20% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+ ..+.+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALE------LDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCcchhHHHHHH
Confidence 34455566666777777777777665421 1235556666666667777777777777665 2233445666666
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
..+...|++++|...++...+..
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccC
Confidence 66777777777777777666544
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.97 E-value=0.00016 Score=64.15 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=78.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR-RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (485)
+|..++....+.+..+.|..+|.++.+.+. .+..+|......-.+ .++.+.|.++|+...+. ...+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 456666666666677777777777764321 233344444333223 45555577777777654 334566677777777
Q ss_pred hccCCHHHHHHHHHHHHHhhccCCCCccCH---HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 409 LQNNQSEKGVEAMKKALVLLEAGTRWKPSK---ECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 409 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
...|+.+.|..+|++++. .+.++. ..|...+..-.+.|+.+.+.++.+++.+.-+
T Consensus 81 ~~~~d~~~aR~lfer~i~------~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS------SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC------TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 777777777777777764 333222 4677777777777777777777777766543
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0023 Score=57.06 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=62.0
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhc----CCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-----HHH
Q 011472 332 ICVISSLLKF-DGMESAEKIFEEWESR----NLC-HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-----VRT 400 (485)
Q Consensus 332 ~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~ 400 (485)
..+...|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|..+|++....-...+ ...
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3444555555 6677777666666532 100 0022344555666666777777777766655332211 111
Q ss_pred HH-HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 401 WY-LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS--KECLAACLGYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 401 ~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
+- ..+-++...|++..|.+.+++.... .+++..+ ......|+.+ .+.||.+.....+.+.-.....++
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQ---DPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHHcccCccHH
Confidence 21 1233455566666666666666542 1112111 1222333333 455666666555555555444443
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00017 Score=52.11 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=7.3
Q ss_pred HHHhcCChHHHHHHHHHH
Q 011472 267 GYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~ 284 (485)
.+...|++++|...++++
T Consensus 9 ~~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 9 LYYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHHhcHHHHHHHHHHH
Confidence 333344444444444443
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00014 Score=67.02 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHH
Q 011472 117 LTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL----KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS 192 (485)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 192 (485)
.++-.+...++.+....+++.+..++-+..... .-..+..++++.|.+.|..++++.++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 344444444444444455555555554444331 1133445777777777777777777777777777777777777
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 011472 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 235 (485)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776665555666666555555554
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.89 E-value=0.00011 Score=60.01 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC------------
Q 011472 139 ASYFNCVPEKLKLPSVYIALLNAYACA-----KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG------------ 201 (485)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 201 (485)
...|+.......+..+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 344555544446777888888887753 667777888888888888888888988888764421
Q ss_pred ----ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 202 ----NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 202 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 12344555555555555555555555555554443
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.018 Score=55.19 Aligned_cols=349 Identities=9% Similarity=0.045 Sum_probs=174.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHH------HHHHHHHhhCCHHHHHHHHHhhhhcCCChH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVA------IRLDLIAKVQGIEQAASYFNCVPEKLKLPS 153 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 153 (485)
.|.+..|..+.......-.++.|...|-+..+-.++.+-...-. .....-+-.|++++|+++|-++..+ |
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr--D-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR--D-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--h--
Confidence 57778888888777777777777777665544322211111100 1123334467788888887766553 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGL--VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 231 (485)
..+..+.+.|++-...+++..-- .+. +.-...|+.+...+.....|++|.+.|..-... ...+.+
T Consensus 765 ---LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 765 ---LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred ---hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 24455666677766665553211 111 011345777777777777777777777654321 234555
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKD 311 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (485)
+.+..++++-+.+-..+. .+....-.+..++.+.|.-++|.+.|-+-. .| .+.+..|...++|.
T Consensus 832 ly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHH
Confidence 555555555555544443 233334456677777777777776665421 11 23455666677777
Q ss_pred HHHHHHHHHhhcCCCCccc--------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCccc-----HH-H
Q 011472 312 DVLRVWKRYKQNLKVYNRG--------------YICVISSLLKFDGMESAEKIFEEWESRNL---CHDIRI-----PN-H 368 (485)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~-----~~-~ 368 (485)
+|.++-+... -|...+ ..--|....+.|+.-.|-+++.+|.+... .|-... .. .
T Consensus 896 ~avelaq~~~---l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 896 EAVELAQRFQ---LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHHhcc---chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 7766655211 011111 11123344455555555555555543211 111111 01 1
Q ss_pred HHHHHH----------HcCCHHHHHHHHHHHHHc-------CCCCcHHHHHH--HHHHHhccCCHHHHHHHHHHHHHhhc
Q 011472 369 LIDAYC----------RRGLLHKAETLIYKAQLR-------GTEPNVRTWYL--MATGYLQNNQSEKGVEAMKKALVLLE 429 (485)
Q Consensus 369 l~~~~~----------~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~ 429 (485)
|+.-+. +.|..++|..+++...-. +.--....|.. |..-....|..+.|++.--.+.+.
T Consensus 973 LvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DY-- 1050 (1189)
T KOG2041|consen 973 LVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDY-- 1050 (1189)
T ss_pred HHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccH--
Confidence 111111 234555555544432210 00111233333 333345566777766654444332
Q ss_pred cCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 430 AGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 430 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
..+-|....|..+.-+-+....+.-.-+.|-++....
T Consensus 1051 --Ed~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1051 --EDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred --hhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Confidence 4566777777777666555555555555555554443
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.1e-05 Score=43.22 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRG 182 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 182 (485)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.84 E-value=0.019 Score=51.21 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH----HhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHH
Q 011472 96 YKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI----AKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEK 170 (485)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 170 (485)
.|+++.|.+-|+.|.. +|++...-++++ -+.|..+.|..+-++.....|. ...+...+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 3555555555555554 233333222222 2445555555555555444443 3445555555555555555
Q ss_pred HHHHHHHHH
Q 011472 171 AEIIMQQMR 179 (485)
Q Consensus 171 a~~~~~~m~ 179 (485)
|+++++.-+
T Consensus 207 AlkLvd~~~ 215 (531)
T COG3898 207 ALKLVDAQR 215 (531)
T ss_pred HHHHHHHHH
Confidence 555555443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=8.4e-05 Score=52.48 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH-HHHHHHHHHHHhcCC
Q 011472 376 RGLLHKAETLIYKAQLRGTE-PNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK-ECLAACLGYYKKERD 453 (485)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 453 (485)
.|+++.|..+++++.+.... |+...+-.+..+|.+.|++++|.+++++ . ...|.. .....+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-------~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-------KLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-------THHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-------CCCCCCHHHHHHHHHHHHHhCC
Confidence 46777888888887765431 2344455567778888888888888877 2 233433 444445667778888
Q ss_pred HhHHHHHHHH
Q 011472 454 IEGADYFIKL 463 (485)
Q Consensus 454 ~~~a~~~~~~ 463 (485)
+++|++++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888877765
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0046 Score=53.50 Aligned_cols=175 Identities=11% Similarity=0.039 Sum_probs=85.9
Q ss_pred HHHHHHhhCCHHHHHHHHHhhhhcCCChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH-
Q 011472 125 RLDLIAKVQGIEQAASYFNCVPEKLKLPSV----YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ- 199 (485)
Q Consensus 125 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 199 (485)
....+...|++++|.+.|+++....|+... .-.++.+|.+.+++++|...|++..+..+.-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344445566666666666666665554321 234456666777777777777777665332222223222332221
Q ss_pred -c---------------CC---hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 011472 200 -T---------------GN---YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTV 260 (485)
Q Consensus 200 -~---------------~~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 260 (485)
. .+ ..+|++.|+++++. -|+. .-..+|...+..+. . .+ -. .
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~-~-~l--a~-~ 177 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLK-D-RL--AK-Y 177 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHH-H-HH--HH-H
Confidence 1 01 12333444444432 1222 22233333332222 0 00 00 0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 261 YATAASGYVKAGLSDKALAVLRKSEVLMM-HNKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
--.+..-|.+.|.+..|..-++.+.+.-+ .+....+...++.+|...|..++|..+...
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 01355667777777777777777776621 222234555666777777777777666553
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.82 E-value=0.0011 Score=51.63 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
...+...+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 344555556677777777777776665433 445556666666677777777777777766543 246666666777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 011472 411 NNQSEKGVEAMKKALV 426 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~ 426 (485)
.|+.+.|.+.|+.++.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777665
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=3.2e-05 Score=42.48 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=6.4e-05 Score=53.09 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHH
Q 011472 236 SDGEGIDKIVAMMEADRGV-VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (485)
|+++.|+.+++++. +... .++...+-.+..+|.+.|++++|+.+++. .+.. +.+......+..++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44555555555554 2222 11222333345555555555555555544 2111 111122223344555555555555
Q ss_pred HHHH
Q 011472 315 RVWK 318 (485)
Q Consensus 315 ~~~~ 318 (485)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00084 Score=61.90 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccC
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP-NVRTWYLMATGYLQNN 412 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 412 (485)
-...+...|+++.|...|+++++.... +...|..+..+|.+.|++++|...++++++.. | +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 345566778888888888888876544 56677777888888888888888888888753 4 4667777888888888
Q ss_pred CHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 413 QSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
++++|+..|+++++. .|+......++
T Consensus 85 ~~~eA~~~~~~al~l-------~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASL-------APGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHh-------CCCCHHHHHHH
Confidence 888888888888853 55544444443
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.80 E-value=0.00091 Score=52.15 Aligned_cols=91 Identities=10% Similarity=-0.092 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCC
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDG 343 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 343 (485)
+...+...|++++|..+|+-+... .+.+..-|..|..++-..|++++|+..|.....-.+.|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 444445555555555555555544 333444555555555555555555555554444444455555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 011472 344 MESAEKIFEEWES 356 (485)
Q Consensus 344 ~~~a~~~~~~~~~ 356 (485)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00083 Score=61.95 Aligned_cols=86 Identities=7% Similarity=-0.045 Sum_probs=43.2
Q ss_pred HHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHH
Q 011472 129 IAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 207 (485)
+...|++++|...|+++....|+ ...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 33444555555555555444433 344444555555555555555555555544322 3444555555555555555555
Q ss_pred HHHHHHHH
Q 011472 208 SLMHEMEE 215 (485)
Q Consensus 208 ~~~~~m~~ 215 (485)
..|++.++
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00063 Score=49.09 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHhhccCCCCccCHH
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGT-EPNVRTWYLMATGYLQNN--------QSEKGVEAMKKALVLLEAGTRWKPSKE 439 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~p~~~ 439 (485)
.|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+.. +++|+..
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-----~lKP~~e 105 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-----KLKPNDE 105 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-----ccCCcHH
Confidence 34445555777777777777777777 677777777777665543 233567778888874 7888888
Q ss_pred HHHHHHHHHHh
Q 011472 440 CLAACLGYYKK 450 (485)
Q Consensus 440 ~~~~l~~~~~~ 450 (485)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.0015 Score=53.40 Aligned_cols=83 Identities=16% Similarity=0.031 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLD--WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVIT 302 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (485)
+..+...+...|++++|...|++.. .....+. ...+..+..++.+.|++++|...+++.... .+.+...+..+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 3444444555555555555555554 2221111 234444555555555555555555555443 2222334444444
Q ss_pred HHHhcCCH
Q 011472 303 QYAACGNK 310 (485)
Q Consensus 303 ~~~~~~~~ 310 (485)
++...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 44444443
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.00092 Score=59.39 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG-YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVIT 302 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (485)
+|..+++...+.+..+.|..+|.+.. +.+. .+..+|...... |...++.+.|.++|+...+. .+.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR-KDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34444555555555555555555554 2221 222222222222 12233444455555555544 3333444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 303 QYAACGNKDDVLRVWKRYKQNLKVYN---RGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
.+...++.+.|..+|+.......++. ..|...++.=.+.|+++.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554333332222 2445555555555555555555555544
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0029 Score=51.76 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 180 (485)
.+..+...+.+.|++++|...+++..+
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444555555555444444
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.00091 Score=54.55 Aligned_cols=60 Identities=7% Similarity=-0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 156 IALLNAYACAKSAEKAEIIMQQMRDRGLVK--KTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
..+...+...|++++|+..|++.......| ...+|..+...+...|++++|...++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334444444444444444443322111 112344444444444444444444444443
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.011 Score=53.13 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=27.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHh
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAAS--GYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 287 (485)
++.-.|+.++|..+--... +.+. .+... ..++ ++--.++.+.|...|++....
T Consensus 178 cl~~~~~~~~a~~ea~~il-kld~-~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDIL-KLDA-TNAEA--LYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhhcccchhHHHHHHHHH-hccc-chhHH--HHhcccccccccchHHHHHHHhhhhcc
Confidence 4555667776666655555 3222 22222 2222 233356667777777766655
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00089 Score=57.38 Aligned_cols=100 Identities=15% Similarity=0.001 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHH
Q 011472 301 ITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLH 380 (485)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (485)
..-..+.+++.+|+..|.....-.+-|.+-|..-..+|++.|.++.|.+-.+..+..... -...|..|..+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 344456677777777777666666667777777777777777777777766666654322 3456677777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHH
Q 011472 381 KAETLIYKAQLRGTEPNVRTWYL 403 (485)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~ 403 (485)
+|.+.|++.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 77777777766 4566555543
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0025 Score=61.58 Aligned_cols=66 Identities=17% Similarity=0.040 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
...|..+.......|++++|...++++++. .|+...|..+...+...|+.++|.+.+++....+|.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL-------EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 445555544455556666666666666642 455566666666666666666666666666666653
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.00069 Score=58.02 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=81.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCC
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQ 413 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 413 (485)
..-+.+.+++.+|...|.+.++..+. |.+.|.-=..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 34566778899999999998887544 677777778889999999999888888877 3455 6788888889999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHH
Q 011472 414 SEKGVEAMKKALVLLEAGTRWKPSKECLAACLGY 447 (485)
Q Consensus 414 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 447 (485)
+++|++.|++++ .+.|+-.+|..=+..
T Consensus 165 ~~~A~~aykKaL-------eldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKAL-------ELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhh-------ccCCCcHHHHHHHHH
Confidence 999999999888 468877777665544
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.031 Score=48.39 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+..-|.+.|.+..|+.-++.+++. -++.+........+..+|.+.|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~---Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRD---YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4456688899999999999999873 223333556777788899999999999887766543
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.018 Score=51.43 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHh----hccCCcchhHHHHHHHHHhc-CCHHHHHHHHHHHhhc----CCC--CcccHHHHHHHHHhc
Q 011472 273 LSDKALAVLRKSEVL----MMHNKFSRAYDFVITQYAAC-GNKDDVLRVWKRYKQN----LKV--YNRGYICVISSLLKF 341 (485)
Q Consensus 273 ~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~ 341 (485)
++++|.+.+++.... |.+..-...+..+...|... |+++.|++.|+....- ..+ -...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 566666665555443 11111123455555566666 6777777777643211 111 123455666667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIR------IPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
|++++|.++|+++.......+.. .+-..+-++...|++-.|...+++...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766543322211 122223345556777777777777665
No 178
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.64 E-value=0.048 Score=49.87 Aligned_cols=447 Identities=11% Similarity=0.036 Sum_probs=239.5
Q ss_pred CccchhhhhhhhhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCC
Q 011472 1 MKLVRLRTTLYNIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRP 80 (485)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
|..-|++.-+.+-......+++.+|-..|+++-.+...+...... .--..-+++++--. +.+. +...+.+..+. .
T Consensus 1 ~~qq~~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lke-Evl~grilnAffl~-nld~-Me~~l~~l~~~--~ 75 (549)
T PF07079_consen 1 MSQQRQYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKE-EVLGGRILNAFFLN-NLDL-MEKQLMELRQQ--F 75 (549)
T ss_pred CchHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH-HHHhhHHHHHHHHh-hHHH-HHHHHHHHHHh--c
Confidence 566777877888888889999999999999987555444311110 00122333333322 1222 33333333332 2
Q ss_pred CCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCCCCh----h--------HH-HHHHHHHHhhCCHHHHHHHHHhh
Q 011472 81 LDMEQLRIIIKKF--RLYKRFSHALQISMWMTKKSNFVLTP----A--------DV-AIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 81 ~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~----~--------~~-~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
| ...|-.+..++ -+.+.+.+|++.+.....+-....+| + .+ ...+..+...|++.+++.+++++
T Consensus 76 ~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 76 G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 2 22333333332 46788999999988777652111111 1 11 11256778999999999999998
Q ss_pred hhcC------CChHHHHHHHHHHHhc--------CCH-------HHHHHHHHHHHhC------CCCCCcchHHHHHHHHH
Q 011472 146 PEKL------KLPSVYIALLNAYACA--------KSA-------EKAEIIMQQMRDR------GLVKKTIDYNSMMNVYY 198 (485)
Q Consensus 146 ~~~~------~~~~~~~~ll~~~~~~--------~~~-------~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~ 198 (485)
...- .+..+|+.++-.+++. ... +.+.-...+|... .+-|-......++.-..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 7652 4678888866555542 111 1111111122111 11222222222222211
Q ss_pred Hc--CChhhHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhc
Q 011472 199 QT--GNYKKLDSLMHEMEEKGIDCDKY-TFSILLSACAAASDGEGIDKIVAMMEADRGVVL----DWTVYATAASGYVKA 271 (485)
Q Consensus 199 ~~--~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 271 (485)
-. .+..--.++++.-...-+.|+-. ....+...+.+ +.+++..+-+.+. ...+.+ -..++..++....+.
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia-~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIA-SSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11122222333332333445432 22333334433 6666666666655 332211 134566777777888
Q ss_pred CChHHHHHHHHHHHHhhccCCcchh------HHHHHHHHH-h---cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH---
Q 011472 272 GLSDKALAVLRKSEVLMMHNKFSRA------YDFVITQYA-A---CGNKDDVLRVWKRYKQNLKVYNRGYICVISSL--- 338 (485)
Q Consensus 272 g~~~~A~~~~~~~~~~~~~~~~~~~------~~~l~~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--- 338 (485)
++..+|...+.-+..- .|..... -..+-+..+ . ..+...-+.+|..+..-..........++.+.
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL 389 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 8888888877766543 2221111 111222222 1 11222233444433333222223333444443
Q ss_pred HhcCC-HHHHHHHHHHHHhcCCCCCcccHHHHH----HHHHH---cCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHH
Q 011472 339 LKFDG-MESAEKIFEEWESRNLCHDIRIPNHLI----DAYCR---RGLLHKAETLIYKAQLRGTEPN----VRTWYLMAT 406 (485)
Q Consensus 339 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~ 406 (485)
=+.|. -+.|..+++.+.+-.. -|..+-|.+. ..|.+ ...+.+-.++-+-+.+.|+.|- ...-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 23444 7888999988886522 2444433332 23433 3446666666677778888764 334455555
Q ss_pred H--HhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 407 G--YLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 407 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
+ +..+|++.++.-.-.-.. .+.|++.+|..+.-++....++++|..++..+.-
T Consensus 469 AEyLysqgey~kc~~ys~WL~-------~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT-------KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4 567899999886665555 5789999999999999999999999999998765
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00038 Score=46.76 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=38.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYI 156 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 156 (485)
.+.|++++|++.|+.+.+.. |-++.....+..++.+.|++++|..+++++....|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 35667777777777776654 34555666666667777777777777777766666643333
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0013 Score=53.63 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
++..+..++...|++++|+..+++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.072 Score=51.38 Aligned_cols=295 Identities=12% Similarity=0.048 Sum_probs=140.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC---hHHHHHHHHHHHhcCCHHHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL---PSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
|++++|.++|-++-+++ ..+....+.|++-...++++.-.....| ...|+.+...+.....|++|.+
T Consensus 748 g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776665443 4567777888888777776653322222 3567777777777777888877
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011472 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRG 253 (485)
Q Consensus 174 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 253 (485)
.|..-... ...+.++.+..++++-+.+-..+ +-|....-.+..++.+.|.-++|.+.|-+-.
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---- 879 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---- 879 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence 77653321 22444455544444444333332 2233444445555555555555555443222
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc----------cCCcchhHHHHHHHHHhcCCHHHHHHHHH-HHhh
Q 011472 254 VVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM----------HNKFSRAYDFVITQYAACGNKDDVLRVWK-RYKQ 322 (485)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~ 322 (485)
. |. ..+..|...++|.+|.++-+...-... ...+.. ..--|..+.+.|+.-.|-+++. +..+
T Consensus 880 ~-pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 880 L-PK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred C-cH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 1 11 133444455555555554443211000 000000 0111233344444434444333 2211
Q ss_pred ---cCCCCccc-HHHHHHHH---------------HhcCCHHHHHHHHHHHHhc--------CC-CCCcccHHHHHHHHH
Q 011472 323 ---NLKVYNRG-YICVISSL---------------LKFDGMESAEKIFEEWESR--------NL-CHDIRIPNHLIDAYC 374 (485)
Q Consensus 323 ---~~~~~~~~-~~~li~~~---------------~~~~~~~~a~~~~~~~~~~--------~~-~~~~~~~~~l~~~~~ 374 (485)
...|-... -..++.++ -..|..++|..+++...-. -. ......|-.|.+-..
T Consensus 953 e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql 1032 (1189)
T KOG2041|consen 953 EQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQL 1032 (1189)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11111110 00111111 1223444444433322110 00 112334445555566
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 375 RRGLLHKAETLIYKAQL-RGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..|.++.|.+.--.+.+ ..+-|....|..+.-+-+....+...-+.|-++..
T Consensus 1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 67888888875444432 12567788888877776666666555555555544
No 182
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.61 E-value=0.053 Score=49.50 Aligned_cols=374 Identities=11% Similarity=0.085 Sum_probs=215.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHH
Q 011472 78 GRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 78 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
..|.|+.+|..|+..+..++..++..+++++|... +|.-+.++...+..-...+++...+.+|.+.....-+...|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 35778899999999999999999999999999764 6777888888777777788899999999888776666677776
Q ss_pred HHHHHHhcC-----CH-HHHHHHHHHHH-hCCCCCC-cchHHHHHHHHH---HcCC------hhhHHHHHHHHHHcCCC-
Q 011472 158 LLNAYACAK-----SA-EKAEIIMQQMR-DRGLVKK-TIDYNSMMNVYY---QTGN------YKKLDSLMHEMEEKGID- 219 (485)
Q Consensus 158 ll~~~~~~~-----~~-~~a~~~~~~m~-~~~~~p~-~~~~~~l~~~~~---~~~~------~~~a~~~~~~m~~~g~~- 219 (485)
.+..-.+.+ +- ....+.|+-.. ..++.|- ...|+..+...- ..|. ++.....|.+|+.--+.
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 666544432 11 11122222222 2344442 223443333221 1122 22333333333321000
Q ss_pred -------------------------CCcchHHHHHHHHHhcCCh------------------------------------
Q 011472 220 -------------------------CDKYTFSILLSACAAASDG------------------------------------ 238 (485)
Q Consensus 220 -------------------------p~~~~~~~ll~~~~~~g~~------------------------------------ 238 (485)
-....|..--..|....++
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 0000010000000000000
Q ss_pred ----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC
Q 011472 239 ----------EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 239 ----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
....-++++.. . -+......|----.-+...++-+.|+.....-... .|. .-..+...|.-..
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~-~-y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~---sps--L~~~lse~yel~n 347 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQIL-D-YFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM---SPS--LTMFLSEYYELVN 347 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHH-H-HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC---CCc--hheeHHHHHhhcc
Confidence 00011111111 0 00011122222222233456666666666553221 121 1111222333333
Q ss_pred CHHHHHHHHHH--------Hh-------hcCC---------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011472 309 NKDDVLRVWKR--------YK-------QNLK---------------VYNRGYICVISSLLKFDGMESAEKIFEEWESRN 358 (485)
Q Consensus 309 ~~~~a~~~~~~--------~~-------~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 358 (485)
+-+.....|+. .. ++.. .-..+|...+....+..-++.|..+|-++.+.|
T Consensus 348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 33333332221 00 0110 112356677788888888999999999999998
Q ss_pred -CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc
Q 011472 359 -LCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTW-YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP 436 (485)
Q Consensus 359 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p 436 (485)
+.+++.++++++..++. |+...|..+|+--... -||...| +..+.-+...++-+.|..+|+..+. .+..
T Consensus 428 ~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~------r~~~ 498 (660)
T COG5107 428 IVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE------RLEK 498 (660)
T ss_pred CCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH------HHHH
Confidence 67889999999988774 6788999999876553 2565554 4566677888999999999998887 5555
Q ss_pred C--HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 437 S--KECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 437 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+ ...|..+|.--..-|+...+..+=++|.+.-|
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5 57899999999999999988888888777554
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0023 Score=61.73 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=58.5
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++.. +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-------L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN-------LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCchH
Confidence 45667777777777899999999999999855 7888899999999999999999999999985 46665554
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.051 Score=48.68 Aligned_cols=294 Identities=13% Similarity=0.050 Sum_probs=165.2
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHHcCChhhHHHHHHHHHHcCCCCCcch--HHH
Q 011472 154 VYIALLNAYA--CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNV--YYQTGNYKKLDSLMHEMEEKGIDCDKYT--FSI 227 (485)
Q Consensus 154 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ 227 (485)
-|..|-.++. ..|+-..|.+.-.+-.+. +..|....-.|+.+ ..-.|+++.|.+-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3444444443 346666666665544322 22243333333332 33457777777777777652 22211 122
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchh--HHHHHHHHH
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRA--YDFVITQYA 305 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 305 (485)
|.-...+.|+.+.|..+-+..- ..-. .-...+...+...+..|+++.|+++++.-.......++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa-~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAA-EKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHH-hhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2223346677777777776665 2222 22345566777778888888888888776655333333211 111221111
Q ss_pred h---cCCHHHHHHHHHHHhhcCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 306 A---CGNKDDVLRVWKRYKQNLKVYNR-GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 306 ~---~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
. ..+...|...-... ....|+.. .-..-..++.+.|++.++-.+++.+-+..+.|++ ...|....--|.
T Consensus 238 ~s~ldadp~~Ar~~A~~a-~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdt 310 (531)
T COG3898 238 MSLLDADPASARDDALEA-NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDT 310 (531)
T ss_pred HHHhcCChHHHHHHHHHH-hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCc
Confidence 1 11233333322211 12223322 2334556788999999999999999887665542 233333333334
Q ss_pred HHHHHHHHHHc-CCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHH-hcCCHhHHH
Q 011472 382 AETLIYKAQLR-GTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYK-KERDIEGAD 458 (485)
Q Consensus 382 a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~ 458 (485)
+..-+++.... .++|| ..+--.+..+-...|++..|..--+... ...|....|..|.+.-. ..||-.++.
