Query 011472
Match_columns 485
No_of_seqs 612 out of 2911
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 08:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.8E-39 3E-43 318.2 42.7 416 49-482 86-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-36 4E-41 302.9 41.8 396 80-485 81-564 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-31 2.7E-35 246.5 46.4 380 89-485 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-28 4.9E-33 231.0 42.3 379 56-453 8-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-30 6.9E-35 247.7 20.6 206 240-452 8-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.4E-30 2.2E-34 244.2 23.0 204 67-306 9-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 5.9E-26 2E-30 221.4 37.7 380 85-479 8-490 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.3E-24 1.1E-28 205.4 38.7 365 80-457 23-444 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2E-24 6.9E-29 206.9 36.6 312 153-479 27-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 5.2E-24 1.8E-28 207.6 36.3 359 120-485 7-463 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.7E-23 9.4E-28 203.7 37.6 408 48-476 26-500 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.6E-21 5.6E-26 191.1 39.5 367 45-427 57-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.3E-21 7.9E-26 179.5 38.1 324 120-481 4-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.9E-21 3E-25 175.5 37.3 303 82-392 2-335 (359)
15 3hym_B Cell division cycle pro 99.9 1.1E-20 3.6E-25 173.0 33.1 282 188-481 23-314 (330)
16 3hym_B Cell division cycle pro 99.9 4.8E-20 1.6E-24 168.6 33.5 272 79-356 18-298 (330)
17 2xm6_A Protein corresponding t 99.9 7.6E-18 2.6E-22 162.8 45.2 362 70-469 29-434 (490)
18 1fch_A Peroxisomal targeting s 99.9 3.5E-20 1.2E-24 172.3 26.2 292 165-464 38-356 (368)
19 2ooe_A Cleavage stimulation fa 99.9 4.6E-18 1.6E-22 166.0 40.1 132 81-215 11-158 (530)
20 1fch_A Peroxisomal targeting s 99.9 8.6E-20 3E-24 169.7 24.3 281 122-426 67-358 (368)
21 4eqf_A PEX5-related protein; a 99.9 2.8E-20 9.7E-25 172.8 19.0 233 154-390 67-308 (365)
22 4eqf_A PEX5-related protein; a 99.8 5.8E-19 2E-23 164.0 25.8 271 186-463 64-352 (365)
23 4g1t_A Interferon-induced prot 99.8 1.1E-17 3.7E-22 161.1 34.8 373 79-474 47-466 (472)
24 3cv0_A Peroxisome targeting si 99.8 2.7E-18 9.4E-23 156.6 26.0 272 188-466 22-314 (327)
25 2xm6_A Protein corresponding t 99.8 1.3E-15 4.6E-20 147.0 44.8 345 102-483 26-411 (490)
26 3cv0_A Peroxisome targeting si 99.8 3.1E-18 1.1E-22 156.3 24.7 224 126-355 28-267 (327)
27 2ooe_A Cleavage stimulation fa 99.8 1.1E-16 3.6E-21 156.4 35.0 402 49-469 15-494 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.9E-22 148.0 25.3 245 131-391 11-263 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 2.9E-17 9.9E-22 146.6 25.7 274 90-384 6-286 (291)
30 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.8E-22 151.9 23.2 279 62-385 18-304 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.8 3.5E-20 1.2E-24 182.1 4.5 156 152-308 127-286 (1134)
32 4g1t_A Interferon-induced prot 99.8 1.8E-15 6.1E-20 145.6 36.9 347 116-485 48-444 (472)
33 1b89_A Protein (clathrin heavy 99.8 4.6E-17 1.6E-21 148.5 23.4 380 19-462 16-412 (449)
34 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-18 5.8E-23 170.4 9.1 115 295-409 128-247 (1134)
35 1xi4_A Clathrin heavy chain; a 99.7 3E-14 1E-18 145.0 39.5 342 80-482 982-1325(1630)
36 3uq3_A Heat shock protein STI1 99.7 7.3E-16 2.5E-20 135.3 23.1 226 188-468 6-237 (258)
37 1xi4_A Clathrin heavy chain; a 99.7 3.6E-14 1.2E-18 144.5 36.6 319 49-425 987-1307(1630)
38 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.4E-20 132.3 24.9 225 152-391 5-235 (258)
39 2pl2_A Hypothetical conserved 99.7 7.1E-16 2.4E-20 131.5 19.8 210 220-465 3-212 (217)
40 3e4b_A ALGK; tetratricopeptide 99.7 2.9E-15 9.9E-20 142.5 25.7 347 88-472 8-392 (452)
41 2pl2_A Hypothetical conserved 99.7 1.9E-15 6.6E-20 128.8 21.2 198 184-388 2-210 (217)
42 2ho1_A Type 4 fimbrial biogene 99.7 7.3E-15 2.5E-19 128.5 24.8 210 258-476 37-247 (252)
43 2h6f_A Protein farnesyltransfe 99.7 6.8E-15 2.3E-19 135.7 25.2 243 224-479 99-360 (382)
44 3u4t_A TPR repeat-containing p 99.7 1.3E-14 4.5E-19 128.4 26.1 233 189-426 5-249 (272)
45 3u4t_A TPR repeat-containing p 99.7 7.6E-15 2.6E-19 130.0 24.0 195 119-318 3-203 (272)
46 2vq2_A PILW, putative fimbrial 99.7 1.4E-14 4.8E-19 124.1 24.6 212 257-477 7-221 (225)
47 2q7f_A YRRB protein; TPR, prot 99.7 2.6E-15 8.7E-20 130.6 19.0 210 260-479 25-234 (243)
48 2h6f_A Protein farnesyltransfe 99.7 1.1E-14 3.8E-19 134.3 23.8 213 122-341 100-322 (382)
49 3sf4_A G-protein-signaling mod 99.7 1.8E-15 6E-20 142.4 18.6 182 274-455 163-364 (406)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.2E-15 1.4E-19 131.8 19.0 196 153-356 44-243 (275)
51 3sf4_A G-protein-signaling mod 99.7 5.2E-15 1.8E-19 139.2 18.9 279 188-467 10-336 (406)
52 2ho1_A Type 4 fimbrial biogene 99.6 7.4E-14 2.5E-18 122.1 24.7 200 188-426 38-237 (252)
53 4e6h_A MRNA 3'-END-processing 99.6 2.4E-12 8.3E-17 126.6 37.6 146 67-215 51-222 (679)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.4E-14 2.2E-18 124.2 24.0 248 198-461 16-269 (275)
55 2vq2_A PILW, putative fimbrial 99.6 9.3E-14 3.2E-18 119.0 24.3 197 225-426 11-210 (225)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-14 5.5E-19 125.5 19.6 197 224-426 25-221 (243)
57 1ouv_A Conserved hypothetical 99.6 5.7E-13 2E-17 118.0 28.6 219 82-319 5-247 (273)
58 4a1s_A PINS, partner of inscut 99.6 1.3E-14 4.3E-19 136.9 18.3 201 154-356 50-291 (411)
59 3ro2_A PINS homolog, G-protein 99.6 1.5E-14 5.2E-19 132.1 18.3 139 330-468 185-333 (338)
60 1ouv_A Conserved hypothetical 99.6 9.5E-13 3.2E-17 116.5 29.1 223 152-393 6-252 (273)
61 4a1s_A PINS, partner of inscut 99.6 1.3E-14 4.4E-19 136.8 17.8 277 122-427 51-372 (411)
62 3e4b_A ALGK; tetratricopeptide 99.6 3.5E-14 1.2E-18 135.0 20.3 378 53-466 9-420 (452)
63 3ro2_A PINS homolog, G-protein 99.6 2.9E-14 9.8E-19 130.2 18.1 269 126-426 12-331 (338)
64 3vtx_A MAMA; tetratricopeptide 99.6 6.2E-13 2.1E-17 110.1 20.9 166 257-426 4-169 (184)
65 2ond_A Cleavage stimulation fa 99.6 4.4E-12 1.5E-16 114.3 27.1 219 204-427 33-270 (308)
66 3ulq_A Response regulator aspa 99.5 9.7E-13 3.3E-17 122.7 23.3 231 228-466 109-367 (383)
67 3ulq_A Response regulator aspa 99.5 4.3E-13 1.5E-17 125.2 19.8 297 94-427 23-368 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 1.3E-12 4.3E-17 108.2 19.5 165 222-391 5-169 (184)
69 2ond_A Cleavage stimulation fa 99.5 7.7E-12 2.6E-16 112.7 26.0 183 204-391 81-269 (308)
70 4abn_A Tetratricopeptide repea 99.5 5.3E-13 1.8E-17 127.7 18.1 211 168-386 84-315 (474)
71 4abn_A Tetratricopeptide repea 99.5 4.5E-13 1.6E-17 128.2 17.3 210 135-351 84-315 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 6.8E-14 2.3E-18 126.4 10.6 240 152-426 27-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.5 7.4E-14 2.5E-18 126.1 10.4 236 225-467 30-307 (311)
74 4e6h_A MRNA 3'-END-processing 99.5 3.1E-10 1E-14 111.8 36.5 370 99-479 48-548 (679)
75 3q15_A PSP28, response regulat 99.5 2.2E-11 7.6E-16 113.2 26.1 229 229-466 108-364 (378)
76 3q15_A PSP28, response regulat 99.5 7.6E-12 2.6E-16 116.4 22.4 230 194-426 108-364 (378)
77 1hz4_A MALT regulatory protein 99.5 6.8E-11 2.3E-15 109.7 27.5 304 154-470 16-352 (373)
78 1hz4_A MALT regulatory protein 99.4 9.2E-11 3.1E-15 108.8 25.6 236 155-391 56-321 (373)
79 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.9E-16 101.6 16.3 165 296-468 10-174 (186)
80 3as5_A MAMA; tetratricopeptide 99.4 4E-11 1.4E-15 98.9 18.8 161 225-390 11-171 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.4 1.8E-11 6.2E-16 121.9 18.8 164 258-426 9-173 (723)
82 4i17_A Hypothetical protein; T 99.4 3.8E-11 1.3E-15 103.0 18.0 207 256-479 5-221 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-11 8.8E-16 120.8 19.0 166 221-391 8-173 (723)
84 1qqe_A Vesicular transport pro 99.4 5.5E-11 1.9E-15 106.2 19.4 196 268-470 47-272 (292)
85 3edt_B KLC 2, kinesin light ch 99.3 2.5E-11 8.6E-16 107.6 16.3 121 198-318 12-151 (283)
86 4i17_A Hypothetical protein; T 99.3 1E-10 3.5E-15 100.3 19.0 132 152-286 7-145 (228)
87 3edt_B KLC 2, kinesin light ch 99.3 3.1E-11 1.1E-15 107.0 15.9 155 164-319 13-194 (283)
88 1qqe_A Vesicular transport pro 99.3 2.9E-10 1E-14 101.4 18.0 192 232-425 47-267 (292)
89 3urz_A Uncharacterized protein 99.2 1.1E-09 3.8E-14 92.2 17.0 157 264-425 10-184 (208)
90 3qky_A Outer membrane assembly 99.2 2E-09 6.8E-14 94.3 18.9 186 80-287 12-224 (261)
91 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 95.2 17.9 186 222-427 15-224 (261)
92 2fo7_A Synthetic consensus TPR 99.1 2.1E-09 7E-14 83.2 15.6 130 331-468 4-133 (136)
93 3mv2_B Coatomer subunit epsilo 99.1 2.8E-09 9.6E-14 93.3 17.7 141 171-318 85-235 (310)
94 2fo7_A Synthetic consensus TPR 99.1 2.7E-09 9.2E-14 82.5 15.8 125 263-390 6-130 (136)
95 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.9E-13 89.5 21.0 78 241-320 85-162 (310)
96 3urz_A Uncharacterized protein 99.1 2.5E-09 8.7E-14 90.0 16.6 179 85-287 6-186 (208)
97 3dra_A Protein farnesyltransfe 99.1 4.5E-08 1.5E-12 86.6 24.8 232 239-479 50-300 (306)
98 2pzi_A Probable serine/threoni 99.1 1.2E-09 4.2E-14 109.2 16.2 172 269-452 402-582 (681)
99 4ga2_A E3 SUMO-protein ligase 99.1 5.1E-10 1.7E-14 88.7 10.6 143 334-485 3-148 (150)
100 3qou_A Protein YBBN; thioredox 99.1 4.2E-09 1.4E-13 93.5 17.7 156 125-284 123-281 (287)
101 3dra_A Protein farnesyltransfe 99.1 6E-08 2E-12 85.8 24.7 214 136-355 50-285 (306)
102 2pzi_A Probable serine/threoni 99.1 3.6E-09 1.2E-13 105.9 19.1 174 233-413 402-583 (681)
103 2uy1_A Cleavage stimulation fa 99.1 6.9E-08 2.4E-12 92.3 26.0 340 97-465 28-411 (493)
104 2yhc_A BAMD, UPF0169 lipoprote 99.1 3E-08 1E-12 84.5 21.2 205 224-471 6-217 (225)
105 2r5s_A Uncharacterized protein 99.1 2.6E-09 9.1E-14 87.2 13.6 159 124-286 11-172 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.6E-08 8.9E-13 84.9 20.3 65 118-182 3-71 (225)
107 2r5s_A Uncharacterized protein 99.1 2.2E-09 7.4E-14 87.8 12.7 160 263-426 11-172 (176)
108 4ga2_A E3 SUMO-protein ligase 99.0 8E-10 2.8E-14 87.6 9.2 141 267-412 6-148 (150)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 1E-08 3.5E-13 92.1 17.6 95 260-355 118-222 (307)
110 3qou_A Protein YBBN; thioredox 99.0 9.5E-09 3.2E-13 91.2 16.0 168 256-426 115-283 (287)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 1.8E-08 6.3E-13 90.4 18.0 201 95-321 3-222 (307)
112 2vsy_A XCC0866; transferase, g 99.0 4.8E-09 1.6E-13 103.1 15.1 153 271-427 2-157 (568)
113 2vsy_A XCC0866; transferase, g 99.0 1.2E-08 4.2E-13 100.1 18.0 149 97-249 3-155 (568)
114 2uy1_A Cleavage stimulation fa 99.0 6.6E-07 2.2E-11 85.5 27.8 333 95-465 6-381 (493)
115 3rjv_A Putative SEL1 repeat pr 99.0 3.9E-08 1.3E-12 82.9 17.0 29 152-180 18-46 (212)
116 3rjv_A Putative SEL1 repeat pr 98.9 5.9E-08 2E-12 81.8 17.6 175 102-288 5-198 (212)
117 2c2l_A CHIP, carboxy terminus 98.9 2.2E-08 7.4E-13 88.6 13.2 196 257-468 3-200 (281)
118 3u3w_A Transcriptional activat 98.9 4.4E-07 1.5E-11 80.7 21.7 161 126-286 82-265 (293)
119 3u3w_A Transcriptional activat 98.9 3.2E-07 1.1E-11 81.7 20.8 133 333-465 120-264 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-07 4.4E-12 84.2 16.9 130 158-287 121-266 (293)
121 3q7a_A Farnesyltransferase alp 98.8 1.4E-06 4.7E-11 77.9 23.0 67 240-310 185-258 (349)
122 3q7a_A Farnesyltransferase alp 98.8 1.2E-06 4E-11 78.4 22.5 234 240-479 72-344 (349)
123 4f3v_A ESX-1 secretion system 98.8 2.6E-08 8.9E-13 86.0 11.5 199 270-479 18-248 (282)
124 4gco_A Protein STI-1; structur 98.8 1.3E-07 4.3E-12 72.2 13.9 108 365-479 15-122 (126)
125 3gw4_A Uncharacterized protein 98.8 1.2E-07 4E-12 79.2 14.9 96 331-426 69-175 (203)
126 1na0_A Designed protein CTPR3; 98.8 1.6E-07 5.4E-12 71.2 14.2 115 364-485 10-125 (125)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.6E-07 1.6E-11 76.3 18.2 91 191-287 10-100 (213)
128 3gw4_A Uncharacterized protein 98.8 4.6E-08 1.6E-12 81.7 11.8 139 329-467 27-176 (203)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 2.4E-06 8.3E-11 75.9 23.6 169 296-465 77-264 (293)
130 2c2l_A CHIP, carboxy terminus 98.8 5.2E-08 1.8E-12 86.1 12.3 195 186-391 3-198 (281)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.2E-07 7.4E-12 78.3 15.7 131 334-469 12-152 (213)
132 1a17_A Serine/threonine protei 98.8 2.6E-07 9E-12 74.1 14.8 93 262-356 17-109 (166)
133 4gco_A Protein STI-1; structur 98.7 2.1E-07 7E-12 71.0 12.8 93 262-356 17-109 (126)
134 3dss_A Geranylgeranyl transfer 98.7 7.4E-06 2.5E-10 72.9 24.5 193 275-479 91-316 (331)
135 2lni_A Stress-induced-phosphop 98.7 1.7E-07 6E-12 72.0 11.8 112 365-483 18-130 (133)
136 3gyz_A Chaperone protein IPGC; 98.7 1.2E-07 3.9E-12 74.7 10.2 92 262-355 40-131 (151)
137 1a17_A Serine/threonine protei 98.7 6.6E-07 2.3E-11 71.8 15.1 96 189-287 15-110 (166)
138 1na0_A Designed protein CTPR3; 98.7 5.7E-07 2E-11 68.0 13.9 25 261-285 12-36 (125)
139 2vyi_A SGTA protein; chaperone 98.7 4.1E-07 1.4E-11 69.5 13.1 95 330-426 14-108 (131)
140 2vyi_A SGTA protein; chaperone 98.7 4.2E-07 1.4E-11 69.4 12.6 55 262-318 16-70 (131)
141 2e2e_A Formate-dependent nitri 98.7 1.5E-07 5.2E-12 76.7 10.5 119 234-356 22-143 (177)
142 2lni_A Stress-induced-phosphop 98.6 7E-07 2.4E-11 68.5 13.6 116 187-307 16-131 (133)
143 2e2e_A Formate-dependent nitri 98.6 1.4E-07 4.8E-12 76.9 10.1 118 307-426 23-143 (177)
144 3gyz_A Chaperone protein IPGC; 98.6 4.1E-07 1.4E-11 71.6 12.1 93 224-320 38-130 (151)
145 4f3v_A ESX-1 secretion system 98.6 2E-07 6.7E-12 80.5 10.3 129 297-427 105-237 (282)
146 2vgx_A Chaperone SYCD; alterna 98.6 2.9E-07 1E-11 72.4 10.5 95 330-426 23-117 (148)
147 2vgx_A Chaperone SYCD; alterna 98.6 4E-07 1.4E-11 71.6 11.0 97 259-357 22-118 (148)
148 2fbn_A 70 kDa peptidylprolyl i 98.6 8.7E-08 3E-12 79.8 7.5 131 330-468 40-187 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.6 1.7E-06 5.7E-11 64.6 13.9 109 364-479 5-113 (118)
150 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.7E-11 79.8 14.6 87 295-382 197-283 (336)
151 3dss_A Geranylgeranyl transfer 98.6 8E-05 2.7E-09 66.2 26.1 187 95-287 41-267 (331)
152 2kck_A TPR repeat; tetratricop 98.6 1.2E-06 4.1E-11 64.8 12.3 102 362-470 5-109 (112)
153 3upv_A Heat shock protein STI1 98.5 1.9E-06 6.3E-11 65.6 13.1 96 366-468 7-102 (126)
154 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-06 5.3E-11 78.7 14.8 94 259-354 197-291 (336)
155 2fbn_A 70 kDa peptidylprolyl i 98.5 8.8E-08 3E-12 79.8 5.7 28 260-287 40-67 (198)
156 4gcn_A Protein STI-1; structur 98.5 1.5E-06 5E-11 66.3 11.8 96 331-427 11-112 (127)
157 3upv_A Heat shock protein STI1 98.5 1.6E-06 5.4E-11 66.0 11.7 91 263-355 9-99 (126)
158 2xcb_A PCRH, regulatory protei 98.5 1.9E-06 6.4E-11 67.2 12.3 95 261-357 21-115 (142)
159 2dba_A Smooth muscle cell asso 98.5 2.8E-06 9.4E-11 66.5 13.3 108 364-479 29-140 (148)
160 1elw_A TPR1-domain of HOP; HOP 98.5 3.2E-06 1.1E-10 63.0 13.0 92 262-355 8-99 (118)
161 2xcb_A PCRH, regulatory protei 98.4 3E-06 1E-10 66.1 12.4 96 189-287 20-115 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.4 4E-06 1.4E-10 67.2 13.2 98 187-287 11-108 (164)
163 1hxi_A PEX5, peroxisome target 98.4 3E-06 1E-10 63.9 11.6 98 365-470 19-117 (121)
164 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.6E-10 75.5 18.5 165 155-319 58-241 (434)
165 4b4t_Q 26S proteasome regulato 98.4 8.2E-06 2.8E-10 76.9 17.0 200 266-466 12-244 (434)
166 3ro3_A PINS homolog, G-protein 98.4 1.6E-06 5.4E-11 69.0 10.4 102 365-466 51-157 (164)
167 2kck_A TPR repeat; tetratricop 98.4 2.3E-06 7.9E-11 63.2 10.5 91 224-318 8-101 (112)
168 3sz7_A HSC70 cochaperone (SGT) 98.4 5.7E-06 2E-10 66.2 13.4 97 259-357 12-108 (164)
169 4gcn_A Protein STI-1; structur 98.4 4E-06 1.4E-10 63.8 11.5 58 260-319 10-67 (127)
170 2xev_A YBGF; tetratricopeptide 98.4 8.8E-06 3E-10 61.9 13.2 90 334-426 8-104 (129)
171 3q49_B STIP1 homology and U bo 98.4 8.3E-06 2.8E-10 62.8 13.1 96 258-355 9-104 (137)
172 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5E-10 62.3 14.4 58 259-318 66-123 (148)
173 3q49_B STIP1 homology and U bo 98.3 6.8E-06 2.3E-10 63.3 12.1 99 186-287 8-106 (137)
174 1elr_A TPR2A-domain of HOP; HO 98.3 6.5E-06 2.2E-10 62.6 11.7 96 330-426 6-107 (131)
175 1elr_A TPR2A-domain of HOP; HO 98.3 4.7E-06 1.6E-10 63.4 10.3 54 263-318 9-62 (131)
176 1hxi_A PEX5, peroxisome target 98.3 6E-06 2.1E-10 62.2 10.3 84 231-318 26-109 (121)
177 2xev_A YBGF; tetratricopeptide 98.3 1.5E-05 5.3E-10 60.5 12.4 87 128-215 11-104 (129)
178 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.2E-10 63.7 11.8 27 154-180 11-37 (164)
179 1wao_1 Serine/threonine protei 98.2 1.2E-05 4.2E-10 76.5 13.5 117 92-211 15-134 (477)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.3E-05 7.7E-10 74.4 14.6 124 259-383 269-405 (457)
181 3k9i_A BH0479 protein; putativ 98.2 3.8E-06 1.3E-10 62.9 7.1 86 200-287 3-90 (117)
182 1wao_1 Serine/threonine protei 98.2 5.2E-06 1.8E-10 79.1 9.3 116 269-387 17-134 (477)
183 1dce_A Protein (RAB geranylger 98.2 8.8E-05 3E-09 72.0 17.8 171 136-312 46-244 (567)
184 3k9i_A BH0479 protein; putativ 98.2 2.9E-06 1E-10 63.5 5.9 85 341-426 3-89 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.1 2.1E-05 7.1E-10 72.2 12.6 27 260-286 225-251 (370)
186 3rkv_A Putative peptidylprolyl 98.1 2.6E-05 8.8E-10 62.2 11.6 96 330-426 13-125 (162)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.8E-05 1.3E-09 72.8 14.4 128 224-354 270-412 (457)
188 2hr2_A Hypothetical protein; a 98.1 0.0001 3.6E-09 57.3 13.6 81 365-445 59-149 (159)
189 2hr2_A Hypothetical protein; a 98.1 4.4E-05 1.5E-09 59.4 10.9 61 154-215 59-130 (159)
190 1dce_A Protein (RAB geranylger 98.1 0.00012 4E-09 71.2 16.4 115 274-391 45-172 (567)
191 1ihg_A Cyclophilin 40; ppiase 98.0 3.3E-05 1.1E-09 70.8 11.4 25 225-249 226-250 (370)
192 3rkv_A Putative peptidylprolyl 98.0 5.9E-05 2E-09 60.0 11.4 59 259-319 64-122 (162)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 2.1E-05 7.1E-10 71.3 8.9 59 260-320 232-290 (338)
194 1na3_A Designed protein CTPR2; 98.0 6.1E-05 2.1E-09 52.9 9.6 82 398-485 9-91 (91)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 2.1E-05 7.2E-10 71.3 8.5 61 296-356 232-292 (338)
196 1klx_A Cysteine rich protein B 97.9 0.00033 1.1E-08 53.9 13.0 111 97-217 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.9 0.00013 4.5E-09 53.4 10.1 90 364-462 5-102 (111)
198 1klx_A Cysteine rich protein B 97.9 0.00035 1.2E-08 53.7 12.8 113 342-470 9-129 (138)
199 2kat_A Uncharacterized protein 97.8 0.00016 5.5E-09 53.6 10.0 80 205-287 3-82 (115)
200 1zu2_A Mitochondrial import re 97.8 4.9E-05 1.7E-09 59.1 7.1 95 132-229 15-131 (158)
201 3n71_A Histone lysine methyltr 97.8 0.00015 5.2E-09 68.6 11.5 62 330-391 395-463 (490)
202 3n71_A Histone lysine methyltr 97.8 0.00026 8.8E-09 67.1 13.0 130 337-466 318-463 (490)