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~-------r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA-------REAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh-------hhCchhhHHHHHHHHHhhccCchHHHH
Confidence 44444443321 14454 5666667777888899988887777666 45888888888887644 559999999
Q ss_pred HHHHHHhcC
Q 011472 459 YFIKLLTGK 467 (485)
Q Consensus 459 ~~~~~~~~~ 467 (485)
..+-+.++.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 998887763
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.57 E-value=0.00026 Score=47.04 Aligned_cols=61 Identities=11% Similarity=0.027 Sum_probs=41.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCC
Q 011472 405 ATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIIS 471 (485)
Q Consensus 405 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 471 (485)
...+...|++++|++.|+++++ ..+-+...+..+..++...|++++|...|+++.+..|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4556777777777777777775 222255666677777777777877777777777666644
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0037 Score=53.96 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=83.1
Q ss_pred cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcccH
Q 011472 290 HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD---GMESAEKIFEEWESRNLCHDIRIP 366 (485)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 366 (485)
.|.|...|..|...|...|+.+.|..-|.....-.++++..+..+..++..+. ...++..+|+++...... |+...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 56677888888888888888888888888766666667776776666665443 356788888888876544 66777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011472 367 NHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (485)
..|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 777788888888888888888888753 44444555543
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.056 Score=48.74 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG 377 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 377 (485)
+..+.-+...|+...|.++-... ..|+..-|...+.+++..+++++-.++... +-.+.-|..++.+|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33344444444444444432221 124444455555555555555444443221 112344555555555555
Q ss_pred CHHHHHHHHHH
Q 011472 378 LLHKAETLIYK 388 (485)
Q Consensus 378 ~~~~a~~~~~~ 388 (485)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555554443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.0051 Score=46.25 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=26.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 371 DAYCRRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555443322 22333444445555555555555555543
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.013 Score=49.46 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCC-cchhHHHHHHHHHhcCCHHHH
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNK-FSRAYDFVITQYAACGNKDDV 313 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 313 (485)
+...|.+.|.+..|..-++.+.+.-+..+ ...+...++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 56677788888888888888777621111 123455666677777766643
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0014 Score=58.58 Aligned_cols=286 Identities=15% Similarity=0.090 Sum_probs=149.0
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHH--HHh--CCCC-CCcchHHHHHH
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKL-----PSVYIALLNAYACAKSAEKAEIIMQQ--MRD--RGLV-KKTIDYNSMMN 195 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~--m~~--~~~~-p~~~~~~~l~~ 195 (485)
..-+++.|+......+|+...+.+.+ ..+|..|.++|.-.+++++|++.-.. ... .|-+ -...+-..|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34567888888888888887776632 24577777777777778887765322 111 0100 02233344555
Q ss_pred HHHHcCChhhHHHHHHHH----HHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 011472 196 VYYQTGNYKKLDSLMHEM----EEKGID-CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK 270 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m----~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (485)
.+--.|.+++|.-+...- .+.|-+ .....+-.+.+.|...|+.-.... -. +.|-.++..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pe-e~g~f~~ev~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PE-EKGAFNAEVT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hh-hcccccHHHH----------
Confidence 555566666665443222 122211 112233334444444443110000 00 0011111110
Q ss_pred cCChHHHHHHHHHHHHh----hccCCcchhHHHHHHHHHhcCCHHHHHHHHH-HH--hh--cCC-CCcccHHHHHHHHHh
Q 011472 271 AGLSDKALAVLRKSEVL----MMHNKFSRAYDFVITQYAACGNKDDVLRVWK-RY--KQ--NLK-VYNRGYICVISSLLK 340 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~--~~--~~~-~~~~~~~~li~~~~~ 340 (485)
..++.|.++|.+-.+. +........|..|...|.-.|+++.|+...+ ++ .. +.+ .....+..+..++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 0123333443331111 1111222566777777777788888877766 22 11 111 223456677777777
Q ss_pred cCCHHHHHHHHHHHHh----cCC-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCcHHHHHHHHHHHhc
Q 011472 341 FDGMESAEKIFEEWES----RNL-CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL----RG-TEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~li~~~~~ 410 (485)
.|+++.|.+.|+.... .|- .......-+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8888888877776542 221 11233445677777777778888877765321 11 11235677788888888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 011472 411 NNQSEKGVEAMKKALVL 427 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~ 427 (485)
.|..++|+.+.+..++.
T Consensus 328 lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888777666553
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00027 Score=47.50 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred hccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 409 LQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 409 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
...|++++|+++|+++.+. .+-+...+..+..+|.+.|++++|..+++++.+..+.++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 4567888888888888863 33366777778888888888888888888888777665443
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.45 E-value=0.088 Score=48.22 Aligned_cols=381 Identities=8% Similarity=-0.016 Sum_probs=209.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhc--C--C-----------
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEK--L--K----------- 150 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~--~----------- 150 (485)
-+.++++|.. .+.+.....+....+.. +.++....+..-.+.+.+.+++|.+.+...... + +
T Consensus 49 ~grilnAffl-~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~ 125 (549)
T PF07079_consen 49 GGRILNAFFL-NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF 125 (549)
T ss_pred hhHHHHHHHH-hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence 3566666654 45677766777766653 344444444455567899999999988776554 1 1
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCcchHHHHHHHHHHc--------CCh-------hhHHHHH
Q 011472 151 -LPSVYIALLNAYACAKSAEKAEIIMQQMRDRG----LVKKTIDYNSMMNVYYQT--------GNY-------KKLDSLM 210 (485)
Q Consensus 151 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~--------~~~-------~~a~~~~ 210 (485)
|...=+..++++...|.+.++..+++++..+= ..=+..+|+.++-.+.+. ... +.+.-..
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 12223556788899999999999999987542 335788888865554432 112 2222222
Q ss_pred HHHHHc------CCCCCcchHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCChHHHHHHH
Q 011472 211 HEMEEK------GIDCDKYTFSILLSACAAA--SDGEGIDKIVAMMEADRGVVLDWTV-YATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 211 ~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~ 281 (485)
.+|... .+.|....+..++....-. ....--++++..-. ..-+.|+... ...+...+.. +.+++..+.
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 333221 1233333333333322211 12233344454444 4455566443 2334444443 555555554
Q ss_pred HHHHHhh---ccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc------HHHHHHHHHh----cCCHHHHH
Q 011472 282 RKSEVLM---MHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG------YICVISSLLK----FDGMESAE 348 (485)
Q Consensus 282 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~li~~~~~----~~~~~~a~ 348 (485)
+.+.... ....-..++..++....+.++..+|...+.+++.-.+.+... -..+-+..+. .-+...=.
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 4433220 011224678899999999999999999998765433322211 1112222221 11233334
Q ss_pred HHHHHHHhcCCCCCcccHHHHH---HHHHHcCC-HHHHHHHHHHHHHcCCCC-cHHHHHHHH----HHHhc---cCCHHH
Q 011472 349 KIFEEWESRNLCHDIRIPNHLI---DAYCRRGL-LHKAETLIYKAQLRGTEP-NVRTWYLMA----TGYLQ---NNQSEK 416 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~~~~~li----~~~~~---~g~~~~ 416 (485)
.+|+.....++. .......|+ .-+-+.|. -++|..+++.+.+. .| |..+-|.+. ..|.+ ...+.+
T Consensus 363 ~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 363 NLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555555554332 111222233 33455665 88999999999874 23 333333222 23322 233444
Q ss_pred HHHHHHHHHHhhccCCCCcc----CHHHHHHHHHH--HHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HH
Q 011472 417 GVEAMKKALVLLEAGTRWKP----SKECLAACLGY--YKKERDIEGADYFIKLLTGKEIISADLQDRLL-NN 481 (485)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~ 481 (485)
-..+-+-..+ .|+.| +...-+.|.+| +...|++.++.-.-.-+.+-. |++.+|+.+. +.
T Consensus 440 LlkLe~fi~e-----~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia-PS~~~~RLlGl~l 505 (549)
T PF07079_consen 440 LLKLEDFITE-----VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-PSPQAYRLLGLCL 505 (549)
T ss_pred HHHHHHHHHh-----cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CcHHHHHHHHHHH
Confidence 4444444444 48887 44666777765 567999999887655555544 4899999887 54
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.035 Score=46.91 Aligned_cols=130 Identities=10% Similarity=0.000 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHH-----
Q 011472 156 IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS----- 230 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----- 230 (485)
+.++..+...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 334444444455555555555555544333444445555555555555555555554444333333333333221
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.|.-.+++..|...|+++. ..+. .++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~-~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEIL-RMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhcc-ccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2223344444444454444 3222 23333333333333344555555555555443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.44 E-value=0.00043 Score=46.64 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcC-CHhHHHHHHHHHhcCCC
Q 011472 397 NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKER-DIEGADYFIKLLTGKEI 469 (485)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 469 (485)
++..|..+...+...|++++|+..|+++++. .| +...|..+..++.+.| ++++|++.+++..+..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566777777777777888888888777763 34 4566667777777777 67777777777765443
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.0013 Score=58.71 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCC-CcH
Q 011472 329 RGYICVISSLLKFDGMESAEKIFEEWE----SRNLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQ----LRGTE-PNV 398 (485)
Q Consensus 329 ~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~ 398 (485)
..|..|...|.-.|+++.|....+.-+ +.|-+. .-..+..+..++.-.|+++.|.+.|+.-. +.|-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456677777777889999987765433 223221 23456678888888999999999887653 33211 235
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 399 RTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+.-+|...|.-..++++|+.++.+-+.....-....-....+.+|..++...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667888888888899999998775543111112223457888999999999999999887765543
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0031 Score=51.71 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChH
Q 011472 79 RPLDMEQLRIIIKKFRLY-----KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPS 153 (485)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 153 (485)
-.-+..+|..+++.|.+. |..+-....++.|.+-| +..+..+|..+++.+=+ |.+- |. .
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPK-g~fv-------------p~-n 106 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPK-GKFV-------------PR-N 106 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCC-CCcc-------------cc-c
Confidence 456778888888877644 56666667777777766 44455555554444322 1111 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
.+.++-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 24567899999999999999999999999999966554
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.016 Score=43.59 Aligned_cols=92 Identities=12% Similarity=0.005 Sum_probs=51.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHH
Q 011472 193 MMNVYYQTGNYKKLDSLMHEMEEKGIDCD--KYTFSILLSACAAASDGEGIDKIVAMMEADRGVV--LDWTVYATAASGY 268 (485)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 268 (485)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.. ..... .+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHH
Confidence 34455566667777777777666665543 2244445556666777777777776665 21111 1222222344455
Q ss_pred HhcCChHHHHHHHHHHH
Q 011472 269 VKAGLSDKALAVLRKSE 285 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~ 285 (485)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777766665543
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.39 E-value=0.00089 Score=44.42 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=27.2
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 180 (485)
.+.+.|++++|.+.|+++....|+ ...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555554443 34455555555555555555555555544
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.016 Score=50.18 Aligned_cols=102 Identities=16% Similarity=-0.026 Sum_probs=61.7
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHhhccCCCCccCH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN---NQSEKGVEAMKKALVLLEAGTRWKPSK 438 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~p~~ 438 (485)
|...|-.|...|...|+.+.|..-|.+..+... +++..+..+..++... ....++..+|++++. .-+-|.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~i 227 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPANI 227 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCccH
Confidence 666677777777777777777777777665321 2344444444443222 234566677777775 333355
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 439 ECLAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
.....|...+...|++.+|...++.|.+..++
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55556666677777777777777777776654
No 200
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.21 Score=49.78 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=123.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
.+.|+.++|..+++.....+. .+..+..++-.+|...++.++|..+|++.....|+......+..+|.+.+.+.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999988888776652 367777777888888999999999999999888887666677778888777655433
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHcCC----------hhhHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCChHHHH
Q 011472 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGN----------YKKLDSLMHEMEEKG-IDCDKYTFSILLSACAAASDGEGID 242 (485)
Q Consensus 174 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~ 242 (485)
+=-+|-+. .+-+...|=+++....+.-. ..-|.+.++.+.+.+ .--+..-...-...+...|++++|.
T Consensus 132 aa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 33333222 22244444455555443321 233555666666553 1111112222234455678888998
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 011472 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLM 288 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 288 (485)
+++..-..+.-...+...-+.-++.+...+++.+..++-.++...+
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 8884333244444555555667778888888888888888887774
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.29 E-value=0.0088 Score=52.25 Aligned_cols=102 Identities=8% Similarity=-0.032 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
|..-+..+.+.|++++|...|+.+.+.. |+ ...+-.+..+|...|++++|...|+.+++. .++-......+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl 220 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHH
Confidence 4444444455677777777777777643 43 245566667777777777777777777752 00111123444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 442 AACLGYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
..+...+...|+.++|..+|+++.+..|.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4555566677777777777777777666443
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.056 Score=45.51 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=34.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHH
Q 011472 404 MATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGAD 458 (485)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 458 (485)
+...|.+.|.+..|..-++.+++. -++..-.......++.++.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~---yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN---YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456788899999999999999873 1111112245667778888888887544
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.068 Score=48.71 Aligned_cols=77 Identities=8% Similarity=-0.051 Sum_probs=44.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhcc--CCcchhHHHHHHHHHh---cCCHHHHHHHHHH-HhhcCCCCcccHHHHHH
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMH--NKFSRAYDFVITQYAA---CGNKDDVLRVWKR-YKQNLKVYNRGYICVIS 336 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~ 336 (485)
.++-+|....+++..+++++.+...... ......-....-++.+ .|+.++|+.++.. +.....+++.+|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677777777777777777654111 1111222334445555 6677777777664 55555566666666666
Q ss_pred HHH
Q 011472 337 SLL 339 (485)
Q Consensus 337 ~~~ 339 (485)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 553
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.067 Score=42.76 Aligned_cols=68 Identities=10% Similarity=-0.188 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 219 DCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 219 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.|++..--.|..+....|+..+|...|++.. ..-+.-|....-.+..+....+++..|...++++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 4555544555666666666666666666665 4333445555555555666666666666666665554
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.013 Score=46.51 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCcch
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE-----KGIDCDKYT 224 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 224 (485)
.+...++..+...|++++|.++.+.+....+- |...|..+|.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555666677777888888888777766433 666777778888888888887777777643 366666544
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.0081 Score=52.45 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----hHHHHHHHH
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSN-FVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL----PSVYIALLN 160 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~ll~ 160 (485)
|...+..+.+.|++++|+..|+.+.+... .+..+..+..+..++...|++++|...|+.+....|+ ...+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444555666666666666665431 0111344445555555566666666666665554433 233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011472 161 AYACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~ 181 (485)
.+...|+.++|..+|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 455555566666655555543
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.15 Score=46.19 Aligned_cols=263 Identities=9% Similarity=-0.022 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhc
Q 011472 87 RIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACA 165 (485)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 165 (485)
...-..+-+...+..|+..+...++.. +-+...|.-.+..+...+++++|..-.+.-....|. ...+...-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 334455666778888888888888875 334445555566667777777776665554433221 22222233333333
Q ss_pred CCHHHHHHHHH---------------HHHhCC-CCCCcchHHHHH-HHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHH
Q 011472 166 KSAEKAEIIMQ---------------QMRDRG-LVKKTIDYNSMM-NVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228 (485)
Q Consensus 166 ~~~~~a~~~~~---------------~m~~~~-~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (485)
++..+|.+.|+ ...... -+|.-.+|..+- .++.-.|++++|.+.-...++.. ....+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 33333333332 111111 113333443332 34556788899888877776642 12233444
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-------------HHHHHHHhcCChHHHHHHHHHHHHhhc--cC
Q 011472 229 LS--ACAAASDGEGIDKIVAMMEADRGVVLDWTVYA-------------TAASGYVKAGLSDKALAVLRKSEVLMM--HN 291 (485)
Q Consensus 229 l~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 291 (485)
++ ++.-.++.+.+...|++.. .. .|+...-- .-.+-..+.|++.+|.+.|.+.....+ ..
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal-~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQAL-RL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred hcccccccccchHHHHHHHhhhh-cc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 44 3445678889999998888 43 34433211 112234577888888888888876621 22
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011472 292 KFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 357 (485)
++...|........+.|+..+|+.--++.....+.-...|..-..++...+++++|.+-++...+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333446666667777888888888777655443333344444455566677888888888877765
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.074 Score=42.52 Aligned_cols=132 Identities=12% Similarity=-0.033 Sum_probs=88.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcC---CCCCcchHH
Q 011472 150 KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG---IDCDKYTFS 226 (485)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~ 226 (485)
|++.---.|..+..+.|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 55566666778888888888888888887654344466666677777777888888888888877653 2333 344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 227 ILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 227 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.+.+.+...|....|..-|+... . .-|+...-......+.+.|+.++|..-+.++.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~-~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI-S--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH-H--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56677888888888888888887 3 335544444445556677777666555544443
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.19 E-value=0.0025 Score=42.81 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC-CHHHHHHHHH
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG-NKDDVLRVWK 318 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~ 318 (485)
..+|..+...+...|++++|+..|++..+. .+.+...|..+..+|...| ++++|++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 344555555566666666666666665555 3444455555555555555 4555555555
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0017 Score=45.03 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC-HHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS-KECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
..+++.+...|...|++++|++.|+++++.......-.|+ ..++..+...+...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666677777776666666531111112222 3455666666667777777777666554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.00 E-value=0.0049 Score=41.96 Aligned_cols=62 Identities=19% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
..|.+.+++++|+++++.++.. .+.+...+......+.+.|++++|.+.+++..+..|.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4567777888888888887752 2335566666677777888888888888888777774444
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.99 E-value=0.043 Score=43.26 Aligned_cols=85 Identities=11% Similarity=-0.071 Sum_probs=53.0
Q ss_pred HhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHH
Q 011472 130 AKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208 (485)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 208 (485)
-..|++++|..+|.-+.-.+| +..-|..|..++-..+++++|+..|......+.. |...+.....++...|+.+.|.+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence 456777777777776665543 3444555666666667777777777665544432 44445556666667777777777
Q ss_pred HHHHHHH
Q 011472 209 LMHEMEE 215 (485)
Q Consensus 209 ~~~~m~~ 215 (485)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7666665
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0071 Score=41.13 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=30.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC
Q 011472 92 KFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL 151 (485)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 151 (485)
.+.+.+++++|+++++.+.+.+ |.++..+.....++.+.|++++|.+.|+...+..|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4455566666666666665553 234444444455555555555555555555554444
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.88 E-value=0.017 Score=43.90 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=52.0
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHH---------------cCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQL---------------RGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|..++..++.++++.|+++....+++..=. ....|+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345677788888888888888887765421 11235555666666666666666666666666665
Q ss_pred hhccCCCCccCHHHHHHHHHHHH
Q 011472 427 LLEAGTRWKPSKECLAACLGYYK 449 (485)
Q Consensus 427 ~~~~~~~~~p~~~~~~~l~~~~~ 449 (485)
. .+++.+..+|..|+.-+.
T Consensus 81 ~----Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 K----YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred H----cCCCCCHHHHHHHHHHHH
Confidence 4 445555566666665443
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.23 Score=42.17 Aligned_cols=132 Identities=14% Similarity=-0.031 Sum_probs=85.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-----HH
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA-----TA 264 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l 264 (485)
-+.+++.+.-.|.+.-....+.+.++...+.+......|.+.-.+.||.+.|..+|+...+..+ ..|..+.+ ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 4566666667778888888888888876666667777788888888888888888887662222 23333332 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 011472 265 ASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL 324 (485)
Q Consensus 265 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (485)
...|.-.+++.+|...+.+.... .+.+....|.-.-+..-.|+..+|++.++.+....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33455567777777777776665 44444555555555555666677777666555443
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.0066 Score=48.11 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
...++..+...|++++|..+.+.+..... -|...|..+|.+|...|+...|.+.|+++.+.+...-|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666667777777777777776432 2466777777777777777777777777666554555677766543
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.79 E-value=0.34 Score=44.55 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 342 (485)
..+..-.+..-++.|..+|-++.+.+...+++..+++++.-++ .|+..-|.++|+.-....+.+..-....+..+...+
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~in 480 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIN 480 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 3344434444444444444444444333344444444443332 233444444444222222222222223333344444
Q ss_pred CHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 343 GMESAEKIFEEWESRNLCHD--IRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
+-+.|..+|+....+ +..+ ..+|..+|+--..-|++..+..+-++|.+
T Consensus 481 de~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 481 DEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred cHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 444444444433221 1111 23344444444444444444444444443
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.26 Score=42.84 Aligned_cols=121 Identities=7% Similarity=0.036 Sum_probs=57.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHH--HHHHHHHHhcCC
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVY--IALLNAYACAKS 167 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~ 167 (485)
.......|++.+|..+|+...... +-+......+..++...|+.+.|..++..++....+.... ..-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334455566666666666665543 2334445555566666666666666666655543222111 122333333333
Q ss_pred HHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVK-KTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
..+...+-.+.-.. | |...=..+...+...|+.++|.+.+-.+.+
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333332221 2 333334455555555666665555544443
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.71 E-value=0.033 Score=43.91 Aligned_cols=87 Identities=13% Similarity=-0.039 Sum_probs=46.1
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESA 347 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 347 (485)
+...|++++|..+|.-+... .+-+..-|..|..++-..+++++|+..|.....-.+.|+..+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 34556666666666655544 2223344555555555556666666666543322233444444555566666666666
Q ss_pred HHHHHHHHh
Q 011472 348 EKIFEEWES 356 (485)
Q Consensus 348 ~~~~~~~~~ 356 (485)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.66 E-value=0.0087 Score=41.33 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh----hccCC-cchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVL----MMHNK-FSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
+|+.+...|...|++++|+..|++..+. +...+ ...++..+..+|...|++++|++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455556666666666666666655433 11111 13345555555555555555555554
No 221
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.17 Score=39.96 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=80.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHH-HHHHHHHhhCCHHHHHHHHHhhhhcCC
Q 011472 72 DQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVA-IRLDLIAKVQGIEQAASYFNCVPEKLK 150 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~ 150 (485)
+.|....-.-+...|..-++. .+.+..++|+.-|..+.+.|. .--|..-. .........|+...|...|+++-...+
T Consensus 48 ~yw~~s~as~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~-g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 48 TYWQTSRASKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGY-GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred ehhcccccccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 344444444555666666654 566777888888888888772 22222222 224455677788888888887766554
Q ss_pred ChHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 151 LPSVYIALL-----NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 151 ~~~~~~~ll-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
.+.....+. -.+...|.++....-.+-+...+-+.-...-..|.-+..+.|++.+|.++|.++...
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 444432222 224456666666666555544332222222334455555666666666666666553
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.53 Score=43.09 Aligned_cols=169 Identities=18% Similarity=0.080 Sum_probs=101.9
Q ss_pred CChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC----C-ChHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCcc
Q 011472 117 LTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL----K-LPSVYIALLNAYAC---AKSAEKAEIIMQQMRDRGLVKKTI 188 (485)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~ 188 (485)
.++++...++-.|....+++...++.+.+.... + ...+-....-++-+ .|+.++|++++..+......++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 556666666777888889999999988887752 1 12233344455666 788999999988866665667888
Q ss_pred hHHHHHHHHHHc---------CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChH----HHHHHH---HHHHhcC
Q 011472 189 DYNSMMNVYYQT---------GNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGE----GIDKIV---AMMEADR 252 (485)
Q Consensus 189 ~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~----~a~~~~---~~~~~~~ 252 (485)
+|..+.+.|-.. ...++|...|.+.-+ +.||..+--.++..+.-.|... +..++- ..+..+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 888888776321 125667777766544 3355544333333333333211 222222 2111122
Q ss_pred C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 253 G---VVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 253 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
| -..+...+.+++.+..-.|+.++|.+..++|...
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 2244455567777777788888888888877765
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.54 E-value=0.024 Score=43.05 Aligned_cols=50 Identities=6% Similarity=-0.035 Sum_probs=29.6
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011472 218 IDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267 (485)
Q Consensus 218 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (485)
..|+..+..+++.+|+..|++..|+++.+...+..+++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555666666666666666666666666665555555555555555543
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.47 E-value=0.59 Score=41.63 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCCHHH---HHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 011472 295 RAYDFVITQYAACGNKDD---VLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLID 371 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (485)
.+...++.+|...+..+. |..+++.+....+-.+..+..-+..+.+.++.+.+.+++.+|...- ......+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 356777788887776654 4445555555555556667677788878888999999999998762 213344555555
Q ss_pred HHHH--cCCHHHHHHHHHHHHHcCCCCcHHHH-HHH-HH---HHhccCC------HHHHHHHHHHHHHhhccCCCCccCH
Q 011472 372 AYCR--RGLLHKAETLIYKAQLRGTEPNVRTW-YLM-AT---GYLQNNQ------SEKGVEAMKKALVLLEAGTRWKPSK 438 (485)
Q Consensus 372 ~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l-i~---~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~p~~ 438 (485)
.+.. ......|...++.+....+.|....| ..+ +. ...+.++ .+...+++....+. .+.+.+.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~----~~~~ls~ 239 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS----LGKQLSA 239 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH----hcCCCCH
Confidence 5422 22345677777777655555554311 111 11 1112111 44444555543332 2333333
Q ss_pred HHHH---HHH----HHHHhcCCHhHHHHHHHHHh
Q 011472 439 ECLA---ACL----GYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 439 ~~~~---~l~----~~~~~~g~~~~a~~~~~~~~ 465 (485)
.+-. +++ ..+.+.++++.|.+.|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 332 44668899999999998543
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.7 Score=41.80 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=78.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011472 329 RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY 408 (485)
Q Consensus 329 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (485)
.+.+..+.-|...|+...|.++-.+. . .||-..|-..+.+++..+++++-.++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45666677778888888888886665 2 36888888999999999999888776432 13568888899999
Q ss_pred hccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011472 409 LQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYF 460 (485)
Q Consensus 409 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 460 (485)
.+.|+..+|..+..++. + ..-+..|.++|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~-----------~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-----------D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhCC-----------h----HHHHHHHHHCCCHHHHHHH
Confidence 99999999888886631 1 3345556777777777654
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.39 E-value=0.022 Score=48.53 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=66.0
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC-------------
Q 011472 140 SYFNCVPEKLKLPSVYIALLNAYAC-----AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG------------- 201 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------- 201 (485)
..|..+.....|..+|-+.+..+.. .+.++-.-..+..|.+.|+.-|..+|+.|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444333456666666665544 2556666667778888888888888888888764432
Q ss_pred ---ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 011472 202 ---NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD 237 (485)
Q Consensus 202 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 237 (485)
+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224467778888888888888888888888777664
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.2 Score=48.05 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHH---
Q 011472 83 MEQLRIIIKKFRLYKRFS--HALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIA--- 157 (485)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--- 157 (485)
.-.++..=++|.+-++.. +.+--++++.+.| -.|+. ..+...++-.|++.+|.++|.+--..+.-...|+-
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg---e~P~~-iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRG---ETPND-LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRM 673 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC---CCchH-HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 334555556666655543 3344455566655 22222 23456677777888888877765444333333332
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHH------HHHHcCCCC---CcchHH
Q 011472 158 --LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMH------EMEEKGIDC---DKYTFS 226 (485)
Q Consensus 158 --ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~g~~p---~~~~~~ 226 (485)
+..-|...|..++-..+.++-.+-. -|+.-=.+....+...|+.++|..+.- -+.+.+-+. +..+..