203 2kat_A Uncharacterized protein 97.8 0.00012 4.2E-09 54.2 8.6 79 346-426 3-81 (115)
204 2l6j_A TPR repeat-containing p 97.7 0.00013 4.3E-09 53.5 8.1 59 260-320 6-64 (111)
205 1na3_A Designed protein CTPR2; 97.7 0.00038 1.3E-08 48.7 9.7 60 225-286 12-71 (91)
206 1zu2_A Mitochondrial import re 97.6 0.0002 7E-09 55.6 7.4 98 340-447 14-133 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.0004 1.4E-08 49.9 8.1 64 362-426 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.5 0.00051 1.7E-08 49.3 8.5 56 227-284 12-67 (100)
209 3ly7_A Transcriptional activat 97.4 0.004 1.4E-07 55.7 13.9 62 186-249 276-337 (372)
210 3ly7_A Transcriptional activat 97.3 0.013 4.5E-07 52.3 16.7 74 360-442 274-347 (372)
211 3qww_A SET and MYND domain-con 97.0 0.0039 1.3E-07 58.0 10.8 91 376-466 311-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.0 0.0015 5E-08 46.6 6.1 56 230-287 8-64 (99)
213 3mkq_A Coatomer beta'-subunit; 96.9 0.069 2.4E-06 54.5 20.3 46 198-249 663-708 (814)
214 3qwp_A SET and MYND domain-con 96.9 0.0081 2.8E-07 55.9 11.4 97 370-466 294-399 (429)
215 3bee_A Putative YFRE protein; 96.8 0.025 8.6E-07 39.6 11.1 69 256-326 4-75 (93)
216 2kc7_A BFR218_protein; tetratr 96.8 0.005 1.7E-07 43.7 7.8 57 369-427 6-64 (99)
217 2v5f_A Prolyl 4-hydroxylase su 96.8 0.014 4.8E-07 42.0 10.1 73 401-473 8-81 (104)
218 3qwp_A SET and MYND domain-con 96.7 0.026 8.9E-07 52.5 13.7 89 127-215 295-399 (429)
219 3bee_A Putative YFRE protein; 96.7 0.014 4.7E-07 40.9 8.9 69 396-470 4-75 (93)
220 1pc2_A Mitochondria fission pr 96.7 0.021 7.2E-07 43.8 10.3 81 344-426 14-99 (152)
221 3qww_A SET and MYND domain-con 96.6 0.0048 1.6E-07 57.4 8.1 26 365-390 384-409 (433)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.042 1.4E-06 56.1 14.8 153 93-285 609-763 (814)
223 1pc2_A Mitochondria fission pr 96.1 0.083 2.8E-06 40.5 10.8 87 380-473 15-106 (152)
224 3mkq_B Coatomer subunit alpha; 96.1 0.35 1.2E-05 38.1 14.4 105 126-249 12-116 (177)
225 4h7y_A Dual specificity protei 96.0 0.085 2.9E-06 39.9 10.2 101 295-396 14-127 (161)
226 3u64_A Protein TP_0956; tetrat 96.0 0.07 2.4E-06 45.8 11.1 94 134-227 178-282 (301)
227 3u64_A Protein TP_0956; tetrat 96.0 0.066 2.3E-06 45.9 10.7 107 99-213 179-295 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.9 0.078 2.7E-06 37.9 9.7 60 259-318 6-70 (104)
229 3mkq_B Coatomer subunit alpha; 95.9 0.41 1.4E-05 37.6 14.2 44 164-213 17-60 (177)
230 4ady_A RPN2, 26S proteasome re 95.9 1.8 6.2E-05 43.9 23.6 157 302-466 498-657 (963)
231 4ady_A RPN2, 26S proteasome re 95.8 1.9 6.5E-05 43.8 21.6 118 270-390 536-656 (963)
232 3lvg_A Clathrin heavy chain 1; 95.8 3.4E-06 1.1E-10 76.7 -17.0 264 151-463 53-316 (624)
233 1nzn_A CGI-135 protein, fissio 95.7 0.16 5.5E-06 37.4 10.4 93 375-474 13-110 (126)
234 4h7y_A Dual specificity protei 95.6 0.21 7.2E-06 37.8 10.7 62 412-479 74-135 (161)
235 3lvg_A Clathrin heavy chain 1; 95.6 2.7E-05 9.2E-10 70.9 -12.0 248 45-315 52-325 (624)
236 1wy6_A Hypothetical protein ST 95.4 0.54 1.9E-05 34.8 16.7 64 296-359 93-156 (172)
237 4gns_B Protein CSD3, chitin bi 94.3 0.29 9.9E-06 48.5 11.1 52 266-319 345-396 (754)
238 1nzn_A CGI-135 protein, fissio 94.1 0.41 1.4E-05 35.2 8.7 84 202-287 16-103 (126)
239 4b4t_P 26S proteasome regulato 94.0 3.9 0.00013 38.1 19.8 51 236-286 30-84 (445)
240 4b4t_P 26S proteasome regulato 93.9 4.1 0.00014 37.9 21.2 190 200-391 29-246 (445)
241 1wy6_A Hypothetical protein ST 93.4 1.7 6E-05 32.2 15.0 67 186-254 90-156 (172)
242 4fhn_B Nucleoporin NUP120; pro 93.4 1.5 5.2E-05 46.5 15.3 193 263-466 817-1049(1139)
243 4gns_B Protein CSD3, chitin bi 93.4 0.38 1.3E-05 47.7 9.9 127 333-465 253-398 (754)
244 2ff4_A Probable regulatory pro 93.3 1.3 4.6E-05 40.3 13.1 129 82-225 111-248 (388)
245 4fhn_B Nucleoporin NUP120; pro 92.2 6.2 0.00021 41.9 18.0 61 225-285 902-965 (1139)
246 1v54_E Cytochrome C oxidase po 91.6 1.4 4.9E-05 30.6 7.9 35 433-467 40-74 (109)
247 2ff4_A Probable regulatory pro 91.5 0.68 2.3E-05 42.3 8.6 74 368-442 176-249 (388)
248 3ffl_A Anaphase-promoting comp 90.8 3.2 0.00011 32.1 10.2 101 366-466 23-150 (167)
249 1v54_E Cytochrome C oxidase po 90.6 2.9 9.8E-05 29.1 8.6 47 240-287 28-74 (109)
250 3o48_A Mitochondria fission 1 90.1 4.5 0.00015 29.9 11.8 74 395-473 37-113 (134)
251 1qsa_A Protein (soluble lytic 88.7 18 0.00063 35.1 26.0 98 134-237 54-151 (618)
252 3o48_A Mitochondria fission 1 88.4 5.1 0.00017 29.6 9.3 66 361-426 38-106 (134)
253 2y69_E Cytochrome C oxidase su 88.1 3.3 0.00011 30.5 7.9 47 433-479 83-129 (152)
254 4b4t_R RPN7, 26S proteasome re 87.8 3.6 0.00012 38.1 10.5 97 330-426 133-236 (429)
255 3ffl_A Anaphase-promoting comp 87.6 3 0.0001 32.2 8.0 28 85-112 65-92 (167)
256 1zbp_A Hypothetical protein VP 86.8 9.9 0.00034 32.1 11.3 114 267-392 6-129 (273)
257 2y69_E Cytochrome C oxidase su 85.5 9.1 0.00031 28.3 9.4 59 241-302 72-130 (152)
258 1y8m_A FIS1; mitochondria, unk 85.0 10 0.00035 28.4 10.8 66 150-215 37-105 (144)
259 2wpv_A GET4, UPF0363 protein Y 84.6 20 0.00067 31.3 21.6 181 127-355 21-215 (312)
260 3lpz_A GET4 (YOR164C homolog); 84.4 21 0.00071 31.4 17.5 168 259-466 36-215 (336)
261 3kea_A K1L; tropism, ANK repea 82.3 23 0.00078 30.3 14.0 19 300-318 164-182 (285)
262 1wdy_A 2-5A-dependent ribonucl 82.2 18 0.00063 30.5 12.0 43 341-383 192-236 (285)
263 1y8m_A FIS1; mitochondria, unk 81.9 14 0.00048 27.7 13.8 65 362-426 38-105 (144)
264 3txn_A 26S proteasome regulato 81.7 30 0.001 31.3 21.3 160 192-354 104-281 (394)
265 1zbp_A Hypothetical protein VP 81.1 7.8 0.00027 32.7 8.4 60 91-152 5-64 (273)
266 4b4t_R RPN7, 26S proteasome re 81.0 20 0.00068 33.1 12.2 100 188-287 132-237 (429)
267 2uwj_G Type III export protein 80.4 12 0.00041 25.9 9.3 80 95-182 18-98 (115)
268 2p58_C Putative type III secre 79.9 13 0.00043 25.8 9.9 80 95-182 19-99 (116)
269 1n11_A Ankyrin; clathrin, BAND 79.5 15 0.00051 33.8 11.1 317 70-416 29-359 (437)
270 1n11_A Ankyrin; clathrin, BAND 79.2 19 0.00063 33.2 11.6 296 70-398 62-372 (437)
271 3lpz_A GET4 (YOR164C homolog); 78.8 34 0.0011 30.1 23.1 184 126-356 19-215 (336)
272 2uwj_G Type III export protein 77.5 10 0.00035 26.3 6.4 79 132-217 19-98 (115)
273 1k1a_A B-cell lymphoma 3-encod 74.8 31 0.0011 28.2 10.9 26 160-185 14-39 (241)
274 3eu9_A Huntingtin-interacting 73.1 21 0.00071 29.2 9.3 21 370-390 214-234 (240)
275 3esl_A Checkpoint serine/threo 71.5 38 0.0013 27.2 9.9 52 134-185 94-148 (202)
276 3esl_A Checkpoint serine/threo 71.1 38 0.0013 27.1 9.8 45 274-318 95-139 (202)
277 1qsa_A Protein (soluble lytic 70.2 83 0.0028 30.6 31.4 402 9-464 9-439 (618)
278 3e3v_A Regulatory protein RECX 69.4 39 0.0013 26.5 9.8 76 47-126 32-107 (177)
279 3txn_A 26S proteasome regulato 67.9 71 0.0024 28.9 23.3 166 299-472 104-289 (394)
280 3bu8_A Telomeric repeat-bindin 67.0 32 0.0011 27.8 8.0 49 99-149 88-144 (235)
281 1wdy_A 2-5A-dependent ribonucl 66.6 45 0.0015 28.0 10.3 17 127-143 44-60 (285)
282 2zu6_B Programmed cell death p 66.1 66 0.0023 27.9 11.2 25 225-249 6-30 (307)
283 3eiq_C Programmed cell death p 65.7 74 0.0025 28.3 14.7 66 401-472 220-287 (358)
284 3eu9_A Huntingtin-interacting 63.2 33 0.0011 27.9 8.5 15 408-422 217-231 (240)
285 1k1a_A B-cell lymphoma 3-encod 62.5 51 0.0017 26.8 9.6 84 194-283 13-101 (241)
286 4a1g_A Mitotic checkpoint seri 61.9 50 0.0017 25.1 11.8 48 138-185 84-134 (152)
287 2wpv_A GET4, UPF0363 protein Y 59.8 88 0.003 27.2 23.7 167 190-390 36-215 (312)
288 2d2s_A Exocyst complex compone 58.9 76 0.0026 26.2 10.2 31 256-286 89-119 (235)
289 2d2s_A Exocyst complex compone 58.6 53 0.0018 27.2 8.6 90 88-178 23-117 (235)
290 3hra_A Ankyrin repeat family p 57.2 36 0.0012 26.8 7.5 15 348-362 158-172 (201)
291 2p58_C Putative type III secre 55.0 50 0.0017 22.9 9.5 83 378-475 22-106 (116)
292 1ug3_A EIF4GI, eukaryotic prot 52.9 90 0.0031 27.5 9.7 147 155-319 14-166 (339)
293 2nsz_A Programmed cell death p 52.0 49 0.0017 24.2 6.6 25 366-390 10-34 (129)
294 4b4t_S RPN3, 26S proteasome re 52.0 1.6E+02 0.0054 27.8 12.6 65 152-216 231-299 (523)
295 3eiq_C Programmed cell death p 51.6 1.3E+02 0.0045 26.7 11.0 61 298-358 221-283 (358)
296 3b7b_A Euchromatic histone-lys 51.4 62 0.0021 26.2 8.2 19 408-426 217-235 (237)
297 4gq2_M Nucleoporin NUP120; bet 50.7 1.1E+02 0.0036 31.8 11.1 48 365-412 899-950 (950)
298 4aez_C MAD3, mitotic spindle c 50.0 43 0.0015 27.4 6.4 48 380-427 131-179 (223)
299 3aji_A 26S proteasome non-ATPa 49.7 69 0.0024 25.8 8.2 14 130-143 14-27 (231)
300 2jul_A Calsenilin; EF-hand, ca 49.7 85 0.0029 26.1 8.9 150 62-213 88-255 (256)
301 3ltm_A Alpha-REP4; protein eng 49.7 96 0.0033 24.6 18.9 112 80-202 30-141 (211)
302 4g8k_A 2-5A-dependent ribonucl 49.0 1.3E+02 0.0045 26.0 15.0 15 303-317 245-259 (337)
303 3kea_A K1L; tropism, ANK repea 48.8 1.2E+02 0.0042 25.6 12.8 144 268-426 102-246 (285)
304 3jxi_A Vanilloid receptor-rela 48.7 1E+02 0.0036 25.3 9.4 52 197-248 12-72 (260)
305 1ug3_A EIF4GI, eukaryotic prot 46.8 51 0.0017 29.1 7.1 72 122-197 14-87 (339)
306 4b4t_S RPN3, 26S proteasome re 46.6 1.1E+02 0.0039 28.7 9.5 21 225-246 345-365 (523)
307 2r9g_A AAA ATPase, central reg 46.5 1.1E+02 0.0038 24.4 9.8 64 189-254 13-84 (204)
308 2qx5_A Nucleoporin NIC96; mRNA 45.6 2.3E+02 0.0078 27.8 16.6 26 86-111 155-180 (661)
309 3ljn_A Hypothetical protein; a 45.1 1.6E+02 0.0054 25.8 13.0 83 301-388 177-266 (364)
310 2ion_A PDCD4, programmed cell 44.7 38 0.0013 25.8 5.1 57 366-426 12-73 (152)
311 2ion_A PDCD4, programmed cell 43.7 91 0.0031 23.6 7.1 23 262-284 13-35 (152)
312 1s6c_A KV4 potassium channel-i 43.2 1.1E+02 0.0038 23.4 8.6 42 169-212 140-181 (183)
313 2b7e_A PRE-mRNA processing pro 42.8 25 0.00086 21.6 3.0 29 169-197 3-31 (59)
314 3bge_A Predicted ATPase; struc 42.6 1.3E+02 0.0043 24.0 8.2 46 191-236 8-56 (201)
315 2nsz_A Programmed cell death p 42.2 98 0.0034 22.6 8.5 23 262-284 11-33 (129)
316 2zu6_B Programmed cell death p 42.1 1.7E+02 0.0058 25.3 9.5 25 155-179 6-30 (307)
317 3bqo_A Telomeric repeat-bindin 41.9 21 0.00071 28.3 3.2 22 159-180 124-145 (211)
318 2rfa_A Transient receptor pote 40.9 1.4E+02 0.0047 23.9 10.0 19 269-287 162-180 (232)
319 4gq2_M Nucleoporin NUP120; bet 40.4 3.3E+02 0.011 28.1 13.2 133 123-272 814-950 (950)
320 3d5l_A Regulatory protein RECX 39.8 1.3E+02 0.0046 24.4 8.1 43 52-94 80-122 (221)
321 4a1g_A Mitotic checkpoint seri 39.4 1.2E+02 0.0042 22.9 10.5 51 170-220 83-134 (152)
322 4ets_A Ferric uptake regulatio 38.2 60 0.0021 24.9 5.5 52 432-484 27-82 (162)
323 3b7b_A Euchromatic histone-lys 37.7 57 0.0019 26.5 5.8 19 126-144 81-99 (237)
324 3ljn_A Hypothetical protein; a 37.1 1.1E+02 0.0037 27.0 7.9 47 303-353 217-266 (364)
325 3ltm_A Alpha-REP4; protein eng 36.9 1.5E+02 0.0053 23.3 18.3 153 118-286 32-184 (211)
326 3t8k_A Uncharacterized protein 36.4 1.5E+02 0.0052 23.1 8.4 128 128-257 12-148 (186)
327 3ctd_A Putative ATPase, AAA fa 36.4 1.7E+02 0.0057 23.6 8.8 100 186-287 31-138 (213)
328 1wgl_A TOLL-interacting protei 36.2 18 0.00061 22.3 1.7 23 164-186 35-57 (59)
329 2pnn_A Transient receptor pote 35.9 1.4E+02 0.0049 24.7 8.2 51 197-247 20-79 (273)
330 3hra_A Ankyrin repeat family p 35.4 1.5E+02 0.0053 22.9 8.5 16 382-397 157-172 (201)
331 3ygs_P Procaspase 9; apoptosis 35.2 1.1E+02 0.0037 21.0 5.9 36 134-171 52-87 (97)
332 3bu8_A Telomeric repeat-bindin 35.0 1.8E+02 0.0062 23.5 7.8 22 405-426 121-142 (235)
333 1bpo_A Protein (clathrin); cla 34.8 2.8E+02 0.0096 25.7 10.0 45 236-284 343-387 (494)
334 2keb_A DNA polymerase subunit 33.8 1.2E+02 0.0039 20.9 6.2 59 382-444 28-88 (101)
335 2fu4_A Ferric uptake regulatio 33.5 99 0.0034 20.1 6.7 60 72-133 6-66 (83)
336 1y1x_A Leishmania major homolo 33.4 1.7E+02 0.0057 22.7 10.2 76 136-216 93-171 (191)
337 3dd4_A KV channel-interacting 33.0 1.1E+02 0.0039 24.7 6.9 129 81-211 82-226 (229)
338 2znd_A Programmed cell death p 32.9 1.6E+02 0.0054 22.2 8.1 23 188-213 127-149 (172)
339 4aez_C MAD3, mitotic spindle c 32.8 2E+02 0.0069 23.4 8.7 53 169-221 131-184 (223)
340 3d9h_A CDNA FLJ77766, highly s 32.7 2.2E+02 0.0076 23.9 10.6 8 373-380 229-236 (285)
341 4ets_A Ferric uptake regulatio 32.5 1.2E+02 0.004 23.3 6.3 59 73-133 23-83 (162)
342 2ijq_A Hypothetical protein; s 32.4 1.5E+02 0.0052 22.7 6.7 50 341-390 45-102 (161)
343 2wvi_A Mitotic checkpoint seri 32.3 1.7E+02 0.0059 22.5 10.7 50 171-220 79-129 (164)
344 2fe3_A Peroxide operon regulat 31.3 1.6E+02 0.0055 21.9 7.1 59 213-273 13-71 (145)
345 2fe3_A Peroxide operon regulat 30.8 1.6E+02 0.0056 21.8 7.7 58 251-310 15-72 (145)
346 3jxi_A Vanilloid receptor-rela 30.7 71 0.0024 26.4 5.3 21 93-113 12-32 (260)
347 3mwm_A ZUR, putative metal upt 30.5 1.1E+02 0.0038 22.6 5.8 47 52-99 18-64 (139)
348 4fke_A Aminopeptidase N; zinc 30.5 4.6E+02 0.016 26.9 18.6 94 87-181 690-787 (909)
349 2xig_A Ferric uptake regulatio 30.1 1.6E+02 0.0056 22.0 6.7 14 236-249 40-53 (150)
350 1mzb_A Ferric uptake regulatio 29.8 1.6E+02 0.0056 21.5 6.6 36 237-273 33-68 (136)
351 2crb_A Nuclear receptor bindin 28.0 1.4E+02 0.0048 20.3 4.9 27 400-426 17-43 (97)
352 2xig_A Ferric uptake regulatio 27.9 1.9E+02 0.0066 21.6 7.6 60 177-237 17-76 (150)
353 1bpo_A Protein (clathrin); cla 27.7 3.7E+02 0.013 24.9 10.2 16 127-142 369-384 (494)
354 1s6c_A KV4 potassium channel-i 27.6 2E+02 0.0069 21.8 11.9 43 204-248 140-182 (183)
355 1bd8_A P19INK4D CDK4/6 inhibit 27.3 1.8E+02 0.0063 21.2 6.8 15 269-283 10-24 (156)
356 3ltj_A Alpharep-4; protein eng 26.7 2.2E+02 0.0077 22.1 19.0 81 80-167 25-105 (201)
357 3dfg_A Xcrecx, regulatory prot 26.7 2.1E+02 0.0073 21.8 8.7 46 50-100 20-65 (162)
358 2wvi_A Mitotic checkpoint seri 26.5 2.2E+02 0.0075 21.9 9.8 68 116-186 60-130 (164)
359 3eyy_A Putative iron uptake re 26.4 1.7E+02 0.0057 21.8 6.1 22 238-260 33-54 (145)
360 1mzb_A Ferric uptake regulatio 26.2 1.5E+02 0.0051 21.8 5.7 60 73-134 8-68 (136)
361 3aji_A 26S proteasome non-ATPa 26.0 2.3E+02 0.0078 22.5 7.6 53 90-144 10-62 (231)
362 3eyy_A Putative iron uptake re 26.0 1.8E+02 0.0062 21.6 6.2 58 177-236 9-66 (145)
363 2o03_A Probable zinc uptake re 25.9 94 0.0032 22.7 4.6 25 445-469 17-41 (131)
364 2o03_A Probable zinc uptake re 24.8 1.1E+02 0.0039 22.2 4.8 33 67-99 29-61 (131)
365 2dzn_A Probable 26S proteasome 24.8 2.5E+02 0.0085 22.2 7.6 13 164-176 11-23 (228)
366 2w57_A Ferric uptake regulatio 24.8 1.9E+02 0.0066 21.6 6.2 60 213-274 8-68 (150)
367 3t8k_A Uncharacterized protein 24.7 2.3E+02 0.0079 22.0 7.0 128 126-254 42-182 (186)
368 2f6m_A Suppressor protein STP2 24.6 1.4E+02 0.0046 18.8 5.1 46 85-132 4-49 (65)
369 1bd8_A P19INK4D CDK4/6 inhibit 24.3 1.8E+02 0.0063 21.2 6.3 16 129-144 9-24 (156)
370 2w57_A Ferric uptake regulatio 24.0 2E+02 0.0067 21.6 6.2 58 251-310 10-68 (150)
371 3mwm_A ZUR, putative metal upt 23.4 1E+02 0.0034 22.9 4.3 24 446-469 21-44 (139)
372 2chq_A Replication factor C sm 23.3 3.4E+02 0.012 23.0 12.8 18 166-183 241-259 (319)
373 3kae_A CDC27, possible protein 23.3 2.7E+02 0.0092 21.7 7.8 27 259-285 115-141 (242)
374 3rjo_A Endoplasmic reticulum a 23.2 4.2E+02 0.014 24.0 17.9 93 87-182 201-297 (419)
375 2r9g_A AAA ATPase, central reg 22.7 3E+02 0.01 22.0 10.9 58 369-427 17-82 (204)
376 2ijq_A Hypothetical protein; s 22.6 2.6E+02 0.0089 21.4 7.8 60 155-215 36-103 (161)
377 4b4t_O 26S proteasome regulato 22.6 4.2E+02 0.014 23.8 10.1 56 335-390 83-154 (393)
378 3pvs_A Replication-associated 22.6 4.5E+02 0.015 24.1 13.6 43 190-232 255-300 (447)
379 3kae_A CDC27, possible protein 22.6 2.8E+02 0.0095 21.7 8.2 28 398-425 114-141 (242)
380 1oai_A Nuclear RNA export fact 22.5 79 0.0027 19.4 2.9 21 272-292 34-54 (59)
381 3cqc_A Nuclear pore complex pr 22.2 1.5E+02 0.0052 25.1 5.6 22 156-177 38-59 (270)
382 4b93_B Ankyrin repeat domain-c 22.1 76 0.0026 26.7 3.9 18 13-30 15-32 (269)
383 2xai_A ASB-9, ankyrin repeat a 22.0 3.3E+02 0.011 22.3 8.5 12 131-142 45-56 (261)
384 4g8k_A 2-5A-dependent ribonucl 21.4 3.9E+02 0.013 22.9 14.4 101 348-468 219-324 (337)
385 2yru_A Steroid receptor RNA ac 21.2 1.2E+02 0.0042 21.8 4.1 18 232-249 71-88 (118)
386 2rfa_A Transient receptor pote 21.2 3.1E+02 0.011 21.7 9.5 85 371-466 126-222 (232)
387 2yru_A Steroid receptor RNA ac 21.1 2.2E+02 0.0075 20.4 5.4 31 117-147 57-89 (118)
388 2fu4_A Ferric uptake regulatio 21.1 1.8E+02 0.006 18.8 6.2 13 204-216 34-46 (83)
389 3bge_A Predicted ATPase; struc 20.8 3.2E+02 0.011 21.7 9.1 39 375-413 19-57 (201)
390 3twr_A Tankyrase-2; ankyrin re 20.7 2.6E+02 0.0089 20.6 7.5 6 375-380 84-89 (165)
391 2jul_A Calsenilin; EF-hand, ca 20.5 3.6E+02 0.012 22.1 11.9 144 101-248 92-255 (256)
392 3sjs_A URE3-BP sequence specif 20.0 3.4E+02 0.012 21.7 8.8 72 136-213 117-191 (220)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-39 Score=318.22 Aligned_cols=416 Identities=10% Similarity=0.006 Sum_probs=357.0
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDL 128 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (485)
.++.++..+.+.|+..+ +..+++++.+ ..|+..++..++..+.+.|++++|..+|+.+... +.++..+..++.+
T Consensus 86 ~~~~~~~~~~~~g~~~~-A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKC-AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHTTCHHH-HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCchH-HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHH
Confidence 47889999999998888 7778888885 4578899999999999999999999999998654 4678889999999
Q ss_pred HHhhCCHHHHHHHHHhhhhcC-----------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------
Q 011472 129 IAKVQGIEQAASYFNCVPEKL-----------------KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGL-------- 183 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------- 183 (485)
|.+.|++++|.++|+++.... ++..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 999999999999999644321 2467899999999999999999999999865432
Q ss_pred --------------------------------------------------------------CCCcchHHHHHHHHHHcC
Q 011472 184 --------------------------------------------------------------VKKTIDYNSMMNVYYQTG 201 (485)
Q Consensus 184 --------------------------------------------------------------~p~~~~~~~l~~~~~~~~ 201 (485)
+++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 156677888888899999
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011472 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 281 (485)
++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++. +... .+..+++.++..|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLV-DRHP-EKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999876533 77788899999999999999999999987 5443 67888999999999999999999999
Q ss_pred HHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011472 282 RKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCH 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (485)
+++.+. .+.+..+|+.++.+|.+.|++++|+++|+.+....+.+..+|..++.+|.+.|++++|.++|+++.+....
T Consensus 397 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 473 (597)
T 2xpi_A 397 SKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY- 473 (597)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 999876 55566899999999999999999999999777777778889999999999999999999999999887544
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCc
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLR----GTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWK 435 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 435 (485)
+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+. .+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p 547 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL------ST 547 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SS
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC
Confidence 7788999999999999999999999999876 66787 789999999999999999999999999874 24
Q ss_pred cCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHH
Q 011472 436 PSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNI 482 (485)
Q Consensus 436 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~ 482 (485)
.+..+|..+..+|.+.|++++|.+.++++.+..|.++..+..+. .|.
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 47889999999999999999999999999999998888888887 654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=302.91 Aligned_cols=396 Identities=9% Similarity=-0.025 Sum_probs=311.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALL 159 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll 159 (485)
.++...|+.++..+.+.|++++|+.+|+++.... +++.++..++.+|.+.|++++|..+|+++....++..+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 4678899999999999999999999999999754 5777888889999999999999999999977678899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---------------CCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-----
Q 011472 160 NAYACAKSAEKAEIIMQQMRDR---------------GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID----- 219 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~----- 219 (485)
.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999953322 23346789999999999999999999999999875421
Q ss_pred -----------------------------------------------------------------CCcchHHHHHHHHHh
Q 011472 220 -----------------------------------------------------------------CDKYTFSILLSACAA 234 (485)
Q Consensus 220 -----------------------------------------------------------------p~~~~~~~ll~~~~~ 234 (485)
++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 344445555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHH
Q 011472 235 ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVL 314 (485)
Q Consensus 235 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 314 (485)
.|++++|.++|+++. +.+. .+..++..++.+|.+.|++++|.++++++... .+.+..+++.++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKIL-EIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHH-HHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHH-HcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHH
Confidence 566666666665555 3332 34445555555666666666666666665543 3455677888888888888888888
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011472 315 RVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT 394 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 394 (485)
++|+.+....+.+..+|..++.++.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+...
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888866555566677888888888888888888888888887644 3778888888899999999999999998887643
Q ss_pred CCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 395 EPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS--KECLAACLGYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
.+..+|+.++..|.+.|++++|.++|+++.+.. ...+..|+ ..+|..++.+|.+.|++++|.++++++.+.+|.++
T Consensus 473 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 473 -YDPLLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 368888999999999999999999999888731 01144666 78899999999999999999999999988888888
Q ss_pred HHHHHHH-HHHhcC
Q 011472 473 DLQDRLL-NNIRNG 485 (485)
Q Consensus 473 ~~~~~l~-~~~~~g 485 (485)
.+|..+. .|.+.|
T Consensus 551 ~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 551 NVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 8998888 888765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.8e-31 Score=246.46 Aligned_cols=380 Identities=11% Similarity=-0.033 Sum_probs=333.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCC
Q 011472 89 IIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKS 167 (485)
Q Consensus 89 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 167 (485)
+...+.+.|++++|.+.++.+.+.. |.++.....+...+...|++++|...++......| +..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 3566788999999999999998875 45666777778888999999999999999888776 47789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChHHHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD-KYTFSILLSACAAASDGEGIDKIVA 246 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 246 (485)
+++|+..|+++.+.... +..+|..+..++.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999876432 55679999999999999999999999999863 44 4567778888999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 011472 247 MMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKV 326 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (485)
++. ...+ .+..+|..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++......+.
T Consensus 160 ~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 160 KAI-ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHH-HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 998 5443 56889999999999999999999999999987 5566789999999999999999999999977666677
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011472 327 YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406 (485)
Q Consensus 327 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (485)
+..++..++..+...|++++|...++++.+..+. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 7889999999999999999999999999987543 56789999999999999999999999999864 346889999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 407 GYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 407 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
.+...|++++|.+.++++++ ..+.+..++..+...+.+.|++++|...++++.+..|..+..|..+. .|.+.|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALE------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTT------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999986 34456789999999999999999999999999999998999999988 777654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-28 Score=231.02 Aligned_cols=379 Identities=13% Similarity=0.021 Sum_probs=325.2
Q ss_pred hhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCH
Q 011472 56 MLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGI 135 (485)
Q Consensus 56 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (485)
.+...|+..+ +...++.+.+.. |.+...+..+...+...|++++|...++...+.. |.++..+..+...+.+.|++
T Consensus 8 ~~~~~g~~~~-A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEA-AERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 3445566666 555677776643 5567778888899999999999999999998875 56788899999999999999
Q ss_pred HHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHH
Q 011472 136 EQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEME 214 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 214 (485)
++|...|+++....|+ ..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999988776 567999999999999999999999999886533 45567888889999999999999999999
Q ss_pred HcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcc
Q 011472 215 EKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS 294 (485)
Q Consensus 215 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 294 (485)
+... -+..+|..+..++...|++++|...|+++. ..+. .+...+..+...+...|++++|+..|++.... .+.+.
T Consensus 163 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 163 ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 8632 246789999999999999999999999998 5554 56788999999999999999999999999887 55667
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 011472 295 RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC 374 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (485)
.++..+..+|...|++++|+..|+......+.+..+|..++..+.+.|++++|...++++.+..+ .+..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 89999999999999999999999987777777788999999999999999999999999998743 47788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCC
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERD 453 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 453 (485)
+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|+++++ ..| +...|..+...+.+.|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999998853 23478899999999999999999999999996 344 56777777777666553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=247.69 Aligned_cols=206 Identities=11% Similarity=0.069 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC---------
Q 011472 240 GIDKIVAMMEADRGVVLDW-TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN--------- 309 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 309 (485)
.+..+.+++. +.+....+ ..++.+|++|++.|++++|+++|++|.+.| ..|+..+|+.||.+|++.+.
T Consensus 8 ~~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4555666776 66665544 457888999999999999999999999887 67778999999999987664
Q ss_pred HHHHHHHHH-HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 011472 310 KDDVLRVWK-RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388 (485)
Q Consensus 310 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 388 (485)
.++|.++|+ |...++.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 577888888 5677888899999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC
Q 011472 389 AQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER 452 (485)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 452 (485)
|.+.|+.||..||+.||.+|++.|+.++|.+++++|.+. +..|+..||+.++..|...+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-----g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-----VRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-----CCCcCHHHHHHHHHHHhcCc
Confidence 998889999999999999999999999999999999886 88899999988888887643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.4e-30 Score=244.22 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhh
Q 011472 67 MVPLLDQWVEEGRPLDME-QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
...+.+++.+.+..+++. .++.+|+.|++.|++++|+++|++|.+.| +.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~----------------------------- 58 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQ----------------------------- 58 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CC-----------------------------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC-----------------------------
Confidence 444445555555554443 36666777777777777777777777666 44
Q ss_pred hhcCCChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 146 PEKLKLPSVYIALLNAYACAKS---------AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 146 ~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
||..+||+||.+|++.+. +++|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 59 ----pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 59 ----LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp ----CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ----CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 455555555555544332 4555666666666666666666666666666666666666666666666
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchh
Q 011472 217 GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRA 296 (485)
Q Consensus 217 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 296 (485)
|+.||..||+++|.+|++.|++++|.++|++|. +.|+.||..+|++||.+|++.|++++|.++|++|.+.+ ..|+..|
T Consensus 135 g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T 212 (501)
T 4g26_A 135 GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKST 212 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHH
T ss_pred CCCCccceehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHH
Confidence 666666666666666666666666666666665 55566666666666666666666666666666665554 3444455
Q ss_pred HHHHHHHHHh
Q 011472 297 YDFVITQYAA 306 (485)
Q Consensus 297 ~~~l~~~~~~ 306 (485)
|+.++..|+.
T Consensus 213 ~~~l~~~F~s 222 (501)
T 4g26_A 213 FDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 6655555544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-26 Score=221.38 Aligned_cols=380 Identities=12% Similarity=-0.013 Sum_probs=285.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHH
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYA 163 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~ 163 (485)
.+......+.+.|++++|+..|+.+.+.. +++..+..+..++.+.|++++|...|+++.+..|+ ..+|..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544 34555555555555555555555555555555443 345555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-----------------------------------------------------------
Q 011472 164 CAKSAEKAEIIMQQMRDRGLV----------------------------------------------------------- 184 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~----------------------------------------------------------- 184 (485)
+.|++++|+..|+++...+..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 555555555555555443311
Q ss_pred -------------------CCcchHHHHHHHHHH---cCChhhHHHHHHHHHH-----cCCCC--------CcchHHHHH
Q 011472 185 -------------------KKTIDYNSMMNVYYQ---TGNYKKLDSLMHEMEE-----KGIDC--------DKYTFSILL 229 (485)
Q Consensus 185 -------------------p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~ll 229 (485)
.+...+......+.. .|++++|...|+++.+ ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 012233333343443 7999999999999988 32222 245677888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN 309 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (485)
.++...|++++|...|+++. +.... ...+..+..++...|++++|...++++... .+.+..++..+...+...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l-~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAI-ELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHH-hhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999998 54543 888899999999999999999999999887 55566899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 011472 310 KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389 (485)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 389 (485)
+++|...++......+.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|...++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999877777778889999999999999999999999999987443 6778899999999999999999999999
Q ss_pred HHcCCC-Cc----HHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011472 390 QLRGTE-PN----VRTWYLMATGYLQ---NNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFI 461 (485)
Q Consensus 390 ~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (485)
.+.... ++ ...+..+...+.. .|++++|.+.++++++. .+.+..++..+...+.+.|++++|...+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 864321 11 3388999999999 99999999999999974 3446788889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHH
Q 011472 462 KLLTGKEIISADLQDRLL 479 (485)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~ 479 (485)
+++.+..|.++..+..+-
T Consensus 473 ~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 473 EESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCSSHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHH
Confidence 999999887777665443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.3e-24 Score=205.42 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIAL 158 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l 158 (485)
+.+...+..+...+.+.|++++|+.+|+.+.+.. +.++..+..+..++...|++++|...|+++.+..|+ ..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5677889999999999999999999999999864 457888888899999999999999999999988765 6789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCc---chHHHH------------HHHHHHcCChhhHHHHHHHHHHcCCCCCcc
Q 011472 159 LNAYACAKSAEKAEIIMQQMRDRGLVKKT---IDYNSM------------MNVYYQTGNYKKLDSLMHEMEEKGIDCDKY 223 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 223 (485)
..+|.+.|++++|...|+++.+.... +. ..+..+ ...+...|++++|...|+++.+... .+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 99999999999999999999986532 33 555555 4448899999999999999988633 3677
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHH---
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFV--- 300 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--- 300 (485)
++..+..+|.+.|++++|...|+++. +... .+..++..+..+|...|++++|+..|+++... .+.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAAS-KLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHH-HHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 88899999999999999999999998 5443 67889999999999999999999999999876 44444555555
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHhhcCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 011472 301 ---------ITQYAACGNKDDVLRVWKRYKQNLKVY----NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPN 367 (485)
Q Consensus 301 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (485)
...+...|++++|...|+.+....+.+ ...+..++..+.+.|++++|...++++.+..+ .+...|.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~ 333 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 889999999999999999655443333 34788889999999999999999999987643 2678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHH------------HHhccC-----CHHHHHHHHHHHHHhhc
Q 011472 368 HLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMAT------------GYLQNN-----QSEKGVEAMKKALVLLE 429 (485)
Q Consensus 368 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~------------~~~~~g-----~~~~A~~~~~~~~~~~~ 429 (485)
.+..+|...|++++|...++++.+. .|+ ...+..+.. .|...| +.+++.+.|++....
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-- 409 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-- 409 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--
Confidence 9999999999999999999999984 455 555555552 233334 566778888764331
Q ss_pred cCCCCccCH-------HHHHHHHHHHHhcCCHhHH
Q 011472 430 AGTRWKPSK-------ECLAACLGYYKKERDIEGA 457 (485)
Q Consensus 430 ~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a 457 (485)
..+...|+. ..+..+..+|...||.+..
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 011111221 2566666666666665543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2e-24 Score=206.92 Aligned_cols=312 Identities=11% Similarity=0.009 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
..+..+...+.+.|++++|+.+|+++.+... .+..+|..+..++...|++++|...|+++.+.+.. +..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 3444444444444445555544444443321 13444444444444445555555555444443211 233444444444
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHhhccCCcchhH
Q 011472 233 AAASDGEGIDKIVAMMEADRGVVLDW---TVYATA------------ASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAY 297 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 297 (485)
.+.|++++|.+.|+++. +... .+. ..+..+ ...+...|++++|+..|+++... .+.+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVL-KSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHH-hcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 45555555555555444 2211 111 222222 23355555555555555555544 33344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH--------
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHL-------- 369 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 369 (485)
..+..+|...|++++|...|+.+....+.+..++..++..+...|++++|...++++.+..+. +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 555555555555555555555444444444555555555555566666666665555543221 22223222
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHH
Q 011472 370 ----IDAYCRRGLLHKAETLIYKAQLRGTEPN-----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKEC 440 (485)
Q Consensus 370 ----~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 440 (485)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|++.++++++. .+.+...
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~ 331 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHH
Confidence 556666666666666666666532 33 235556666666666666666666666652 2234566
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 441 LAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
|..+..+|...|++++|...++++.+..|.++..+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 666666666666666666666666666665555555444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.2e-24 Score=207.64 Aligned_cols=359 Identities=11% Similarity=-0.016 Sum_probs=298.4
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Q 011472 120 ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ 199 (485)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 199 (485)
..+......+.+.|++++|...|+++....|+..+|..+..+|.+.|++++|+..|+++.+.+.. +..+|..+..++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHH
Confidence 44555678889999999999999999999999999999999999999999999999999987543 66789999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCC----------------------------------------------------------
Q 011472 200 TGNYKKLDSLMHEMEEKGIDCD---------------------------------------------------------- 221 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~---------------------------------------------------------- 221 (485)
.|++++|...|+++.+.+...+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 9999999999999987642111
Q ss_pred --------------------cchHHHHHHHHH---hcCChHHHHHHHHHHHhc-----CC-C-------CCCHHHHHHHH
Q 011472 222 --------------------KYTFSILLSACA---AASDGEGIDKIVAMMEAD-----RG-V-------VLDWTVYATAA 265 (485)
Q Consensus 222 --------------------~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~-----~~-~-------~~~~~~~~~l~ 265 (485)
...+......+. +.|++++|..+|+++. + .. . +.+..++..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA-RLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH-HHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH-HHhhhhhccCccccccChHHHHHHHHHH
Confidence 111222222233 3799999999999998 4 21 1 23356778899
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHH
Q 011472 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGME 345 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 345 (485)
..+...|++++|...|+++.... +. ..++..+..++...|++++|...++......+.+..++..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998873 33 6899999999999999999999999877777778889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 346 SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
+|...++++.+..+. +...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999987554 677888999999999999999999999988642 257888999999999999999999999998
Q ss_pred HhhccCCCCccCHHHHHHHHHHHHh---cCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 426 VLLEAGTRWKPSKECLAACLGYYKK---ERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
+.........-....+..+...+.. .|++++|...++++.+..+.++..+..+. .|.+.|
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 7411000000013488899999999 99999999999999999888888988888 887765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.7e-23 Score=203.71 Aligned_cols=408 Identities=10% Similarity=-0.011 Sum_probs=299.2
Q ss_pred CchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 011472 48 SSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLD 127 (485)
Q Consensus 48 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (485)
..+..+...+.+.|+... +...+++..+.. |.++..+..+...+.+.|++++|++.|+.+.+.. |.++..+..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~-A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNE-AIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHH-HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 346677777778888777 444667777654 5577788888888888888888888888888765 456677777778
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCcc-------------
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRG------LVKKTI------------- 188 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~------------- 188 (485)
++...|++++|...|+ .....|+. .+..+..+...+...+|...++++.... ..|+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 8888888888888886 33332332 2222334445555667777777765431 111111
Q ss_pred -----------------hHHHHHHHHH--------HcCChhhHHHHHHHHHHcCCCCCc--------chHHHHHHHHHhc
Q 011472 189 -----------------DYNSMMNVYY--------QTGNYKKLDSLMHEMEEKGIDCDK--------YTFSILLSACAAA 235 (485)
Q Consensus 189 -----------------~~~~l~~~~~--------~~~~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~ 235 (485)
....+...+. ..+++++|..+|+++.+. .|+. .++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 1111111111 124788999999999875 3332 2466667788899
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHH
Q 011472 236 SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
|++++|...|+++. +.. |+...+..+...+...|++++|.+.|+++... .+.+..++..+...+...|++++|..
T Consensus 257 ~~~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 257 NNLLDAQVLLQESI-NLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999998 443 55888889999999999999999999999887 45566889999999999999999999
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011472 316 VWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 395 (485)
.++......+.+...+..+...+...|++++|...++++.+..+. +...+..+...|...|++++|...|+++.+....
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 999777666777788999999999999999999999999987543 6678899999999999999999999998764311
Q ss_pred -----CcHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011472 396 -----PNVRTWYLMATGYLQN----------NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYF 460 (485)
Q Consensus 396 -----p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 460 (485)
.....+......+... |++++|...|+++++. .+.+...+..+...+.+.|++++|.+.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL------DPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 1122244455667777 9999999999999973 344678899999999999999999999
Q ss_pred HHHHhcCCCCCHHHHH
Q 011472 461 IKLLTGKEIISADLQD 476 (485)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (485)
|++..+..+..+....
T Consensus 485 ~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHC--CHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999998876655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.6e-21 Score=191.07 Aligned_cols=367 Identities=12% Similarity=0.022 Sum_probs=282.3
Q ss_pred ccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHH
Q 011472 45 RKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI 124 (485)
Q Consensus 45 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (485)
.....+..+...+...|+..+ +...+++..+.. |.+..++..+...+...|++++|+..|+.+ .. .|.....