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~ 751 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL 751 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence 2344566677666555554432210 011111233344555677666665431 122222222 223444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 227 ILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 227 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.+..-+.+...+..|-++|..|- +. ..++..+...++|++|..+-+...+
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~g-D~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMG-DL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhc-cH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 44444556667778888888876 32 1367778888999999888776543
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.31 E-value=0.59 Score=39.90 Aligned_cols=57 Identities=19% Similarity=0.092 Sum_probs=33.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCc---chhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKF---SRAYDFVITQYAACGNKDDVLRVWKRYKQ 322 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 322 (485)
+..-|.+.|.+..|..-+++|.+. .+.. ...+-.+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 556667777777777777777665 2221 13345555666666666666665554333
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.1 Score=44.78 Aligned_cols=104 Identities=10% Similarity=0.050 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP--NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECL 441 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~ 441 (485)
.|+.-+.. .+.|++..|..-|...++....- ....+--|..++...|++++|..+|..+.+. .+-.| -+..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~----~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD----YPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh----CCCCCCChHHH
Confidence 45554443 45566888888888877754210 1334445677888888888888888888763 22222 33667
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 442 AACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
..|..+..+.|+.++|...|+++.+..|..+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 77777788888888888888888887775443
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.32 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=13.6
Q ss_pred HHHHhcCCHhHHHHHHHHHhcC
Q 011472 446 GYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.+|.++|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3456666666666666666543
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=1.3 Score=43.56 Aligned_cols=322 Identities=13% Similarity=0.117 Sum_probs=186.5
Q ss_pred CCCChhHHHHH-----HHHHHhhCCHHHHHHHHHhhhhcC-CChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 011472 115 FVLTPADVAIR-----LDLIAKVQGIEQAASYFNCVPEKL-KLPSVYIALLNAYACAKS---AEKAEIIMQQMRDRGLVK 185 (485)
Q Consensus 115 ~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~p 185 (485)
++++-..|..+ ++-+...+.+..|.++-..+.... ....+|.....-+.+..+ -+-+..+-+++... ..
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~- 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LT- 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CC-
Confidence 56666655554 666778888999998877765521 115677777777776633 22233333333332 22
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcC---------
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID----CDKYTFSILLSACAAASDGEGIDKIVAMMEADR--------- 252 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------- 252 (485)
...+|..+.+-....|+.+-|..+++.=...+-. .+..-+...+.-+...||.+....++-.+..+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888899999998887653222110 122334455666777888887777766665221
Q ss_pred -CCCCCHHHHHHHHH--------HHHhcCChHHHHHHHHH--HHHhhccCCcchhHHHHHHHHHhcCCH-------HHHH
Q 011472 253 -GVVLDWTVYATAAS--------GYVKAGLSDKALAVLRK--SEVLMMHNKFSRAYDFVITQYAACGNK-------DDVL 314 (485)
Q Consensus 253 -~~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~a~ 314 (485)
..+.....|.-+++ .+.+.++-.++...|.. ........+..........++.+.... ++-.
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 11111122222221 01111222222222211 000000111112333444455544431 1112
Q ss_pred HHHH---HHh--hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 011472 315 RVWK---RYK--QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389 (485)
Q Consensus 315 ~~~~---~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 389 (485)
+++. .+. -+..-...+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+.+
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 2222 122 2223445567777778888999999988877763 468888888899999999998877765544
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011472 390 QLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIK 462 (485)
Q Consensus 390 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (485)
. .+.-|.....+|.+.|+.++|.+++.+.- +.. -...+|.+.|++.+|.+.--
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccC-------ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 3 36677888999999999999999986653 221 45677888888888876543
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.13 E-value=0.29 Score=47.09 Aligned_cols=159 Identities=9% Similarity=0.030 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCcchHH
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDR-GLVKK-----TIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKGIDCDKYTFS 226 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (485)
.++...+=.|+-+.+++.+.+..+. ++.-. .-.|+.++..++. ....+.|.++++.+.++ -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3445555556666666666554432 11110 1224444444332 23455666666666653 34544443
Q ss_pred HH-HHHHHhcCChHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH-H
Q 011472 227 IL-LSACAAASDGEGIDKIVAMMEAD-RGV-VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI-T 302 (485)
Q Consensus 227 ~l-l~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~ 302 (485)
.. .+.+...|++++|++.|+..... ... ......+--+..++.-..+|++|.+.|..+.+.. .-+...|..+. .
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 22 23455566666666666654310 111 1122333445556666677777777777766652 11212222222 2
Q ss_pred HHHhcCCH-------HHHHHHHHH
Q 011472 303 QYAACGNK-------DDVLRVWKR 319 (485)
Q Consensus 303 ~~~~~~~~-------~~a~~~~~~ 319 (485)
++...|+. ++|.++|..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHH
Confidence 33345555 666666664
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.23 Score=46.14 Aligned_cols=35 Identities=11% Similarity=-0.162 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011472 79 RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKS 113 (485)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 113 (485)
.+.+...++.+..+|.+.|++++|+..|+..++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35556667777777777777777777777766654
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.11 E-value=0.17 Score=47.93 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQ 177 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 177 (485)
...+.|+++.|.++.+++. +...|..|.+...+.|+++-|.+.|.+
T Consensus 327 LAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3344444444444433332 234455555555555555555544444
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.093 Score=45.00 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----hHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKS-NFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL----PSVYIALL 159 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~ll 159 (485)
.|+.-++.+ +.|++..|.+.|...++.. .-+..++.+-.+...+...|++++|..+|..+....|+ +...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 4455666666666666553 12233455555555556666666666666555554432 24444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011472 160 NAYACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~ 181 (485)
.+..+.|+.++|...|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555556666666666655554
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.09 E-value=0.017 Score=34.56 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHH
Q 011472 440 CLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 478 (485)
++..+..++.+.|++++|+++|+++.+..|.++..+..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 456666777777777777777777777777776666554
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.09 E-value=0.24 Score=47.66 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--CCh------HHHHHHHHHHHh----cC
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL--KLP------SVYIALLNAYAC----AK 166 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~------~~~~~ll~~~~~----~~ 166 (485)
+.-..-+|.-+.. .=|..+..++...+-.|+.+.+.+.+.+..+.. ..+ -+|+..+..++. ..
T Consensus 173 v~~G~G~f~L~lS-----lLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 173 VYFGFGLFNLVLS-----LLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred HHHHHHHHHHHHH-----hCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 3445567777766 346677778888888899999999998876642 111 235555444433 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHHHcCChhhHHHHHHHHHHcC---CCCCcchHHHHHHHHHhcCChHHHH
Q 011472 167 SAEKAEIIMQQMRDRGLVKKTIDYNS-MMNVYYQTGNYKKLDSLMHEMEEKG---IDCDKYTFSILLSACAAASDGEGID 242 (485)
Q Consensus 167 ~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~ 242 (485)
+.+.|.++++.+.++- |+...|.. -.+.+...|++++|++.|+...... .+.....+-.+.-++.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 6888999999998763 56555543 3456678899999999999765421 1123344556677788899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHH-HHHHHHhcCCh-------HHHHHHHHHHHHh
Q 011472 243 KIVAMMEADRGVVLDWTVYAT-AASGYVKAGLS-------DKALAVLRKSEVL 287 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~~ 287 (485)
+.|..+.+.... +..+|.- ...++...|+. ++|.++|.++...
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999933333 3444433 33445567777 8999999987665
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.08 E-value=0.5 Score=36.94 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 011472 332 ICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN 411 (485)
Q Consensus 332 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 411 (485)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ .++....+.. .++.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4456666666666777777777666653 45666777777776653 2333333331 12334444566666666
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhc-CCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHH
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKE-RDIEGADYFIKLLTGKEIISADLQDRLL-NNI 482 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~ 482 (485)
+.++++.-++.++.. +...+..+.+. ++.+.|.+++++- .+++.|..++ .++
T Consensus 83 ~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence 777777776665532 11122222233 6667777666652 2455666666 443
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.08 E-value=0.98 Score=40.24 Aligned_cols=121 Identities=13% Similarity=0.036 Sum_probs=69.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH-------HhhC-CHHHHHHHHHhhhhc----------CCCh---
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI-------AKVQ-GIEQAASYFNCVPEK----------LKLP--- 152 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~A~~~~~~~~~~----------~~~~--- 152 (485)
.+.|+.+.|..++.+...... ..+|.....+.+.| .+.+ +++.|..++++..+. .++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467888888888888876542 34565555554333 2445 777776666653332 1221
Q ss_pred --HHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 153 --SVYIALLNAYACAKSA---EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 153 --~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
.+...++.+|...+.. ++|..+++.+...... ....+-.-+..+.+.++.+++.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3455566666666554 3455555555433221 2334444555555567777777777777765
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.06 E-value=0.8 Score=39.15 Aligned_cols=187 Identities=16% Similarity=0.034 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 011472 201 GNYKKLDSLMHEMEEKGIDC-DKYTFSILLSACAAASDGEGIDKIVAMMEADR-GVVLDWTVYATAASGYVKAGLSDKAL 278 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 278 (485)
+....+...+.......... ....+......+...+++..+...+.... .. ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL-ELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444332211 13344445555555566666655555554 21 22233344444555555555555555
Q ss_pred HHHHHHHHhhccCCcchhHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCC----CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 279 AVLRKSEVLMMHNKFSRAYDFVIT-QYAACGNKDDVLRVWKRYKQNLKV----YNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
+.+....... +.+......... .+...|+++.+...+..... ..| ....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 5555554431 111122222222 45555555555555553322 222 111122222223334444444444444
Q ss_pred HHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 354 WESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
............+..+...+...++++.|...+.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 44331110123333444444444444444444444444
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.66 Score=40.43 Aligned_cols=153 Identities=11% Similarity=0.058 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 011472 162 YACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI 241 (485)
Q Consensus 162 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 241 (485)
....|++.+|..+|......... +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44556666666666666554333 34444556666666666666666666654331111111112223333333333333
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
..+-.+.- . +. -|...-..+...+...|+.++|.+.+-.+.++.....+...-..+++.+.-.|.-+.+...++
T Consensus 223 ~~l~~~~a-a-dP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 223 QDLQRRLA-A-DP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHH-h-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33333333 1 11 244555566667777777777777666666553333344566666666665554444333333
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.03 E-value=0.25 Score=38.10 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLK----LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ 199 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 199 (485)
.....+.|++++|.+.|+.+..+.| ...+--.|+.+|.+.+++++|...+++.++..+..-..-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4444555666666666666655543 2344555666777777777777777777666543333344444444433
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.74 Score=40.74 Aligned_cols=114 Identities=15% Similarity=-0.012 Sum_probs=50.4
Q ss_pred cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHH----HHHHHhcCCHHH
Q 011472 271 AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICV----ISSLLKFDGMES 346 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~ 346 (485)
.|+.-+|-..++++.+. .|.|..++...-.+|...|+.+.-...++.+.....++...|..+ .-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444444444554444 444444455455555555555555555554444433333222221 122234455555
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIY 387 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 387 (485)
|++.-++..+.+.. |.....+....+--.|+..++.+...
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555544443221 33333344444444455555544443
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.28 Score=46.53 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=102.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHH
Q 011472 91 KKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEK 170 (485)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 170 (485)
+...-.++++++.++.+.-.-.. ..++.....++..+-+.|..+.|+.+-. |+. .-.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT-------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS--------HH---HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChH---HHhHHHHhcCCHHH
Confidence 33345688888777665211111 1346667777888888899999988754 332 23455667899998
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011472 171 AEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 250 (485)
|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~- 400 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE- 400 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-
Confidence 88775432 2667899999999999999999999887643 5667777888899888888887776
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5454 344555666678888888887764
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.14 Score=46.39 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
+..+.-++.+.+++..|.+.-..++..+.. |+...-.=..+|...|+++.|+..|+++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334444455555555555555555544322 444444444555555555555555555555
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.90 E-value=0.24 Score=46.04 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011472 118 TPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLP----SVYIALLNAYACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 181 (485)
++..+..+..+|.+.|++++|...|++..+.+|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444555555555555555555555555442 23555555555555555555555555543
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.77 E-value=2.5 Score=44.16 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCcc--hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKFS--RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
-+.+|..+|+|.+|+.+..++... .+. .+-..|+.-+...+++-+|-++....... ..-.+..+++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhH
Confidence 344555555555555555544321 111 11244555556666666665555532221 22344455555
Q ss_pred CCHHHHHHHHHH
Q 011472 342 DGMESAEKIFEE 353 (485)
Q Consensus 342 ~~~~~a~~~~~~ 353 (485)
..+++|..+-..
T Consensus 1040 ~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1040 KEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHHHh
Confidence 566666655544
No 248
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.77 E-value=0.63 Score=36.71 Aligned_cols=72 Identities=11% Similarity=-0.177 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 011472 91 KKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC 164 (485)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (485)
..-.+.++.+++..+++-+.-.. |-.+..-.+-...+...|++.+|..+|+++....|.......|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 33455667777777777776543 2233333344566667777777777777776665554444555554444
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=2.4 Score=41.87 Aligned_cols=325 Identities=14% Similarity=0.078 Sum_probs=189.2
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhC---CHHHHHHHHHhhhh
Q 011472 76 EEGRPLDMEQLR-----IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQ---GIEQAASYFNCVPE 147 (485)
Q Consensus 76 ~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~ 147 (485)
.-|++.+..-|. .+++-+...+.+..|+++-+++.... ......+......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 448888887775 46788888999999999999886432 112345555555555542 22333333333333
Q ss_pred cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcC------
Q 011472 148 KLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLV----KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG------ 217 (485)
Q Consensus 148 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g------ 217 (485)
.......|..+.+-.-.+|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-++...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2223456777777777889999999888654332211 123334555566677788777777766665420
Q ss_pred -----CCCCcchHHHHHHH--------HHhcCChHHHHHHH--HHHHh---cCCCCCCHHHHHHHHHHHHhcCChH----
Q 011472 218 -----IDCDKYTFSILLSA--------CAAASDGEGIDKIV--AMMEA---DRGVVLDWTVYATAASGYVKAGLSD---- 275 (485)
Q Consensus 218 -----~~p~~~~~~~ll~~--------~~~~g~~~~a~~~~--~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~---- 275 (485)
.+.....|.-+++- +.+.++-..+..-| +...+ ..+..|+..+ ....+.+.....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHH
Confidence 11112222222220 11112211121111 11000 1133344333 445555444321
Q ss_pred ------HHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHH
Q 011472 276 ------KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEK 349 (485)
Q Consensus 276 ------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 349 (485)
+-+.+.+.+..+-...-...+.+--+.-+...|+..+|.++-... ..||-..|-.-+.++...+++++-++
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHHHHHHHHHhhhhHHHHHH
Confidence 122233333333111122256677777788889888888775432 23788889999999999999988777
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011472 350 IFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423 (485)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (485)
+-+... .+.-|.-.+.+|.+.|+.++|.+++.+... +.....+|.+.|++.+|.++--+
T Consensus 737 fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 665432 356777899999999999999999865432 12567888899998888776543
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.65 E-value=1.2 Score=38.00 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHH-
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDR-GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS- 230 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 230 (485)
..+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555444431 111233334444444444444555555555544432221 111111111
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC-cchhHHHHHHHHHhc
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGV--VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK-FSRAYDFVITQYAAC 307 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 307 (485)
.+...|+++.+...+.+.. .... ......+......+...++.+.+...+...... .+. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKAL-ELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 4455555555555555554 2111 012222222222344445555555555555443 122 123344444444444
Q ss_pred CCHHHHHHHHH
Q 011472 308 GNKDDVLRVWK 318 (485)
Q Consensus 308 ~~~~~a~~~~~ 318 (485)
++.+.+...+.
T Consensus 216 ~~~~~a~~~~~ 226 (291)
T COG0457 216 GKYEEALEYYE 226 (291)
T ss_pred ccHHHHHHHHH
Confidence 44444444444
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.71 Score=38.92 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC 164 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (485)
.|..-..+|....++++|...+....+-. ..+. ..+-..+-++.|.-+.+++.+...-+..|+-....|.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y--Ennr-------slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNR-------SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH--Hhcc-------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45556666777777777777666655321 0111 11112233444444444444432223345555566666
Q ss_pred cCCHHHHHHHHHHHH
Q 011472 165 AKSAEKAEIIMQQMR 179 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~ 179 (485)
.|.++.|-..+++.-
T Consensus 104 ~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA 118 (308)
T ss_pred hCCcchHHHHHHHHH
Confidence 666666666665543
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.63 E-value=1.2 Score=37.99 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=44.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC---HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS---KECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.+..-|.+.|.+..|..-+++|++ ..+-. ...+-.+..+|...|-.++|...-+-+....|
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e------~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLE------NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHh------ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 345678899999999999999997 32222 24555667788899999998887666655444
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.60 E-value=0.39 Score=42.84 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=24.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCC----cchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNK----FSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
+..++...+.++++++.|+...+...... ....+..|.+.|.+..++++|.-...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444444455555555554443311111 12344555555555555555544433
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.26 Score=44.70 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=42.4
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCC----------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcch
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLK----------------LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTID 189 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 189 (485)
.+.+.+.|++..|...|+++...-. -..+++.|.-+|.+.+++.+|+..-++....+.. |+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 3566778888888887777554311 1123344444444444444444444444433221 3333
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
...-..++...|+++.|...|+.+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.51 E-value=0.94 Score=40.57 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CcchHHHHHHHHHHcCChhhHHHHHHHHHHcC-----CCCCcch
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDR-GLVK---KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKG-----IDCDKYT 224 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~ 224 (485)
.|-.+.+++-+.-++.+++.+-..-... |..| -....-++.+++...+.++++++.|+...+-. .-.....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555544433222 2212 11223345566666667777777777665421 1112346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh---cCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHh----hccC
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEA---DRGVVLDWT------VYATAASGYVKAGLSDKALAVLRKSEVL----MMHN 291 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 291 (485)
+..|-..|.+..|+++|.-+.....+ ..++ -|+. ....|.-++...|.+.+|.+..++..+. |..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 66777777777777776655443320 2232 2221 1122444566677777777777776554 2222
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 292 KFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
........+.+.|...|+.+.|..-|+
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 222344556667777777777777666
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.46 E-value=0.5 Score=44.26 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 226 SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 226 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
..+..++-+.|+.++|++.+++|.++............|+.++...+.+.++..++.+..+...+..-...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3455556667777777777777762222112233455677777777777777777776543322233334555544
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=2.4 Score=42.50 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=111.2
Q ss_pred CChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 011472 117 LTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMN 195 (485)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 195 (485)
+.+......+..+.+...++-|..+-+.-...... ..+.....+.+-+.|++++|..-|-+-... +.| ..+|.
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 33455556677777777777777765543321100 122333344455678888888877665433 222 23555
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (485)
-|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... +....-|..+ .+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~---al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVET---ALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHH---HHHHHHHhChHH
Confidence 566666777777788888888776 55566778888888888887777766654 3223235544 667777777777
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
+|..+-..... +...... .+-..+++++|++.+..
T Consensus 481 ~a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 481 EAELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhc
Confidence 77766655322 1123333 33456777888777763
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.40 E-value=1.6 Score=41.15 Aligned_cols=164 Identities=9% Similarity=0.001 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI-DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 235 (485)
.+|.-.-+..+.+.-++.-.+..+.. ||-. .|..|. --......+|.++|++..+.|-. .+ .+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~l-------g~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SL-------GKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hh-------chh
Confidence 34444455666666666666655542 4332 222222 22345578888888887765311 11 011
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHH
Q 011472 236 SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
...+..-..++... .....+-..+-..+..+..+.|+.++|++.+.+|.+..+..........|+.++...+.+.++..
T Consensus 238 ~~~~~~g~~~e~~~-~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 238 QFLQHHGHFWEAWH-RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhcccchhhhhh-ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00111111222222 33333444444668888899999999999999998764333455678899999999999999999
Q ss_pred HHHHHhhcCCCCc--ccHHHHHH
Q 011472 316 VWKRYKQNLKVYN--RGYICVIS 336 (485)
Q Consensus 316 ~~~~~~~~~~~~~--~~~~~li~ 336 (485)
++.+-.+..-|.. ..|+..+-
T Consensus 317 lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHH
Confidence 9997654433443 34555443
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.36 E-value=1.3 Score=36.64 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=102.7
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
.|-..|-+.-|+--|.+.....|+ +.+||-|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.--|+++-|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 444566677777777777777776 6789999999999999999999999998875332211112112 22345888888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKI-VAMMEADRGVVLDWTVYATAAS-GYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~ 284 (485)
.+-|...-+.+ |+...-...+-.--..-++.+|..- .++.. + .|..-|...|- .|...=.. ..+++++
T Consensus 153 q~d~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~---e~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISE---ETLMERL 222 (297)
T ss_pred HHHHHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccH---HHHHHHH
Confidence 88777776653 2322222223333344566666643 34443 2 23333433332 22221111 2223333
Q ss_pred HHhhcc-----CCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 285 EVLMMH-----NKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 285 ~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
...... ..-+.||.-+.+-+...|+.++|..+|+.
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL 262 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKL 262 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222100 00125677777777788888888888773
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.35 E-value=2.3 Score=39.36 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
+.+.-+.|+|+...+........ .++...+.++... ..++.+++....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 45566777777744444443321 2234444444333 6777777777766665
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=3.4 Score=41.54 Aligned_cols=144 Identities=16% Similarity=0.178 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC-CChHHHHHHHHHHHhc
Q 011472 87 RIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL-KLPSVYIALLNAYACA 165 (485)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ll~~~~~~ 165 (485)
....+.+.+.|++++|...|-+-+.. ..| ..++.-|....+...-..+++.+.+.+ .+...-..|+.+|.+.
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGF----LEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHccc----CCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHh
Confidence 34445566789999998887766542 122 244555667777777788888888876 3455567788999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 011472 166 KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIV 245 (485)
Q Consensus 166 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 245 (485)
++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+-..... +......+ +-..+++++|.+++
T Consensus 445 kd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi 513 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYI 513 (933)
T ss_pred cchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHH
Confidence 88887776665544 2211 11133445555555555555544333221 12222222 33455566666555
Q ss_pred HHH
Q 011472 246 AMM 248 (485)
Q Consensus 246 ~~~ 248 (485)
..+
T Consensus 514 ~sl 516 (933)
T KOG2114|consen 514 SSL 516 (933)
T ss_pred hcC
Confidence 444
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.32 E-value=2.9 Score=40.29 Aligned_cols=367 Identities=11% Similarity=0.012 Sum_probs=218.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH-HhhCCHHHHHHHHHhh
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI-AKVQGIEQAASYFNCV 145 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 145 (485)
+..+++.+.. ..|.----|......-.+.|..+.+..+|++.... ++.+...+......+ ...|+.+.....|+..
T Consensus 64 ~r~~y~~fL~-kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 64 LREVYDIFLS-KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHh-hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4445555543 23444445677777778889999999999999875 445544444443333 3578888888888887
Q ss_pred hhcC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH---Hc------CChhhHHHHHHH
Q 011472 146 PEKL----KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYY---QT------GNYKKLDSLMHE 212 (485)
Q Consensus 146 ~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~------~~~~~a~~~~~~ 212 (485)
.... .+...|...|..-..++++.....+|++.++. ....|+....-|. +. ...+++.++-..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 7652 34567888888878889999999999999876 2333333333332 11 123333333222
Q ss_pred HHHc---------------CC----CCC-cch--HHHHHHH-------HHhcCChHHHHHHHHHHHhcC--CC----CCC
Q 011472 213 MEEK---------------GI----DCD-KYT--FSILLSA-------CAAASDGEGIDKIVAMMEADR--GV----VLD 257 (485)
Q Consensus 213 m~~~---------------g~----~p~-~~~--~~~ll~~-------~~~~g~~~~a~~~~~~~~~~~--~~----~~~ 257 (485)
.... |+ .|. ..+ .+.+-.. +...-........|+.-.... .+ .++
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aq 296 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQ 296 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHH
Confidence 2210 00 010 000 1111111 111111112222222222010 11 234
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 337 (485)
..+|..-+.--.+.|+++.+.-+|+...-.. ..-...|-..+......|+.+-|..++.+...-..|.......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c--A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC--ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 5677888888889999999999999987652 22336677777777777999999999987655555544444433333
Q ss_pred HH-hcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCCcHHHHHHHHHH-----
Q 011472 338 LL-KFDGMESAEKIFEEWESRNLCHDIR-IPNHLIDAYCRRGLLHKAET---LIYKAQLRGTEPNVRTWYLMATG----- 407 (485)
Q Consensus 338 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~---~~~~m~~~~~~p~~~~~~~li~~----- 407 (485)
+. ..|++..|..+++.+.+.- |+.. .-..-+....+.|+.+.+.. ++....+.. -+....+.+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHH
Confidence 33 4679999999999998764 4432 22333455567788888873 333333211 122222322222
Q ss_pred HhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC
Q 011472 408 YLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER 452 (485)
Q Consensus 408 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 452 (485)
+.-.++.+.|..++.++.+ .++++...|..+++.+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~------~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEAND------ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhh------cCCccHHHHHHHHHHHHhCC
Confidence 3446789999999999997 77888888888888766554
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.56 Score=35.25 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=55.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCH--HHHHHHHHHHH
Q 011472 372 AYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK--ECLAACLGYYK 449 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 449 (485)
+.+..|+.+.|++.|.+.+..- +-+...||.-..++.-+|+.++|++-++++++. .|-+-.. ..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHHH
Confidence 4556677777777777766632 124667777777777777777777777777764 2211111 12222233455
Q ss_pred hcCCHhHHHHHHHHHhcCC
Q 011472 450 KERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~ 468 (485)
..|+.+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6777777777777666655
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.30 E-value=2.7 Score=39.72 Aligned_cols=182 Identities=11% Similarity=0.054 Sum_probs=120.0
Q ss_pred CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 011472 116 VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMN 195 (485)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 195 (485)
+++......++..++...+.+-.+.+..++...+.+...|-.++.+|... ..+.-..+++++.+..+. |+..-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45666666777788888888888888888887777778888888888877 557777888888777654 5555555666
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCC--Cc---chHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDC--DK---YTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK 270 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p--~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (485)
.|-+ ++-+.+...|.....+-++. +. ..|.-+... -..+.+....+...+..+.|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 77777888887776652221 11 123333321 1346677777777776555555555566666677888
Q ss_pred cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 271 AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
..++++|++++..+.+. ...|..+-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 88888888888877665 444445555555444
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=95.24 E-value=1.5 Score=41.03 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHH
Q 011472 343 GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
+..+|.++-+...+.+.. |......+..+..-.|+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666544 6666666666666777778888888877774 355 455555555666677788888888
Q ss_pred HHHHHhhccCCCCccCH---HHHHHHHHHHHhcCCHhHHHHHHH
Q 011472 422 KKALVLLEAGTRWKPSK---ECLAACLGYYKKERDIEGADYFIK 462 (485)
Q Consensus 422 ~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~ 462 (485)
+++++ +.|.. ......++.|+..+ .++|+.++-
T Consensus 396 ~~alr-------LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQ-------LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHhc-------cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 77764 34433 22223333444443 455555543
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.24 E-value=1.1 Score=34.98 Aligned_cols=86 Identities=8% Similarity=0.048 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 011472 156 IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 235 (485)
..++..+...+........++.+...+. .+...++.++..|++.+ .++..+.+.. .++.......++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666665553 35556666666666542 2333333331 12333444456666666
Q ss_pred CChHHHHHHHHHHH
Q 011472 236 SDGEGIDKIVAMME 249 (485)
Q Consensus 236 g~~~~a~~~~~~~~ 249 (485)
+-++++.-++..+.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 66666666665553
No 267
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=4.6 Score=41.61 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCcccHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCcccHHH
Q 011472 295 RAYDFVITQYAACGNKDDVLRVWKRYKQNLK----VYNRGYICVISSLLKFDGM--ESAEKIFEEWESRNLCHDIRIPNH 368 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 368 (485)
.-|..|+..|...|+.++|+++|.....+.. --...+..+++.+.+.+.. +...++-+...+....-...++..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 4578888888888888888888886554331 1112234466666666554 555555555554433222222222
Q ss_pred ------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc--------CCHHHHHHH--HHHHHH
Q 011472 369 ------------LIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN--------NQSEKGVEA--MKKALV 426 (485)
Q Consensus 369 ------------l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~--~~~~~~ 426 (485)
-+-.|......+-+..+++.+....-.++....+.++..|+.. ++.+++.+. -++...
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 2334666777888889999888765556777778887777542 122334443 233322
Q ss_pred hhccCCCCccCH--------HHHHHHHHHHHhcCCHhHHHHHHHHHhcC--------------CCCCHHHHHHHH-HHHh
Q 011472 427 LLEAGTRWKPSK--------ECLAACLGYYKKERDIEGADYFIKLLTGK--------------EIISADLQDRLL-NNIR 483 (485)
Q Consensus 427 ~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~-~~~~ 483 (485)
.+.....+.|.. ..|.-....+.+.|+.++|+.++-...+. +..+...|..++ .|..
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
Confidence 222333444432 22222233345888888888887666551 123566777777 6653
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=2.3 Score=37.78 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=88.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHH----HHHHHHhcCChH
Q 011472 164 CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSI----LLSACAAASDGE 239 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~ 239 (485)
..|+..+|...++++.+.- +-|..+++..=++|.-+|+.+.....++++... ..||...|.- ..-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3466666667777776653 236666666667777777777777777776654 2344433322 223445677777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc--cCCcchhHHHHHHHHHhcCCHHHHHHHH
Q 011472 240 GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMM--HNKFSRAYDFVITQYAACGNKDDVLRVW 317 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (485)
+|++.-++.. +.+. .|.-.-.++...+-..|++.++.++..+-...=. ...-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ral-qiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRAL-QINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhc-cCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7877777776 5444 4555555666777777777777777665332200 0000112223333455567788888888
Q ss_pred H
Q 011472 318 K 318 (485)
Q Consensus 318 ~ 318 (485)
+
T Consensus 271 D 271 (491)
T KOG2610|consen 271 D 271 (491)
T ss_pred H
Confidence 7
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.05 E-value=0.065 Score=31.96 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFV 300 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 300 (485)
++..+...|...|++++|+++|+++.+. .|.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 3455666677777777777777776666 44444444443
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.96 E-value=1.3 Score=39.72 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhcCCCCCChhHHHHH
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRL--YK----RFSHALQISMWMTKKSNFVLTPADVAIR 125 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
+..+.+.|.+.|+.-+..+|-+..-.... .. ....|.++|+.|++...+-.+++.+.+.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 55566788888888888776654443333 22 2346778888888877555555444444
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.89 E-value=0.14 Score=43.93 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR----------------GLLHKAETLIYKAQLRGTEPNVRTWYLMA 405 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (485)
+.++-....++.|.+.|+.-|..+|+.|+..+-+. .+-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444555566666667766777777766655432 12345889999999999999999999999
Q ss_pred HHHhccCCH
Q 011472 406 TGYLQNNQS 414 (485)
Q Consensus 406 ~~~~~~g~~ 414 (485)
.+|.+.+-.
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 999887754
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.83 E-value=0.57 Score=35.20 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc----ccHHHHHHHHHhcCC
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN----RGYICVISSLLKFDG 343 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~ 343 (485)
+...|+++.|++.|.+.... .|.....||.-.+++.-.|+.++|++-++...+-..+-. ..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34455555555555555544 333335555555555555555555555543221111111 122223333444555
Q ss_pred HHHHHHHHHHHHhcC
Q 011472 344 MESAEKIFEEWESRN 358 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~ 358 (485)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555554443
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.81 E-value=0.38 Score=42.03 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAAC 444 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l 444 (485)
++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+.....-|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3445566666666666666666666664322 566666666666666666666666666665444555666666665555
Q ss_pred HHH
Q 011472 445 LGY 447 (485)
Q Consensus 445 ~~~ 447 (485)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=94.69 E-value=2.4 Score=39.75 Aligned_cols=149 Identities=9% Similarity=-0.033 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHHHHh-hccCCcchhHHHHHHHHHhc---------CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC
Q 011472 273 LSDKALAVLRKSEVL-MMHNKFSRAYDFVITQYAAC---------GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 273 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 342 (485)
..+.|+.+|.+.... ...|.....|..+..++... ....+|.++-+...+..+.|......+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356778888887732 11333345555555544432 22344555555666677788888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhccCCHHHHHH
Q 011472 343 GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNV---RTWYLMATGYLQNNQSEKGVE 419 (485)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 419 (485)
+++.|...|++....++. ...+|........-.|+.++|...+++..+. .|.. ......++.|+.. ..+.|++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 899999999998876433 3445666666667789999999999997763 3542 2223334456554 4667777
Q ss_pred HHHHHH
Q 011472 420 AMKKAL 425 (485)
Q Consensus 420 ~~~~~~ 425 (485)
+|-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 765433
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.38 E-value=1.7 Score=32.93 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
++.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33334444444444444444321 12233333444444444444444444444444443
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.31 E-value=1.4 Score=34.13 Aligned_cols=66 Identities=12% Similarity=-0.131 Sum_probs=38.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNA 161 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~ 161 (485)
...++++++..+++.|.-.. |-.+..-.+-...+...|++++|.++|+++.+..+....-..|+..
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 34677777777777776543 2233344444566667777777777777777665443333334333
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.24 E-value=2.7 Score=34.89 Aligned_cols=87 Identities=11% Similarity=-0.084 Sum_probs=46.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLD-WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
|-..|-+..|.--|.+.. .+.|+ +.+||-+.--+...|+++.|.+.|+...+. .|....+...-.-++.--|++
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~ 149 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRY 149 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCch
Confidence 444555566665565555 33343 455666666666677777777777766654 222212222222233345666
Q ss_pred HHHHHHHHHHhhc
Q 011472 311 DDVLRVWKRYKQN 323 (485)
Q Consensus 311 ~~a~~~~~~~~~~ 323 (485)
.-|.+-+-..-..
T Consensus 150 ~LAq~d~~~fYQ~ 162 (297)
T COG4785 150 KLAQDDLLAFYQD 162 (297)
T ss_pred HhhHHHHHHHHhc
Confidence 6666555543333
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.22 E-value=1.7 Score=33.67 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh--HHHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNF-VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLP--SVYIALLNA 161 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~ll~~ 161 (485)
.+-.-.....+.|++++|.+.|+.+.....+ +..+..-..++.++.+.+++++|...+++.++..|+. ..|-..+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3444455567889999999999999987522 2334555566888999999999999999999988753 345556666
Q ss_pred HHhcCC
Q 011472 162 YACAKS 167 (485)
Q Consensus 162 ~~~~~~ 167 (485)
++.-.+
T Consensus 92 L~~~~~ 97 (142)
T PF13512_consen 92 LSYYEQ 97 (142)
T ss_pred HHHHHH
Confidence 554433
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.03 E-value=2.6 Score=33.81 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh-hCCHHHHHHHHHhh
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK-VQGIEQAASYFNCV 145 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~ 145 (485)
+.+.++.+.+.+++|+...+..+++.+.+.|++....+ +...+.++.+......++..-.+ ..-.+-|..++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34556667778999999999999999999998765544 44444333332222222211111 01122333333333
Q ss_pred hhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 146 PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 146 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
. ..+..++..+...|++-+|++........ +...-..++.+..+.+|...-..+|+-..+
T Consensus 89 ~------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 13455666677777777777777664332 222234455666666665555555555444
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.83 E-value=0.7 Score=40.45 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCcchHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE-----KGIDCDKYTFSI 227 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 227 (485)
.++..++..+...|+++.+...++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44556666677777777777777777776544 667777777777777777777777777654 356665555444
Q ss_pred HHH
Q 011472 228 LLS 230 (485)
Q Consensus 228 ll~ 230 (485)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.79 E-value=0.8 Score=37.43 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=53.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCcHHHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHD--IRIPNHLIDAYCRRGLLHKAETLIYKAQLR---GTEPNVRTWYLM 404 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~l 404 (485)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....|++..+...+.+.... |..++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 355566667777777777777777666544333 223455666666677777777666665432 111111111111
Q ss_pred --HHHHhccCCHHHHHHHHHHHHH
Q 011472 405 --ATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 405 --i~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.-.+...+++..|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 1123456677777777766654
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.78 E-value=0.78 Score=37.50 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
..+..+...|++.|+.++|.+.|.++.+....|. ...+-.+|......+++..+.....++...+.. +-.++...-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHH
Confidence 3577889999999999999999999998755554 456677888889999999999999888875111 111222211
Q ss_pred HHHHH--HHHhcCCHhHHHHHHHHHhc
Q 011472 442 AACLG--YYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 442 ~~l~~--~~~~~g~~~~a~~~~~~~~~ 466 (485)
..... .+...|++..|-+.|-....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 12222 34568899999888876643
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.73 E-value=8.5 Score=38.75 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKV 132 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (485)
+....-.+|-.|.|.|++++|.++.....+. +......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 4444567788889999999999988555544 234455566666666543
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.62 E-value=2.4 Score=32.10 Aligned_cols=65 Identities=9% Similarity=0.226 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGV 254 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 254 (485)
......+......|+-+.-.+++.++.+. -+++....-.+..+|.+.|+..++.+++.+.. +.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhch
Confidence 34455566666777777777777776642 34455566667777777777777777777777 6565
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.56 E-value=5.3 Score=35.82 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHH
Q 011472 345 ESAEKIFEEWESRNLCHDIRI-PNHLIDAYCRRG---LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEA 420 (485)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 420 (485)
+.++.+|+.+.+.|+..+-.. +.+-+-++.... ....+..+++.+.+.|+++....|..+.-...-.+..++..+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~ 239 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEE 239 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHH
Confidence 556677777777666544332 222222222211 1456777888888888887777666554443333333355555
Q ss_pred HHHHHHhhccCCCCc
Q 011472 421 MKKALVLLEAGTRWK 435 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~ 435 (485)
+.++.+.+...+++.
T Consensus 240 i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 240 IKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHhhCcccC
Confidence 555555444445544
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.39 E-value=3.2 Score=32.84 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 164 CAKSAEKAEIIMQQMRDRGLV-KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
+.++.+++..+++-+.-..+. |...++. ...+...|+|.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence 345555555555555433211 1111222 1223455556666666555544
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=1 Score=39.54 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011472 324 LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN---LCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRT 400 (485)
Q Consensus 324 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 400 (485)
.+.+..+...++.......+++.+...+-++.... ..|+...+ ..++.+.+ -+.++++.++..=+..|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33444455555555555566666666666655331 12222222 22333332 245566666666666677777777
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
++.+++.+.+.+++.+|.++.-.|+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777776666666655
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=3.5 Score=32.93 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHH-----HHHHHHcCChhhHHHHHHHHHHcCCCCCcc-hHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSM-----MNVYYQTGNYKKLDSLMHEMEEKGIDCDKY-TFS 226 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 226 (485)
..|...+. +.+.+..++|+.-|..+.+.|.. .|-.| .....+.|+...|...|++.-.....|-.. -..
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 34444444 34566777777777777776543 22222 223456677777777777776554444332 111
Q ss_pred HH--HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 227 IL--LSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 227 ~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
-| .-.+...|.++....-.+.+. ..+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 113456677777777666665 3333334444455666667777777777777776654
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.22 E-value=0.22 Score=28.06 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=16.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
+|..|...|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777777644
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.75 E-value=10 Score=36.81 Aligned_cols=383 Identities=10% Similarity=0.045 Sum_probs=221.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALL 159 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll 159 (485)
.+...|..++.--......+.+..+++.++... |.--.-+.-....=.+.|..+.+.++|++-...-| +...|...+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344556666665555555566777788877553 33323333334555688999999999999877654 345566655
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhC-CCC-CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH---
Q 011472 160 NAYA-CAKSAEKAEIIMQQMRDR-GLV-KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA--- 233 (485)
Q Consensus 160 ~~~~-~~~~~~~a~~~~~~m~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--- 233 (485)
..+. ..|+.+...+.|+..+.. |.. -+...|...|..-...+++.....+|+..++.- ...|+..-.-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 4443 468888889999888754 322 255568888888788889999999999988741 112222211111
Q ss_pred hc------CChHHHHHHHHHHHh-------------------cCCCCCCHH--HHHHHH-------HHHHhcCChHHHHH
Q 011472 234 AA------SDGEGIDKIVAMMEA-------------------DRGVVLDWT--VYATAA-------SGYVKAGLSDKALA 279 (485)
Q Consensus 234 ~~------g~~~~a~~~~~~~~~-------------------~~~~~~~~~--~~~~l~-------~~~~~~g~~~~A~~ 279 (485)
+. ...+.+.++-..... ..+-+.+.. ..+.+- ..+.......+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 112222221111110 111100000 001111 11112222333333
Q ss_pred HHHHHHHh------hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 280 VLRKSEVL------MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 280 ~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
.|+.-... +...++..+|..-+.--...|+.+.+.-+|+...-.+..-...|--.+.-....|+.+.|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33333322 112233456888888888899999999998876555554555566666666677999988888877
Q ss_pred HHhcCCCCCcccHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccCCHHHHH---HHHHHHHHhh
Q 011472 354 WESRNLCHDIRIPNHLIDAY-CRRGLLHKAETLIYKAQLRGTEPNVRT-WYLMATGYLQNNQSEKGV---EAMKKALVLL 428 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~~~~~~ 428 (485)
..+-..+ +......+-..+ -..|+++.|..+++.+.+.- |+..- -..-+...-+.|+.+.+. +++....+
T Consensus 357 ~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-- 431 (577)
T KOG1258|consen 357 ACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-- 431 (577)
T ss_pred hhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--
Confidence 7665443 322222222233 34689999999999998763 65332 222234456677777777 44444443
Q ss_pred ccCCCCccCHHHHHHHH----H-HHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 429 EAGTRWKPSKECLAACL----G-YYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 429 ~~~~~~~p~~~~~~~l~----~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
| .-+..+...+. + .+.-.++.+.|..++.++.+..+.+...|-.++
T Consensus 432 ----~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 432 ----G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred ----c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 2 12222222222 2 233468899999999999998888888777776
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=2.1 Score=37.71 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 011472 293 FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK----VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNH 368 (485)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (485)
...+...++..-....+++.++..+-.+..... |+ .+-...++.|.+ -+.+.+..++..=..-|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 345566666665666788888877765544332 32 233344454443 356688888888888899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
+++.+.+.+++.+|.++.-.|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888887654
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.69 E-value=4.4 Score=32.52 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 208 SLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
++++.+.+.+++|+...+..++..+.+.|++.... ++. ..++-+|.......+-.+ .+....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qll-q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLL-QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHH-hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34445555566666666667777777666654333 333 344445544433222211 12233344444444433
Q ss_pred hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 288 MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
- ...+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 L-----~~~~~~iievLL~~g~vl~ALr~ar~~~~~---~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L-----GTAYEEIIEVLLSKGQVLEALRYARQYHKV---DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc---ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 024455566666666666666666532211 111223455555555555444444444443
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.65 E-value=0.13 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.085 Sum_probs=17.9
Q ss_pred HhhhhcCCC-hHHHHHHHHHHHhcCCHHHHH
Q 011472 143 NCVPEKLKL-PSVYIALLNAYACAKSAEKAE 172 (485)
Q Consensus 143 ~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~ 172 (485)
++.++..|+ ..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444443 566777777777777776664
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.64 E-value=8.3 Score=38.33 Aligned_cols=151 Identities=12% Similarity=-0.051 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHH--HHH-HHhcCChHHHHHHHHHHHHh---hccCCcchhHHHHHHHHHhcC---
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATA--ASG-YVKAGLSDKALAVLRKSEVL---MMHNKFSRAYDFVITQYAACG--- 308 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~--- 308 (485)
...+.++++... +.|. ........+ ..+ +....+.+.|+.+|+.+... ....-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a-~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAA-KLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHH-hhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 456778888777 5454 222222222 222 34567888888888887661 101112345666666666643
Q ss_pred --CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHH
Q 011472 309 --NKDDVLRVWKRYKQNLKVYNRGYICVISSLLK-FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR----RGLLHK 381 (485)
Q Consensus 309 --~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 381 (485)
+.+.|+.++........|+...+...+..... ..+...|.++|....+.|.. + .+-.+..+|.. ..+...
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHH
Confidence 44557777765544444544433222222222 23456777777777666543 1 11112222211 234566
Q ss_pred HHHHHHHHHHcC
Q 011472 382 AETLIYKAQLRG 393 (485)
Q Consensus 382 a~~~~~~m~~~~ 393 (485)
|..++++..+.|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 666666666655
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.39 E-value=0.31 Score=27.45 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHE 212 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~ 212 (485)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.29 E-value=17 Score=38.42 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCccc----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRG----YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAY 373 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (485)
.-.++.--+.|.+.+|+.++. |+... |.+..+.+...+.+++|--.|+..-+. ..-+.+|
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~-------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYK-------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHHhcccchhhhheec-------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 333334444555555555543 44443 334444455666777776666654221 2345677
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhc
Q 011472 374 CRRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKE 451 (485)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 451 (485)
..+|++++|..+..++... -| ..+-..|+.-+...+++-+|-++..+... .|. -.+..+++.
T Consensus 976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~~-----~av~ll~ka 1039 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS--------DPE-----EAVALLCKA 1039 (1265)
T ss_pred HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CHH-----HHHHHHhhH
Confidence 7788888888877776541 12 12225666777788888888888777664 121 222334555
Q ss_pred CCHhHHHHHHHHHh
Q 011472 452 RDIEGADYFIKLLT 465 (485)
Q Consensus 452 g~~~~a~~~~~~~~ 465 (485)
..|++|..+.....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 56666665554444
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.84 E-value=3.2 Score=33.92 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 160 NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
+.....|.+|+|+.+++.....+.. ......-.+.+...|+-++|..-|+..++.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444445555555554444332211 011112223444455555555555554444
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.49 E-value=18 Score=37.01 Aligned_cols=230 Identities=14% Similarity=0.056 Sum_probs=117.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCC---CCCHH---HHHHHHH-HHHhcCChHHHHHHHHHHHHh---hccCCcchhHHHHHH
Q 011472 233 AAASDGEGIDKIVAMMEADRGV---VLDWT---VYATAAS-GYVKAGLSDKALAVLRKSEVL---MMHNKFSRAYDFVIT 302 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~ 302 (485)
....++++|..+..++....+. .+... .++.+-. .....|++++|.++.+..... ....+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467788888888777622222 11111 2222211 223568889999888887766 222334456777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhc-CCCCcc---cHHHHH--HHHHhcCCH--HHHHHHHHHHHhcCC--C----CCcccHHH
Q 011472 303 QYAACGNKDDVLRVWKRYKQN-LKVYNR---GYICVI--SSLLKFDGM--ESAEKIFEEWESRNL--C----HDIRIPNH 368 (485)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~li--~~~~~~~~~--~~a~~~~~~~~~~~~--~----~~~~~~~~ 368 (485)
+..-.|++++|..+....... ..-+.. .+..+. ..+...|.. .+.+..+........ + +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998888743221 112222 222222 234556632 233333333322211 1 11223444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 369 LIDAYCRR-GLLHKAETLIYKAQLRGTEPNVRTW--YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 369 l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
+..++.+. +...++..-+.-.......|-.... ..|+......|+.++|...+.++...+.+.. ..++...-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHh
Confidence 44444441 1122222222222222222222222 2667778889999999999988887522221 333433333333
Q ss_pred HH--HHhcCCHhHHHHHHHH
Q 011472 446 GY--YKKERDIEGADYFIKL 463 (485)
Q Consensus 446 ~~--~~~~g~~~~a~~~~~~ 463 (485)
.. ....|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 33 3457888777776665
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.12 E-value=17 Score=36.10 Aligned_cols=273 Identities=12% Similarity=-0.025 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHH-----HHHcCChhhHHHHHHHHHH-------cCCCCCcchHHHHHHHHHhc
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNV-----YYQTGNYKKLDSLMHEMEE-------KGIDCDKYTFSILLSACAAA 235 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 235 (485)
...|...++...+.| +...-..+..+ +....+.+.|+.+|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888887776 33333333332 3355688999999998877 44 333555666666664
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH--
Q 011472 236 S-----DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA---GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA-- 305 (485)
Q Consensus 236 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 305 (485)
. +.+.|..++.... +.|. |+.... +..+|... .+...|.++|...-..|. . .++-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA-~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~--~A~~~la~~y~~G 373 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAA-ELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH--I--LAIYRLALCYELG 373 (552)
T ss_pred CCCccccHHHHHHHHHHHH-hcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC--h--HHHHHHHHHHHhC
Confidence 3 6677999999888 7777 666653 33333322 357799999999887752 1 23333333332
Q ss_pred --hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH-HH---HH----
Q 011472 306 --ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLID-AY---CR---- 375 (485)
Q Consensus 306 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~---- 375 (485)
-..+...|..++.+......|...--...+..+.. ++.+.+.-.+..+.+.|.+ ...+-...+. .. ..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccc
Confidence 23367888888886554444432222233333333 6777777666666666553 2222111111 11 11
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHH---
Q 011472 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN----NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYY--- 448 (485)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 448 (485)
..+.+.+...+.+....| +......+.+.|... .+++.|...|..+..+ + ....-.+...+
T Consensus 452 ~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-----~----~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-----G----AQALFNLGYMHEHG 519 (552)
T ss_pred ccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-----h----hHHHhhhhhHHhcC
Confidence 124566666776666554 455555565555443 3588888888888774 3 22222222222
Q ss_pred -HhcCCHhHHHHHHHHHhcCCC
Q 011472 449 -KKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 449 -~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.-.. +..|.+++++..+.+.
T Consensus 520 ~g~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 520 EGIKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred cCcch-hHHHHHHHHHHHhcCc
Confidence 1233 6788888888777554
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.06 E-value=2.9 Score=34.46 Aligned_cols=82 Identities=22% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC
Q 011472 373 YCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER 452 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 452 (485)
..+.|+ +.|.+.|-++...+.--++..-..|...|. ..+.+++..++.++++. ...+-.+|+..+.+|+..+.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l--~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALEL--SNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHhc
Confidence 344444 567777777776654445555555554454 56788888888888875 33344667888888888888888
Q ss_pred CHhHHH
Q 011472 453 DIEGAD 458 (485)
Q Consensus 453 ~~~~a~ 458 (485)
+.+.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 887764
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=9 Score=32.66 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=12.1
Q ss_pred HHHHHhhCCHHHHHHHHHhhh
Q 011472 126 LDLIAKVQGIEQAASYFNCVP 146 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~ 146 (485)
..+|...+++++|...+.+..
T Consensus 38 AvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHH
Confidence 445555666666666555544
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.03 E-value=4.9 Score=33.00 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=38.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC-HHHHHHHHHH
Q 011472 374 CRRGLLHKAETLIYKAQLRGTEPN-----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS-KECLAACLGY 447 (485)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~ 447 (485)
.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|++-..++++. .|. ...+..-..+
T Consensus 106 F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------~pty~kAl~RRAea 177 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------NPTYEKALERRAEA 177 (271)
T ss_pred hhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------CchhHHHHHHHHHH
Confidence 3445555555555554442 1111 122333333445555555555555555431 221 1222222334
Q ss_pred HHhcCCHhHHHHHHHHHhcCCC
Q 011472 448 YKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
|.+...+++|++-|+++.+..|
T Consensus 178 yek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCc
Confidence 4555555555555555555444
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=19 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=17.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.|+..|...+++++|+.++-..+.