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~-----~~~~~~~ 128 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEK-VIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL-----NGDFDGA 128 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc-----CCCCChH
Confidence 334447778888888888888 677888888765 567889999999999999999999999743 32 2222333
Q ss_pred HHHHHHhhCCHHHHHHHHHhhhhcCC--------ChH------------------------------HHHHHHHHHHh--
Q 011472 125 RLDLIAKVQGIEQAASYFNCVPEKLK--------LPS------------------------------VYIALLNAYAC-- 164 (485)
Q Consensus 125 ~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~------------------------------~~~~ll~~~~~-- 164 (485)
.+..+...+....|...++++....| +.. ....+...+..
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 34455556666778888877755421 111 22222222222
Q ss_pred ------cCCHHHHHHHHHHHHhCCCCCC-------cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 011472 165 ------AKSAEKAEIIMQQMRDRGLVKK-------TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231 (485)
Q Consensus 165 ------~~~~~~a~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 231 (485)
.|++++|+.+|+++.+.... + ..+|..+...+...|++++|...|++..+. .|+...+..+...
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 25799999999999876433 2 235777778889999999999999999986 4557788889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKD 311 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (485)
+...|++++|...|+++. +... .+..++..+...+...|++++|.+.|+++... .+.+..++..+..++...|+++
T Consensus 286 ~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAV-DLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp TCCSSCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998 5444 57888999999999999999999999999987 4556689999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHHc----------
Q 011472 312 DVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI-----RIPNHLIDAYCRR---------- 376 (485)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~---------- 376 (485)
+|...++......+.+...+..+...+...|++++|...++++.+....... ..+......+...
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 9999999777777777889999999999999999999999999875432111 1133445677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 377 GLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 377 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
|++++|...|++..+... .+...+..+...|...|++++|.+.|+++++.
T Consensus 442 ~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999998642 25788999999999999999999999999975
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.3e-21 Score=179.50 Aligned_cols=324 Identities=10% Similarity=-0.000 Sum_probs=201.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011472 120 ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYY 198 (485)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 198 (485)
..+..+...+...|++++|...|+++....|+ ..++..+...+...|++++|+..|+++.+.... +...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 33444455555666666666666665555443 445555556666666666666666665554322 3445555555555
Q ss_pred HcCChhhHHHHHHHHHHcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 011472 199 QTGNYKKLDSLMHEMEEKGIDC----DKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274 (485)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 274 (485)
..|++++|...|+++.+. .| +...+..+..... ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCH
Confidence 666666666666655543 22 1112222210000 00111224566666777
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 354 (485)
++|++.++++... .+.+..++..+..++...|++++|...++......+.+..++..+...+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777776665 34445666666777777777777777777655555556666667777777777777777777776
Q ss_pred HhcCCCCCcccHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-H----HHHHHHHHHHhccCCHHHH
Q 011472 355 ESRNLCHDIRIPN------------HLIDAYCRRGLLHKAETLIYKAQLRGTEPN-V----RTWYLMATGYLQNNQSEKG 417 (485)
Q Consensus 355 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~A 417 (485)
.+..+. +...+. .+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 654322 222222 23566888889999999998888754 33 2 2344567788889999999
Q ss_pred HHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HH
Q 011472 418 VEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NN 481 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~ 481 (485)
++.++++++. .+.+..++..+...+.+.|++++|...|+++.+..|.++..+..+. ++
T Consensus 292 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 292 IRICSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999988873 2336778888888888999999999999999988888777777666 44
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.9e-21 Score=175.55 Aligned_cols=303 Identities=11% Similarity=0.013 Sum_probs=217.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHH
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLN 160 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~ 160 (485)
++..+..+...+...|++++|+..|+.+.+.. |.++..+..+..++...|++++|...|+++....| +..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45678888999999999999999999999875 46788888889999999999999999999998877 4778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCcchHHHH------------HHHHHHcCChhhHHHHHHHHHHcCCCCCcchHH
Q 011472 161 AYACAKSAEKAEIIMQQMRDRGLV--KKTIDYNSM------------MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFS 226 (485)
Q Consensus 161 ~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (485)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999886430 144445444 4677788888888888888877532 3556777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHH-------
Q 011472 227 ILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDF------- 299 (485)
Q Consensus 227 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------- 299 (485)
.+..++...|++++|...++++. +... .+..++..+...+...|++++|...|++..+. .+.+...+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAAS-KLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-TTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHH
Confidence 77788888888888888888887 5433 56777788888888888888888888887766 3333233322
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHhhcCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 011472 300 -----VITQYAACGNKDDVLRVWKRYKQNLKVYN----RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLI 370 (485)
Q Consensus 300 -----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 370 (485)
+...+.+.|++++|...++......+.+. ..+..+...+...|++++|...++++.+..+. +..++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 313 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 24456666666666666664433333222 12334555666666666666666666654222 445556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 011472 371 DAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
..|...|++++|...|++..+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666666666653
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.1e-20 Score=172.96 Aligned_cols=282 Identities=13% Similarity=0.021 Sum_probs=137.6
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (485)
..+..++..+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++. +... .+...+..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLV-DLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHHHHHHHH
Confidence 3344444444444444444444444443321 122233334444444444444444444444 2221 233344444444
Q ss_pred HHhcC-ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHH
Q 011472 268 YVKAG-LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMES 346 (485)
Q Consensus 268 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 346 (485)
+...| ++++|.+.|+++... .+.+..+|..+...+...|++++|...++......+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 44444 444444444444433 222234444444444444444444444443333333334444445555555555555
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCcHHHHHHHHHHHhccCCHHHHH
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG--------TEPNVRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 418 (485)
|...++++.+..+. +...+..+...|...|++++|...+++..+.. ...+..++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555544222 34445555555555555555555555554421 0122455666666666666666666
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HH
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NN 481 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~ 481 (485)
+.++++++. .+.+...+..+...+.+.|++++|.+.++++.+..|.++..+..+. ++
T Consensus 257 ~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVL------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHH------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhh------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 666666652 1224455666666666666666666666666666666666655555 44
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.8e-20 Score=168.59 Aligned_cols=272 Identities=6% Similarity=-0.015 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHH
Q 011472 79 RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIA 157 (485)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 157 (485)
.+.+...+..+...+...|++++|+++|+.+.+.. +.++..+...+..+...|++++|..+++++....|+ ..+|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 45566777788888888888888888888888765 355666666777778888888888888888777654 667778
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 158 LLNAYACAK-SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 158 ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
+...+...| ++++|...|++..+.... +...|..+...+...|++++|.+.|+++.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 888888888 888888888888776533 5667778888888888888888888888775322 4556666777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcc-------CCcchhHHHHHHHHHhcCC
Q 011472 237 DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMH-------NKFSRAYDFVITQYAACGN 309 (485)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 309 (485)
++++|...++++. +... .+...+..+...+...|++++|...++++...... +....++..+..++...|+
T Consensus 174 ~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQAL-SIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHH-TTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888877 4333 55677777777777888888888877777665211 2223445555555555555
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 310 KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
+++|...++......+.+...+..+...+...|++++|...++++.+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 55555555543333333444444444444444444444444444443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=7.6e-18 Score=162.80 Aligned_cols=362 Identities=15% Similarity=0.073 Sum_probs=301.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh----hCCHHHHHHH
Q 011472 70 LLDQWVEEGRPLDMEQLRIIIKKFRL----YKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK----VQGIEQAASY 141 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~ 141 (485)
.+....+. -++..+..+...|.. .+++++|+..|+...+.+ ++.....+...|.. .+++++|...
T Consensus 29 ~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 29 QLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44444443 477888888888888 899999999999999876 57778888888888 8999999999
Q ss_pred HHhhhhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHH
Q 011472 142 FNCVPEKLKLPSVYIALLNAYAC----AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEM 213 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 213 (485)
|++..+.+ ++..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.++|++.
T Consensus 102 ~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 102 YKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99988764 67778888888888 789999999999998876 66788888888887 78999999999999
Q ss_pred HHcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 011472 214 EEKGIDCDKYTFSILLSACAA----ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK----AGLSDKALAVLRKSE 285 (485)
Q Consensus 214 ~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 285 (485)
.+.| +...+..+...|.. .++.++|.+.|++.. +.+ +...+..+...|.. .+++++|.++|++..
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8864 56677888888887 899999999999998 544 45677778888886 789999999999987
Q ss_pred HhhccCCcchhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Q 011472 286 VLMMHNKFSRAYDFVITQYAA----CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF-----DGMESAEKIFEEWES 356 (485)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~ 356 (485)
+.+ +...+..+...|.. .+++++|+..|+..... .+...+..+...+... ++.++|...+++..+
T Consensus 251 ~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 653 34677888888888 89999999999965543 2445677788888877 899999999999988
Q ss_pred cCCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhc
Q 011472 357 RNLCHDIRIPNHLIDAYCRRG---LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ----NNQSEKGVEAMKKALVLLE 429 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~ 429 (485)
.| +...+..+...|...| +.++|...|++..+.| ++..+..+...|.. .+++++|.++|+++.+.
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-- 396 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-- 396 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--
Confidence 75 4456777888888766 7899999999999863 67888888888888 89999999999999983
Q ss_pred cCCCCccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHhcCCC
Q 011472 430 AGTRWKPSKECLAACLGYYKK----ERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 430 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 469 (485)
+ +...+..+...|.+ .++.++|...|++..+.++
T Consensus 397 ---~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 ---G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3 56788888888888 8999999999999999884
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.5e-20 Score=172.34 Aligned_cols=292 Identities=9% Similarity=-0.091 Sum_probs=200.9
Q ss_pred cCCHHHHHH-HHHHHHhCCC---CCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHH
Q 011472 165 AKSAEKAEI-IMQQMRDRGL---VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG 240 (485)
Q Consensus 165 ~~~~~~a~~-~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 240 (485)
.|++++|+. .|++...... ..+...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6655443321 11345566667777777777777777777766532 244566666677777777777
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHH----------------HHHHHH
Q 011472 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYD----------------FVITQY 304 (485)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~ 304 (485)
|...|+++. +... .+..++..+..+|...|++++|.+.++++....+..+ ..+. .+.. +
T Consensus 117 A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~ 191 (368)
T 1fch_A 117 AISALRRCL-ELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGAGLGPSKRILGS-L 191 (368)
T ss_dssp HHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG--GGCC---------------CTTHH-H
T ss_pred HHHHHHHHH-hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHhhhhcccHHHHHHHH-H
Confidence 777777776 4333 4566677777777777777777777777766532222 2221 2333 3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKV--YNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKA 382 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 382 (485)
...|++++|...++......+. +..++..+...+...|++++|...++++.+..+. +..++..+...|...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 3888999999999866554444 6778888999999999999999999998876433 567888999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCC-----ccCHHHHHHHHHHHHhcCCHhHH
Q 011472 383 ETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRW-----KPSKECLAACLGYYKKERDIEGA 457 (485)
Q Consensus 383 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a 457 (485)
...|+++.+... .+...+..+...|...|++++|.+.|+++++......+. .....+|..+..++...|+.++|
T Consensus 271 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999988542 257888999999999999999999999998741111000 11268899999999999999999
Q ss_pred HHHHHHH
Q 011472 458 DYFIKLL 464 (485)
Q Consensus 458 ~~~~~~~ 464 (485)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9887643
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.6e-18 Score=166.02 Aligned_cols=132 Identities=8% Similarity=0.033 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLN 160 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~ 160 (485)
-+...|..++.. .+.|++++|..+|+.+.+.. |.++..+...+..+.+.|++++|..+|+++....|+...|...+.
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 344555555552 44555555555555555542 344445555555555555555555555555555555444444443
Q ss_pred HH-HhcCCHHHHHH----HHHHHHh-CCCCC-CcchHHHHHHHHHH---------cCChhhHHHHHHHHHH
Q 011472 161 AY-ACAKSAEKAEI----IMQQMRD-RGLVK-KTIDYNSMMNVYYQ---------TGNYKKLDSLMHEMEE 215 (485)
Q Consensus 161 ~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~ 215 (485)
.. ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 22 22344444333 4444332 13222 23344444443332 3455555555555554
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=8.6e-20 Score=169.72 Aligned_cols=281 Identities=9% Similarity=-0.089 Sum_probs=145.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc
Q 011472 122 VAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200 (485)
Q Consensus 122 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 200 (485)
+..+...+.+.|++++|...|+++....|+ ..++..+..++...|++++|+..|+++.+.... +..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 444455555555555555555555554432 444555555555555555555555555544322 444555555555555
Q ss_pred CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011472 201 GNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAV 280 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 280 (485)
|++++|...|+++.+.... +...+..+... . ... . + ...+..+...+ ..|++++|...
T Consensus 146 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~~~---~--~-~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------GGA---G--L-GPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------------------CTTHHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------hhh---c--c-cHHHHHHHHHh-hcccHHHHHHH
Confidence 5555555555555543211 11111100000 0 000 0 0 00000122222 55666666666
Q ss_pred HHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011472 281 LRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLC 360 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (485)
|+++....+..++..++..+...|...|++++|+..++......+.+..++..++..+...|++++|...++++.+..+
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~- 282 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP- 282 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 6666554222113455666666666666666666666644444444555666666666666666666666666665432
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------cHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 361 HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP----------NVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.+...+..+...|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++.++
T Consensus 283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 244556666666666677777776666665432111 146677777777777777777766665444
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.8e-20 Score=172.84 Aligned_cols=233 Identities=7% Similarity=-0.122 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 233 (485)
.+..+...+.+.|++++|+..|+++.+.... +..+|..+...+...|++++|...|+++.+... .+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555555555555443322 344455555555555555555555555544321 12334444445555
Q ss_pred hcCChHHHHHHHHHHHhcCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 234 AASDGEGIDKIVAMMEADRGVV---------LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
..|++++|...|+++. +.... .....+..+...+...|++++|++.|+++....+...+..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHH-HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH-HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555444 21110 0011122234444444555555555555444421111333444444444
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAET 384 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 384 (485)
...|++++|+..|+......+.+..++..+..++...|++++|...++++.+..+. +..++..+...|.+.|++++|..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 44444444444444333333333334444444444444444444444444433211 23333344444444444444444
Q ss_pred HHHHHH
Q 011472 385 LIYKAQ 390 (485)
Q Consensus 385 ~~~~m~ 390 (485)
.|+++.
T Consensus 303 ~~~~al 308 (365)
T 4eqf_A 303 NFLTAL 308 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=5.8e-19 Score=163.99 Aligned_cols=271 Identities=10% Similarity=-0.082 Sum_probs=220.3
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAA 265 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 265 (485)
+...|..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++|...|+++. +... .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHH
Confidence 566799999999999999999999999998743 367789999999999999999999999998 5443 5688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccCCcchhH----------HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CcccHHH
Q 011472 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAY----------DFVITQYAACGNKDDVLRVWKRYKQNLKV--YNRGYIC 333 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 333 (485)
.+|...|++++|+..|+++.... +.+...+ ..+...+...|++++|...++......+. +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999998863 2222333 34588999999999999999966555554 7788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
+...+...|++++|...++++.+..+. +..+|..+...|.+.|++++|...|+++.+... .+..+|..+...|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 999999999999999999999987543 678899999999999999999999999998642 248889999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCC------ccCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011472 414 SEKGVEAMKKALVLLEAGTRW------KPSKECLAACLGYYKKERDIEGADYFIKL 463 (485)
Q Consensus 414 ~~~A~~~~~~~~~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (485)
+++|.+.|+++++......+. ..+...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999852111110 01357889999999999999998887665
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-17 Score=161.09 Aligned_cols=373 Identities=12% Similarity=-0.023 Sum_probs=246.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC--
Q 011472 79 RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK----S---NFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL-- 149 (485)
Q Consensus 79 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 149 (485)
.+.....|+.+...+...|++++|++.|++..+. . ..+....++..+..+|...|++++|...+++.....
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445677999999999999999999999987652 1 012233456667888999999999999999875531
Q ss_pred ------C-ChHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCcchHHHHHHH---HHHcCChhhHHHHHHHHHHcC
Q 011472 150 ------K-LPSVYIALLNAYACA--KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNV---YYQTGNYKKLDSLMHEMEEKG 217 (485)
Q Consensus 150 ------~-~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~g 217 (485)
+ ...++..+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 245677666666554 5799999999999876533 44555555544 345678899999999988753
Q ss_pred CCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc
Q 011472 218 IDCDKYTFSILLSACAA----ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF 293 (485)
Q Consensus 218 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 293 (485)
.. +..++..+...+.. .|++++|.+.+++.. .... .+..++..+...|...|++++|+..+++..+. .|.+
T Consensus 206 p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al-~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 280 (472)
T 4g1t_A 206 PD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-EKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNN 280 (472)
T ss_dssp SS-CHHHHHHHHHHHHHCC------CHHHHHHHHHH-HHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred Cc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCh
Confidence 22 34455555545544 467789999999988 5444 67788889999999999999999999999887 5556
Q ss_pred chhHHHHHHHHHhc-------------------CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 294 SRAYDFVITQYAAC-------------------GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 294 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 354 (485)
..++..+..+|... +..+.|...++......+.+..++..+...+...|++++|...|++.
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 67787777766432 23456677777666666677778888888888888888888888888
Q ss_pred HhcCCCCCcc--cHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccC
Q 011472 355 ESRNLCHDIR--IPNHLID-AYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAG 431 (485)
Q Consensus 355 ~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 431 (485)
.+....+... .+..+.. .+...|+.++|...|++..+. .|+....... ...+.+++++.++.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~---- 425 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSK---- 425 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHH----
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHh----
Confidence 8764433221 1222222 234578888888888888873 4554332222 23445566666652
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 432 TRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 432 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
-+.+..+|..+...+...|++++|++.|++..+.++..|..
T Consensus 426 --~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 426 --NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp --CC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 34467889999999999999999999999999988754443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.7e-18 Score=156.63 Aligned_cols=272 Identities=11% Similarity=-0.052 Sum_probs=180.1
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (485)
..+..+...+...|++++|..+|+++.+... .+..++..+..++...|++++|...++++. +... .+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCc-CCHHHHHHHHHH
Confidence 3444555555555555555555555554422 134445555555556666666666666555 3222 345555556666
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhcCCCCcccHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFV--------------IT-QYAACGNKDDVLRVWKRYKQNLKVYNRGYI 332 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (485)
|...|++++|.+.++++... .+.+...+..+ .. .+...|++++|...++......+.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 66666666666666666554 22222333332 22 366677888888888866665666777788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 011472 333 CVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN 412 (485)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 412 (485)
.+...+...|++++|...++++.+..+. +..++..+...|...|++++|...++++.+... .+..++..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 8888888888888888888888876433 567788889999999999999999999887542 25778889999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcc------CHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 413 QSEKGVEAMKKALVLLEAGTRWKP------SKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
++++|.+.++++++......+... +...+..+..++.+.|++++|..++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999874100000000 367888899999999999999998875543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.3e-15 Score=147.02 Aligned_cols=345 Identities=11% Similarity=0.002 Sum_probs=284.5
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHh----hCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh----cCCHHHHHH
Q 011472 102 ALQISMWMTKKSNFVLTPADVAIRLDLIAK----VQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC----AKSAEKAEI 173 (485)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 173 (485)
+++.++...+.+ ++.....+...+.. .+++++|...|++..+. .+...+..|...|.. .+++++|+.
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 455666666655 67777777777777 89999999999998876 467788889999998 899999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChHHHHHHH
Q 011472 174 IMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAA----ASDGEGIDKIV 245 (485)
Q Consensus 174 ~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~ 245 (485)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 66788889999988 789999999999998875 45677778888877 78999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHh----cCCHHHHHHHH
Q 011472 246 AMMEADRGVVLDWTVYATAASGYVK----AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAA----CGNKDDVLRVW 317 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 317 (485)
++.. +.+ +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++|..+|
T Consensus 175 ~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 175 SKAA-EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHH-HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9998 544 67788889999988 899999999999987753 34688888888887 88999999999
Q ss_pred HHHhhcCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHc-----CCHHHHHHHHHH
Q 011472 318 KRYKQNLKVYNRGYICVISSLLK----FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRR-----GLLHKAETLIYK 388 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~ 388 (485)
+..... .+...+..+...+.. .++.++|...|++..+.| +...+..+...|... +++++|...|++
T Consensus 247 ~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 247 SQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 965543 344567777778877 899999999999998764 445777788888887 899999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 011472 389 AQLRGTEPNVRTWYLMATGYLQNN---QSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK----ERDIEGADYFI 461 (485)
Q Consensus 389 m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 461 (485)
..+.| +...+..+...|...| ++++|+++|+++.+. .+...+..+...|.. .+++++|.+.|
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99864 5667777888887766 789999999999982 467788888888888 89999999999
Q ss_pred HHHhcCCCCCHHHHHHHH-HHHh
Q 011472 462 KLLTGKEIISADLQDRLL-NNIR 483 (485)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~-~~~~ 483 (485)
++..+.+ ++..+..|. .|.+
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHhCC--CHHHHHHHHHHHHc
Confidence 9999876 466666676 6553
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=3.1e-18 Score=156.27 Aligned_cols=224 Identities=14% Similarity=-0.006 Sum_probs=100.3
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK 204 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 204 (485)
...+...|++++|..+|+++....| +..++..+..++...|++++|...|+++.+.... +..++..+...+...|+++
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444444333 2344444555555555555555555555443221 3444555555555555555
Q ss_pred hHHHHHHHHHHcCCCCCcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 011472 205 KLDSLMHEMEEKGIDCDKYTFSIL--------------LS-ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYV 269 (485)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (485)
+|.+.++++.+.... +...+..+ .. .+...|++++|...++++. +... .+...+..+...|.
T Consensus 107 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 107 AALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL-EMNP-NDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH-hhCC-CCHHHHHHHHHHHH
Confidence 555555555543211 11111111 11 2444555555555555555 3222 34455555555555
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHH
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEK 349 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 349 (485)
..|++++|.+.++++... .+.+..++..+...+...|++++|...++......+.+..++..+...+...|++++|.+
T Consensus 184 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 555555555555555544 223334444444444444555444444443333333333334444444444444444444
Q ss_pred HHHHHH
Q 011472 350 IFEEWE 355 (485)
Q Consensus 350 ~~~~~~ 355 (485)
.++++.
T Consensus 262 ~~~~a~ 267 (327)
T 3cv0_A 262 QLVRAI 267 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.1e-16 Score=156.37 Aligned_cols=402 Identities=10% Similarity=-0.014 Sum_probs=287.8
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDL 128 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (485)
.|..++.. ...|+... +..+++++.+. .|-+...|..++..+.+.|++++|..+|+++.+.. |+...+...+..
T Consensus 15 ~w~~l~~~-~~~~~~~~-a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~ 88 (530)
T 2ooe_A 15 AWSILIRE-AQNQPIDK-ARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHHHHH-HHSSCHHH-HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHH
T ss_pred HHHHHHHH-HHhCCHHH-HHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHH
Confidence 34556653 45566555 77788888864 46788889999999999999999999999999875 455555544443
Q ss_pred H-HhhCCHHHHHH----HHHhhhhc-C---CChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCc---
Q 011472 129 I-AKVQGIEQAAS----YFNCVPEK-L---KLPSVYIALLNAYAC---------AKSAEKAEIIMQQMRDRGLVKKT--- 187 (485)
Q Consensus 129 ~-~~~~~~~~A~~----~~~~~~~~-~---~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~--- 187 (485)
. ...|+.+.|.+ +|++.... + ++...|...+....+ .|+++.|..+|++..+. |+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~ 165 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIE 165 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHH
Confidence 3 34566666554 77776543 2 356788888876654 68999999999999883 332
Q ss_pred chHHHHHHHH-------------HHcCChhhHHHHHHHHH------HcC---CCCCc--------chHHHHHHHHHhc--
Q 011472 188 IDYNSMMNVY-------------YQTGNYKKLDSLMHEME------EKG---IDCDK--------YTFSILLSACAAA-- 235 (485)
Q Consensus 188 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~~--------~~~~~ll~~~~~~-- 235 (485)
..|....... .+.++++.|..++.+.. +.. ++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3333322211 12345677777776632 111 24432 2444444332221
Q ss_pred --CCh----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHhhccCCcch
Q 011472 236 --SDG----EGIDKIVAMMEADRGVVLDWTVYATAASGYVK-------AGLSD-------KALAVLRKSEVLMMHNKFSR 295 (485)
Q Consensus 236 --g~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~ 295 (485)
++. +.+..+|++.. ...+ .+...|..++..+.+ .|+++ +|..+|++..... .|.+..
T Consensus 246 ~~~~~~~~~~~a~~~y~~al-~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~ 322 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCL-LVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNML 322 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHH-HHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHH
T ss_pred cCCcchhHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHH
Confidence 233 37788999988 5333 577888888888876 79987 8999999988621 455678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-H
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN-RGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDA-Y 373 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 373 (485)
.|..++..+.+.|++++|..+|+......+.+. ..|...+..+.+.|+++.|..+|++..+.... +...|...+.. +
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHH
Confidence 999999999999999999999997665433333 47888899999999999999999999876321 23333332222 3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC--HHHHHHHHHHHHh
Q 011472 374 CRRGLLHKAETLIYKAQLRGTEP-NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS--KECLAACLGYYKK 450 (485)
Q Consensus 374 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 450 (485)
...|+.++|..+|++..+.. | +...|..++..+.+.|+.++|..+|++++.. ....|+ ...|...+....+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~----~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS----GSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS----CCSCGGGCHHHHHHHHHHHHH
T ss_pred HHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999998754 4 5889999999999999999999999999973 223332 4588888888889
Q ss_pred cCCHhHHHHHHHHHhcCCC
Q 011472 451 ERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~ 469 (485)
.|+.+.+..+++++.+..|
T Consensus 476 ~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 9999999999999988765
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.7e-17 Score=148.05 Aligned_cols=245 Identities=9% Similarity=-0.021 Sum_probs=110.2
Q ss_pred hhCCHHHHHHHHHhhhhcCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHH
Q 011472 131 KVQGIEQAASYFNCVPEKLKLP--SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDS 208 (485)
Q Consensus 131 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 208 (485)
..|+++.|+..++++....|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3444444444444443333322 2223334455555555555543322 122344444445555555555555555
Q ss_pred HHHHHHHcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 209 LMHEMEEKGIDCDKY-TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 209 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.++++...+..|+.. .+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++...
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 555554444333322 233333445555555555555433 234444555555555555555555555555443
Q ss_pred hccCCcchhHHHH----HHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 011472 288 MMHNKFSRAYDFV----ITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI 363 (485)
Q Consensus 288 ~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (485)
.+.+ +...+ +..+...|++++|..+|+.+....+.+...++.+..++.+.|++++|...++++.+..+. +.
T Consensus 160 --~p~~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 160 --DEDA--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp --CTTC--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred --CcCc--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 1111 11111 122222344555555555443334444444555555555555555555555555544322 34
Q ss_pred ccHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 011472 364 RIPNHLIDAYCRRGLLHK-AETLIYKAQL 391 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 391 (485)
.++..++..+...|+.++ +..+++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444455555555555443 3445555554
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.9e-17 Score=146.61 Aligned_cols=274 Identities=7% Similarity=-0.050 Sum_probs=213.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCh--hHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCC
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTP--ADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKS 167 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 167 (485)
++.....|+++.|+..++...... +.. .....+.+++...|+++.|...++.. ..|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~---p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS---PERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC---chhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCc
Confidence 455677899999999888765432 222 23355688999999999999988763 33566788888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVKK-TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVA 246 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 246 (485)
.++|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988765554 45567777899999999999999987 4567788889999999999999999999
Q ss_pred HHHhcCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 011472 247 MMEADRGVVLDWTVY---ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQN 323 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (485)
++. +.. |+.... ..++..+...|++++|..+|+++... .|.+...++.+..++.+.|++++|...|+.....
T Consensus 155 ~~~-~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQ-DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHH-HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH-hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998 544 442211 22334445569999999999999987 5667789999999999999999999999987777
Q ss_pred CCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 011472 324 LKVYNRGYICVISSLLKFDGMES-AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAET 384 (485)
Q Consensus 324 ~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 384 (485)
.+.+..++..++..+...|+.++ +.++++++.+..+ +.. .+.+...+.+.++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~---~~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHP---FIKEYRAKENDFDRLVL 286 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CCh---HHHHHHHHHHHHHHHHH
Confidence 78888899999999999999865 6789999987643 322 23344455555555544
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.4e-17 Score=151.88 Aligned_cols=279 Identities=11% Similarity=0.029 Sum_probs=135.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHH
Q 011472 62 DPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASY 141 (485)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 141 (485)
+.++ +..+++++ +++.+|..+..++.+.|++++|++.|.+. .++..+..++..+...|++++|.++
T Consensus 18 ~ld~-A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 18 NLDR-AYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHH-HHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444 44465666 33469999999999999999999999653 4677888889999999999999999
Q ss_pred HHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 011472 142 FNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (485)
++...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 84 l~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 99888776778889999999999999999988884 267789999999999999999999999977
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 222 KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 222 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..| .-...++
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~a--d~l~~lv 214 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHA--DELEELI 214 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCH--HHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCH--hhHHHHH
Confidence 47999999999999999999999988 367899999999999999999977666532 222 2344688
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CcccHHHHHHHH
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF--DGMESAEKIFEEWESRNLCH------DIRIPNHLIDAY 373 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 373 (485)
..|.+.|++++|..+++......+.....|+-+.-++++- +++.+..+.|..- ..++| +...|..++..|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999966555566677788777777654 3455555554422 12222 578899999999
Q ss_pred HHcCCHHHHHHH
Q 011472 374 CRRGLLHKAETL 385 (485)
Q Consensus 374 ~~~g~~~~a~~~ 385 (485)
.+.++++.|...
T Consensus 293 ~~~~e~d~A~~t 304 (449)
T 1b89_A 293 DKYEEYDNAIIT 304 (449)
T ss_dssp HHTTCHHHHHHH
T ss_pred HhhchHHHHHHH
Confidence 999999988764
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.5e-20 Score=182.12 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHH
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRD---RGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSIL 228 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (485)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc
Q 011472 229 LSACAAASDG-EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC 307 (485)
Q Consensus 229 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (485)
|.++++.|+. +.|.++|++|. +.|+.||..+|+.++....+.+-++.+.++..++.....+++...+...|.+.|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999985 78999999999 889999999999998776664333333222222111111122345566677777765
Q ss_pred C
Q 011472 308 G 308 (485)
Q Consensus 308 ~ 308 (485)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.8e-15 Score=145.58 Aligned_cols=347 Identities=9% Similarity=-0.076 Sum_probs=250.5
Q ss_pred CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhc---------CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 011472 116 VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEK---------LKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDR---- 181 (485)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 181 (485)
+.....+..+...+...|++++|++.|++..+. .|+ ..+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567788888899999999999999986543 233 567999999999999999999999887542
Q ss_pred -C-CCC-CcchHHHHHHHHHHc--CChhhHHHHHHHHHHcCCCCCc-chHHHHHHH---HHhcCChHHHHHHHHHHHhcC
Q 011472 182 -G-LVK-KTIDYNSMMNVYYQT--GNYKKLDSLMHEMEEKGIDCDK-YTFSILLSA---CAAASDGEGIDKIVAMMEADR 252 (485)
Q Consensus 182 -~-~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~ 252 (485)
+ ..+ ...++..+..++... +++++|+..|++..+. .|+. ..+..+..+ +...++.++|++.+++.. +.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al-~l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI-RL 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH-HH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hc
Confidence 1 111 234566666566554 5699999999999885 4443 344444443 445678889999999888 54
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 011472 253 GVVLDWTVYATAASGYVK----AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN 328 (485)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 328 (485)
+. .+..++..+...+.. .|++++|.+.+++.... .+.+..++..+...|...|++++|...++......+.+.
T Consensus 205 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 205 NP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp CS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 44 556666666655554 46788999999998877 556668899999999999999999999998777777777
Q ss_pred ccHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 011472 329 RGYICVISSLLKF-------------------DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKA 389 (485)
Q Consensus 329 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 389 (485)
.++..+..++... +..+.|...++...+..+. +...+..+...|...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 7777777666432 2356788888888776543 6788899999999999999999999999
Q ss_pred HHcCCCCcH--HHHHHHHH-HHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 390 QLRGTEPNV--RTWYLMAT-GYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 390 ~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+....|.. ..+..+.. .....|+.++|++.|+++++ +.|+...... ....+.+++++..+
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-------i~~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-------INQKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-------SCCCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCcccHHHHH---------HHHHHHHHHHHHHH
Confidence 986543322 12233332 34578999999999999996 3565433222 23445667777788
Q ss_pred CCCCCHHHHHHHH-HHHhcC
Q 011472 467 KEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 467 ~~~~~~~~~~~l~-~~~~~g 485 (485)
.+|.++.+|..|. .|...|
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcC
Confidence 8888888898888 776654
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.6e-17 Score=148.55 Aligned_cols=380 Identities=9% Similarity=0.029 Sum_probs=183.1
Q ss_pred ccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011472 19 LGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKR 98 (485)
Q Consensus 19 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 98 (485)
.|++++|..+++++.. + ..|..+..+..+.|+..+++..+ .+ .+|..+|..++..+...|+
T Consensus 16 ~~~ld~A~~fae~~~~--~----------~vWs~La~A~l~~g~~~eAIdsf-ik------a~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE--P----------AVWSQLAKAQLQKGMVKEAIDSY-IK------ADDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC--h----------HHHHHHHHHHHHcCCHHHHHHHH-Hc------CCCHHHHHHHHHHHHhCCC
Confidence 3568899999999842 2 24578888999999999855544 22 3688899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQM 178 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 178 (485)
+++|+..++...+.. .++.+...++.+|.+.|+++++.++++ +|+..+|+.+...|...|.+++|...|..+
T Consensus 77 ~EeAi~yl~~ark~~---~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999888777643 457778888999999999999998886 367789999999999999999999999976
Q ss_pred HhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH
Q 011472 179 RDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW 258 (485)
Q Consensus 179 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 258 (485)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~a 207 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHA 207 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCH
Confidence 47999999999999999999999998 2778999999999999999999554443 22444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CC------CCccc
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQN--LK------VYNRG 330 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~------~~~~~ 330 (485)
.-...++..|.+.|++++|..+++..... .+.....|+-|.-+|++- ++++.++.++..... ++ .+...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44557999999999999999999998765 455557788887777764 344444444432222 12 24678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
|..+...|.+.++++.|...+ .+. +|+..-...+.+...+..+.+--.+...-..+. .+...+-|+.++..
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm---~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGG
T ss_pred HHHHHHHHHhhchHHHHHHHH---HhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 889999999999999887643 332 335555556666666666665544444433332 23335556666655
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCC---------ccCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011472 411 NNQSEKGVEAMKKALVLLEAGTRW---------KPSKECLAACLGYYKKERDIEGADYFIK 462 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (485)
.=+...++++|++.-.. +-+ .-+..+=.++-..+....|++.-..-.+
T Consensus 356 ~ld~~r~v~~~~~~~~l----~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQL----PLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GCCHHHHHHHHHHTTCT----TTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHcCCc----HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555543211 001 1123333345556667777665554433
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=170.38 Aligned_cols=115 Identities=6% Similarity=-0.077 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----hhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 011472 295 RAYDFVITQYAACGNKDDVLRVWKRY----KQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLI 370 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 370 (485)
.+|+++|++|++.|++++|.++|+.+ ..+..||..||++||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45555555555555555555555422 23455555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011472 371 DAYCRRGL-LHKAETLIYKAQLRGTEPNVRTWYLMATGYL 409 (485)
Q Consensus 371 ~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (485)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 55555554 2455555555555555555555555554333
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=3e-14 Score=145.03 Aligned_cols=342 Identities=13% Similarity=0.047 Sum_probs=174.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSN-FVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIAL 158 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 158 (485)
..++.-....+++|...|.+.+|+++++.+.-.+. +.-.++.-..++....+. +..+..++.+++... + ...+
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDI 1055 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHH
Confidence 34555566777777888888888888888774431 112233333344333333 333333333333211 1 2224
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 011472 159 LNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDG 238 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 238 (485)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 4555556666666666665321 1111122221 4455555555555331 234555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
++|++.|.+. -|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 6666665332 234445556666666666666666665544432 11122334555566665555433222
Q ss_pred HHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH
Q 011472 319 RYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNV 398 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 398 (485)
..++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+.
T Consensus 1191 -----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1191 -----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred -----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 1223344445566666666666666666553 25555666666666666666665544 234
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHH
Q 011472 399 RTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRL 478 (485)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 478 (485)
.+|..+..+|...|++..|....... ..+...+..++..|.+.|.+++|+.+++......+.....|.-|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~I----------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHI----------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh----------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 55555555555555555555544321 22344455566666666666666666666655554444455444
Q ss_pred H-HHH
Q 011472 479 L-NNI 482 (485)
Q Consensus 479 ~-~~~ 482 (485)
. .|.
T Consensus 1321 aiLya 1325 (1630)
T 1xi4_A 1321 AILYS 1325 (1630)
T ss_pred HHHHH
Confidence 4 443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.3e-16 Score=135.28 Aligned_cols=226 Identities=12% Similarity=-0.015 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CC----HHHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVV--LD----WTVY 261 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~----~~~~ 261 (485)
..|..+...+...|++++|...|++..+.. .+..++..+..++...|++++|...+++.. +.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHHHH
Confidence 345556666666666666666666666654 455566666666666666666666666655 22111 11 3455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
..+...|...|++++|.+.|+++... .+ + ...+...|++++|...++......+.+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HR-T-------ADILTKLRNAEKELKKAEAEAYVNPEKAE------------ 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CC-C-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHH------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cc-h-------hHHHHHHhHHHHHHHHHHHHHHcCcchHH------------
Confidence 55666666666666666666665543 11 1 12333444444444444433333333333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAM 421 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 421 (485)
.+..+...+...|++++|...+++..+... .+...|..+...+...|++++|++.+
T Consensus 141 -----------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 141 -----------------------EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455555555555555555555554321 13445555555555555555555555
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 422 KKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 422 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
+++++. .+.+...+..+..++.+.|++++|...+++..+..
T Consensus 197 ~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEK------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 555542 12234455555555555555555555555555444
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=3.6e-14 Score=144.47 Aligned_cols=319 Identities=11% Similarity=0.037 Sum_probs=158.3
Q ss_pred chHHHHHhhcCCCCCCCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHH
Q 011472 49 SMYKLYRMLSPMGDPNDSMVPLLDQWVEEG--RPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRL 126 (485)
Q Consensus 49 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
......+.++..|.+.+ +.++++...-.+ +.-+...-+.++....+. +.....+..+..... . ..-+.
T Consensus 987 eVs~~vKaf~~aglp~E-aieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-----d---~~eIA 1056 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNE-LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-----D---APDIA 1056 (1630)
T ss_pred HhHHHHHHHHhCCCHHH-HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----c---HHHHH
Confidence 36677778888878777 666778777332 112334455555554444 334444444443311 1 12244
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
..+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 555566666666666665421 1111222221 4455555555555331 344555555556566666666
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 207 DSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.+.|.+. -|...|..++.++.+.|++++|.++|.... +.. +++...+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 6555432 244455555555666666666666555554 222 22112223555555555555322221 1
Q ss_pred hhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 011472 287 LMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP 366 (485)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (485)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|
T Consensus 1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 112234444555555555666665555542 24555555555555555555555544 133455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 367 NHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555555555555554443321 1234444455555555555555555555444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-15 Score=132.26 Aligned_cols=225 Identities=13% Similarity=0.033 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCC--CCC----cchH
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGI--DCD----KYTF 225 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 225 (485)
...+..+...+...|++++|+..|++..+.. ++...|..+..++...|++++|.+.+++..+... .|+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5678889999999999999999999999887 6889999999999999999999999999987532 122 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 226 SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 226 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
..+..++...|++++|...|+++. . ..|+. ..+...|++++|...++++... .+.+...+..+...+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~-~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSL-T--EHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-H--HCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-h--cCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH
Confidence 889999999999999999999998 4 33553 4566778899999999999886 4555678888999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 385 (485)
..|++++|...++......+.+..++..+...+...|++++|...++++.+..+. +...+..+...|.+.|++++|...
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999988666555556666666666666677777777766666655322 344555556666666666666666
Q ss_pred HHHHHH
Q 011472 386 IYKAQL 391 (485)
Q Consensus 386 ~~~m~~ 391 (485)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=7.1e-16 Score=131.48 Aligned_cols=210 Identities=15% Similarity=-0.019 Sum_probs=110.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHH
Q 011472 220 CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDF 299 (485)
Q Consensus 220 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 299 (485)
++...+..+...+.+.|++++|...|++.. +..+ .+...+..+..++.+.|++++|+..|++..+. .|.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 344555555556666666666666666665 3333 44555555666666666666666666665554 3334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH
Q 011472 300 VITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLL 379 (485)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (485)
+..++...+.. . +. .....|++++|...+++..+..+. +...+..+...|...|++
T Consensus 79 lg~~~~~~~~~------------~--~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 79 LSEAYVALYRQ------------A--ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHHHT------------C--SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhh------------h--hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 55555444000 0 00 001116666666666666655332 445566666666666777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHH
Q 011472 380 HKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY 459 (485)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 459 (485)
++|...|++..+.. .+...+..+..++...|++++|+..|+++++. .+.+...+..+...+.+.|++++|..
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ------APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 77777777666655 45666666666666777777777777776652 22245566666666666777777766
Q ss_pred HHHHHh
Q 011472 460 FIKLLT 465 (485)
Q Consensus 460 ~~~~~~ 465 (485)
.+++..
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 666543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=2.9e-15 Score=142.53 Aligned_cols=347 Identities=13% Similarity=0.078 Sum_probs=231.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCH---HHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGI---EQAASYFNCVPEKLKLPSVYIALLNAYAC 164 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (485)
.+...+.+.|++++|++.|+...+.+ ++.....+...+...|+. ++|...|++..+. ++..+..|...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 35667788899999999999998876 445555566666667777 8999999998875 66667777775555
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChh---hHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 165 AK-----SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYK---KLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 165 ~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
.+ ++++|+..|++..+.| +...+..|...|...+..+ ++.+.+......|. ......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 54 7889999999998876 3447788888887766544 45555555554443 456667777777777
Q ss_pred ChH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc--
Q 011472 237 DGE----GIDKIVAMMEADRGVVLDWTVYATAASGYVKAG---LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC-- 307 (485)
Q Consensus 237 ~~~----~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 307 (485)
.++ .+..+++... . +. |+ .+..+...|...| +.++|++.|++....+ +++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~-~-~~-~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 156 TYDQHLDDVERICKAAL-N-TT-DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp CGGGGHHHHHHHHHHHT-T-TC-TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGG
T ss_pred CcccCHHHHHHHHHHHH-c-CC-HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCC
Confidence 544 4445555544 2 22 33 6778888888899 8999999999988874 34334556777777655
Q ss_pred --CCHHHHHHHHHHHhhcCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-----
Q 011472 308 --GNKDDVLRVWKRYKQNLKVYNRGYICVISS-L--LKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG----- 377 (485)
Q Consensus 308 --~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 377 (485)
+++++|+.+|+... +.+...+..+... + ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999655 4566667777776 4 56889999999999998876 5567777777777 45
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh---
Q 011472 378 LLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ----NNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK--- 450 (485)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 450 (485)
++++|...|++.. . -++..+..|...|.. ..++++|.++|+++.+. |. ......|...|..
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~---~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-----GQ---NSADFAIAQLFSQGKG 369 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-----TC---TTHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-----Ch---HHHHHHHHHHHHhCCC
Confidence 8999999999887 3 366777777777766 44899999999999873 42 3344455555543
Q ss_pred -cCCHhHHHHHHHHHhcCCCCCH
Q 011472 451 -ERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 451 -~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
..+.++|..+|+...+.|.+..
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~~~a 392 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDTPEA 392 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHH
Confidence 4588999999999988887543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.9e-15 Score=128.77 Aligned_cols=198 Identities=14% Similarity=0.049 Sum_probs=125.9
Q ss_pred CCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011472 184 VKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYAT 263 (485)
Q Consensus 184 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
+++...+..+...+.+.|++++|...|++.++... .+...+..+..++.+.|++++|+..|++.. +..+ .+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLV-ARTP-RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHH
Confidence 45788899999999999999999999999998633 256788889999999999999999999998 5554 56788888
Q ss_pred HHHHHHhc-----------CChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHH
Q 011472 264 AASGYVKA-----------GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYI 332 (485)
Q Consensus 264 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (485)
+..++... |++++|+..|++..+. .|.+...+..+..++...|++++|+..|+...... .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 99998888 7777777777777665 34444566666666666666666666665333222 4444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 011472 333 CVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYK 388 (485)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 388 (485)
.+..++...|++++|...|+++.+..+. +...+..+...+...|++++|...+++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555555555555555443222 333444444444444555554444443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=7.3e-15 Score=128.53 Aligned_cols=210 Identities=13% Similarity=-0.018 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 337 (485)
...+..+...+...|++++|.+.|+++... .+.+..++..+...|...|++++|...++......+.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 345556666666677777777777766655 334446666666677777777777777765544444555666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH
Q 011472 338 LLKFDGMESAEKIFEEWESRNLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (485)
+...|++++|.++++++.+.+..| +...+..+...|...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 345566777777788888888888888776542 246677777788888888888
Q ss_pred HHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHH
Q 011472 417 GVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQD 476 (485)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 476 (485)
|.+.++++.+ ..+.+...+..+...+.+.|++++|.+.++++.+..|.++....