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377777888888888877766543
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.90 E-value=0.89 Score=24.94 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+|..+...|...|++++|++.|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666654
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.80 E-value=36 Score=39.20 Aligned_cols=150 Identities=9% Similarity=0.007 Sum_probs=88.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 011472 88 IIIKKFRLYKRFSHALQISMWM----TKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYA 163 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~ 163 (485)
.+..+-.+.+.+..|+..++.- .+.. .....+..+...|+..+++|....+...-. .+...++ -|-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~---~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE---TEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH---HHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCccHHH-HHHHHH
Confidence 4445566778888888888873 2221 222333333448888888888777766422 1333333 333455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHH-HHHHHhcCChHHHH
Q 011472 164 CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL-LSACAAASDGEGID 242 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~ 242 (485)
..|++..|...|+.+.+.+.. ...+++-++......+.++.+....+-.... ..+....++++ +.+-=+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 678899999999998877532 4667777777777777777777655544433 22233333322 22334566666655
Q ss_pred HHHH
Q 011472 243 KIVA 246 (485)
Q Consensus 243 ~~~~ 246 (485)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.57 E-value=1.4 Score=39.12 Aligned_cols=90 Identities=11% Similarity=-0.046 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
-..-|.++|.+++|...|.......+. |.+++..-..+|.+..++..|+.-....+..+- .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhh
Confidence 355566677777777777665543221 566666666666666666665555544443210 002233333333333444
Q ss_pred HHHHHHHHHHHH
Q 011472 414 SEKGVEAMKKAL 425 (485)
Q Consensus 414 ~~~A~~~~~~~~ 425 (485)
..+|.+-++..+
T Consensus 181 ~~EAKkD~E~vL 192 (536)
T KOG4648|consen 181 NMEAKKDCETVL 192 (536)
T ss_pred HHHHHHhHHHHH
Confidence 555555555554
No 307
>PRK09687 putative lyase; Provisional
Probab=90.35 E-value=13 Score=33.20 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCH----HHHHHHHHhhhhcCCChHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGI----EQAASYFNCVPEKLKLPSVY 155 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~ 155 (485)
.+|.......+..+...|. +++...+..+.+. .++......+.+++..|+. +++...+..+....++..+-
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence 4566667777777777765 3444444444443 3566666667777777653 45666666664455666666
Q ss_pred HHHHHHHHhcC
Q 011472 156 IALLNAYACAK 166 (485)
Q Consensus 156 ~~ll~~~~~~~ 166 (485)
...+.+++..+
T Consensus 109 ~~A~~aLG~~~ 119 (280)
T PRK09687 109 ASAINATGHRC 119 (280)
T ss_pred HHHHHHHhccc
Confidence 66666655543
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.32 E-value=0.36 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=13.5
Q ss_pred cCCcchhHHHHHHHHHhcCCHHHHH
Q 011472 290 HNKFSRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (485)
.|.+..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444455555555555555555553
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.31 E-value=12 Score=32.92 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhhhhc---CCChHHHHHHHHHHHh-cCC-HHHHHHHHHHHH-hCCCCCCcchHHHHHHHHHHcCChhhHH
Q 011472 134 GIEQAASYFNCVPEK---LKLPSVYIALLNAYAC-AKS-AEKAEIIMQQMR-DRGLVKKTIDYNSMMNVYYQTGNYKKLD 207 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~---~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 207 (485)
.+.+|.++|+..... -.|..+-..+++.... .+. ...--++.+-+. ..|-.++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 355666666632221 1356666666666655 222 222223333333 2345567777888888888888888888
Q ss_pred HHHHHHHHc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHH-----HHhcCCCCCCHHHHHHHHHHH
Q 011472 208 SLMHEMEEK-GIDCDKYTFSILLSACAAASDGEGIDKIVAM-----MEADRGVVLDWTVYATAASGY 268 (485)
Q Consensus 208 ~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 268 (485)
++++..... +..-|...|..+|+...+.||..-..++.+. ++ +.++..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwik-R~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIK-RNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEee-ecCCcCCHHHHHHHHHHH
Confidence 888887665 5666788888888888888888877776654 33 556655655544444433
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.10 E-value=4.5 Score=28.71 Aligned_cols=45 Identities=7% Similarity=-0.089 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 381 KAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
++.+-++.+....+.|++....+.+.+|-+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444433
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.06 E-value=0.95 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666666544
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.05 E-value=2.5 Score=30.26 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 433 RWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 433 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.+-|++.+..+.+++|.+.+|+..|.++|+-++.+
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555443
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.78 E-value=17 Score=34.31 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHH
Q 011472 304 YAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383 (485)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 383 (485)
+...|+++.+...+.-..........+...+++...+.|+++.|...-.-|....++ ++.+...-...--..|-+|++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 345555555555555444333444445555555555566666666555555544333 2222222222223344555666
Q ss_pred HHHHHHHH
Q 011472 384 TLIYKAQL 391 (485)
Q Consensus 384 ~~~~~m~~ 391 (485)
-.|+++..
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555544
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.61 E-value=1.3 Score=24.12 Aligned_cols=27 Identities=33% Similarity=0.660 Sum_probs=14.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.|..+...+...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555556666666666655554
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.46 E-value=17 Score=33.52 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
...+..+.|+++...+........ .|+...|..+... +.++++++....+.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356777889999855555544432 1344444444433 889999999988887654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.42 E-value=0.96 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMR 179 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~ 179 (485)
.+...+.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.21 E-value=20 Score=33.87 Aligned_cols=132 Identities=11% Similarity=-0.033 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhc-CCChHHHHHHHH
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEK-LKLPSVYIALLN 160 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ll~ 160 (485)
....-..-|.--...|+.-.|-+-+....+.. +-.|.........+...|+++.+...+...... +....+-..+++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r 365 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLR 365 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHH
Confidence 33334444555556788777765555555442 457777777788888999999999888776554 245667788899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
...+.|++++|..+-+.|....++ +...........-..|-++++...++++...
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999999999999999877666 5544444444445567788888888887654
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=8.7 Score=37.29 Aligned_cols=149 Identities=11% Similarity=0.097 Sum_probs=89.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 011472 96 YKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (485)
.|+++.|-.++-.+. .+..+.++..+.+.|-.++|+++- +|+.- -.....+.|+++.|.++.
T Consensus 599 rrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC-------CChhh---hhhhhhhcCcHHHHHHHH
Confidence 466666665444433 233444455566666666666542 23322 122334567777777766
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 011472 176 QQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVV 255 (485)
Q Consensus 176 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 255 (485)
.+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-...+ +.|.
T Consensus 661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~-~~g~- 723 (794)
T KOG0276|consen 661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK-KQGK- 723 (794)
T ss_pred Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH-hhcc-
Confidence 5432 455678888888888888888887776543 4456666677777766666555555 4444
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
.|.. ..+|...|+++++.+++..-
T Consensus 724 ~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 NNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 3332 23566678888888777664
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.13 E-value=2.2 Score=35.50 Aligned_cols=59 Identities=15% Similarity=-0.086 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
.+.-++.+.+.+.+.+++...+.-. +.++ .|...-..++..|+-.|++++|..-++-.-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qV-kakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQV-KAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHH-hcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555666666666666665555 3333 444455556666677777777665555443
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.11 E-value=4.9 Score=28.87 Aligned_cols=46 Identities=9% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
..+-++.+. ..++.|++....+.+.+|.+.+++..|.++|+-++.+
T Consensus 29 ~rrglN~l~-~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLF-GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHT-TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444 4444555555555555555555555555555555554
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.72 E-value=15 Score=31.80 Aligned_cols=203 Identities=10% Similarity=-0.014 Sum_probs=117.7
Q ss_pred CCCCCCcchHHHHHHHH-HHcCChhhHHHHHHHHHHcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhc--C--
Q 011472 181 RGLVKKTIDYNSMMNVY-YQTGNYKKLDSLMHEMEEKGIDCDKY---TFSILLSACAAASDGEGIDKIVAMMEAD--R-- 252 (485)
Q Consensus 181 ~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~-- 252 (485)
.+-.||+..-|.--..- .+..++++|+.-|++.++..-..... ....++....+.|++++.+..|.++..- .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 45567776644432221 23457888999998888753222222 3345677888888998888888887620 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc----chhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-
Q 011472 253 GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF----SRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY- 327 (485)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 327 (485)
.-..+....|++++..+...+.+--.++++.-.+......+ -.|-..|...|...+++.+..++++.+...+..+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 11133455677777666667777666666654433111112 2234567777888888888888877665544322
Q ss_pred -----------cccHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCcccHHHHHHH-----HHHcCCHHHHHH
Q 011472 328 -----------NRGYICVISSLLKFDGMESAEKIFEEWESRN-LCHDIRIPNHLIDA-----YCRRGLLHKAET 384 (485)
Q Consensus 328 -----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~g~~~~a~~ 384 (485)
...|..-|+.|...++-.....++++..... --|.+.... .|+- ..+.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 1346666777777777777777777665321 223333332 2332 234566666654
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=3.7 Score=39.62 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 011472 261 YATAASGYVKAGLSDKALAVLRK 283 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~ 283 (485)
|..|.++..+.|++..|.+.|..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHh
Confidence 44444444455555555444444
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.55 E-value=0.88 Score=24.97 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 439 ECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.+|..+..++...|++++|+..|++..+..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4678889999999999999999999987665
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.50 E-value=3.9 Score=29.00 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 344 MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
.-++.+-+..+....+.|++.+..+-+++|.+.+++..|.++|+-.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444555555555555555555555556655556666666555554
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.87 E-value=0.92 Score=24.52 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=7.9
Q ss_pred HhhCCHHHHHHHHHhhhhc
Q 011472 130 AKVQGIEQAASYFNCVPEK 148 (485)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~ 148 (485)
.+.|++++|.+.|+++...
T Consensus 11 ~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.80 E-value=60 Score=37.63 Aligned_cols=313 Identities=12% Similarity=0.024 Sum_probs=166.0
Q ss_pred HHHHhhCCHHHHHHHHHhh----hhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 127 DLIAKVQGIEQAASYFNCV----PEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
.+-.+++.+..|...+++- .+.......|..+...|+.-+++|....+...-.. +...+. -|......|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhcc
Confidence 3455788999999999983 22222334566666799999999998888775222 222333 3444667899
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHH
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVY-ATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~ 281 (485)
+..|...|+.+.+.+. +...+++-++..-...|.++.++...+-.. . ...+....+ +.=+.+-.+.+++|.....+
T Consensus 1465 ~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~-~-~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLI-I-NRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchh-h-ccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999997632 236678888887778888888877666654 2 222333333 33344446778888777766
Q ss_pred HHHHHhhccCCcchhHHHH--HHHHHhcCC--HHHHHHHHHHHhhcC-C---------CCcccHHHHHHHHHhcCCHHHH
Q 011472 282 RKSEVLMMHNKFSRAYDFV--ITQYAACGN--KDDVLRVWKRYKQNL-K---------VYNRGYICVISSLLKFDGMESA 347 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~-~---------~~~~~~~~li~~~~~~~~~~~a 347 (485)
. .. +..+|... .....+..+ .-.-.+..+..++.. . --...|..++.... .-+-
T Consensus 1542 ~---~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~----l~el 1609 (2382)
T KOG0890|consen 1542 S---DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL----LLEL 1609 (2382)
T ss_pred h---cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH----HHHH
Confidence 5 11 11233322 222222221 111112222111100 0 00012222222211 1111
Q ss_pred HHHHHHHHhcCCCCCccc------HHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCc-----HHHHHHHHHHHhccCCHH
Q 011472 348 EKIFEEWESRNLCHDIRI------PNHLIDAYCRRGLLHKAETLIYK-AQLRGTEPN-----VRTWYLMATGYLQNNQSE 415 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~-m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 415 (485)
....+... +..++..+ |..-+..-....+..+-.--+++ +......|+ ..+|-...+.....|.++
T Consensus 1610 ~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1610 ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 11111111 12222221 11111110111111111111111 112111222 566777777778899999
Q ss_pred HHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 416 KGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
.|...+-++.+. + .| ..+.-....+...|+...|+.+++...+...+
T Consensus 1688 ~A~nall~A~e~-----r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1688 RAQNALLNAKES-----R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhhhhc-----c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 999988888763 2 33 34555567788999999999999988865543
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.05 E-value=1.7 Score=25.07 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 399 RTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
.+++.+...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777776653
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.04 E-value=12 Score=30.80 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=53.7
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLP------SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 200 (485)
.-+.+.|++++|.+-|......-|.. ..|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 44556777777777777776665432 23555556677777777777777776665432 112222223456666
Q ss_pred CChhhHHHHHHHHHHc
Q 011472 201 GNYKKLDSLMHEMEEK 216 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~~ 216 (485)
.++++|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6677777777766664
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.85 E-value=16 Score=30.05 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHH-----HHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNS-----MMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
+...+...+++++|...++..... |....+.. |.+.....|.+++|++.++.....+..+ .....-..++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHH
Confidence 346678899999999999877654 33344443 4456778899999999998887765432 2233345678
Q ss_pred HhcCChHHHHHHHHHHHhcCC
Q 011472 233 AAASDGEGIDKIVAMMEADRG 253 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~ 253 (485)
...|+-++|..-|.... ..+
T Consensus 170 l~kg~k~~Ar~ay~kAl-~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKAL-ESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHH-Hcc
Confidence 89999999999999988 544
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.61 E-value=16 Score=29.69 Aligned_cols=108 Identities=21% Similarity=0.160 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH---hhCC-------HHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcC-
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIA---KVQG-------IEQAASYFNCVPEKLKL-PSVYIALLNAYACAK- 166 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~- 166 (485)
|+.|.+.++.-...+ |.+++.++.-..++. +... +++|..-|++....+|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 455666666655443 345555544433332 2222 34444445555555666 355555555554422
Q ss_pred ---C-------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 167 ---S-------AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 167 ---~-------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
+ +++|...|++..+. .|+...|+.-+... .+|-++..++.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 2 33344444444332 35666666555543 2344555555444
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.40 E-value=0.98 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=14.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44455555666666666666555443
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.38 E-value=1.3 Score=34.74 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=77.7
Q ss_pred CchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 011472 48 SSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLD 127 (485)
Q Consensus 48 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (485)
.....++..+.+.+.+.. +..+++.+...+...+....+.++..|++.++.+...++++ .... -....++.
T Consensus 8 ~~~~~vi~~~~~~~~~~~-l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~~-----yd~~~~~~ 78 (143)
T PF00637_consen 8 LEISEVISAFEERNQPEE-LIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSNN-----YDLDKALR 78 (143)
T ss_dssp SCSCCCHHHCTTTT-GGG-CTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSSS-----S-CTHHHH
T ss_pred cCHHHHHHHHHhCCCHHH-HHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cccc-----cCHHHHHH
Confidence 345566777777766666 66688888887777788889999999999988788777766 2211 22334556
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
.|.+.|.+++|.-++.++..... .+..+...++++.|.+.+ .+. ++...|..++..+...++
T Consensus 79 ~c~~~~l~~~a~~Ly~~~~~~~~-------al~i~~~~~~~~~a~e~~---~~~---~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKLGNHDE-------ALEILHKLKDYEEAIEYA---KKV---DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHTTTSHHHHHHHHHCCTTHTT-------CSSTSSSTHCSCCCTTTG---GGC---SSSHHHHHHHHHHCTSTC
T ss_pred HHHhcchHHHHHHHHHHcccHHH-------HHHHHHHHccHHHHHHHH---Hhc---CcHHHHHHHHHHHHhcCc
Confidence 66666777666666655433210 001122223333333221 111 356777777777665554
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.01 E-value=9.1 Score=31.68 Aligned_cols=72 Identities=13% Similarity=0.006 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChHHH
Q 011472 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK---GIDCDKYTFSILLSACAAASDGEGI 241 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a 241 (485)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|...+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433223333333333332 34444555554444432 1133344444444444444444433
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.64 E-value=24 Score=31.06 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
....|..+|.+.+|.++-++...... .+...|-.++..+...|+--.|.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444445555555555444444321 13444444555555555444444444433
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.86 E-value=9.2 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccC-----------CHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHH
Q 011472 381 KAETLIYKAQLRGTEPN-VRTWYLMATGYLQNN-----------QSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYY 448 (485)
Q Consensus 381 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 448 (485)
+|..-|++.+. +.|+ ..++..+..+|...+ .+++|.+.|+++.+ ..|+..+|..-+...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-------~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-------EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHH
Confidence 33344444444 3455 355555555554332 24556666666664 378888888777665
Q ss_pred H
Q 011472 449 K 449 (485)
Q Consensus 449 ~ 449 (485)
.
T Consensus 124 ~ 124 (186)
T PF06552_consen 124 A 124 (186)
T ss_dssp H
T ss_pred H
Confidence 4
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.42 E-value=3.2 Score=37.03 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=41.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVL-DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
+-|.+.|.+++|+..|.... . ..| +..++..-..+|.+..++..|..-....... ...-+.+|..-+.+-...|
T Consensus 105 N~yFKQgKy~EAIDCYs~~i-a--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI-A--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhccchhHHHHHhhhhh-c--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666555 2 223 5555655666666666666665555554433 1112233333333333444
Q ss_pred CHHHHHHHHH
Q 011472 309 NKDDVLRVWK 318 (485)
Q Consensus 309 ~~~~a~~~~~ 318 (485)
...+|.+-++
T Consensus 180 ~~~EAKkD~E 189 (536)
T KOG4648|consen 180 NNMEAKKDCE 189 (536)
T ss_pred hHHHHHHhHH
Confidence 4444444433
No 337
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.10 E-value=29 Score=30.63 Aligned_cols=118 Identities=11% Similarity=0.084 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHH-cCCCCCcchHHHHHHHHHh-cC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011472 201 GNYKKLDSLMHEMEE-KGIDCDKYTFSILLSACAA-AS-DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 277 (485)
..+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+....+-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334555555552211 1233344444444444433 11 22223334444443334445555555666666666666666
Q ss_pred HHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 278 LAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.++++.......+..|...|..++..-...|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666655442244445566666666666666555555444
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.79 E-value=3.3 Score=22.50 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566667777777777777777665
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.51 E-value=44 Score=32.15 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 011472 151 LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS 230 (485)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 230 (485)
|....-+++..++....+.-...+-.+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555666777777666666667777776654 2556667777777666 556666677766665433 3333333444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLD------WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
.|-+ ++.+.+..+|..+. ..-+ |. ...|.-+... -..+.|..+.+..++........-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~-yrfI-~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL-YRFI-PRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHH-HHhc-chhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4433 66667777776665 3222 21 1233333321 13455556666666555532333334555555666
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 337 (485)
....++.+|++++..+.+...-|..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 666667777776665444444444444444443
No 340
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.17 E-value=24 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=14.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChH
Q 011472 77 EGRPLDMEQLRIIIKKFRLYKRFS 100 (485)
Q Consensus 77 ~~~~~~~~~~~~ll~~~~~~~~~~ 100 (485)
.|..++...++.++..+.+..-..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~ 25 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASK 25 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCch
Confidence 356667777777776665554333
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.16 E-value=37 Score=31.05 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---cCCHHHHHHHH
Q 011472 345 ESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ---NNQSEKGVEAM 421 (485)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 421 (485)
+.-..+++++++..+ -+......++..+.+..+.++..+-++++...... +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 444566666666533 24555666666777777777777777777765321 46666666655433 23455666666
Q ss_pred HHHHHhhccCC-CC------ccC--H---HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 422 KKALVLLEAGT-RW------KPS--K---ECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 422 ~~~~~~~~~~~-~~------~p~--~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
.+.++.+.... +. .|+ . ..+..+...+..+|-.+.|..+++-+.+.+.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55555422111 11 111 1 1222233344567888888888887777664
No 342
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=61 Score=33.44 Aligned_cols=254 Identities=13% Similarity=0.112 Sum_probs=117.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH----HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 011472 89 IIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR----LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC 164 (485)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (485)
+=+.|...|+++.|++.-+.- |+....+ .+.|.+.+++..|.++|.++.+ .|..+.--+..
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------hHHHHHHHHHh
Confidence 334556667777777653322 3333333 6677788899999998887743 33444444445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHH-----HHHHHH-HcCChh----hHHHHHHHHHH--------c-CCCCCcchH
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNS-----MMNVYY-QTGNYK----KLDSLMHEMEE--------K-GIDCDKYTF 225 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~-~~~~~~----~a~~~~~~m~~--------~-g~~p~~~~~ 225 (485)
..+.+ +++.|-.=+-..++|...+-.. ++..|. +.++.+ ++..-++.-.+ . ...-+....
T Consensus 429 ~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 429 INQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred cCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 55544 4444322222223333322222 222222 222222 22222211110 0 011122223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 226 SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 226 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
.+....+...|+.+.+..+-.-+. + |..++..+...+.+++|++++..-.. + ...-...-. .
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~-d---------~~~vv~~~~q~e~yeeaLevL~~~~~-----~--el~yk~ap~-L 569 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK-D---------YEFVVSYWIQQENYEEALEVLLNQRN-----P--ELFYKYAPE-L 569 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHHHHHHhccc-----h--hhHHHhhhH-H
Confidence 334445556667666665555554 2 34477788888888888888776311 1 111100000 1
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD---GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL 378 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 378 (485)
....+.+....|.... ...+......++..+.+.+ ....+...++-....-..-+...+|.++..|++..+
T Consensus 570 i~~~p~~tV~~wm~~~--d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 570 ITHSPKETVSAWMAQK--DLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HhcCcHHHHHHHHHcc--ccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 1122222222222222 2222222333444444432 334444444444433333467778888888876544
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.74 E-value=31 Score=29.95 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=155.0
Q ss_pred CChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCcch---HHHHHHHHHHcCChhhHHHHHHHHHHc---CCC--C
Q 011472 150 KLPSVYIALLNA-YACAKSAEKAEIIMQQMRDRGLVKKTID---YNSMMNVYYQTGNYKKLDSLMHEMEEK---GID--C 220 (485)
Q Consensus 150 ~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~--p 220 (485)
||+..=|..-.. -.+...+++|+.-|++..+....-..+- ...++....+.+++++....|.+|+.- .+. -
T Consensus 24 pdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred CCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 665543332221 1245689999999999987643323333 345788889999999999999998642 222 2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC---c
Q 011472 221 DKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW----TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK---F 293 (485)
Q Consensus 221 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 293 (485)
+..+.|+++.-.....+.+....+|+.-.....-.-+. .|-+.|...|...+.+.+..++++++........ |
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 34567778877777777777766665544111111222 2446788889999999999999999988742211 1
Q ss_pred -------chhHHHHHHHHHhcCCHHHHHHHHHHH--hhcCCCCcccHHHHHHHH-----HhcCCHHHHHHH-HHHHH---
Q 011472 294 -------SRAYDFVITQYAACGNKDDVLRVWKRY--KQNLKVYNRGYICVISSL-----LKFDGMESAEKI-FEEWE--- 355 (485)
Q Consensus 294 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~-~~~~~--- 355 (485)
...|..=++.|....+-.....+|+.. .....|.+.... +|+-| .+.|++++|..- |+...
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 235777788888888888888888842 233345554333 34444 355778777644 33333
Q ss_pred hcCCCCCccc---HHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011472 356 SRNLCHDIRI---PNHLIDAYCRRGL----LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKK 423 (485)
Q Consensus 356 ~~~~~~~~~~---~~~l~~~~~~~g~----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 423 (485)
+.|-+ .-.+ |-.|...+.+.|- -.+|. -..-.|.....+.++.+|..+ ++.+-.++++.
T Consensus 263 EsGsp-RRttCLKYLVLANMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 263 ESGSP-RRTTCLKYLVLANMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred ccCCc-chhHHHHHHHHHHHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 23322 2222 3344444444331 11111 011234566777888888654 44444444443
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.65 E-value=0.52 Score=37.04 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=24.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVA 246 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 246 (485)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544433344444555555555544454444444
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.64 E-value=21 Score=27.93 Aligned_cols=52 Identities=8% Similarity=0.035 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 340 KFDGMESAEKIFEEWESRNLCHDIR-IPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
..++.+++..+++.+.-.. |+.. .-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3667777777777776542 2222 11222344566778888888888777654
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=67 Score=33.63 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 466777788888888888776555566666777776654
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.04 E-value=22 Score=31.14 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--CChHHHHHHHHHHHh
Q 011472 87 RIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL--KLPSVYIALLNAYAC 164 (485)
Q Consensus 87 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ll~~~~~ 164 (485)
..=|.+++..++|.+++...-+-.+.. -...|.....-|-.|.+.+.+..+.++-....... .+..-|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 344678888888888776554444333 34667777777888888888888887777665542 223346666655544
Q ss_pred -----cCCHHHHHHHH
Q 011472 165 -----AKSAEKAEIIM 175 (485)
Q Consensus 165 -----~~~~~~a~~~~ 175 (485)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 68888887776
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.66 E-value=14 Score=30.90 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----hHHHHHHHHH
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL----PSVYIALLNA 161 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~ll~~ 161 (485)
.+..++.+.+.+..++|+...+.-.+.. |.+.....+++..++-.|++++|..-++-.-...|+ ...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666677777777666655554 344555556666666677777666655554443332 3445555543
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.35 E-value=18 Score=31.59 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHcCChhhHHHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEK--GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK- 270 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 270 (485)
|.+++..++|.+++.+.-+--+. .++|. ....-|-.|.+.+++..+.++-..-....+- -+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHH
Confidence 34445555555554443333221 12222 2333344456666666666555554422111 222334445444433
Q ss_pred ----cCChHHHHHHH
Q 011472 271 ----AGLSDKALAVL 281 (485)
Q Consensus 271 ----~g~~~~A~~~~ 281 (485)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666665
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.32 E-value=4.4 Score=24.05 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666666666666666666653
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.97 E-value=73 Score=32.99 Aligned_cols=222 Identities=9% Similarity=0.012 Sum_probs=116.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcc-------hHHHHHH-HHHHcCChhhHHHHHHHHHHc----CCCCCcchHHHHHH
Q 011472 163 ACAKSAEKAEIIMQQMRDRGLVKKTI-------DYNSMMN-VYYQTGNYKKLDSLMHEMEEK----GIDCDKYTFSILLS 230 (485)
Q Consensus 163 ~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 230 (485)
....++++|..+..++...=..|+.. .|+.|-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34688999988888876442222221 2333322 234568889999888887664 12234445566667
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHH---HHH--HHHHHhcCC--hHHHHHHHHHHHHhhcc-C----CcchhHH
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVY---ATA--ASGYVKAGL--SDKALAVLRKSEVLMMH-N----KFSRAYD 298 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~--~~~A~~~~~~~~~~~~~-~----~~~~~~~ 298 (485)
+..-.|++++|..+.++.. +..-..+...+ ..+ ...+...|+ +.+....|......... . .-..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778899999988876665 32222333332 222 223445563 33334444444333111 1 1123344
Q ss_pred HHHHHHHhcCCHHHHHHHHH---HHhhcCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc-HHH--
Q 011472 299 FVITQYAACGNKDDVLRVWK---RYKQNLKVYNR----GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRI-PNH-- 368 (485)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-- 368 (485)
.+..++.+ .+.+..-.. .......|... .+..++......|+++.|...+.++......+...+ |.+
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333322222 11112222221 123667777888999999998888876544433222 211
Q ss_pred -HHH--HHHHcCCHHHHHHHHHH
Q 011472 369 -LID--AYCRRGLLHKAETLIYK 388 (485)
Q Consensus 369 -l~~--~~~~~g~~~~a~~~~~~ 388 (485)
.+. .....|+..++.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 121 23346777777666555
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.96 E-value=18 Score=26.00 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 175 (485)
...++|..+-+++...+ -..+.+..+ +..+...|++++|..+.+... .||...|-+|-.. +.|..+++..-+
T Consensus 19 HcHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl 91 (115)
T TIGR02508 19 HCHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRL 91 (115)
T ss_pred hHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHH
Confidence 34567777777776654 122222222 455566777777777766664 3666666555432 455555555555
Q ss_pred HHHHhCC
Q 011472 176 QQMRDRG 182 (485)
Q Consensus 176 ~~m~~~~ 182 (485)
.+|...|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 5555554
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=29 Score=29.65 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=45.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDWTV-YATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
|.....++.|+..|.+.. -+.|+..+ |+.=+.++.+..+++.+..--....+. .+..+.....+..+......+
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 444455666666555555 33455433 345555666666666666655555543 333334444455555666666
Q ss_pred HHHHHHHHH
Q 011472 311 DDVLRVWKR 319 (485)
Q Consensus 311 ~~a~~~~~~ 319 (485)
++|+..+..