T Consensus 194 A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQ------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHT------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHH------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888775 33446667777777778888888888888888877776665544
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=6.8e-15 Score=135.69 Aligned_cols=243 Identities=8% Similarity=0.004 Sum_probs=140.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL-SDKALAVLRKSEVLMMHNKFSRAYDFVIT 302 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (485)
.|..+..++.+.|++++|+..++++. ..+. -+...|..+..++...|+ +++|+..|+++... .+.+..+|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 34444455555555666666665555 3332 345555555555555564 66666666665554 3444455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-cCCHHH
Q 011472 303 QYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR-RGLLHK 381 (485)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 381 (485)
++...|++++|+..|+......+-+...|..+..++...|++++|...++++++..+. +...|+.+..++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 6666666666666666555555555556666666666666666666666666655433 45556666666666 444355
Q ss_pred H-----HHHHHHHHHcCCCCcHHHHHHHHHHHhccC--CHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC--
Q 011472 382 A-----ETLIYKAQLRGTEPNVRTWYLMATGYLQNN--QSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER-- 452 (485)
Q Consensus 382 a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 452 (485)
| +..+++.++.... +...|..+...+...| ++++|++.+.++ + ....+...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHhcc
Confidence 5 3666666654321 3556666666666666 466676666665 3 33445566666666666653
Q ss_pred ------C-HhHHHHHHHHH-hcCCCCCHHHHHHHH
Q 011472 453 ------D-IEGADYFIKLL-TGKEIISADLQDRLL 479 (485)
Q Consensus 453 ------~-~~~a~~~~~~~-~~~~~~~~~~~~~l~ 479 (485)
+ .++|+++++++ .+.+|.....|..+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 2 46677777777 666666666666655
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.3e-14 Score=128.42 Aligned_cols=233 Identities=10% Similarity=-0.021 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL--DWTVYATAAS 266 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 266 (485)
.+......+...|++++|+..|++..+.... +...+..+..++...|++++|...+++.. +....+ ....|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 3445555666666666666666666654221 33456666666666777777777776666 322111 2334666777
Q ss_pred HHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHH
Q 011472 267 GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMES 346 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 346 (485)
.+...|++++|++.|++.... .+.+..++..+...|...|++++|+..|+......+.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777665 344446677777777777777777777775554444455555555523333446777
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCc------HHHHHHHHHHHhccCCHHH
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL---LHKAETLIYKAQLRG-TEPN------VRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~ 416 (485)
|...++++.+..+. +...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777766665322 34455555666666665 566666666655421 1122 1355556666666666777
Q ss_pred HHHHHHHHHH
Q 011472 417 GVEAMKKALV 426 (485)
Q Consensus 417 A~~~~~~~~~ 426 (485)
|.+.|+++++
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7776666665
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=7.6e-15 Score=129.98 Aligned_cols=195 Identities=12% Similarity=0.001 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc--chHHHHHH
Q 011472 119 PADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKT--IDYNSMMN 195 (485)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~ 195 (485)
++........+...|++++|...|+++.+..|+ ..++..+..+|...|++++|+..|++..+.+..|+. .+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 444555566777777777777777777776654 446777777777777777777777777764322222 12677777
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSD 275 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 275 (485)
.+...|++++|.+.|++..+.... +..++..+..++...|++++|...|++.. +... .+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777765322 44567777777777777777777777776 4322 45556666662333345777
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC---HHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN---KDDVLRVWK 318 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 318 (485)
+|.+.|+++.+. .+.+...+..+..++...|+ +++|...++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 777777777665 34444566666666666665 555666665
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=1.4e-14 Score=124.12 Aligned_cols=212 Identities=11% Similarity=-0.068 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
+...+..+...+...|++++|.+.|+++... .+.+..++..+...|...|++++|...++......+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3455566666777777777777777776665 34445666667777777777777777777555545555666777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCH
Q 011472 337 SLLKF-DGMESAEKIFEEWESRNLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQS 414 (485)
Q Consensus 337 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 414 (485)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622222 245567777778888888888888888776532 2467777777888888888
Q ss_pred HHHHHHHHHHHHhhccCCCCc-cCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHH
Q 011472 415 EKGVEAMKKALVLLEAGTRWK-PSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDR 477 (485)
Q Consensus 415 ~~A~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 477 (485)
++|.+.++++++. .+ .+...+..+...+...|+.+.|..+++.+.+..|.++.....
T Consensus 164 ~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 164 GDADYYFKKYQSR------VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHH------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8888888888763 22 456666666677778888888888888887767766655443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=2.6e-15 Score=130.57 Aligned_cols=210 Identities=8% Similarity=-0.049 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLL 339 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 339 (485)
.|..+...+...|++++|...|+++... .+.+..++..+...+...|++++|+..++......+.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3344444444555555555555554443 23333444455555555555555555555433333334445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHH
Q 011472 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVE 419 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 419 (485)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555665555555554322 444555566666666666666666666665431 245566666666667777777777
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 420 AMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
.++++.+. .+.+..++..+..++.+.|++++|...++++.+..|.++..+..+.
T Consensus 181 ~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 181 QFAAVTEQ------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHh------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 77766652 2234556666666677777777777777777666666665555443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.1e-14 Score=134.26 Aligned_cols=213 Identities=7% Similarity=-0.053 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Q 011472 122 VAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKS-AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ 199 (485)
Q Consensus 122 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 199 (485)
+..+..++.+.|++++|...|+++....|+ ..+|+.+..++...|+ +++|+..|++..+.... +...|+.+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 333444455555566666666655555543 4556666666666664 66666666666655433 45566666666666
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCChHHH-
Q 011472 200 TGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK-AGLSDKA- 277 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 277 (485)
.|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++. +.+. -+...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al-~l~P-~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLL-KEDV-RNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHhcCcchHHH
Confidence 66666666666666654322 44555556666666666666666666666 4343 455556666666666 4443555
Q ss_pred ----HHHHHHHHHhhccCCcchhHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 278 ----LAVLRKSEVLMMHNKFSRAYDFVITQYAACG--NKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 278 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
++.|++.... .+.+...|+.+...+...| ++++|++.+..+ ...+.+...+..++..+.+.
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 3555555554 3444455555555555544 345555544433 33333334444444444443
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.8e-15 Score=142.41 Aligned_cols=182 Identities=13% Similarity=0.013 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC----cccHHHHHHHHHhcCC
Q 011472 274 SDKALAVLRKSEVLMM----HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK--VY----NRGYICVISSLLKFDG 343 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~~~ 343 (485)
+++|.+.+++...... .+....++..+...|...|++++|...++......+ ++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 5555555555443210 111123455666666666666666666663221111 11 1256666677777777
Q ss_pred HHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhccCC
Q 011472 344 MESAEKIFEEWESRNLC-HD----IRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE-PN----VRTWYLMATGYLQNNQ 413 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~ 413 (485)
+++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 77777777766543111 01 345667788888888888888888877643110 11 5567778888888999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHh
Q 011472 414 SEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIE 455 (485)
Q Consensus 414 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 455 (485)
+++|.+.++++++.............++..+...+...|+..
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999988887642211111223456667777777777653
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=4.2e-15 Score=131.83 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 153 SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 153 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
.++..+...+...|++++|+..|++..+.... +..+|..+...+...|++++|.+.|++..+... .+..++..+..++
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHH
Confidence 34444455555555555555555555443222 344455555555555555555555555544321 1334444445555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 233 AAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
...|++++|...|+++. +.. |+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFY-QDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHH-HhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHH
Confidence 55555555555555554 222 22122222222333445555555555444443 22222222 23334444444444
Q ss_pred HHHHHHHHhhcCC----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 313 VLRVWKRYKQNLK----VYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 313 a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
|...++......+ .+..++..+...+...|++++|...++++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444442211111 0123344444444444444444444444443
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=5.2e-15 Score=139.19 Aligned_cols=279 Identities=14% Similarity=0.049 Sum_probs=188.2
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHh---cCCCC-CCHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD----KYTFSILLSACAAASDGEGIDKIVAMMEA---DRGVV-LDWT 259 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~-~~~~ 259 (485)
..+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++... ..+.. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34444555555666666666666666554211 1 13455555666666666666666665431 11111 1244
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC----cchhHHHHHHHHHhcCC--------------------HHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNK----FSRAYDFVITQYAACGN--------------------KDDVLR 315 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~--------------------~~~a~~ 315 (485)
++..+...|...|++++|...+++......... ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566777778888888888888877765521111 13478888888888888 888888
Q ss_pred HHHHHhh---cC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHHcCCHHHHHH
Q 011472 316 VWKRYKQ---NL---KVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLC-HD----IRIPNHLIDAYCRRGLLHKAET 384 (485)
Q Consensus 316 ~~~~~~~---~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~ 384 (485)
.++.... .. +....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 8884321 11 122346888899999999999999999998754221 11 2378888999999999999999
Q ss_pred HHHHHHHcCCC-Cc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHH
Q 011472 385 LIYKAQLRGTE-PN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY 459 (485)
Q Consensus 385 ~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 459 (485)
.+++..+.... ++ ..++..+...|...|++++|.+.++++++.............++..+...+...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988753111 11 56788889999999999999999999987411111111125678888899999999999999
Q ss_pred HHHHHhcC
Q 011472 460 FIKLLTGK 467 (485)
Q Consensus 460 ~~~~~~~~ 467 (485)
.+++..+.
T Consensus 329 ~~~~al~~ 336 (406)
T 3sf4_A 329 FAEKHLEI 336 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=7.4e-14 Score=122.08 Aligned_cols=200 Identities=12% Similarity=-0.013 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASG 267 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (485)
..|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++. +... .+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKAL-ASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCc-CcHHHHHHHHHH
Confidence 345555555555555555555555555432 1133444445555555555555555555554 3222 234444445555
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESA 347 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 347 (485)
|...|++++|.+.++++...+..+.+... +..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------------------~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRV----------------------------------FENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHH----------------------------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHH----------------------------------HHHHHHHHHHcCCHHHH
Confidence 55555555555555554431112223334 44444455555555555
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 348 EKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
...++++.+.... +...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|.++++++.+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555444221 344455555555555555666555555554321 2344455555555556666666666666554
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=2.4e-12 Score=126.62 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCC---HHHHHHHHH
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG---IEQAASYFN 143 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~ 143 (485)
....+++-+... +-|...|..++..+.+.+.++.+..+|+.+... +|..+..+...+..-.+.+. ++.+..+|+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 444455555544 579999999999999999999999999999987 56777777777887788888 999999999
Q ss_pred hhhhcC---CChHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHH---------Hc
Q 011472 144 CVPEKL---KLPSVYIALLNAYACAKSA--------EKAEIIMQQMRD-RGL-VKK-TIDYNSMMNVYY---------QT 200 (485)
Q Consensus 144 ~~~~~~---~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~l~~~~~---------~~ 200 (485)
+..... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 988877 8888888887766555443 344577877653 465 554 356666665433 23
Q ss_pred CChhhHHHHHHHHHH
Q 011472 201 GNYKKLDSLMHEMEE 215 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~ 215 (485)
++++.+.++|+..+.
T Consensus 208 ~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 345667777777764
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=6.4e-14 Score=124.17 Aligned_cols=248 Identities=8% Similarity=-0.136 Sum_probs=177.8
Q ss_pred HHcCChhhHHHHHHHHHHcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 011472 198 YQTGNYKKLDSLMHEMEEKGID---CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274 (485)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 274 (485)
...|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++. +... .+..++..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCH
Confidence 3457788999999998876321 134567778888888999999999999888 5443 5678888888899999999
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 354 (485)
++|++.|+++... .+.+..++..+..+|...|++++|...++......+.+ ......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999988886 45556788888899999999999999998655444333 33444455556778889999988877
Q ss_pred HhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccC
Q 011472 355 ESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE--P-NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAG 431 (485)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 431 (485)
..... ++...+ .++..+...++.++|...+.+..+.... | +...+..+...|...|++++|.+.|+++++
T Consensus 171 ~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 243 (275)
T 1xnf_A 171 FEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA----- 243 (275)
T ss_dssp HHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----
T ss_pred HhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----
Confidence 76532 243444 4667777778888888888887653211 1 156778888888888999999999988885
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011472 432 TRWKPSKECLAACLGYYKKERDIEGADYFI 461 (485)
Q Consensus 432 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (485)
..|+. +.....++...|++++|++.+
T Consensus 244 --~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 --NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 24532 222344667778888877665
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=9.3e-14 Score=118.97 Aligned_cols=197 Identities=10% Similarity=-0.078 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
+..+...+...|++++|.+.|+++. +... .+...+..+...|...|++++|.+.++++... .+.+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDAL-KSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-HhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 3334444444444444444444444 2221 23344444444444445555555554444443 222334444444455
Q ss_pred Hhc-CCHHHHHHHHHHHhh--cCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 305 AAC-GNKDDVLRVWKRYKQ--NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 305 ~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
... |++++|...++.... ..+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHH
Confidence 555 555555555543332 11122334445555555555555555555555544222 34455555566666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666655533212344555555555666666666666666553
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.6e-14 Score=125.48 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ 303 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (485)
.|..+...+...|++++|...|+++. +... .+...+..+...+...|++++|++.++++... .+.+..++..+...
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAI-EENK-EDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNV 100 (243)
T ss_dssp -----------------CCTTHHHHH-TTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHH
Confidence 34444444555555555555555555 3222 34445555555555555555555555555544 23334555555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHH
Q 011472 304 YAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383 (485)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 383 (485)
+...|++++|...++......+.+...+..+...+...|++++|...++++.+.... +...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555444444444455555666666666666666666666554322 4455666666666677777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 384 TLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..++++.+... .+..++..+...|...|++++|.+.++++++
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 77766665432 2355666666677777777777777777765
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=5.7e-13 Score=117.95 Aligned_cols=219 Identities=18% Similarity=0.047 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh----hCCHHHHHHHHHhhhhcCCChHHHHH
Q 011472 82 DMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAK----VQGIEQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 82 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
++.++..+...+...|++++|++.|+...+.+ ++..+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 45566666677777777777777777776633 44555555666666 667777777776666553 5566666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 011472 158 LLNAYAC----AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKGIDCDKYTFSILL 229 (485)
Q Consensus 158 ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 229 (485)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 6666666 666777777776666653 55566666666666 666666666666666653 334455555
Q ss_pred HHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 230 SACAA----ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK----AGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 230 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
..+.. .+++++|...|++.. +.+ +...+..+...|.. .+++++|++.|++..+.+ + ...+..+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~--~~a~~~l~ 225 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKAC-DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N--GGGCFNLG 225 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C--HHHHHHHH
Confidence 55555 666666666666665 332 34455556666666 666666666666665542 1 24555555
Q ss_pred HHHHh----cCCHHHHHHHHHH
Q 011472 302 TQYAA----CGNKDDVLRVWKR 319 (485)
Q Consensus 302 ~~~~~----~~~~~~a~~~~~~ 319 (485)
..|.+ .+++++|...|+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHH
Confidence 66665 5666666666654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.3e-14 Score=136.91 Aligned_cols=201 Identities=12% Similarity=0.050 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHHcCChhhHHHHHHHHHHc----CCCC-Ccch
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKT----IDYNSMMNVYYQTGNYKKLDSLMHEMEEK----GIDC-DKYT 224 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 224 (485)
.+..+...+...|++++|+..|++..+.+.. +. ..|..+...+...|++++|...+++..+. +-.| ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445666777788888888888887765322 22 35677777777778888888877776553 1111 2335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADR----G-VVLDWTVYATAASGYVKAGL-----------------SDKALAVLR 282 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 282 (485)
+..+...|...|++++|...+++.. +. + .+....++..+...|...|+ +++|++.++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5566666777777777777776665 21 1 11223355566666666666 666666666
Q ss_pred HHHHhh----ccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------ccHHHHHHHHHhcCCHHHHHHHHH
Q 011472 283 KSEVLM----MHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN------RGYICVISSLLKFDGMESAEKIFE 352 (485)
Q Consensus 283 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~ 352 (485)
+..... ..+....++..+...|...|++++|+..++......+... .++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 554431 1111122455555555555555555555553221111011 134444444444455555554444
Q ss_pred HHHh
Q 011472 353 EWES 356 (485)
Q Consensus 353 ~~~~ 356 (485)
+..+
T Consensus 288 ~al~ 291 (411)
T 4a1s_A 288 RTLA 291 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.5e-14 Score=132.06 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=88.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc----HH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLC-H----DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE-PN----VR 399 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~ 399 (485)
++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|...+++..+.... ++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4555566666666666666666665533111 0 1225667777788888888888888776542110 11 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
++..+...+...|++++|.+.++++++.............++..+...+.+.|++++|...+++..+..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 667777888888888888888888876411111111123467777888888899999988888877654
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=9.5e-13 Score=116.55 Aligned_cols=223 Identities=13% Similarity=-0.019 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHHHHcCCCCCcchHHH
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKGIDCDKYTFSI 227 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 227 (485)
+.++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444445555555555555544421 33344444444444 555555555555554443 3334444
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhhccCCcchhHHH
Q 011472 228 LLSACAA----ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK----AGLSDKALAVLRKSEVLMMHNKFSRAYDF 299 (485)
Q Consensus 228 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 299 (485)
+...|.. .+++++|...|++.. +.+ +...+..+...|.. .+++++|++.|++..+.+ +..++..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 4444544 555555555555554 322 34444455555555 555555555555554432 2234445
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 011472 300 VITQYAA----CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK----FDGMESAEKIFEEWESRNLCHDIRIPNHLID 371 (485)
Q Consensus 300 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (485)
+...|.. .+++++|...|+..... .+...+..+...+.. .+++++|...+++..+.+. ...+..+..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 5555554 55555555555533222 123444555555555 5666666666666655432 344555566
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcC
Q 011472 372 AYCR----RGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 372 ~~~~----~g~~~~a~~~~~~m~~~~ 393 (485)
.|.+ .+++++|...|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666 666666666666666654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.3e-14 Score=136.85 Aligned_cols=277 Identities=12% Similarity=0.015 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCcchHH
Q 011472 122 VAIRLDLIAKVQGIEQAASYFNCVPEKLKLP-----SVYIALLNAYACAKSAEKAEIIMQQMRDR----GL-VKKTIDYN 191 (485)
Q Consensus 122 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 191 (485)
+......+...|++++|...|+++....|+. .+|..+...|...|++++|+..|++..+. +. .....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3344667788999999999999988877653 46888889999999999999999987643 11 12345688
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 011472 192 SMMNVYYQTGNYKKLDSLMHEMEEK----GIDC-DKYTFSILLSACAAASD-----------------GEGIDKIVAMME 249 (485)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~~ 249 (485)
.+...+...|++++|...+++..+. +-.| ...++..+...+...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 8888999999999999999988764 1111 23467778888999999 999999988875
Q ss_pred hc---CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc----chhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011472 250 AD---RGV-VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF----SRAYDFVITQYAACGNKDDVLRVWKRYK 321 (485)
Q Consensus 250 ~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (485)
.- .+. .....++..+...|...|++++|++.+++.........+ ..++..+...|...|++++|...++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 21 111 122347778888999999999999999998776322121 2278888999999999999999988432
Q ss_pred hcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-
Q 011472 322 QNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG----TEP- 396 (485)
Q Consensus 322 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p- 396 (485)
...+ ..++.. ....++..+...|...|++++|...+++..+.. ..+
T Consensus 291 ~~~~--------------~~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 291 ALAV--------------ELGERE---------------VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHH--------------HTTCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHH--------------HcCCHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 2111 001100 012234445556666666666666666654321 001
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 397 NVRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
...++..+...|...|++++|.+.++++++.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1346677777888888888888888888764
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=3.5e-14 Score=135.05 Aligned_cols=378 Identities=14% Similarity=0.052 Sum_probs=249.9
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 011472 53 LYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRF---SHALQISMWMTKKSNFVLTPADVAIRLDLI 129 (485)
Q Consensus 53 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (485)
+.....+.|+..+ +..++++..+.| +...+..+...+...|+. ++|++.|+...+. ++.....+...+
T Consensus 9 la~~~~~~g~~~~-A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVT-AQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHH-HHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 4445555666666 667888888776 344555666666778888 8999999998753 556666666644
Q ss_pred Hhh-----CCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC
Q 011472 130 AKV-----QGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAE---KAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG 201 (485)
Q Consensus 130 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 201 (485)
... +++++|...|++....++ ...+..|...|...+..+ ++.+.+......| +...+..|...|...+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 444 388999999999888653 346777888887765543 4455555555554 5667888899999888
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CCh
Q 011472 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS---DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA----GLS 274 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 274 (485)
.++++......+.+.-...+...+..|...|...| +.++|++.|++.. +.|. ++...+..+...|... +++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 77777666555544433344458888999999999 9999999999998 7676 6777666788888665 799
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHH-H--HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC-----CHHH
Q 011472 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQ-Y--AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD-----GMES 346 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 346 (485)
++|++.|++.. . .+...+..+... + ...+++++|+..|+...... +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999976 2 344677788777 4 56899999999999654332 5667777887777 55 9999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCCHHHHH
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCR----RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ----NNQSEKGV 418 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 418 (485)
|...|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 255677777777776 348999999999999876 34555666666653 56899999
Q ss_pred HHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 419 EAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+|+.+.+. |. ++.......+......++..+|..+.++..+
T Consensus 379 ~~~~~A~~~-----g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQ-----DT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTT-----CC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----CC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999974 43 3333322333333344566677777665544
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=2.9e-14 Score=130.20 Aligned_cols=269 Identities=15% Similarity=0.075 Sum_probs=144.5
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CcchHHHHHH
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKL-----PSVYIALLNAYACAKSAEKAEIIMQQMRDR----GLVK-KTIDYNSMMN 195 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~ 195 (485)
...+...|++++|...|+++....|+ ..++..+...+...|++++|...+++..+. +..| ...++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 44455556666666666665554433 134555555555556666666655554322 1011 1233444444
Q ss_pred HHHHcCChhhHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-
Q 011472 196 VYYQTGNYKKLDSLMHEMEEKGID-CDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL- 273 (485)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 273 (485)
.+...|++++|...+++..+.... ++ ......++..+...|...|+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELND--------------------------------KVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcC--------------------------------chHHHHHHHHHHHHHHHcCcc
Confidence 445555555555555444332100 00 00002234444455555555
Q ss_pred -------------------hHHHHHHHHHHHHh----hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----
Q 011472 274 -------------------SDKALAVLRKSEVL----MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK----- 325 (485)
Q Consensus 274 -------------------~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 325 (485)
+++|.+.+++.... +..+....++..+...+...|++++|...++......+
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 55555555544332 10111123455566666666666666666663221111
Q ss_pred -CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC
Q 011472 326 -VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLC-HD----IRIPNHLIDAYCRRGLLHKAETLIYKAQLRG----TE 395 (485)
Q Consensus 326 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~ 395 (485)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.. ..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 11225666667777777777777777766543111 01 3456677788888888888888888876421 11
Q ss_pred C-cHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 396 P-NVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 396 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+ ...++..+...|...|++++|.+.++++++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 144677788888999999999999998886
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=6.2e-13 Score=110.05 Aligned_cols=166 Identities=17% Similarity=0.084 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
+..+|..+...|...|++++|++.|++..+. .|.+..++..+..+|.+.|++++|...+.......+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4556667777777777777777777777665 44555667777777777777777777777555555555566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH
Q 011472 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (485)
.+...++++.+...+.+..+..+. +...+..+...|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 666677777777777766665332 4555666666777777777777777776664321 35666667777777777777
Q ss_pred HHHHHHHHHH
Q 011472 417 GVEAMKKALV 426 (485)
Q Consensus 417 A~~~~~~~~~ 426 (485)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=4.4e-12 Score=114.34 Aligned_cols=219 Identities=10% Similarity=-0.039 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCDKYTFSILLSACA-------AASDG-------EGIDKIVAMMEADRGVVLDWTVYATAASGYV 269 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (485)
++|...|++.+... +-+...|..++..+. +.|++ ++|..+|++.. ..-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-HHhCcccHHHHHHHHHHHH
Confidence 56667777777642 224456666666554 24665 67777777777 4111234556777777777
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcch-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH-hcCCHHHH
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSR-AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLL-KFDGMESA 347 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 347 (485)
+.|++++|.++|+++.+. .+.+.. +|..++..+.+.|++++|..+|+......+++...|...+.... ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777764 333333 67777777777777777777777655544444444443333222 25777777
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011472 348 EKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG-TEPN--VRTWYLMATGYLQNNQSEKGVEAMKKA 424 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 424 (485)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..+.. +.|+ ...|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777665332 45666667777777777777777777777642 3342 456666777777777777777777777
Q ss_pred HHh
Q 011472 425 LVL 427 (485)
Q Consensus 425 ~~~ 427 (485)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=9.7e-13 Score=122.72 Aligned_cols=231 Identities=9% Similarity=0.049 Sum_probs=152.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC-----cchhH
Q 011472 228 LLSACAAASDGEGIDKIVAMMEADR-GVVL----DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK-----FSRAY 297 (485)
Q Consensus 228 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~ 297 (485)
....+...|++++|...|++.. +. .-.+ ...++..+...|...|++++|+..+++........+ ...++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4445667777777777777776 32 1112 235667777777788888888888777766522211 13467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC--C----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCcccH
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLK--V----YNRGYICVISSLLKFDGMESAEKIFEEWESR----NL-CHDIRIP 366 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 366 (485)
+.+..+|...|++++|+..++......+ + ...++..+...+...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7777788888888888888774322111 1 1136777888888888888888888887762 22 2234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCc-HHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhccCCCCccCHH
Q 011472 367 NHLIDAYCRRGLLHKAETLIYKAQLRGT---EPN-VRTWYLMATGYLQNNQ---SEKGVEAMKKALVLLEAGTRWKPSKE 439 (485)
Q Consensus 367 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p~~~ 439 (485)
..+...|.+.|++++|...+++..+... .|. ...+..+...+...|+ +++|+.++++.. .......