T Consensus 95 ~eaI~~Lqr 103 (284)
T KOG4642|consen 95 DEAIKVLQR 103 (284)
T ss_pred cHHHHHHHH
Confidence 666666663
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.46 E-value=5.5 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMR 179 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 179 (485)
+|..+...|...|++++|...|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.01 E-value=4.1 Score=20.76 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 011472 158 LLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~ 175 (485)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444433
No 356
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.17 E-value=39 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=18.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcH
Q 011472 372 AYCRRGLLHKAETLIYKAQLRGTEPNV 398 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 398 (485)
.-+..+++.+|.++|++.....+..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 334567788888888887765554443
No 357
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.11 E-value=84 Score=32.03 Aligned_cols=310 Identities=11% Similarity=0.035 Sum_probs=133.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 011472 94 RLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
.+.|++..+.++...+.. .++.|-.--..+..-.....+++...++++-.........-...+..+.+.+++...++
T Consensus 44 ~~~g~~~~~~~~~~~l~d---~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~ 120 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKD---YPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA 120 (644)
T ss_pred HHCCCHHHHHHHHHhccC---CCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH
Confidence 455667776666665532 12221111111111112334555555555544432222333344455556677776666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH--HHHHHHHHhc
Q 011472 174 IMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGI--DKIVAMMEAD 251 (485)
Q Consensus 174 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a--~~~~~~~~~~ 251 (485)
.+.. .+.+...-.....+....|+.++|......+=..|-. ....+..++..+.+.|.+... .+=++.+. .
T Consensus 121 ~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al-~ 193 (644)
T PRK11619 121 FSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAM-K 193 (644)
T ss_pred hcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H
Confidence 2211 1224444455566666777766666555555333322 344566666666655543321 11122222 1
Q ss_pred CCC-----------CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH--hcCCHHHHHHHH
Q 011472 252 RGV-----------VLDWT-VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA--ACGNKDDVLRVW 317 (485)
Q Consensus 252 ~~~-----------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 317 (485)
.|- .++.. ....++..+ .+...+...+.. .+++...-..++-++. ...+.+.|...+
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~------~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~ 264 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART------TGPTDFTRQMAAVAFASVARQDAENARLMI 264 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc------cCCChhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence 111 01101 111111111 111111111111 1111111111111221 234557777777
Q ss_pred HHHhhcCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 318 KRYKQNLKVYN----RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 318 ~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
........-+. .+...+.......+..+++...++...... .+......-+..-...++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 75432222111 122333333333322445555555433221 234444445555557777777777777764321
Q ss_pred CCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
.-...-.-=+..++...|+.++|..+|+.+.
T Consensus 343 -~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 343 -KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred -ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1122222334555566788888888887764
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.75 E-value=66 Score=30.62 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=6.4
Q ss_pred HhhCCHHHHHHHHH
Q 011472 130 AKVQGIEQAASYFN 143 (485)
Q Consensus 130 ~~~~~~~~A~~~~~ 143 (485)
+..|+.+.+..+++
T Consensus 10 ~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 10 ILFGELDIARRLLD 23 (413)
T ss_pred HHhCCHHHHHHHHH
Confidence 34455544444443
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.71 E-value=10 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHHHHHHHhhccCCCCcc-C-HHHHHHHHHHHHhcCCHhHHHHHH
Q 011472 410 QNNQSEKGVEAMKKALVLLEAGTRWKP-S-KECLAACLGYYKKERDIEGADYFI 461 (485)
Q Consensus 410 ~~g~~~~A~~~~~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~ 461 (485)
...+.++|+..|..+++. ...| + ..++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k-----~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-----ITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999874 2222 2 256777888999999988887653
No 360
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.54 E-value=93 Score=31.72 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=23.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHH
Q 011472 372 AYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
.+...|....|...+..+... .+......+...-...|.++.++...
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344556666666666665553 23333333444444455555544433
No 361
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.05 E-value=56 Score=28.94 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.....|..+|.+.+|.++.+..... .+.+...+-.++..+...|+--.+.+-++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 3455666777777777777776665 45555666777777777777666665555
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.56 E-value=5.1 Score=23.79 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=8.1
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011472 160 NAYACAKSAEKAEIIMQQMR 179 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~ 179 (485)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444333
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.24 E-value=99 Score=31.38 Aligned_cols=195 Identities=10% Similarity=0.063 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhH--HHHH--HHHHH-hhCCHHHHHHHHHhhhhcC--CCh-
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPAD--VAIR--LDLIA-KVQGIEQAASYFNCVPEKL--KLP- 152 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~A~~~~~~~~~~~--~~~- 152 (485)
.+...|..+|. .|+..++.+.+.. +++|.. ...+ ...+. ...+++.|+..+++..... ++.
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~--~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQF--KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34455555554 3667777777543 344432 2222 44444 6788999999998764432 221
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCcchHHHH-HHHHHHcCChhhHHHHHHHHHHcC---CCC
Q 011472 153 ----SVYIALLNAYACAKSAEKAEIIMQQMRDRG----LVKKTIDYNSM-MNVYYQTGNYKKLDSLMHEMEEKG---IDC 220 (485)
Q Consensus 153 ----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~g---~~p 220 (485)
.+-..++..+.+.+... |...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+...- ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 22334566777766655 888888866431 11122223333 222333478999999998886642 223
Q ss_pred CcchHHHHHHHHH--hcCChHHHHHHHHHHHh---cC-----CCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHh
Q 011472 221 DKYTFSILLSACA--AASDGEGIDKIVAMMEA---DR-----GVVLDWTVYATAASGYV--KAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 221 ~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~---~~-----~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 287 (485)
-..++..++.+.. +.+..+++.+.++++.. .. .-.|...+|..+++.++ ..|+++.+...++++...
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334444444433 44556667777666631 11 01245566666666544 567777777666665443
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.80 E-value=30 Score=33.70 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCh-hHHHHHHHHHHhhCCHHHHHHHHHh
Q 011472 69 PLLDQWVEEGRPLD--MEQLRIIIKKFRL-YKRFSHALQISMWMTKKSNFVLTP-ADVAIRLDLIAKVQGIEQAASYFNC 144 (485)
Q Consensus 69 ~~~~~~~~~~~~~~--~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 144 (485)
..+..|...|..-+ ...+..+..+|.+ .|...+|+..+.....--. +... .....+...+-+.|...+|.-++..
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-~h~kdi~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSS-RHNKDIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-cccccchhhhHHHHHHHcccccchhheeeh
Confidence 35566666665433 3445566666654 5888899888887765431 1122 2333446677788988888888766
Q ss_pred hhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011472 145 VPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRG 182 (485)
Q Consensus 145 ~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 182 (485)
.....+. ..-+..+..+++..+++...+..|+...+.|
T Consensus 275 A~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 275 ALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred hccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 6554332 1225567777778888887777787766554
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.24 E-value=56 Score=28.05 Aligned_cols=117 Identities=9% Similarity=-0.097 Sum_probs=64.8
Q ss_pred HHhhCCHHHHHHHHHhhhhcCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHHcCChhhH
Q 011472 129 IAKVQGIEQAASYFNCVPEKLKLPSV-YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI-DYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a 206 (485)
|....+++.|...|.+.+..+|+..+ |+.-+-++.+..+++.+..--.+.++. .||.. ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 44455667777777777777777643 455666666777777666555554443 23332 344455556667777777
Q ss_pred HHHHHHHHHc----CCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 011472 207 DSLMHEMEEK----GIDCDKYTFSILLSACAAASDGEGIDKIVAM 247 (485)
Q Consensus 207 ~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 247 (485)
+..+.+..+. .+.|-......|..+--+.-......++.+.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7777776432 2333334445554443333334444444433
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.85 E-value=36 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=25.9
Q ss_pred CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHH
Q 011472 433 RWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 433 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 478 (485)
.+-|++.....-+++|.+.+|+..|.++|+-++.+-.+....|..+
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5566666666666666666666666666666555443333334333
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.74 E-value=30 Score=24.67 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhH
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAY 297 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 297 (485)
+...+...|++++|...+++.........|..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l 80 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLARENGDRRCL 80 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 4445566677777777777776653333333333
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.54 E-value=1.1e+02 Score=31.09 Aligned_cols=178 Identities=10% Similarity=-0.032 Sum_probs=100.0
Q ss_pred HHHHHHH-HcCCCCCHH--HHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCChh-----HHHHHHHHHHhhCCHHHHH
Q 011472 69 PLLDQWV-EEGRPLDME--QLRIIIKKFR-LYKRFSHALQISMWMTKKSNFVLTPA-----DVAIRLDLIAKVQGIEQAA 139 (485)
Q Consensus 69 ~~~~~~~-~~~~~~~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~A~ 139 (485)
.+++... +...+|... ++-.+...+. ...++++|...+++...... ..+-. ....++..+.+.+... |.
T Consensus 42 ~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 42 KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 3445555 334444333 3445555555 66889999999998765431 11211 1223355666666666 99
Q ss_pred HHHHhhhhcCCC----h--HHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHH--HcCChhhHH
Q 011472 140 SYFNCVPEKLKL----P--SVYIAL-LNAYACAKSAEKAEIIMQQMRDRG---LVKKTIDYNSMMNVYY--QTGNYKKLD 207 (485)
Q Consensus 140 ~~~~~~~~~~~~----~--~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~--~~~~~~~a~ 207 (485)
..+++..+...+ . ..|.-+ +..+...+++..|++.++.+.... ..|-...+-.++.+.. +.+..+++.
T Consensus 120 ~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 120 KNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVL 199 (608)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 988887665311 1 222323 223333479999999999886542 2234444445555543 456677788
Q ss_pred HHHHHHHHcCC---------CCCcchHHHHHHHH--HhcCChHHHHHHHHHH
Q 011472 208 SLMHEMEEKGI---------DCDKYTFSILLSAC--AAASDGEGIDKIVAMM 248 (485)
Q Consensus 208 ~~~~~m~~~g~---------~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~ 248 (485)
+.++++..... .|-..+|..++..+ ...|+++.+...++++
T Consensus 200 ~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 200 ELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887744322 23345666666644 4567766665554443
No 369
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=73.44 E-value=22 Score=28.94 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHH---------HHHHHHHhhCCHHHHHHHHHhhhh
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVA---------IRLDLIAKVQGIEQAASYFNCVPE 147 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~A~~~~~~~~~ 147 (485)
.+.|+.+|+.+.+.-. .|++.. ..+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~---~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFS---LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4567777777776541 111111 113345555555555555555554
No 370
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=72.63 E-value=76 Score=28.89 Aligned_cols=145 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHc-CCCCC--HHHHHHHHHHH-HhcCC-----hHHHHHHHHHHHhcCCC---CCChhHHHHHHHHHHhhCC
Q 011472 67 MVPLLDQWVEE-GRPLD--MEQLRIIIKKF-RLYKR-----FSHALQISMWMTKKSNF---VLTPADVAIRLDLIAKVQG 134 (485)
Q Consensus 67 ~~~~~~~~~~~-~~~~~--~~~~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 134 (485)
+..++....+. |..+. .......++.. ....- .+.|.+.|+.....+.. .++|+....+.....+.|.
T Consensus 105 ~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~ 184 (324)
T PF11838_consen 105 VRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGD 184 (324)
T ss_dssp HHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH-HHcCChhhHHHHHHH
Q 011472 135 IEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVY-YQTGNYKKLDSLMHE 212 (485)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 212 (485)
.+.-..+++..... ++......++.+++...+.+...++++.....+..++...+..+.... ....-.+.+.+++..
T Consensus 185 ~~~~~~l~~~~~~~-~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 185 EEEWDFLWELYKNS-TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHHTT-STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHhcc-CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=1.2e+02 Score=31.06 Aligned_cols=154 Identities=11% Similarity=0.032 Sum_probs=82.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCH
Q 011472 89 IIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSA 168 (485)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 168 (485)
=++.+.+.+.+++|+++.+.....-............+..+...|++++|....-.|.. .+..-|..-+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 36777888888888887776654321001223444456777778888888877766665 2445555555555555554
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHH---HH--------------HcCCCCCcchHHHHHHH
Q 011472 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE---ME--------------EKGIDCDKYTFSILLSA 231 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---m~--------------~~g~~p~~~~~~~ll~~ 231 (485)
.....+ ++.-....+...|..++..+.. .+...-.++..+ +. +..-+ +...-..|+..
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~La~L 514 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVLAHL 514 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHHHHH
Confidence 432222 2222122344456666655554 221111111110 00 00011 11223347777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011472 232 CAAASDGEGIDKIVAMME 249 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~ 249 (485)
|...++++.|..++-..+
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 888888888888887776
No 372
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.17 E-value=30 Score=30.18 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLL 464 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (485)
.+..-|...|++++|.++|+.+....+...=..+...+...+..+..+.|+.+....+-=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45566778888888888888876543333334455666777777777888887776654443
No 373
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.05 E-value=30 Score=26.17 Aligned_cols=45 Identities=7% Similarity=-0.088 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..+-++.+....+.|++.....-+.+|-+.+++..|+++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555566667777777777777777777777777776665
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.59 E-value=9.8 Score=19.40 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
|..+...+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444555555555555555444
No 375
>PRK09687 putative lyase; Provisional
Probab=71.48 E-value=75 Score=28.35 Aligned_cols=73 Identities=8% Similarity=-0.077 Sum_probs=34.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011472 327 YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406 (485)
Q Consensus 327 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (485)
+..+-...+.++.+.++. .|...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||...-...+.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~ 275 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAID 275 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHH
Confidence 444445555555555553 3333333333321 1 223455566666653 5666666665522 45554444444
Q ss_pred HH
Q 011472 407 GY 408 (485)
Q Consensus 407 ~~ 408 (485)
++
T Consensus 276 a~ 277 (280)
T PRK09687 276 KL 277 (280)
T ss_pred HH
Confidence 44
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.58 E-value=27 Score=29.06 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=26.6
Q ss_pred CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 433 RWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 433 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
...|+..+|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777766555
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.19 E-value=1.2e+02 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 011472 84 EQLRIIIKKFRLYKRFSHALQISMW 108 (485)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~ 108 (485)
..|-..+..+.-+|.+++|.++++.
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444467777777888888877743
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.12 E-value=17 Score=24.77 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=29.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHH
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
...+.++|+..|....+.-..|. -.++..++.+|+.-|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766433322 345566677777777777766553
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.57 E-value=11 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.091 Sum_probs=12.1
Q ss_pred CHhHHHHHHHHHhcCCCCCHHHHHHH
Q 011472 453 DIEGADYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 453 ~~~~a~~~~~~~~~~~~~~~~~~~~l 478 (485)
+.+.|..+|+++.+..+.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34445555555554444444444433
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.51 E-value=30 Score=33.79 Aligned_cols=99 Identities=11% Similarity=-0.017 Sum_probs=73.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCH
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDI 454 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 454 (485)
-.|+...|...+....-....-..+....|.....+.|..-.|-.++.+.+.. ....+.++..+.+++.-..++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhcchhHHHHhhh
Confidence 36888888888877654322212344455666677777888888998888863 244556788888999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 455 EGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 455 ~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
+.|++.|+...+..+..+..-+.|.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999988777766666
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.46 E-value=36 Score=23.82 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHH
Q 011472 102 ALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAE 172 (485)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 172 (485)
+.++++.+.+.+. ++.+...-+-..-...|+.+.|.++++.+. ++| ..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-QKE--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcCchhhhh
Confidence 4456666666662 344444443333345577777777777777 443 45667777777766655443
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.93 E-value=86 Score=28.03 Aligned_cols=116 Identities=18% Similarity=-0.040 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc-----C--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----cc
Q 011472 343 GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR-----G--LLHKAETLIYKAQLRGTEPNVRTWYLMATGYL----QN 411 (485)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 411 (485)
+..+|...|+...+.|..+.......+...|... - +...|...+.++...+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 4455555555555554432211122222233221 0 2236777777777665 3333344444442 23
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC---------------CHhHHHHHHHHHhcCCCC
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER---------------DIEGADYFIKLLTGKEII 470 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~ 470 (485)
.+.++|..+|.++.+. |. ......+. .+...| +...|...+......+.+
T Consensus 205 ~d~~~A~~wy~~Aa~~-----g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQ-----GD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHC-----CC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 4778888888888874 43 22222222 334333 777888888888887763
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.04 E-value=17 Score=22.66 Aligned_cols=27 Identities=19% Similarity=-0.096 Sum_probs=12.1
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 446 GYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
-++.+.|++++|.+..+.+.+..|.+.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 344455555555555555554444333
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.03 E-value=45 Score=24.42 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=41.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
.....++|..+.+++...+. ..+....+ +..+.+.|++++| +..-.....||...|-+|-. .+.|--+++..
T Consensus 18 G~HcH~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~ 90 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALES 90 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHH
Confidence 34566777777777777651 23333322 4555667777777 22222222355555554433 35666666666
Q ss_pred HHHHHHhCC
Q 011472 174 IMQQMRDRG 182 (485)
Q Consensus 174 ~~~~m~~~~ 182 (485)
-+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 666665543
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.99 E-value=31 Score=28.70 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
..++.+......+.+.+-....|+..+|..++.++...|+.++|.+...++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333433333333333322244567777777777777777777777777766654
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.47 E-value=49 Score=27.04 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCC
Q 011472 405 ATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERD 453 (485)
Q Consensus 405 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 453 (485)
+..|.+.|.+++|.+++++..+ .|+......-+....+..|
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~--------d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS--------DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc--------CCCchhHHHHHHHHHHccc
Confidence 3457777777777777777764 3444444444444444433
No 387
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.24 E-value=59 Score=25.48 Aligned_cols=81 Identities=11% Similarity=0.155 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHEMEEKG-----IDCDKYTFSILLSACAAASD-GEGIDKIVAMMEADRGVVLDWTVYAT 263 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
.|.++.-....+.+...+.+++.+.... -..+...|.+++.+.++..- .-.+..+|+.++ +.+.+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk-~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK-KNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH-HcCCCCCHHHHHH
Confidence 3444444445555555555555542210 01244567777777655554 345566777777 5666777777777
Q ss_pred HHHHHHhc
Q 011472 264 AASGYVKA 271 (485)
Q Consensus 264 l~~~~~~~ 271 (485)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766554
No 388
>PRK10941 hypothetical protein; Provisional
Probab=67.15 E-value=82 Score=27.87 Aligned_cols=58 Identities=14% Similarity=-0.111 Sum_probs=28.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
+-.+|.+.++++.|.++.+.+. ...+ .++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll-~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALL-QFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344555555555555555555 3222 23333333444455555555555555555544
No 389
>PRK10941 hypothetical protein; Provisional
Probab=65.67 E-value=63 Score=28.58 Aligned_cols=56 Identities=11% Similarity=-0.082 Sum_probs=34.8
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 181 (485)
-.++.+.++++.|.++.+.+....|+ +.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556667777777777766666554 334445555566777777776666666544
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.55 E-value=1.1e+02 Score=27.99 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=18.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Q 011472 370 IDAYCRRGLLHKAETLIYKAQLRGT 394 (485)
Q Consensus 370 ~~~~~~~g~~~~a~~~~~~m~~~~~ 394 (485)
.....++|..+.|..+++.+.+.++
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3344568888999999988887664
No 391
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=1.7e+02 Score=29.85 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=53.8
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESA 347 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 347 (485)
+..-|+-++|..+.++|.....+.-...-..++..+|+-.|+.....+++.-..+....|+.-+..+.-++.-..+.+..
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc
Confidence 33444555555555555543111111112233444555555555555555443344444444444444445555555555
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 011472 348 EKIFEEWESRNLCHDIRIPNHLIDAYCRRGL-LHKAETLIYKAQL 391 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 391 (485)
..+.+-+.+. ..|.+..-.++.-+.+-.|. ..+|..+++-|..
T Consensus 591 ~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 591 PSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred hHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 5555444332 33333333333222222221 3455555555554
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.09 E-value=23 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHhcCCHhHHHHHHHHHhcCCC-CCHHHHHHHH
Q 011472 447 YYKKERDIEGADYFIKLLTGKEI-ISADLQDRLL 479 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~ 479 (485)
...+.|-.+++..++++|.+.|. .++..|..++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34567777788888888888886 7777777665
No 393
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.63 E-value=1.2e+02 Score=27.55 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=28.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
|.-+..+.|+..+|.+.|+.+.++..+..-......++.++....-+.++..++.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455677777777776665222110001122345556555555555555554443
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.43 E-value=1.4e+02 Score=28.41 Aligned_cols=213 Identities=9% Similarity=-0.082 Sum_probs=95.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcch--HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc--hHHHHHHHHHhcCC
Q 011472 162 YACAKSAEKAEIIMQQMRDRGLVKKTID--YNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY--TFSILLSACAAASD 237 (485)
Q Consensus 162 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~ 237 (485)
.++.|+.+-+..+ .+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455666554444 45676665433 233444555666654 444555566655432 12234455567788
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccC--CcchhHHHHHHHHHhcCCHHHHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN--KFSRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
.+.+..+++.-. ...-..+..-. +.+...+..|+.+-+..+++ .|..+ ++..- .+.+...+..|+.+-+..
T Consensus 81 ~~~v~~Ll~~~~-~~~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g-~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 81 VKAVEELLDLGK-FADDVFYKDGM-TPLHLATILKKLDIMKLLIA----RGADPDIPNTDK-FSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHHHcCC-cccccccCCCC-CHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCC-CCHHHHHHHcCCHHHHHH
Confidence 776666554322 11000111111 23333445566654444333 23211 11111 233444556677666555
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 316 VWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRI---PNHLIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
+++.-..-...+..-.+.+. ..+..|+.+ +.+.+.+.|..++... ....+...+..|+.+ +.+.+.+.
T Consensus 154 Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred HHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 55421111112222233333 333445544 3344455566555432 123444344556543 44445556
Q ss_pred CCCCcH
Q 011472 393 GTEPNV 398 (485)
Q Consensus 393 ~~~p~~ 398 (485)
|..|+.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 665553
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.38 E-value=35 Score=24.33 Aligned_cols=20 Identities=10% Similarity=-0.104 Sum_probs=9.7
Q ss_pred HHHhcCCHhHHHHHHHHHhc
Q 011472 447 YYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~ 466 (485)
.....|++++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555554443
No 396
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=63.34 E-value=1.1e+02 Score=27.33 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=8.8
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 011472 324 LKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 324 ~~~~~~~~~~li~~~~~~~ 342 (485)
.||+..+-......+...|
T Consensus 219 fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred cCCcchhHHHHHHHHhHhh
Confidence 3555555444444444333
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.12 E-value=28 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=11.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.+|.++...|++++|.++.+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 398
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.31 E-value=55 Score=33.81 Aligned_cols=132 Identities=20% Similarity=0.165 Sum_probs=80.4
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
.++...|+++.|.+.-.++- +..+|..|.......|+.+-|.-.|++.+. |+.|--.|.-.|+.++-
T Consensus 651 ~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 45567778887777655443 577888888888888888888888877654 23333345566777776
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.++..-...+ -|..+ ....-.-.|+.++-.+++...- ..| ..|. .-...|.-++|.++.++...
T Consensus 718 ~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~g----~~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENGG----QLP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhcC----ccc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6655554332 12211 1111223578887777776543 211 1221 11345778889999888877
Q ss_pred h
Q 011472 287 L 287 (485)
Q Consensus 287 ~ 287 (485)
.
T Consensus 782 ~ 782 (1202)
T KOG0292|consen 782 Q 782 (1202)
T ss_pred c
Confidence 4
No 399
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.07 E-value=90 Score=25.79 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHh---------hccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011472 404 MATGYLQNNQSEKGVEAMKKALVL---------LEAGTRWKPSKECLAACLGYYKKERDIEGADYFIK 462 (485)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (485)
++-.|-+..++.++.++++.+.+. +.+..+..+.-...+.....|.+.|..+.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555566666666555543 11223344455566777778889999999988887
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.02 E-value=20 Score=23.21 Aligned_cols=17 Identities=12% Similarity=0.005 Sum_probs=6.2
Q ss_pred HHHHhcCCHHHHHHHHH
Q 011472 160 NAYACAKSAEKAEIIMQ 176 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~ 176 (485)
.+|...|++++|.+..+
T Consensus 31 ~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 33333333333333333
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.83 E-value=15 Score=32.55 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCcch-HHHHHHHHHHcCChhhHHHHHHHHHHcCCC
Q 011472 185 KKTID-YNSMMNVYYQTGNYKKLDSLMHEMEEKGID 219 (485)
Q Consensus 185 p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 219 (485)
||..+ |+..|....+.||+++|++++++.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34443 446666666667777777777776666655
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.71 E-value=1.5e+02 Score=27.84 Aligned_cols=25 Identities=4% Similarity=-0.117 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
+.-+..-|...|+++.|++.|.+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhh
Confidence 3344444555555555555555543
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.05 E-value=14 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=18.1
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 011472 200 TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 231 (485)
.|.-..|..+|..|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3455666667777777766666 35555543
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.89 E-value=58 Score=22.85 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHH
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAA 139 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 139 (485)
+..+++.+.+.|+ .+......+-.+-...|+.+.|.++++.+. +| |..|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg-----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK-----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC-----CcHHHHHHHHHHHcCchhhhh
Confidence 5668888888884 455555555554456799999999999998 54 677888888888877766554
No 405
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.85 E-value=1.7e+02 Score=28.25 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=68.3
Q ss_pred HHhcCCHHHHHHHHHHHH---hcCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCc-----
Q 011472 338 LLKFDGMESAEKIFEEWE---SRNLCHD-----IRIPNHLIDAYCRRGLLHKAETLIYKAQL-------RGTEPN----- 397 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~p~----- 397 (485)
+.-.|++..|.+++...- ..|...+ -..||.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345677877777765432 1121111 12245565556667777777777766653 455553
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh
Q 011472 398 ------VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK 450 (485)
Q Consensus 398 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 450 (485)
..+||. .-.|...|++-.|.+.|.+... -+.-++..|..+..+|.-
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~------vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH------VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHH
Confidence 223433 2357788999999999999997 677888999999988874
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.38 E-value=68 Score=23.54 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHH
Q 011472 378 LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGA 457 (485)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 457 (485)
..++|..+.+-+...+.. ....--+-+..+.+.|++++| +.... ..-.||...|..|- -.+.|--+++
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~------~~~~pdL~p~~AL~--a~klGL~~~~ 88 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQ------CHCYPDLEPWAALC--AWKLGLASAL 88 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHT------TS--GGGHHHHHHH--HHHCT-HHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcc------cCCCccHHHHHHHH--HHhhccHHHH
Confidence 467777777777765431 222223334457788888888 22221 24467777665554 4577888888
Q ss_pred HHHHHHHhcCCCCCHHHH
Q 011472 458 DYFIKLLTGKEIISADLQ 475 (485)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (485)
...+.++-..|-|....|
T Consensus 89 e~~l~rla~~g~~~~q~F 106 (116)
T PF09477_consen 89 ESRLTRLASSGSPELQAF 106 (116)
T ss_dssp HHHHHHHCT-SSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 888887777665544433
No 407
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.92 E-value=65 Score=23.16 Aligned_cols=56 Identities=16% Similarity=0.021 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHH
Q 011472 102 ALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIAL 158 (485)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 158 (485)
..+-++++...+ .+..|-....+.-.|++.|+-+.|.+-|+.=....|...+|-.+
T Consensus 56 le~~~ek~~ak~-~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 56 LEKYLEKIGAKN-GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHHhhcC-CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 344455555554 44556666666677777777777777777766666666555433
No 408
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=58.89 E-value=43 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
++++.+.++...++|+++++.|.++|- +++.....+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE--It~e~A~eL 101 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE--ITPEEAKEL 101 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 356777888999999999999999983 566555544
No 409
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.74 E-value=1.4e+02 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhcCChH
Q 011472 224 TFSILLSACAAASDGE 239 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~ 239 (485)
+|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4666666666666654
No 410
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.73 E-value=1.4e+02 Score=27.00 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=65.1
Q ss_pred HcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhcCChHH
Q 011472 199 QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVY--ATAASGYVKAGLSDK 276 (485)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~ 276 (485)
...-+.+|.++|++.++.| ..+|+.- ..+...| ...+.+. +.+ .++.+| .-+..+-.+.|+..+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~------~~~da~~-rRD--tnvl~YIKRRLAMCARklGrlrE 293 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQS------PQHEAQL-RRD--TNVLVYIKRRLAMCARKLGRLRE 293 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhc------cchhhhh-hcc--cchhhHHHHHHHHHHHHhhhHHH
Confidence 3345678888888887653 2233311 1111112 1223333 333 344444 557777778999999
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 011472 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY 327 (485)
Q Consensus 277 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (485)
|.+.|+++.+..+...-......|+.++....-+.++..++....+-..|.
T Consensus 294 A~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPk 344 (556)
T KOG3807|consen 294 AVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPK 344 (556)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcc
Confidence 999999988763222222334567777777776666666666544333343
No 411
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=58.53 E-value=1.3e+02 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHH
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRL 126 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
...+++.+.+.+....|+++.+.+.... .-+.....++
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~---~F~~~LE~LL 122 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLP---YFSHALELLL 122 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCC---CcHHHHHHHH
Confidence 5677777778888888888877776533 3344444443
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.38 E-value=1.7e+02 Score=27.64 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=38.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHH--cCChhhHHHHHHHHHHc
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLVKKTI--DYNSMMNVYYQ--TGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~--~~~~~~a~~~~~~m~~~ 216 (485)
.+.+.+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345788999999999998887 555544 45555566553 34577888888887664
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.57 E-value=53 Score=28.64 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=11.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
+...+..++.+.|+.+....+--+
T Consensus 220 ~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 220 VLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455555555555555444333
No 414
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.50 E-value=66 Score=22.76 Aligned_cols=57 Identities=18% Similarity=0.056 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
-|...--.+...+...|++++|++.+-++........+...-..|+..+.-.|.-+.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 344555556666777777777777776666653333334555666666555555433
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.33 E-value=76 Score=23.42 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344444455555555555555544443
No 416
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.05 E-value=34 Score=23.32 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
+++-+.++...++|+++++-+.++|-++++.-+.|-
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~ 72 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALR 72 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344566777788888888888888877776555443
No 417
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.96 E-value=1.5e+02 Score=28.93 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHH
Q 011472 165 AKSAEKAEIIMQQMR 179 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~ 179 (485)
.|+...|+.++++..
T Consensus 213 ~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 213 DGSVRDMLSFMEQAI 227 (484)
T ss_pred CChHHHHHHHHHHHH
Confidence 466666666666654
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.33 E-value=2e+02 Score=27.92 Aligned_cols=101 Identities=11% Similarity=-0.083 Sum_probs=75.4
Q ss_pred CCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhhccCCCCc
Q 011472 359 LCHDIRIP-NHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGY--LQNNQSEKGVEAMKKALVLLEAGTRWK 435 (485)
Q Consensus 359 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~ 435 (485)
..|+..++ +.+++-+.+.|-..+|..++..+... .+|+...|..+|..- ....+...+.++|+.|... .|
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~----fg-- 527 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE----FG-- 527 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH----hC--
Confidence 34455554 67888888899999999999999886 456777787777642 2233477889999999974 44
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 436 PSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 436 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.|+..|.-.+.--...|..+.+-.++.+..+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 7778888887777788998888887776654
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.90 E-value=44 Score=20.24 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011472 374 CRRGLLHKAETLIYKAQLRGTEPNVRTWYLMA 405 (485)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (485)
.+.|-++++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555666666666666666655555555444
No 420
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.80 E-value=2.5e+02 Score=28.83 Aligned_cols=123 Identities=17% Similarity=0.085 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNLCHDIR--IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 412 (485)
.-++.--|+.++|..+.+++.... .|-.. -.-++..+|+-.|+-....+++.-.... +.-|+.-+..+.-+|.-..
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 334556677788888888887542 22111 1234556777788877777777655543 3335566666666777778
Q ss_pred CHHHHHHHHHHHHHhhccCCCCccCHHH--HHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 413 QSEKGVEAMKKALVLLEAGTRWKPSKEC--LAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
+++....+..-+.+ ...|.... -..|..+|+-.|+ .+|+.+++.|.+
T Consensus 586 dp~~~~s~V~lLse------s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSE------SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhh------hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 88888888777665 56665543 3344455666665 678888888876
No 421
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.16 E-value=24 Score=23.09 Aligned_cols=49 Identities=6% Similarity=-0.069 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh
Q 011472 396 PNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK 450 (485)
Q Consensus 396 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 450 (485)
|....++.++..+++..-.++++..+.++.+. |. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~-----g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQR-----GS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555552 32 344444444444443
No 422
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.05 E-value=1.4e+02 Score=25.74 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA 234 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 234 (485)
...-+..|.+.-++.-|....++..+. ..+-.++++ |.+..+.+--.++.+-....++.-+.....+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 334455666666666666666555441 222222332 444444444444444445555555555554443 456
Q ss_pred cCChHHHHHHHHHHHhcCCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 011472 235 ASDGEGIDKIVAMMEADRGV-----------VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLM 288 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 288 (485)
.||...|...++.-....|. .|.+.....++.. +..+++++|.+++.++-+.|
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLG 268 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcC
Confidence 77877777777665533332 2333333333332 33455666666666655554
No 423
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.38 E-value=1.4e+02 Score=25.67 Aligned_cols=58 Identities=12% Similarity=-0.050 Sum_probs=37.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHH---HHH-HHHh--cCCHhHHHHHHHHHhcCCC
Q 011472 407 GYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAA---CLG-YYKK--ERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 407 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---l~~-~~~~--~g~~~~a~~~~~~~~~~~~ 469 (485)
.-...+++.+|+.+|++.... .+..+..-|.. ++. ++|+ ..|.-.+...+++..+..|
T Consensus 163 yaa~leqY~~Ai~iyeqva~~-----s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARS-----SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 345678899999999998874 44444333332 222 2232 3677777888888888777
No 424
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.26 E-value=82 Score=22.85 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=31.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
..+.+.|++++|..+.+.. ..||...|..|- -.+.|..+.+..-+.++...|-|....
T Consensus 47 sSLmNrG~Yq~Al~l~~~~---------~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg~p~lq~ 104 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL---------CYPDLEPWLALC--EWRLGLGSALESRLNRLAASGDPRLQT 104 (115)
T ss_pred HHHHccchHHHHHHhcCCC---------CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCCCHHHHH
Confidence 3455666666666655432 245655555443 335566665555555555555544333
No 425
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.14 E-value=1.3e+02 Score=25.14 Aligned_cols=62 Identities=6% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhh
Q 011472 83 MEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 83 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
....+.++..+.-.|+++.|-++|.-+.+...+.+. ..+..-+..+.+.+.-....++++.+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHH
Confidence 356788899999999999999999999987633322 12223344444444443333444433
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.52 E-value=17 Score=32.74 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=42.4
Q ss_pred cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 011472 271 AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKI 350 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 350 (485)
.|.++.|++.|...... .++....|..-.+++.+.+++..|++-+.......+....-|-.-..+-.-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 44455555555555444 3333344444445555555555555554433333333333343344444445556666665
Q ss_pred HHHHHhcCCC
Q 011472 351 FEEWESRNLC 360 (485)
Q Consensus 351 ~~~~~~~~~~ 360 (485)
+....+.+..
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555555443
No 427
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=53.35 E-value=1.2e+02 Score=24.66 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=41.4
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh
Q 011472 52 KLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK 131 (485)
Q Consensus 52 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (485)
.|-..|.+.+-.+.-+.+|+..+.+.|+.-|..--...+..-.+.| ..-..+...+.+.| +++.+....+.....
T Consensus 39 ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkG---i~~~~Ie~aL~~~~~ 113 (174)
T COG2137 39 ELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKG---IDDEIIEEALELIDE 113 (174)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcC---CCHHHHHHHHhccch
Confidence 3444455555444445555555555555555555555555444444 22333444444544 344444444443443
Q ss_pred hCCHHHHHHHHH
Q 011472 132 VQGIEQAASYFN 143 (485)
Q Consensus 132 ~~~~~~A~~~~~ 143 (485)
....+.|...+.
T Consensus 114 ~~~~~~a~~~~~ 125 (174)
T COG2137 114 EDEQERARKVLR 125 (174)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.09 E-value=2.2e+02 Score=27.52 Aligned_cols=107 Identities=20% Similarity=0.003 Sum_probs=72.8
Q ss_pred HHHcCCHHHHHHHHHHHH---HcCC--CCc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHh----hccCCCCccCH--
Q 011472 373 YCRRGLLHKAETLIYKAQ---LRGT--EPN---VRTWYLMATGYLQNNQSEKGVEAMKKALVL----LEAGTRWKPSK-- 438 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~---~~~~--~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~p~~-- 438 (485)
+.-.|++.+|.+++...- +.|. .|. -..||.|...+.+.|.+.-+..+|.++++. +. .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~--~g~~~~~~~ 327 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR--NGLKPAKTF 327 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh--ccCCCCcce
Confidence 445789999998876542 2221 121 223566766677788888888888888741 11 2455532
Q ss_pred ---------HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHH
Q 011472 439 ---------ECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNI 482 (485)
Q Consensus 439 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~ 482 (485)
.+|+ ..-.+...|+.-.|.+.|.+..+....+|..|-.|. +++
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2233 334678999999999999999988888999998888 654
No 429
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.69 E-value=50 Score=22.55 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHH
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIR 125 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 125 (485)
++++.+.++.-.++|+++++.+.++|. +++.....+
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE--i~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE--ITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 356777788888999999999999983 566544443
No 430
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=52.08 E-value=41 Score=31.96 Aligned_cols=84 Identities=17% Similarity=0.025 Sum_probs=40.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcC
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVY-ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
+.+.+.++++.|..++.++. ...|+-..| ..-..++.+.+++..|+.-+..+.+. .+.....|..=..++.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 34445556666666666666 333433333 22235566666666666655555554 2222233333334444444
Q ss_pred CHHHHHHHHH
Q 011472 309 NKDDVLRVWK 318 (485)
Q Consensus 309 ~~~~a~~~~~ 318 (485)
.+.+|+..|+
T Consensus 87 ~~~~A~~~l~ 96 (476)
T KOG0376|consen 87 EFKKALLDLE 96 (476)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.39 E-value=46 Score=31.64 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=48.8
Q ss_pred HHhhCCHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHH
Q 011472 129 IAKVQGIEQAASYFNCVPEKLKLPSVYI-ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLD 207 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 207 (485)
+.+.+.++.|..++.++++..|+...|- .-..++.+.+++..|+.=+.+.++..+. -...|..-..++.+.+++.+|+
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHH
Confidence 3344556666666666666555543332 2235556666666666655555554311 1122222223333444455555
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 208 SLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
..|+.... +.|+..-....+.-|
T Consensus 93 ~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 93 LDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55555443 455555555444433
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.38 E-value=1.8e+02 Score=25.96 Aligned_cols=151 Identities=16% Similarity=0.110 Sum_probs=75.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH----hhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh----cC
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIA----KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC----AK 166 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 166 (485)
..+.+..+...+......+ ++.....+...+. ...+...|..+|....+.+ .......|...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCCccc
Confidence 3455666666666666543 2223333333332 3445777777777555543 22333335555544 33
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC-------ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----c
Q 011472 167 SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG-------NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA----A 235 (485)
Q Consensus 167 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 235 (485)
+..+|...|++..+.|..+-..+...+...|..-. +...|...|.+.-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777778877777765432222333444333321 1235666666665554 22222233333322 2
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 011472 236 SDGEGIDKIVAMMEADRGV 254 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~ 254 (485)
.+.++|...|.... +.|.
T Consensus 205 ~d~~~A~~wy~~Aa-~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAA-EQGD 222 (292)
T ss_pred cCHHHHHHHHHHHH-HCCC
Confidence 35566666666665 4443
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.35 E-value=21 Score=27.35 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011472 61 GDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKK 92 (485)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 92 (485)
|.-.+ +..||..|.++|.+||. |+.|+..
T Consensus 109 gsk~D-aY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTD-AYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCc-HHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33344 77799999999999875 6666654
No 434
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.72 E-value=2.6e+02 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhh
Q 011472 100 SHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVP 146 (485)
Q Consensus 100 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 146 (485)
++....+..+.+..++..++.....++... .|+...|..+++++.
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~i 225 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHH
Confidence 333444444443333556666655554432 477777777766543
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.07 E-value=2.4e+02 Score=26.98 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=23.4
Q ss_pred HHHHHHHHHH---cCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 011472 190 YNSMMNVYYQ---TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231 (485)
Q Consensus 190 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 231 (485)
+..++.++.+ .++++.|+.++..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444443 36677777777777777666654443333333
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.89 E-value=13 Score=33.54 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=46.8
Q ss_pred hhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHH
Q 011472 131 KVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSL 209 (485)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 209 (485)
..|.+++|.+.|...++.+|. ...|..-..++.+.+++..|++=++...+.+.. +..-|-.--.+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 455566666666666555543 333444455566666666666655555544322 222333333333445666666666
Q ss_pred HHHHHHcCCCCC
Q 011472 210 MHEMEEKGIDCD 221 (485)
Q Consensus 210 ~~~m~~~g~~p~ 221 (485)
|....+.+..+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666655555443
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.55 E-value=2.1e+02 Score=26.18 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhc-----CCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEK-----LKLPSVYI--ALLNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~ 180 (485)
+...-+.++.++|.++++++... .|+...|. ...+.+...|+..++.+++++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33334455666666666655443 14433332 233445555666666666655554
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.87 E-value=41 Score=29.92 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 395 (485)
|+.-|..-.+.|++++|++++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 556677777777777777777777777655
No 439
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.78 E-value=3.8e+02 Score=28.98 Aligned_cols=135 Identities=10% Similarity=0.156 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcC-CCCCChhHHHHHHHHHHh-hCCHHHHHHHHHhhhhcCCChHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMT-KKS-NFVLTPADVAIRLDLIAK-VQGIEQAASYFNCVPEKLKLPSVYI 156 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 156 (485)
.|.+-.+. .++.+...++|.+|+.+.++=. ..+ .+..+|..+..-+..+.+ .++.+.---++..+.+.+-+...|.
T Consensus 692 ~PR~LVL~-~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~ 770 (928)
T PF04762_consen 692 YPRALVLA-GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYK 770 (928)
T ss_pred ccHhHHHH-HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccc
Confidence 34444444 3455677888988876654322 111 123456666665555543 3444444444444443322222222
Q ss_pred HHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC--ChhhHHHHHHHHHHc
Q 011472 157 ALL------------NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG--NYKKLDSLMHEMEEK 216 (485)
Q Consensus 157 ~ll------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~ 216 (485)
... ......++++...+.+.+..+.... ...-...++.+|++.+ ++++|+.+..++.+.
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 771 DTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccCCCccccHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 211 1111223344444444333321111 2223445666666666 666666666666654
No 440
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.74 E-value=58 Score=24.01 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
+++-+.++...++|+++++-|.+.|-+++..-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344567888888899999998888887777655554
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.59 E-value=2.4e+02 Score=26.59 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=30.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcc--cHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNR--GYICVISSLL--KFDGMESAEKIFEEWESR 357 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 357 (485)
..+.+.+++..|.++++.+....+++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445777777777777755444444333 2233333332 344566777777766543
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.08 E-value=1.6e+02 Score=24.43 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhh-ccCCcchhHHHHHH-HHHhcC--CHHHHHHHHHHHhhcCCCCc
Q 011472 267 GYVKAGLSDKALAVLRKSEVLM-MHNKFSRAYDFVIT-QYAACG--NKDDVLRVWKRYKQNLKVYN 328 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~--~~~~a~~~~~~~~~~~~~~~ 328 (485)
.....|++++|..-++++.+.- ....-...|..+.. +++..+ .+-+|..++..+..+..|++
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~ 103 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSP 103 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCH
Confidence 3445677777777777665541 11111233444443 445444 34556666666655555544
No 443
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.08 E-value=1.3e+02 Score=23.56 Aligned_cols=100 Identities=11% Similarity=0.180 Sum_probs=63.2
Q ss_pred HHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC
Q 011472 72 DQWVEEGRPLDMEQ--LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL 149 (485)
Q Consensus 72 ~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 149 (485)
..|.+.+..++..+ .+.++......+.+...+.+++.+..- .+..+. ..
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l-----~~~~~~------------------------~~ 76 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL-----NTDNII------------------------GW 76 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh-----hHHHHh------------------------hh
Confidence 33444455555433 466666666666777666666666221 111111 01
Q ss_pred CChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc
Q 011472 150 KLPSVYIALLNAYACAKS-AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200 (485)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 200 (485)
.+...|..++.+.++... ---+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 356778888888876665 455677888888877888888898888887654
No 444
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=47.95 E-value=1.2e+02 Score=22.84 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHH
Q 011472 61 GDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRL 126 (485)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
|-+.+.+..+++.+.+.|+.-|..-....+....+.+.+ ....+-..+.+.| +++......+
T Consensus 5 g~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kG---i~~~~i~~~l 66 (121)
T PF02631_consen 5 GFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKG---IDREIIEEAL 66 (121)
T ss_dssp T--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHC---CChHHHHHHH
Confidence 344455778888888888887777777777777763332 2345666677777 4555444433
No 445
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.92 E-value=52 Score=28.01 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 410 QNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 410 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+.++.+.|.+++.++++ -.+-....|..+.....+.|+++.|.+.+++..+.+|
T Consensus 7 ~~~D~~aaaely~qal~------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALE------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhh------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34455555555555543 1122334444444444555555555555555544443
No 446
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.82 E-value=2.6e+02 Score=26.73 Aligned_cols=62 Identities=10% Similarity=-0.012 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
...|+.-|...|+..+|.+..+++-- .+......+.+++.+.-+.|+-...+.+++..-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm------PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM------PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC------CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34566667777777777777666531 222344566666666666666555555555544444
No 447
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.11 E-value=57 Score=32.68 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 119 PADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMR 179 (485)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 179 (485)
.+...-++..|.+.|-.+.|.++.+.+-...-...-|..-+..+.++|+......+-+.+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555677777777777777766554432222335555555666666655555544444
No 448
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.01 E-value=44 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhhcCCChHHH
Q 011472 135 IEQAASYFNCVPEKLKLPSVY 155 (485)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~~ 155 (485)
++.|..+|++.....|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 344444444444333444333
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.87 E-value=2.3e+02 Score=25.83 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH-H----hhcCCCCcccHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCc----c
Q 011472 295 RAYDFVITQYAACGNKDDVLRVWKR-Y----KQNLKVYNRGYICVISS-LLKFDGMESAEKIFEEWESRNLCHDI----R 364 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~-~----~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 364 (485)
..+.....-||+.|+-+.|++.++. . .-|.+.|+..+..-+.. |....-+.+-.+..+.+.+.|...+- .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 5667777888888888888888873 2 23455555444332222 22222234444445555555654442 3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
+|..+- +....++.+|-.+|-+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 444332 233457778887776654
No 450
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.66 E-value=3.5e+02 Score=27.91 Aligned_cols=25 Identities=8% Similarity=-0.168 Sum_probs=18.4
Q ss_pred HHHhcCCHhHHHHHHHHHhcCCCCC
Q 011472 447 YYKKERDIEGADYFIKLLTGKEIIS 471 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~~~~~~ 471 (485)
+-.-+.++.+|.+.-+.|.+..+|.
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCce
Confidence 3445678888888888888887653
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.49 E-value=1.4e+02 Score=23.21 Aligned_cols=72 Identities=6% Similarity=-0.100 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC
Q 011472 80 PLDMEQLRIIIKKFRLYKRFS---HALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL 151 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 151 (485)
.++..+-..+.-++.+..+.+ +.+.+++.+.+.....-..+-..++.-.+.+.++++.++++.+.+.+..||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 566777777777777766544 566778887763311112233444456677888888888887777766554
No 452
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.30 E-value=2.1e+02 Score=25.24 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHH
Q 011472 255 VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICV 334 (485)
Q Consensus 255 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 334 (485)
.-++.....+...|.+.|++.+|...|-.- ..++...+..++......|...++ +.. ..-.
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~-------------dlf-i~Ra 147 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEA-------------DLF-IARA 147 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--H-------------HHH-HHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcch-------------hHH-HHHH
Confidence 346667777888888888888887766442 111112222233333333333222 111 1122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 011472 335 ISSLLKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~ 357 (485)
+--|.-.++...|...++...+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33345567777777777666644
No 453
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.01 E-value=72 Score=19.87 Aligned_cols=25 Identities=20% Similarity=0.001 Sum_probs=12.5
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCC
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKL 151 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~ 151 (485)
-++.+.|++++|.+..+.+.+..|+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3444555555555555555555444
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.57 E-value=2.1e+02 Score=25.17 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHh
Q 011472 70 LLDQWVEEGRPLDMEQLRIIIKKFRLYKRF-----SHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNC 144 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 144 (485)
+++-+.+.+.+++......++..+...+.- +-.....+|-...+...-+|.....+...+.+.|++.+|+..|-.
T Consensus 36 liev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 36 LIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 445555677778877777777776655432 223344444422222223577778888888999999888877654
Q ss_pred hhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 145 VPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 145 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
-.. ++...+..++..+...|...++ |...-..++ -|...++...|...++...+.
T Consensus 116 ~~~--~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 116 GTD--PSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp S-H--HHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cCC--hhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 332 2333332344433333433333 111112222 255667788888877776654
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.01 E-value=1.5e+02 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=11.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHcC
Q 011472 193 MMNVYYQTGNYKKLDSLMHEMEEKG 217 (485)
Q Consensus 193 l~~~~~~~~~~~~a~~~~~~m~~~g 217 (485)
++..+.+.++.-.|.++|+.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3334444444444444444444443
No 456
>PRK12798 chemotaxis protein; Reviewed
Probab=44.88 E-value=2.8e+02 Score=26.29 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-HcCChhhHHHHHHHHH
Q 011472 166 KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYY-QTGNYKKLDSLMHEME 214 (485)
Q Consensus 166 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~ 214 (485)
|+.+++.+.+..+.....++....|-.|+.+-. ...++.+|+++|+...