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-------~~~~~~~ 340 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-------LYADLED 340 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------CHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------CHHHHHH
Confidence 7788888888888888888888764310 111 2335667777888888 667777666542 2222345
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 440 CLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+..+...|...|++++|.+.+++..+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667778888899999999988887754
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=4.3e-13 Score=125.15 Aligned_cols=297 Identities=7% Similarity=-0.101 Sum_probs=146.5
Q ss_pred HhcCChHHHHHHHHHHHhcC-CCCCChhHHHHH----HHHHHhhCCHHHHH-----------HHHHhhhhcCCChH----
Q 011472 94 RLYKRFSHALQISMWMTKKS-NFVLTPADVAIR----LDLIAKVQGIEQAA-----------SYFNCVPEKLKLPS---- 153 (485)
Q Consensus 94 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~A~-----------~~~~~~~~~~~~~~---- 153 (485)
.+.+++++|..+++++.+.- ....+++...+. .+...-.+.++.+. ..++.+.....+..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 56789999999988886542 112233333211 11111223333333 44444433221111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-CC----
Q 011472 154 --VYIALLNAYACAKSAEKAEIIMQQMRDR----GLVK-KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID-CD---- 221 (485)
Q Consensus 154 --~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~---- 221 (485)
.+......+...|++++|+..|++..+. +-.+ ...+|..+...+...|++++|...+++..+.... ++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 1222445566677777777777776543 1111 2345666666677777777777776666543110 11
Q ss_pred -cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHh----hccCC
Q 011472 222 -KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLD----WTVYATAASGYVKAGLSDKALAVLRKSEVL----MMHNK 292 (485)
Q Consensus 222 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 292 (485)
..+++.+..+|...|++++|...|++...-..-.++ ..++..+..+|...|++++|++.+++.... +..+.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 124455555566666666666665555411000011 124455555555556666665555555442 10022
Q ss_pred cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccHHH
Q 011472 293 FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN----LCHDIRIPNH 368 (485)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 368 (485)
...++..+...|...|++++|...++ +..+.. .+.....+..
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~----------------------------------~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHS----------------------------------KGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----------------------------------HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH----------------------------------HHHHHHHHcCCHHHHHHHHH
Confidence 23344555555555555555555554 433221 0001112344
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 369 LIDAYCRRGL---LHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 369 l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
+...|...|+ +++|..++++. +..|+ ...+..+...|...|++++|.+.|+++++.
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5555555555 45555555444 22222 345556666677777777777777766654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=1.3e-12 Score=108.17 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 222 KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 222 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
...|..+..++...|++++|++.|++.. +..+ -+..++..+..+|...|++++|+..+...... .+.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVL-KADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3445555555555555555555555555 3332 34455555555566666666666666555554 333344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHH
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHK 381 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (485)
..+...++++.+...+.......+.+...+..+...+.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55556666666666665544444455555666666666666666666666666655332 45556666666677777777
Q ss_pred HHHHHHHHHH
Q 011472 382 AETLIYKAQL 391 (485)
Q Consensus 382 a~~~~~~m~~ 391 (485)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766666
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=7.7e-12 Score=112.73 Aligned_cols=183 Identities=10% Similarity=-0.010 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCD-KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWT-VYATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 281 (485)
++|..+|++.++. +.|+ ...|..++..+.+.|++++|..+|+++. +... .+.. +|..++..+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIED-IDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hccc-cCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4444444444442 1222 2244444444444555555555555544 2111 1121 4444444445555555555555
Q ss_pred HHHHHhhccCCcchhHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C
Q 011472 282 RKSEVLMMHNKFSRAYDFVITQYA-ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN-L 359 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~ 359 (485)
++..+. .+.+...|........ ..|++++|..+|+......+.+...|..++..+.+.|++++|..+|++..+.. .
T Consensus 158 ~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 554443 1222223322222211 13555555555553333333344445555555555555555555555555542 2
Q ss_pred CC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 360 CH--DIRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 360 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 233455555555556666666666666555
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=5.3e-13 Score=127.73 Aligned_cols=211 Identities=7% Similarity=-0.096 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh-hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY-KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVA 246 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 246 (485)
+++++..+++...... .+...|..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555554443321 2455555666666666666 6666666666554221 34456666666666666666666666
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc--------CC
Q 011472 247 MMEADRGVVLDWTVYATAASGYVKA---------GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC--------GN 309 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 309 (485)
+.. +. .|+...+..+...|... |++++|++.|++..+. .+.+...|..+..+|... |+
T Consensus 162 ~al-~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GAL-TH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHH-TT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHH-hh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 666 32 24455566666666666 6666666666666655 344445666666666655 55
Q ss_pred HHHHHHHHHHHhhcCC---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 011472 310 KDDVLRVWKRYKQNLK---VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLI 386 (485)
Q Consensus 310 ~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 386 (485)
+++|+..|+......+ .+...|..+..++...|++++|.+.|++..+..+. +...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666654433333 34555555555566666666666666655554322 3344555555555555555555433
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=4.5e-13 Score=128.22 Aligned_cols=210 Identities=11% Similarity=0.029 Sum_probs=137.7
Q ss_pred HHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHH
Q 011472 135 IEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSA-EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212 (485)
Q Consensus 135 ~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (485)
++++...+++.....| +...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555556655555444 355666666777777777 7777777776665432 456677777777777777777777777
Q ss_pred HHHcCCCCCcchHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------CChH
Q 011472 213 MEEKGIDCDKYTFSILLSACAAA---------SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA--------GLSD 275 (485)
Q Consensus 213 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 275 (485)
..+. .|+...+..+..++... |++++|...|++.. +... .+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7664 34556666666666666 77777777777776 4333 4566666777777766 7777
Q ss_pred HHHHHHHHHHHhhccC---CcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHN---KFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIF 351 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 351 (485)
+|++.|++.... .+ .+...|..+..+|...|++++|...|+......+.+...+..+...+...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777665 33 455667777777777777777777777655555555566666777777777666666544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=6.8e-14 Score=126.36 Aligned_cols=240 Identities=11% Similarity=-0.003 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc------CC
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDR-------GLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK------GI 218 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 218 (485)
..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777888888888888888877652 12223455677777777777777777777776653 11
Q ss_pred CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhcC-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----
Q 011472 219 DC-DKYTFSILLSACAAASDGEGIDKIVAMMEADR-----G-VVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL---- 287 (485)
Q Consensus 219 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 287 (485)
.| ...++..+...+...|++++|...++++.... + .+.....+..+...+...|++++|++.++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12 23355556666666666666666666665210 1 1122344555566666666666666666665543
Q ss_pred --hccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 011472 288 --MMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESR-------N 358 (485)
Q Consensus 288 --~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~ 358 (485)
...+....++..+..+|...|++++|...++ ++.+. .
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------~al~~~~~~~~~~ 232 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK----------------------------------EILTRAHEREFGS 232 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH----------------------------------HHHHHHHHHHHC-
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------HHHHHHHHhcCCC
Confidence 1011122344455555555555555555555 43321 0
Q ss_pred CCCCcccHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 359 LCHDIRIPN-------HLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 359 ~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..+...... .+...+...+.+.++...+....... ..+..++..+...|...|++++|.++|+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111111 11122223344445555555555421 12356677788888888888888888888775
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=126.10 Aligned_cols=236 Identities=13% Similarity=0.024 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------hccC
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADR-------GVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL------MMHN 291 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~ 291 (485)
+..+...+...|++++|..+++++. +. ..+.....+..+...|...|++++|...++++... ...+
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444455555544444444 21 11122344445555555555555555555555443 1112
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 011472 292 KFSRAYDFVITQYAACGNKDDVLRVWKRYKQN--------LKVYNRGYICVISSLLKFDGMESAEKIFEEWESR------ 357 (485)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 357 (485)
....++..+...|...|++++|...++..... .+.....+..+...+...|++++|..+++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 22345555555666666666666665532211 1223345666777777777777777777777654
Q ss_pred CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCc-------HHHHHHHHHHHhccCCHHHHHHHHH
Q 011472 358 NLCH-DIRIPNHLIDAYCRRGLLHKAETLIYKAQLR-------GTEPN-------VRTWYLMATGYLQNNQSEKGVEAMK 422 (485)
Q Consensus 358 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~ 422 (485)
+..| ...++..+...|...|++++|...++++.+. ...+. ...+..+...+...+.+.++...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1122 2346788899999999999999999998763 11122 1222233334455566667777777
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 423 KALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.... ..+.+..++..+..+|.+.|++++|.+.+++..+.
T Consensus 269 ~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 ACKV------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCC------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7764 33345678888999999999999999999988653
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=3.1e-10 Score=111.78 Aligned_cols=370 Identities=8% Similarity=-0.044 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCC---HHHHHHH
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKS---AEKAEII 174 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~---~~~a~~~ 174 (485)
..+-+..|+..+..+ |.+...+..++..+.+.+.++.+..+|+++....|. ...|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555666666654 478899999999999999999999999999998875 5678888888888888 9999999
Q ss_pred HHHHHhCC-CCCCcchHHHHHHHHHHcCCh--------hhHHHHHHHHHHc-CC-CCCc-chHHHHHHHHH---------
Q 011472 175 MQQMRDRG-LVKKTIDYNSMMNVYYQTGNY--------KKLDSLMHEMEEK-GI-DCDK-YTFSILLSACA--------- 233 (485)
Q Consensus 175 ~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~~-g~-~p~~-~~~~~ll~~~~--------- 233 (485)
|++..... ..|++..|..-+....+.++. +.+.++|+..+.. |. .|+. ..|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 247888888877766665554 3345788876654 66 6654 46666665432
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHH----------hcCCh--------------------------
Q 011472 234 AASDGEGIDKIVAMMEADRGVVLDWTVY---ATAASGYV----------KAGLS-------------------------- 274 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~----------~~g~~-------------------------- 274 (485)
..++++.+.++|+++. ......-..+| ......+. ...++
T Consensus 206 eq~~~~~~R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2334667777777776 32111111121 11111000 00011
Q ss_pred -----------------------------------------HHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHH
Q 011472 275 -----------------------------------------DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDV 313 (485)
Q Consensus 275 -----------------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 313 (485)
+.+..+|+++... .+.....|...+..+...|+.++|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 1123344444443 222335566666666777888888
Q ss_pred H-HHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------cccHHHHHH
Q 011472 314 L-RVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL---------CHD------------IRIPNHLID 371 (485)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~ 371 (485)
. .+|+.....++.+...+...+....+.|+++.|.++|+.+.+... .|+ ..+|...+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 888866666666666677778888888889999998888876410 121 235777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh
Q 011472 372 AYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN-NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKK 450 (485)
Q Consensus 372 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 450 (485)
...+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+.+++ ..+-+...+...+.....
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk------~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK------YFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------HCCCchHHHHHHHHHHHh
Confidence 7777888899999998888751111233343333332333 458889999988887 344456666777887788
Q ss_pred cCCHhHHHHHHHHHhcCCCC---CHHHHHHHH
Q 011472 451 ERDIEGADYFIKLLTGKEII---SADLQDRLL 479 (485)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 479 (485)
.|+.+.|..+|++..+..++ ....|...+
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88999999999988887763 233454444
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=2.2e-11 Score=113.20 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC-----cchhHHH
Q 011472 229 LSACAAASDGEGIDKIVAMMEADRGVVLD----WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK-----FSRAYDF 299 (485)
Q Consensus 229 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~ 299 (485)
...+...|++++|...|++...-..-.++ ..++..+...|...|++++|...+++........+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33455677777777777776621111122 34566677777777777777777777665421111 2345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh---cCC---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCcccHHH
Q 011472 300 VITQYAACGNKDDVLRVWKRYKQ---NLK---VYNRGYICVISSLLKFDGMESAEKIFEEWES-----RNLCHDIRIPNH 368 (485)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 368 (485)
+..+|...|++++|+..++.... ... ....++..+...+...|++++|...+++..+ ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 77777777777777777773221 111 1123566777777788888888888877775 3222 2556677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---Cc-HHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhccCCCCcc-CHHH
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGTE---PN-VRTWYLMATGYLQNNQ---SEKGVEAMKKALVLLEAGTRWKP-SKEC 440 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~~---p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p-~~~~ 440 (485)
+...|.+.|++++|...+++..+.... |. ...+..+...+...++ +.+|+.++++. +..| ....
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--------~~~~~~~~~ 338 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--------NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--------CChhHHHHH
Confidence 778888888888888888887754211 11 3345556666677777 66666666652 2233 3345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 441 LAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56677778888888888888877654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=7.6e-12 Score=116.39 Aligned_cols=230 Identities=13% Similarity=0.008 Sum_probs=137.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCC-CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCC-CHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGI-DCD----KYTFSILLSACAAASDGEGIDKIVAMMEADRG----VVL-DWTVYAT 263 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~-~~~~~~~ 263 (485)
...+...|++++|...|++..+... .++ ..++..+..+|...|+++.|...+++...-.. ..+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666554310 011 23455556666666666666666666542111 011 1345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCcccHHHH
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMM----HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ-----NLKVYNRGYICV 334 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l 334 (485)
+..+|...|++++|.+.|++...... ......++..+..+|...|++++|+..++.... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 67777777777777777776655411 111224566677777777777777777774433 434345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCc-HHHHHHHHH
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNLCHDI----RIPNHLIDAYCRRGL---LHKAETLIYKAQLRGTEPN-VRTWYLMAT 406 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~ 406 (485)
...+.+.|++++|...+++..+.....+. ..+..+...|...|+ +++|...+++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 77788888888888888877764322111 224445555556666 6666666665 222233 445667788
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 011472 407 GYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 407 ~~~~~g~~~~A~~~~~~~~~ 426 (485)
.|...|++++|.+.|+++.+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999888876
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=6.8e-11 Score=109.74 Aligned_cols=304 Identities=11% Similarity=-0.002 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-CCc----ch
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI----DYNSMMNVYYQTGNYKKLDSLMHEMEEKGID-CDK----YT 224 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~ 224 (485)
........+...|++++|...+++........+.. +++.+...+...|++++|...+++..+.... ++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455566778999999999999988764222221 4667778888999999999999998764211 111 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc---CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccC---Ccch
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEAD---RGVV--L-DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN---KFSR 295 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 295 (485)
+..+...+...|++++|...+++.... .+.. | ....+..+...+...|++++|...+++........ ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 556777888999999999999888731 1221 2 23456678888999999999999999988763211 1234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCc-ccHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---cc
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQN-LKVYN-RGYIC-----VISSLLKFDGMESAEKIFEEWESRNLCHDI---RI 365 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 365 (485)
++..+...+...|++++|...++..... ..++. ..+.. .+..+...|++++|...+++.......++. ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6778888999999999999999954322 11111 12222 234467899999999999888764332111 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCcH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLR----GTEPNV-RTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKEC 440 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~ 440 (485)
+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++++.. .+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~~~--- 325 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL-------ANR--- 325 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------HHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------hcc---
Confidence 566778888999999999999887643 222222 36667778889999999999999999874 111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 441 LAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
...+..+...| +....+++.+.+..+.
T Consensus 326 -~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 326 -TGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -HCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred -ccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 11223445555 6677888888887775
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=9.2e-11 Score=108.84 Aligned_cols=236 Identities=13% Similarity=0.086 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----cchHHHHHHHHHHcCChhhHHHHHHHHHHc----CCC--CC-c
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLV-KK----TIDYNSMMNVYYQTGNYKKLDSLMHEMEEK----GID--CD-K 222 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~-~ 222 (485)
++.+...+...|++++|...+++....... ++ ..++..+...+...|++++|...+++..+. +.. |. .
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 344445555556666666655554432100 01 112344555555666666666666655442 111 11 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHH
Q 011472 223 YTFSILLSACAAASDGEGIDKIVAMMEADRGV----VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYD 298 (485)
Q Consensus 223 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 298 (485)
..+..+...+...|++++|...+++.. .... .....++..+...+...|++++|...+++.............+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 234445556666666666666666654 2111 11234555666666777777777777776655421111111111
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHhhcCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCc-c
Q 011472 299 -----FVITQYAACGNKDDVLRVWKRYKQNLKVY----NRGYICVISSLLKFDGMESAEKIFEEWESR----NLCHDI-R 364 (485)
Q Consensus 299 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~ 364 (485)
..+..+...|++++|...++......+.+ ...+..+...+...|++++|...++..... |..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 22233566777777777776443222111 113455666777778888887777776543 111111 2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
.+..+..++...|+.++|...+++...
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566777788888888888887765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.4e-11 Score=101.61 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=87.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCR 375 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (485)
.+..+...+...|++++|...++......+.+...+..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 34444444455555555555555433333334444555555555555555555555555544221 34445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHh
Q 011472 376 RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIE 455 (485)
Q Consensus 376 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 455 (485)
.|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCHH
Confidence 6666666666665555421 23455555555666666666666666666552 2234455555566666666666
Q ss_pred HHHHHHHHHhcCC
Q 011472 456 GADYFIKLLTGKE 468 (485)
Q Consensus 456 ~a~~~~~~~~~~~ 468 (485)
+|...++++.+..
T Consensus 162 ~A~~~~~~~~~~~ 174 (186)
T 3as5_A 162 EALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 6666666555443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=4e-11 Score=98.87 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
+..+...+...|++++|...++++. +... .+...+..+...+...|++++|.+.++++... .+.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 3334444455555555555555544 3222 33444455555555555555555555555443 223334444444444
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAET 384 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 384 (485)
...|++++|...++......+.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444333333333333444444444444444444444444433211 23333344444444444444444
Q ss_pred HHHHHH
Q 011472 385 LIYKAQ 390 (485)
Q Consensus 385 ~~~~m~ 390 (485)
.+++..