T Consensus 126 Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 126 GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 555555555555444444444444444444332 2334455555555543
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.78 E-value=1.6e+02 Score=26.53 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----------hcCChHH
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYV----------KAGLSDK 276 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 276 (485)
.++++.|...++.|.-.+|.-+.-.+.+.=.+..++.+++.+..+ ... |..|+..|| -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888889998888877777777777888899999988832 222 334444443 3588888
Q ss_pred HHHHHHH
Q 011472 277 ALAVLRK 283 (485)
Q Consensus 277 A~~~~~~ 283 (485)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 8888887
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.23 E-value=2.2e+02 Score=25.60 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
.++..+.+.++..+..+.+..+.. ...-...+..+...|++..|++++.+..+. .. +-..|+.+=..-.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHhHHHH
Confidence 344555555555555555555432 222334555566677777777777666543 11 1111111111111111
Q ss_pred ChH-----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011472 237 DGE-----GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 237 ~~~-----~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 281 (485)
+.. .....|..+. ..-|+..|..+..+|.-.|+...+.+-+
T Consensus 175 e~~~~i~~~ld~~l~~~~----~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVC----QDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 110 1112233332 1367778888888888888766655333
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.71 E-value=2.9e+02 Score=26.09 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc---------CCCCC
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDR--GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK---------GIDCD 221 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~p~ 221 (485)
..+.-+.+.|..+|+++.|++.|.+.... ..+..+..|-.+|....-.|+|.....+..+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45777888899999999999999885543 11123455666777777788888777777666553 12333
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 222 KYTFSILLSACAAASDGEGIDKIVAMM 248 (485)
Q Consensus 222 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 248 (485)
...+..+...+.+ ++..|.+.|-..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 3344444443333 566665555433
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.47 E-value=3.9e+02 Score=27.58 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=99.0
Q ss_pred HHHHHhhhhcC--CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc----------hHHHHHHHHHHcCCh
Q 011472 139 ASYFNCVPEKL--KL---PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI----------DYNSMMNVYYQTGNY 203 (485)
Q Consensus 139 ~~~~~~~~~~~--~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~ 203 (485)
..++++|..+- |+ ..+...++-.|....+++..+++.+.++.. ||.. .|...++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 34556665552 43 345666777788888888888888888775 4321 122223222344677
Q ss_pred hhHHHHHHHHHHc--CCCCCcchHHHH-------HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 011472 204 KKLDSLMHEMEEK--GIDCDKYTFSIL-------LSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL- 273 (485)
Q Consensus 204 ~~a~~~~~~m~~~--g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 273 (485)
++|+...-.+.+. .+.||..+..-- -+.|...+..+.|.+.|++.- .+.|+...=-.+...+...|.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 7888777777654 366776543211 122344556677778887766 444544332222222222232
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
++...++ ...| .. |-+.+.+.|..+...++|+- .....+-.-.+++.+|.+.-+.
T Consensus 337 Fens~El----q~Ig------mk---Ln~LlgrKG~leklq~YWdV------------~~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 337 FENSLEL----QQIG------MK---LNSLLGRKGALEKLQEYWDV------------ATYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred ccchHHH----HHHH------HH---HHHHhhccchHHHHHHHHhH------------HHhhhhhhhccCHHHHHHHHHH
Confidence 2222211 1111 22 22344677777777777761 1122233345666666666666
Q ss_pred HHhc
Q 011472 354 WESR 357 (485)
Q Consensus 354 ~~~~ 357 (485)
|.+.
T Consensus 392 mfKL 395 (1226)
T KOG4279|consen 392 MFKL 395 (1226)
T ss_pred Hhcc
Confidence 6554
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.39 E-value=94 Score=20.41 Aligned_cols=52 Identities=2% Similarity=-0.079 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 011472 79 RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKV 132 (485)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (485)
+.|....++.++...++..-.++++..+....+.|. ++.+.|.-.++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 346677889999999999999999999999999885 5666666666666654
No 462
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.21 E-value=3.3e+02 Score=26.64 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhh
Q 011472 103 LQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVP 146 (485)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 146 (485)
.+.++.+.+..++..++.....++ -...|+...|..+++++.
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHH
Confidence 344444433322445555554443 234577777777777654
No 463
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.12 E-value=2.2e+02 Score=24.50 Aligned_cols=79 Identities=10% Similarity=0.001 Sum_probs=38.1
Q ss_pred hhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHH
Q 011472 131 KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLM 210 (485)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (485)
..+++++|.+.+-.-.. .......++.++...|+.+.|+.++....-... +...-..++.. ..++.+.+|..+-
T Consensus 90 D~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 45666666666633211 011122355666666777777777655332111 11112222222 4556667776665
Q ss_pred HHHHH
Q 011472 211 HEMEE 215 (485)
Q Consensus 211 ~~m~~ 215 (485)
+...+
T Consensus 164 R~~~~ 168 (226)
T PF13934_consen 164 RSYPD 168 (226)
T ss_pred HhCch
Confidence 55544
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.01 E-value=2.6e+02 Score=25.20 Aligned_cols=70 Identities=6% Similarity=0.077 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHh----------cCCHH
Q 011472 242 DKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAA----------CGNKD 311 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~ 311 (485)
.++++.+. ..++.|.-.++.-+.-.+...=.+.+.+.+++.+.... .-|..|+..||. .|++.
T Consensus 263 ~EL~~~L~-~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~------~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 263 EELWRHLE-EKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP------QRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred HHHHHHHH-hcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh------hhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 46888888 88999998888877777888888999999999987652 225666665553 58888
Q ss_pred HHHHHHH
Q 011472 312 DVLRVWK 318 (485)
Q Consensus 312 ~a~~~~~ 318 (485)
..+++++
T Consensus 336 ~nmkLLQ 342 (370)
T KOG4567|consen 336 VNMKLLQ 342 (370)
T ss_pred HHHHHHh
Confidence 8888876
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.94 E-value=1.6e+02 Score=23.14 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 011472 211 HEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTV 260 (485)
Q Consensus 211 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 260 (485)
+.+.+.|++++.. -..++..+...++.-.|.++++.+. +.++..+..|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELR-EEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhH
Confidence 3444455554432 2234455555555555666666665 4444444433
No 466
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.62 E-value=3.8e+02 Score=26.96 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCC
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGI 218 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 218 (485)
...+..|+..+. .-+.+.-.++++++.. . + ...+..++++....|......-+.+.+....+
T Consensus 310 ~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 310 AAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 344555555443 3345555556655543 1 1 44566666666666665544444444444333
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.09 E-value=90 Score=23.14 Aligned_cols=47 Identities=4% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 011472 53 LYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFS 100 (485)
Q Consensus 53 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 100 (485)
++..+...+.+. .+.++++.+.+.+..++..|....|+.+.+.|-..
T Consensus 6 Il~~l~~~~~~~-sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHL-TAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCC-CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 444555443333 37777777777776777777777777777776544
No 468
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.75 E-value=2.6e+02 Score=25.14 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 011472 228 LLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
.+......|++.+|+++..+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455566666665555554
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.61 E-value=1.6e+02 Score=22.39 Aligned_cols=43 Identities=9% Similarity=0.051 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.+.++|..|...+.....+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666655444445556666666666666666666655
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.51 E-value=2.4e+02 Score=24.38 Aligned_cols=162 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh-hCCHHHHHHHHHhhhhcCCCh--HHHHHHHHHH
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK-VQGIEQAASYFNCVPEKLKLP--SVYIALLNAY 162 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~--~~~~~ll~~~ 162 (485)
+-.+++..-+.++++++.+.++.+...+ ..++....+.+..+|-. .|....+.+.+..+....... .....++.-|
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Q ss_pred Hh--cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh-----------------hhHHHHHHHHHHc---CCCC
Q 011472 163 AC--AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY-----------------KKLDSLMHEMEEK---GIDC 220 (485)
Q Consensus 163 ~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~m~~~---g~~p 220 (485)
.+ ...+..-..-+-.+....+-|...+-...+-.+-..|++ +.|.+.|++..+. .++|
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHH
Q 011472 221 DKYTFSILLSACAA-----ASDGEGIDKIVAMM 248 (485)
Q Consensus 221 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~ 248 (485)
...++-.++--|+- .|+.++|.++-+..
T Consensus 163 ~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 163 THPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 471
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.02 E-value=2.4e+02 Score=24.14 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=10.5
Q ss_pred HHHHHHcCChhhHHHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m 213 (485)
|+.....|++++|++...++
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445555555555555554
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.83 E-value=3.8e+02 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.++.-|.+.+++++|..++..|.-.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 3666677777777777777776543
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.73 E-value=1.7e+02 Score=22.31 Aligned_cols=45 Identities=9% Similarity=-0.032 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011472 380 HKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKA 424 (485)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 424 (485)
+.+..+|+.|...|+--. +..|......+...|++++|.++|+..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 377777777777665443 556666666777777777777777654
No 474
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.70 E-value=3.9e+02 Score=26.55 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=76.7
Q ss_pred cCChHHHHHHHHHHHHhhcc----------CCcchhHHHHHHHHHhcCCHHHHHHHHHH--------HhhcCCCCcc---
Q 011472 271 AGLSDKALAVLRKSEVLMMH----------NKFSRAYDFVITQYAACGNKDDVLRVWKR--------YKQNLKVYNR--- 329 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~--- 329 (485)
...+++|...|.-......+ |-.+.+.-.+...+...|+.+-+-.+..+ ....+.|...
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577777777776665211 11122344445566666666655555442 1222222211
Q ss_pred ----------cHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HcCCHHHHHHHHHHHHHcC--
Q 011472 330 ----------GYI---CVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC-RRGLLHKAETLIYKAQLRG-- 393 (485)
Q Consensus 330 ----------~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~-- 393 (485)
.|- .-+..+.+.|-+..|.++-+-+.+..+.-|+.....+|+.|+ ++.+++-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 111 223444556666777766666666555445566666666654 3555666666666554322
Q ss_pred -CCCcHHHHHHHHHHHhccCC---HHHHHHHHHHHHH
Q 011472 394 -TEPNVRTWYLMATGYLQNNQ---SEKGVEAMKKALV 426 (485)
Q Consensus 394 -~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~ 426 (485)
.-||-.--.++...|..... -+.|...+.++..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23333322333444444433 2344455555543
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.65 E-value=2.4e+02 Score=24.00 Aligned_cols=67 Identities=12% Similarity=0.028 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCC-------HHHHHHHHHHHHHhhccCCCC-ccCHHHHHH-HHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 401 WYLMATGYLQNNQ-------SEKGVEAMKKALVLLEAGTRW-KPSKECLAA-CLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 401 ~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~-~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+-.+.-.|-..|+ ...|.+.|.++.+. ...+. .-+..+... +.....+.|+.++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~--e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN--EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh--CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3334444555555 34566666666653 11111 123334333 34456789999999999999988764
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.41 E-value=2.2e+02 Score=23.63 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=11.8
Q ss_pred hcCChHHHHHHHHHHHHh
Q 011472 270 KAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~ 287 (485)
+.|+++.|.+.++-|...
T Consensus 133 ~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 133 RKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 456777777777766543
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.13 E-value=1.6e+02 Score=29.65 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHHcCChh------hHHHHHHHHHHcCCCCCcchHHHH
Q 011472 157 ALLNAYACAKSAEKAEIIMQQMRDR--GLVKKTIDYNSMMNVYYQTGNYK------KLDSLMHEMEEKGIDCDKYTFSIL 228 (485)
Q Consensus 157 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 228 (485)
+|+.+|...|++..+.++++.+... |-+-=...||.-++...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998765 32323456888889899999764 3344444333 55677888888
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 011472 229 LSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 229 l~~~~~~g~~~~a~~~~~~~~ 249 (485)
+.+-..--+-....-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333334444444
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.00 E-value=3.5e+02 Score=25.73 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRG------VVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
+...|++.++-.||+..|+++++.+.-..+ ......++--+.-+|...+++.+|.+.|.....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888888777641111 112345666778888888999999988887654
No 479
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.90 E-value=4.8e+02 Score=27.28 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHH---HhhCCHHHHHHHHHhhhhcCCChHHHHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLI---AKVQGIEQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
-+...+..||..+.+.|++++....-..|.+. .|++|..+...+.-. ...+...++..+|++.....-++..|.-
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~--~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e 188 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI--APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEE 188 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHH
Confidence 34556788899999999999877777777765 467777776664433 3457888888888888776555555555
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHHHh
Q 011472 158 LLNAYA-------CAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 158 ll~~~~-------~~~~~~~a~~~~~~m~~ 180 (485)
.+..+. ..++++....+|++...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHh
Confidence 554433 24567778888887654
No 480
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.80 E-value=3.9e+02 Score=26.18 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcch
Q 011472 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT 224 (485)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 224 (485)
..++.+ ...++++.|..++.+|...|..|....
T Consensus 248 ~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 248 RDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 334443 356778888888888877777665443
No 481
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.22 E-value=3.1e+02 Score=24.99 Aligned_cols=94 Identities=7% Similarity=0.007 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCcccHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHH
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWE----SRNLCHDIRIPNHLI-DAYCRRGLLHKAETLIYKAQLRGTEPN----VRTW 401 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~ 401 (485)
.......||+.||.+.|.+.+.... ..|.+.|+..+.+-+ -.|....-+.+-.+..+.+.+.|...+ ..+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 4456778999999999988776655 457777776664433 233334345556666666677775544 3444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 402 YLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..+- +....++.+|-.+|-+.+.
T Consensus 187 ~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 187 QGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHH--HHHHHhHHHHHHHHHHHcc
Confidence 4433 3345578889888888775
No 482
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.20 E-value=4.3e+02 Score=26.59 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=31.9
Q ss_pred hhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011472 131 KVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLV 184 (485)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 184 (485)
+.=+.+.-.++++++.. .+ ...+..++++....|.......+.+.+....+.
T Consensus 321 R~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 321 RTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred HhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34445555666666544 22 566777888888888766666666665554443
No 483
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.70 E-value=1.2e+02 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhcC-CChHHHHHHHHHHHh
Q 011472 135 IEQAASYFNCVPEKL-KLPSVYIALLNAYAC 164 (485)
Q Consensus 135 ~~~A~~~~~~~~~~~-~~~~~~~~ll~~~~~ 164 (485)
.+-|..++..+.... .++..||++...+.+
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 444555555554432 456677776665544
No 484
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.69 E-value=1.8e+02 Score=29.22 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=48.7
Q ss_pred HhcCChHHHHHHHHHHHHhhccCCc------chhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC
Q 011472 269 VKAGLSDKALAVLRKSEVLMMHNKF------SRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 342 (485)
.+..++..+.++|..-... .+.| ...+..|.-+|.+..+.|.|.++++...+..+.++.+--.+..+....+
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 3445666666666654443 1111 1234555666666777777777777666655555555555556666666
Q ss_pred CHHHHHHHHHHHH
Q 011472 343 GMESAEKIFEEWE 355 (485)
Q Consensus 343 ~~~~a~~~~~~~~ 355 (485)
.-++|........
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 6666666555443
No 485
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.53 E-value=3.8e+02 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=23.6
Q ss_pred HcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 199 QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
..|+++.|++.-..+- |..+|..|.......|+.+-|+..|++.+
T Consensus 655 e~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3455555554433321 33455556655556666666666665555
No 486
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.20 E-value=2.8e+02 Score=24.15 Aligned_cols=56 Identities=7% Similarity=-0.098 Sum_probs=24.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 301 ITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
.+++...|++-++++.-..+....+.+...|..-..+....-+..+|..-|..+++
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444443
No 487
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.19 E-value=4.7e+02 Score=26.69 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 200 (485)
+|-.|.++|++++|.++..+.... .......+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 455566777777777776444332 223444555555555543
No 488
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.73 E-value=1.6e+02 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011472 84 EQLRIIIKKFRLYKRFSHALQISMWMTKKS 113 (485)
Q Consensus 84 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 113 (485)
..+..++-.+...|+++.|+++.+.++++|
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 456677777888899999999999999888
No 489
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.14 E-value=1.5e+02 Score=20.75 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011472 69 PLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKS 113 (485)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 113 (485)
++++--...|+..|+..|..+++.+.-+-..+...++++.|....
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~ 73 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGS 73 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHccc
Confidence 355555566777777777777777777777777777777776543
No 490
>PRK12798 chemotaxis protein; Reviewed
Probab=36.09 E-value=3.9e+02 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=23.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH-HhcCChHHHHHHHHHH
Q 011472 200 TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC-AAASDGEGIDKIVAMM 248 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~ 248 (485)
.|+-+++.+.+..+.....++....|-.|+.+- ....++..|+++|+..
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~a 174 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQA 174 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 355555555555554444444444444444432 2233455555555554
No 491
>PRK14135 recX recombination regulator RecX; Provisional
Probab=34.97 E-value=3.2e+02 Score=24.08 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=48.6
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDL 128 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (485)
+-..|-..|.+.|-+...+..+++.+.+.|.--|.......+....+.+. ..-..+-..+.+.| .++......+.-
T Consensus 73 s~~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kG---i~~~~Ie~~l~~ 148 (263)
T PRK14135 73 TEKEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKG---IEDEIIEEALSE 148 (263)
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcC---CCHHHHHHHHHh
Confidence 33556666666666666677777777777776665555555555554432 22335556666666 455555555544
Q ss_pred HHhhCCHHHHHH
Q 011472 129 IAKVQGIEQAAS 140 (485)
Q Consensus 129 ~~~~~~~~~A~~ 140 (485)
+...+..+.|..
T Consensus 149 l~~~~~~d~a~~ 160 (263)
T PRK14135 149 YTEEDQIEVAQK 160 (263)
T ss_pred CChhhHHHHHHH
Confidence 433333343333
No 492
>PTZ00131 glycophorin-binding protein; Provisional
Probab=34.86 E-value=2.9e+02 Score=23.61 Aligned_cols=197 Identities=11% Similarity=0.037 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc----------------hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011472 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY----------------TFSILLSACAAASDGEGIDKIVAMMEADRGV 254 (485)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 254 (485)
..++.+++....+.+-+.+|-+++.. ..|+.. --..++.+|+.--.+.+-+.+|-++. ...
T Consensus 116 gqimkawaadpeyrkh~~i~y~ilt~-tdpnde~errnadnkedltsadpegqimka~aadpeyrkhl~i~y~il-t~t- 192 (413)
T PTZ00131 116 GQIMKAWAADPEYRKHIEIFYKILTH-TDPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYKIL-THT- 192 (413)
T ss_pred cHHHHHHhcCHHHHHHHHHHHHHHcc-CCCchHhhhcccccccccccCCcchHHHHHHhcCHHHHHHHHHHHHHH-ccC-
Confidence 45666666666666666666665543 122211 12345666666666666666666665 211
Q ss_pred CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC--cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 011472 255 VLDWT----VYATAASGYVKAGLSDKALAVLRKSEVLMMHNK--FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN 328 (485)
Q Consensus 255 ~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 328 (485)
.|+.. .-..++.+|+..-.+.+-+++|.++.....+.+ +...-..++.+|...-.+-+-+.+|-.+.....|+.
T Consensus 193 dpnd~tsadpegqimka~aadpeyrkh~~v~~~ilt~tdpndetsadpegqimka~aadpey~kh~~i~y~ilthtdpnd 272 (413)
T PTZ00131 193 DPNDDTSADPEGQIMKAWAADPEYRKHLEVFHKILTHTDPNDETSADPEGQIMKAWAADPEYLKHLEIFYKILTHTDPND 272 (413)
T ss_pred CCCCcccCCcchHHHHHHhcCHHHHHHHHHHHHHHccCCCCccccCCcchHHHHHHhcCHHHHHHHHHHHHHHccCCCcc
Confidence 12211 123466666666666666777766665421111 111234556666655555555555554443333333
Q ss_pred cc----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------cccHHHHHHHHHHcCCHHHHHHHHHH
Q 011472 329 RG----YICVISSLLKFDGMESAEKIFEEWESRNLCHD----------------IRIPNHLIDAYCRRGLLHKAETLIYK 388 (485)
Q Consensus 329 ~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 388 (485)
.| -..++.++..--.+..-..+|-+++.. ..|+ ...-..++.+|+..-.+.+-..+|-+
T Consensus 273 etsadpegqimka~aadpey~kh~~i~y~iltn-tdpnde~errnadnkedltsadpegqimka~aadpeyrkh~~i~y~ 351 (413)
T PTZ00131 273 ETSADPEGQIMKAWAADPEYLKHLEIFYKILTN-TDPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYK 351 (413)
T ss_pred cccCCcchHHHHHHhcCHHHHHHHHHHHHHHcC-CCCchHhhhcccccccccccCCcchHHHHHHhcChHHHHHHHHHHH
Confidence 22 234555555444444444444444322 1111 11123455666655556666666655
Q ss_pred HHH
Q 011472 389 AQL 391 (485)
Q Consensus 389 m~~ 391 (485)
++.
T Consensus 352 ilt 354 (413)
T PTZ00131 352 ILT 354 (413)
T ss_pred HHc
Confidence 553
No 493
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=34.85 E-value=3.4e+02 Score=24.46 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHH-HHH
Q 011472 459 YFIKLLTGKEIISADLQDRLL-NNI 482 (485)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~-~~~ 482 (485)
.++++.....+.++.++.-++ .|.
T Consensus 270 ~YL~df~~~~~l~~~~~~dlvk~y~ 294 (296)
T PF14649_consen 270 KYLEDFLSVFPLTPNLFEDLVKKYK 294 (296)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHh
Confidence 556666666678888888888 653
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.51 E-value=2.5e+02 Score=22.79 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhC
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQ 133 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (485)
...+.+.+.+.|+.++..=. .++..+....+.-.|.++++.+.+.+ ..++..+.--.+..+...|
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCC
No 495
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.33 E-value=2.5e+02 Score=28.34 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHcCCHHHH--HHHH-HHHHHcCCCCcHHHHHHHHHH
Q 011472 333 CVISSLLKFDGMESAEKIFEEWESR--NLCHDIRIPNHLIDAYCRRGLLHKA--ETLI-YKAQLRGTEPNVRTWYLMATG 407 (485)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a--~~~~-~~m~~~~~~p~~~~~~~li~~ 407 (485)
++..+|...|++..+.++++..... |-+.-...+|..++...+.|.++-. ..-. +.+.+..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7888888888888888888888754 2222344577777777888865421 1111 222334455566777766655
Q ss_pred Hhc
Q 011472 408 YLQ 410 (485)
Q Consensus 408 ~~~ 410 (485)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 496
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.32 E-value=6.6e+02 Score=27.59 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=51.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------cCCHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011472 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR-------RGLLHK----AETLIYKAQLRGTEPNVRTWYLMATGY 408 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~ 408 (485)
..=.++.|...++.|...-+.++...+..+..+|-. .+...+ |..++..+....+. +..+...++..+
T Consensus 569 ~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~-d~~slE~vl~~l 647 (1251)
T KOG0414|consen 569 KQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIG-DLTSLEEVLCEL 647 (1251)
T ss_pred HHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhccccc-chhhHHHHHHHH
Confidence 333566677777777766666777777777777654 123333 44445555444333 667777788888
Q ss_pred hccCCHHHHH--HHHHHH
Q 011472 409 LQNNQSEKGV--EAMKKA 424 (485)
Q Consensus 409 ~~~g~~~~A~--~~~~~~ 424 (485)
...|.++.+. .+|...
T Consensus 648 v~~~~Id~~Vi~~Lw~~f 665 (1251)
T KOG0414|consen 648 VARGYIDAAVINKLWEIF 665 (1251)
T ss_pred HhCCCccHHHHHHHHHHH
Confidence 8888777654 444444
No 497
>PRK14136 recX recombination regulator RecX; Provisional
Probab=34.30 E-value=3.5e+02 Score=24.42 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=29.3
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-hhhHHHHHHH
Q 011472 141 YFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN-YKKLDSLMHE 212 (485)
Q Consensus 141 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 212 (485)
+-.++...+.+..+....+..+ ....++.|..++++-... ...+..-..-++..+...|- ++....+++.
T Consensus 231 IrqELrQKGId~eLIEqALeei-eEDE~E~A~~L~eKK~~~-~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 231 IVSELKRHAVGDALVESVGAQL-RETEFERAQAVWRKKFGA-LPQTPAERAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHcCCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhcc-cCcCHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 3344444444444433333332 223345555555443321 22222234445555555553 3334444443
No 498
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.75 E-value=4.2e+02 Score=25.13 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 277 ALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 277 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
.+.++...... .-.+.-+.++...++++..-..|.....-......+..-|++...-.|+.....+.++.+.+
T Consensus 191 iLnil~slv~k-------sqi~~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk 263 (525)
T KOG3677|consen 191 ILNILHSLVDK-------SQISIQLTASVSNKDPALVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMPK 263 (525)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCch
Q ss_pred c--CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCC
Q 011472 357 R--NLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRW 434 (485)
Q Consensus 357 ~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 434 (485)
. |..|...+---+.-+|.-.|++.+|.+.|-...-. ++-....+...--.+...++--+-...+-.... ..
T Consensus 264 ~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l------~~ 336 (525)
T KOG3677|consen 264 EIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICL------SM 336 (525)
T ss_pred hhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHH------Hh
Q ss_pred cc---CHHHHHHHHHHHH------hcCCHhHHHHHHHHHhcCCC-CCHHHHHHHH-HHHh
Q 011472 435 KP---SKECLAACLGYYK------KERDIEGADYFIKLLTGKEI-ISADLQDRLL-NNIR 483 (485)
Q Consensus 435 ~p---~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~ 483 (485)
.| |......+...|. ..|+.+.-..+|--..-... |....|..+. .|.+
T Consensus 337 yPq~iDESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~k 396 (525)
T KOG3677|consen 337 YPQMIDESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHK 396 (525)
T ss_pred CchhhhHHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCcccccccccccc
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.68 E-value=1.9e+02 Score=20.99 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAAC 444 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l 444 (485)
..+.+++....+....+.....|.-.|.+.|+.+.|.+-|+.=. .+-|...+|.-.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK-------alFPES~~fmDF 111 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK-------ALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh-------hhCccchhHHHH
Confidence 34445555544433333344455556666777777666666543 345555555433
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.82 E-value=1.4e+02 Score=19.33 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHH
Q 011472 165 AKSAEKAEIIMQQMR 179 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~ 179 (485)
.|++=+|.++++.+=
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 445555555555443
Done!