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.8e-11 Score=121.91 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 337 (485)
..+|+.+...|.+.|++++|++.|++..+. .+.+..++..+..+|.+.|++++|+..|+......+.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456666777777777777777777776665 444556666677777777777777776665555445555666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHH
Q 011472 338 LLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 416 (485)
+.+.|++++|.+.|++..+.... +...|+.+...|.+.|++++|...|++..+.. |+ ...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666655332 44556666666666666666666666666533 33 5556666666666666666
Q ss_pred HHHHHHHHHH
Q 011472 417 GVEAMKKALV 426 (485)
Q Consensus 417 A~~~~~~~~~ 426 (485)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=3.8e-11 Score=103.01 Aligned_cols=207 Identities=12% Similarity=-0.005 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVI 335 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 335 (485)
.|+..+......+...|++++|++.|++..... ++++...+..+..++...|++++|+..++......+.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456788888999999999999999999998873 2155567777899999999999999999977776677778888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHH
Q 011472 336 SSLLKFDGMESAEKIFEEWESRNLCHDI-------RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN---VRTWYLMA 405 (485)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li 405 (485)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|...|++..+ ..|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 9999999999999999999886443 34 3477778888889999999999998887 7776 45666676
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
..|... +...++++... ...+...|.... ....+.+++|...+++..+..|.++.+...+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~------~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPL------ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGG------TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhc------ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 666543 34455555542 223344444433 34456789999999999999998887776654
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=2.6e-11 Score=120.81 Aligned_cols=166 Identities=10% Similarity=-0.060 Sum_probs=149.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHH
Q 011472 221 DKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFV 300 (485)
Q Consensus 221 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 300 (485)
+..+|+.+..++.+.|++++|++.|++.. +... -+..+|..+..+|.+.|++++|++.|++..+. .+.+..+|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKAL-EVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 35689999999999999999999999999 5444 56888999999999999999999999999987 56677899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHH
Q 011472 301 ITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLH 380 (485)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (485)
..+|...|++++|++.|++.....+.+...|..+..++.+.|++++|.+.|++..+..+. +...+..+...|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999877777778889999999999999999999999999987544 5678899999999999999
Q ss_pred HHHHHHHHHHH
Q 011472 381 KAETLIYKAQL 391 (485)
Q Consensus 381 ~a~~~~~~m~~ 391 (485)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=5.5e-11 Score=106.16 Aligned_cols=196 Identities=9% Similarity=-0.039 Sum_probs=118.7
Q ss_pred HHhcCChHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CC--CcccHHHHHHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMM----HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNL----KV--YNRGYICVISS 337 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~li~~ 337 (485)
|...|++++|.+.|.+...... +.....+|+.+..+|...|++++|+..++...... .+ -..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555555443310 11112455555555555566666655555321110 01 12356667777
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH------HHHHHHH
Q 011472 338 LLKF-DGMESAEKIFEEWESRNLCHD-----IRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNV------RTWYLMA 405 (485)
Q Consensus 338 ~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li 405 (485)
+... |++++|...|++..+.....+ ..++..+...|.+.|++++|...|++..+....... ..|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7775 888888888877765422111 245777888999999999999999999875432221 1567778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhccCCCCccCH------HHHHHHHHHHH--hcCCHhHHHHHHHHHhcCCCC
Q 011472 406 TGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSK------ECLAACLGYYK--KERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 470 (485)
.++...|++++|+..|+++++ +.|+. ..+..++.++. ..+++++|+..|+++.+..|.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh-------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 888999999999999999874 34432 13444555554 456788888888777765543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=2.5e-11 Score=107.62 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHcCChhhHHHHHHHHHHc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHHHHH
Q 011472 198 YQTGNYKKLDSLMHEMEEK-------GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEAD------RGVVLDWTVYATA 264 (485)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 264 (485)
...|++++|+..|++..+. ..+....++..+..++...|++++|...++++... .+.+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 11112334555555666666666666666655521 1111223455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhh-----c-cCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 265 ASGYVKAGLSDKALAVLRKSEVLM-----M-HNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 265 ~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
...|...|++++|.+.|+++.... . .+....++..+...|...|++++|...++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666666666666666554431 0 11223344444445555555555555444
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=1e-10 Score=100.29 Aligned_cols=132 Identities=11% Similarity=-0.049 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHH
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSA 231 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 231 (485)
+..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.|++..+.... +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 44455555555555555555555555554433234444444555555555555555555555443211 23344444445
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 232 CAAASDGEGIDKIVAMMEADRGVVLDW-------TVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
+...|++++|...|++.. +... .+. ..|..+...+...|++++|++.|++..+
T Consensus 86 ~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGI-KAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 555555555555555544 2221 222 2233444444444444444444444443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=3.1e-11 Score=106.99 Aligned_cols=155 Identities=11% Similarity=0.021 Sum_probs=113.5
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHc------CCCC-CcchHHHHH
Q 011472 164 CAKSAEKAEIIMQQMRD-------RGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEK------GIDC-DKYTFSILL 229 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll 229 (485)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666543 222234667888999999999999999999998765 2222 345788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------hccCCcchh
Q 011472 230 SACAAASDGEGIDKIVAMMEADR------G-VVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL------MMHNKFSRA 296 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~ 296 (485)
.++...|++++|...|++.. .. . .+....++..+...|...|++++|...++++... ...+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999987 32 1 2234667888999999999999999999998775 112223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 011472 297 YDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
+..+..+|...|++++|...++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777777777777777763
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=2.9e-10 Score=101.40 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=113.8
Q ss_pred HHhcCChHHHHHHHHHHHhc---CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc----chhHHHHHHH
Q 011472 232 CAAASDGEGIDKIVAMMEAD---RGVVL-DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF----SRAYDFVITQ 303 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~ 303 (485)
|...|++++|...|++...- .+-++ ...+|+.+..+|...|++++|+..|++.........+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544310 11111 1345556666666666666666666665544211111 2456667777
Q ss_pred HHhc-CCHHHHHHHHHHHhhcCCCC------cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------cHHHHH
Q 011472 304 YAAC-GNKDDVLRVWKRYKQNLKVY------NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIR------IPNHLI 370 (485)
Q Consensus 304 ~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~ 370 (485)
|... |++++|+..|+......+.+ ..++..+...+.+.|++++|...|++..+..+..... .|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7775 77777777777432221111 2456777888888888888888888888764432221 356677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 011472 371 DAYCRRGLLHKAETLIYKAQLRGTEPNV------RTWYLMATGYL--QNNQSEKGVEAMKKAL 425 (485)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~~~ 425 (485)
.++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 7888889999999988887763 3432 12344555554 4567888888887664
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.1e-09 Score=92.21 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=79.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHH----------------HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 011472 264 AASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDF----------------VITQYAACGNKDDVLRVWKRYKQNLKVY 327 (485)
Q Consensus 264 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (485)
....+...|++++|+..|++.... .|.+...|.. +..+|.+.|++++|+..|+......+.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 444555666666666666666554 2223333333 5555566666666666666544444455
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011472 328 NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL--LHKAETLIYKAQLRGTEPNVRTWYLMA 405 (485)
Q Consensus 328 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 405 (485)
...+..+...+...|++++|...|+++.+..+. +...+..+...|...|+ .+.+...++.... ..|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 555556666666666666666666666554332 34455555555544332 2233333433322 112222233334
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 011472 406 TGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 406 ~~~~~~g~~~~A~~~~~~~~ 425 (485)
.++...|++++|+..|++++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 44445566666666666665
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2e-09 Score=94.31 Aligned_cols=186 Identities=10% Similarity=-0.051 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---hhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC----h
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLT---PADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL----P 152 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~ 152 (485)
+.+...+..+...+.+.|++++|+..|+.+.+.. |.+ +..+..+..++.+.|++++|...|+++....|+ .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3445556666666666677777777776666653 222 444555555666666666666666666655442 2
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcch
Q 011472 153 SVYIALLNAYAC--------AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT 224 (485)
Q Consensus 153 ~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 224 (485)
.++..+..++.. .|++++|+..|++..+.... +......+... ..+... -...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHH
Confidence 344455555555 56666666666665554211 11222111100 000000 0001
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHh
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVV-L-DWTVYATAASGYVKA----------GLSDKALAVLRKSEVL 287 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 287 (485)
+..+..+|.+.|++++|+..|+++. +.... + ....+..+..+|... |++++|+..|+++...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVF-DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 2345556666777777777777666 32221 1 234555566666544 6667777777776665
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.4e-09 Score=95.22 Aligned_cols=186 Identities=9% Similarity=-0.072 Sum_probs=119.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccC-CcchhH
Q 011472 222 KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLD---WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHN-KFSRAY 297 (485)
Q Consensus 222 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 297 (485)
...+-.+...+.+.|++++|...|+++. +... .+ ...+..+..+|...|++++|+..|++.....+.. ....++
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455566667778888888888888887 4332 22 5666777788888888888888888877763211 223456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 011472 298 DFVITQYAA--------CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHL 369 (485)
Q Consensus 298 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 369 (485)
..+..++.. .|++++|+..|+......+.+......+.......+. + ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------~-----------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------L-----------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-------H-----------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-------H-----------HHHHHHH
Confidence 666777777 7777777777775554444333332222111100000 0 0114557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHh
Q 011472 370 IDAYCRRGLLHKAETLIYKAQLRGTEP--NVRTWYLMATGYLQN----------NQSEKGVEAMKKALVL 427 (485)
Q Consensus 370 ~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 427 (485)
...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|+..|+++++.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 788889999999999999988754221 245667777777765 8889999999999874
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=2.1e-09 Score=83.18 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ 410 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 410 (485)
+..++..+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444555555556666666666655554322 344455555666666666666666666655431 234555566666666
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 411 NNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 411 ~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
.|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 66666666666666652 22345555666666666666666666666665443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=2.8e-09 Score=93.27 Aligned_cols=141 Identities=6% Similarity=-0.040 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 171 AEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGID-CDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|.. -+...+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 233344445555556666666666666655443321 123344455555666666666666666655
Q ss_pred hcCCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 250 ADRGVVL-----DWTVYATAASGY--VKAG--LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 250 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
+ ..| +..+...++.++ ...| ++.+|..+|+++... .+ +..+-..++.++.+.|++++|.+.++
T Consensus 164 -~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p-~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 -N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FP-TWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp -H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SC-SHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CC-CcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 223 233333343332 2222 566666666665443 11 11122222224555555555555555
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=2.7e-09 Score=82.51 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 342 (485)
.+...+...|++++|..+++++... .+.+...+..+...+...|++++|...++......+.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3444444444444444444444433 22222334444444444444444444444332222223333333444444444
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 343 GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
++++|...++++.+.... +...+..+...+.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444333211 22333334444444444444444444443
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1.1e-08 Score=89.46 Aligned_cols=78 Identities=10% Similarity=-0.090 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY 320 (485)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (485)
|+..|++.. ..+ .++..++..+..++...|++++|++++.+....+....+...+..++..+.+.|+.+.|.+.++.+
T Consensus 85 a~~~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666555 333 244444445666666666666666666665443211234455555555555555555555555544
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.5e-09 Score=89.99 Aligned_cols=179 Identities=8% Similarity=-0.054 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC 164 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~ 164 (485)
.+......+...|++++|+..|+...+.. |-++..+... .... .. ......++.+..+|.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~----------~~--~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDK----------NS--EISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCT----------TS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcc----------hh--hhhHHHHHHHHHHHHH
Confidence 34444555667777777777777776653 1222333330 0000 00 0001111224555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC--hHHHH
Q 011472 165 AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD--GEGID 242 (485)
Q Consensus 165 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~ 242 (485)
.|++++|+..|++..+.... +...|..+..++...|++++|...|++.++.... +..++..+..+|...|+ .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555555555555544322 4445555555555555555555555555553211 23344444444443332 22333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 243 KIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
..++... ...|....+.....++...|++++|+..|++..+.
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3333333 11122222233344444455555555555555543
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=4.5e-08 Score=86.59 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhccCCcchhHHHHHHHH----Hhc---CC
Q 011472 239 EGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG--LSDKALAVLRKSEVLMMHNKFSRAYDFVITQY----AAC---GN 309 (485)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 309 (485)
++|++.++.+. ..++ -+..+|+.--.++...| ++++++++++.+... .|.+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence 45666666655 3333 34445555555555555 666666666666655 333334555444444 333 55
Q ss_pred HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC------HHH
Q 011472 310 KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGME--SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL------LHK 381 (485)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 381 (485)
+++++.+++.+....+-+..+|+.-...+.+.|.++ ++.+.++++.+..+. |...|+.-...+.+.|+ +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 666666666555555556666666666666666666 777777777766554 55666655555555555 788
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH-HHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK-GVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYF 460 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 460 (485)
+++.+++++...+. |...|+.+...+.+.|+... +.++..++.+. . ..-..+...+..+...+.+.|+.++|.++
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~--~-~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL--E-KDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG--G-GTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc--c-CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88888888876543 67888888777777777444 44566655542 0 01134677888888888888999999999
Q ss_pred HHHHhc-CCCCCHHHHHHHH
Q 011472 461 IKLLTG-KEIISADLQDRLL 479 (485)
Q Consensus 461 ~~~~~~-~~~~~~~~~~~l~ 479 (485)
++.+.+ .+|+....|+...
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 998886 6788777776554
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.2e-09 Score=109.24 Aligned_cols=172 Identities=10% Similarity=-0.031 Sum_probs=106.3
Q ss_pred HhcCChHHHHHHHHHHH--------HhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 011472 269 VKAGLSDKALAVLRKSE--------VLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK 340 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 340 (485)
...|++++|++.+++.. .. .+.+...+..+..++...|++++|+..|+......+.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 55666777777777665 32 344455666666677777777777777775555555556666666777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHH
Q 011472 341 FDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEA 420 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 420 (485)
.|++++|...|+++.+..+. +...+..+..+|.+.|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665433 45566666667777777777 7777776664321 355666666677777777777777
Q ss_pred HHHHHHhhccCCCCccC-HHHHHHHHHHHHhcC
Q 011472 421 MKKALVLLEAGTRWKPS-KECLAACLGYYKKER 452 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 452 (485)
|+++++ +.|+ ...+..+..++...|
T Consensus 557 ~~~al~-------l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPP-------TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCT-------TSTTHHHHHHHHHHHTC---
T ss_pred HHhhcc-------cCcccHHHHHHHHHHHHccC
Confidence 766653 3454 344555555554433
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=5.1e-10 Score=88.73 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
|...+...|++++|...++........ +...+..+...|.+.|++++|...|++..+.... +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344455666777777777776554222 3445566777788888888888888887775422 46777777788888888
Q ss_pred HHHHHHHHHHHHHhhccCCCCcc-CHHHHHHHHHHHHhcCCHhHHHHH-HHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 414 SEKGVEAMKKALVLLEAGTRWKP-SKECLAACLGYYKKERDIEGADYF-IKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 414 ~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
+++|+..|+++++. .| +...+..+...+.+.|++++|.+. +++..+..|.++.+|.... .+.+.|
T Consensus 81 ~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVEL-------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 88888888888763 44 466777777777788877765554 5777777777777777665 554444
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=4.2e-09 Score=93.54 Aligned_cols=156 Identities=9% Similarity=-0.027 Sum_probs=67.6
Q ss_pred HHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHH-HHHHHHHHcCC
Q 011472 125 RLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYN-SMMNVYYQTGN 202 (485)
Q Consensus 125 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~ 202 (485)
....+.+.|++++|...|+++....|+ ...+..+...+.+.|++++|...+++..... |+..... .....+...++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcc
Confidence 344444444444444444444444432 3344444445555555555555554443332 2211111 11112334444
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHH
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVV-LDWTVYATAASGYVKAGLSDKALAVL 281 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 281 (485)
.++|...|++..+... .+...+..+..++...|++++|...|+++. +.... .+...+..++..|...|+.++|...|
T Consensus 201 ~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 201 DTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHL-RXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp SCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 4445555554444321 133344444445555555555555555544 22211 11344444555555555555555555
Q ss_pred HHH
Q 011472 282 RKS 284 (485)
Q Consensus 282 ~~~ 284 (485)
++.
T Consensus 279 r~a 281 (287)
T 3qou_A 279 RRQ 281 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=6e-08 Score=85.79 Aligned_cols=214 Identities=7% Similarity=-0.045 Sum_probs=111.9
Q ss_pred HHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHH----HHc---CChhh
Q 011472 136 EQAASYFNCVPEKLKL-PSVYIALLNAYACAK--SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVY----YQT---GNYKK 205 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~---~~~~~ 205 (485)
++|...++.+...+|+ ..+|+.--.++...+ +++++++.++.+...+.+ +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3555555555555554 334555555555555 666666666666655433 444455444333 333 45666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC------hHHH
Q 011472 206 LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGE--GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL------SDKA 277 (485)
Q Consensus 206 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 277 (485)
++.+++.+.+...+ +-.+|+.-.-++.+.|.++ ++++.++++. +.++ -|...|+.-...+...+. ++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 66666666654332 4444544444455555555 6666666666 4444 455555555555555444 6666
Q ss_pred HHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHH-HHHHHHhhc---CCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 278 LAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVL-RVWKRYKQN---LKVYNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
++.++++... .+.+..+|+.+...+.+.|+..... ......... .+.+...+..+...+.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 6666666665 4555566666666666666543322 233322111 123334444455555555555555555555
Q ss_pred HH
Q 011472 354 WE 355 (485)
Q Consensus 354 ~~ 355 (485)
+.
T Consensus 284 l~ 285 (306)
T 3dra_A 284 LK 285 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=3.6e-09 Score=105.88 Aligned_cols=174 Identities=10% Similarity=-0.052 Sum_probs=138.2
Q ss_pred HhcCChHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 233 AAASDGEGIDKIVAMMEAD-------RGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 233 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
...|++++|++.+++.. + ...+.+...+..+..+|...|++++|++.|+++.+. .+.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67889999999998876 1 122345677788888899999999999999998887 5556678888999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 385 (485)
..|++++|+..|+......+.+...+..+..++.+.|++++ .+.|+++.+..+. +...|..+..+|.+.|++++|...
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999997777777778888899999999999999 9999998887544 567788888999999999999999
Q ss_pred HHHHHHcCCCCc-HHHHHHHHHHHhccCC
Q 011472 386 IYKAQLRGTEPN-VRTWYLMATGYLQNNQ 413 (485)
Q Consensus 386 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 413 (485)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988774 355 5677777777766555
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=6.9e-08 Score=92.28 Aligned_cols=340 Identities=11% Similarity=-0.004 Sum_probs=212.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCC-HHHHHHHHHhhhhc-C---CChHHHHHHHHHHH----hcCC
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG-IEQAASYFNCVPEK-L---KLPSVYIALLNAYA----CAKS 167 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~-~---~~~~~~~~ll~~~~----~~~~ 167 (485)
|+++.+..+|++....- |+...+...+....+.+. .+....+|+..... | .+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 89999999999999854 588888877777776663 45677788876653 2 35677888877654 3467
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHH---c--------------CChhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 011472 168 AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQ---T--------------GNYKKLDSLMHEMEEKGIDCDKYTFSILLS 230 (485)
Q Consensus 168 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~--------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 230 (485)
.+.+..+|++.... |.. .+..+-..|.. . +.+..|..+++++...-...+...|...+.
T Consensus 105 ~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 105 IEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 88999999999874 221 12222222221 1 123334455555443200012234544444
Q ss_pred HHHhcC--C-----hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 011472 231 ACAAAS--D-----GEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ 303 (485)
Q Consensus 231 ~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (485)
--...+ - .+.+..+|+++. ... +.+...|...+..+.+.|+.++|..+|++.... |.+...+. .
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al-~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~ 251 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYIL-DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----Y 251 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHH-HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----H
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----H
Confidence 322211 1 345678999988 533 366788888888889999999999999999876 33323333 2
Q ss_pred HHhcCCHHHHH-HHHHHHhhc---------CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 011472 304 YAACGNKDDVL-RVWKRYKQN---------LKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAY 373 (485)
Q Consensus 304 ~~~~~~~~~a~-~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (485)
|....+.++.. .+.+..... .......|...+....+.++.+.|..+|+.+ +. ...+..+|...+..-
T Consensus 252 y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 252 YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIE 329 (493)
T ss_dssp HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHH
Confidence 32222222221 111111000 0111245666777777788899999999999 32 222223333222222
Q ss_pred HH-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcC
Q 011472 374 CR-RGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKER 452 (485)
Q Consensus 374 ~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 452 (485)
.. .++.+.|..+|+...+.-. -++..|...++.....|+.+.|..+|+++. .....|...+..-...|
T Consensus 330 ~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~----------k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE----------KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----------CBHHHHHHHHHHHHHHS
T ss_pred HHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCC
Confidence 22 3369999999999987532 135556777887788999999999998863 14678888888878889
Q ss_pred CHhHHHHHHHHHh
Q 011472 453 DIEGADYFIKLLT 465 (485)
Q Consensus 453 ~~~~a~~~~~~~~ 465 (485)
+.+.+..++++..
T Consensus 399 ~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 399 SMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999888776
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=3e-08 Score=84.54 Aligned_cols=205 Identities=12% Similarity=-0.027 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcc-hhHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVV-LD-WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFS-RAYDFV 300 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l 300 (485)
.+..+...+.+.|++++|...|+++. ...+. +. ...+..+..+|.+.|++++|+..|+++.+..+..+.. .++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445566777777777777777777 32221 21 3456667777777777777777777777652221110 134444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHH
Q 011472 301 ITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLH 380 (485)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (485)
..++...+.. . ...|..+...+...|++++|...|+++.+..+. +...+......
T Consensus 85 g~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l-------- 139 (225)
T 2yhc_A 85 GLTNMALDDS-----A-----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL-------- 139 (225)
T ss_dssp HHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH--------
T ss_pred HHHHHhhhhh-----h-----------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH--------
Confidence 4444332210 0 011222333344567788888888888765322 22222221110
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC----HHHHHHHHHHHHhcCCHhH
Q 011472 381 KAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS----KECLAACLGYYKKERDIEG 456 (485)
Q Consensus 381 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 456 (485)
..+...+ ......+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.++
T Consensus 140 --~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 --VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD-------YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp --HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 0001111 111234566788899999999999999974 343 2567788889999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 011472 457 ADYFIKLLTGKEIIS 471 (485)
Q Consensus 457 a~~~~~~~~~~~~~~ 471 (485)
|.+.++.+...+|.+
T Consensus 203 A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 203 AEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHhhCCCc
Confidence 999999988877744
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=2.6e-09 Score=87.24 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=93.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-HHHcC
Q 011472 124 IRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNV-YYQTG 201 (485)
Q Consensus 124 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~ 201 (485)
.....+.+.|++++|...|++.....|+ ...+..+..++.+.|++++|+..|++..... |+...+..+... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3345556666666666666666655443 5566666667777777777777776665442 222222222111 11222
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 011472 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVL-DWTVYATAASGYVKAGLSDKALAV 280 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 280 (485)
...+|...+++..+.... +...+..+..++...|++++|...|+++. +..+.+ +...+..+..++...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 334466677776664222 35566667777777777777777777776 444322 345666677777777777777777
Q ss_pred HHHHHH
Q 011472 281 LRKSEV 286 (485)
Q Consensus 281 ~~~~~~ 286 (485)
|++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=2.6e-08 Score=84.93 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011472 118 TPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLP----SVYIALLNAYACAKSAEKAEIIMQQMRDRG 182 (485)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 182 (485)
++..+......+.+.|++++|...|+++....|+. ..+..+..+|.+.|++++|+..|+++.+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 45555566677788888888888888888766542 467777788888888888888888887654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=2.2e-09 Score=87.77 Aligned_cols=160 Identities=11% Similarity=-0.027 Sum_probs=95.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH-HHhc
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS-LLKF 341 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 341 (485)
.+...+...|++++|+..|++.... .|.+...+..+..++...|++++|+..++......+ +...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 3455566666666666666666554 334445666666666666666666666664433322 33222211111 1122
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCCHHHHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP-NVRTWYLMATGYLQNNQSEKGVEA 420 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 420 (485)
++...|...+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223456667777665333 45667777777777888888888887777654322 245677777777777777777777
Q ss_pred HHHHHH
Q 011472 421 MKKALV 426 (485)
Q Consensus 421 ~~~~~~ 426 (485)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=8e-10 Score=87.58 Aligned_cols=141 Identities=9% Similarity=-0.038 Sum_probs=76.9
Q ss_pred HHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHH
Q 011472 267 GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMES 346 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 346 (485)
.+...|++++|+..+...... .+.+...+..+...|.+.|++++|++.|+......+.+..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 344445566666666555443 223334555566666666666666666665544445555566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCc-HHHHHHHHHHHhccC
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL-IYKAQLRGTEPN-VRTWYLMATGYLQNN 412 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p~-~~~~~~li~~~~~~g 412 (485)
|...|++..+..+. +...+..+...|.+.|+.++|... +++..+.. |+ +..|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 66666666655332 445566666666666666554433 45555532 32 444554444444444
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=1e-08 Score=92.11 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC----cchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----CC-cc
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNK----FSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK-----VY-NR 329 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~ 329 (485)
++..+...|.. |++++|+..|++......... ...++..+...|...|++++|+..|+......+ +. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34445555555 555555555555544311110 123455555556666666666666553221110 00 11
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~ 355 (485)
.+..++.++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444455555566666666666665
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=9.5e-09 Score=91.23 Aligned_cols=168 Identities=12% Similarity=0.022 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVI 335 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 335 (485)
.+...+..+...+...|++++|...|++.... .|.+...+..+...+...|++++|...++......+.+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 34455566777777788888888888887776 4555577777788888888888888887754433332222222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccCCH
Q 011472 336 SSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP-NVRTWYLMATGYLQNNQS 414 (485)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 414 (485)
..+...++.+.|...+++..+..+. +...+..+...|...|++++|...|.++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3355666777777788877776443 56677778888888888888888888887754221 256777888888888888
Q ss_pred HHHHHHHHHHHH
Q 011472 415 EKGVEAMKKALV 426 (485)
Q Consensus 415 ~~A~~~~~~~~~ 426 (485)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877664
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=1.8e-08 Score=90.42 Aligned_cols=201 Identities=10% Similarity=-0.046 Sum_probs=142.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEII 174 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 174 (485)
..|++++|.+++++..+... .+ .+...++++.|...|++. ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHH
Confidence 35678888888887776431 00 011146777777766543 5567788999999998
Q ss_pred HHHHHhC----CCCC-CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCC---CCC--cchHHHHHHHHHhcCChHHHHHH
Q 011472 175 MQQMRDR----GLVK-KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGI---DCD--KYTFSILLSACAAASDGEGIDKI 244 (485)
Q Consensus 175 ~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~ 244 (485)
|.+..+. +-.+ -..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8887543 1110 134688888889999999999999998765411 111 3467778888888 999999999
Q ss_pred HHHHHhcCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc----chhHHHHHHHHHhcCCHHHHHH
Q 011472 245 VAMMEADRGVVL-----DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF----SRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 245 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
|++.. +..... ...++..+...|...|++++|+..|++........+. ..++..++.++...|++++|..
T Consensus 138 ~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876 321111 1457788999999999999999999998876222211 2366777788888899999999
Q ss_pred HHHHHh
Q 011472 316 VWKRYK 321 (485)
Q Consensus 316 ~~~~~~ 321 (485)
.|+...
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999665
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=4.8e-09 Score=103.07 Aligned_cols=153 Identities=10% Similarity=-0.102 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 011472 271 AGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKI 350 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 350 (485)
.|++++|++.|++..+. .+.+...+..+...+...|++++|...++......+.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876 4556688999999999999999999999987777777788899999999999999999999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHh
Q 011472 351 FEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN---NQSEKGVEAMKKALVL 427 (485)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 427 (485)
+++..+.... +...+..+...|.+.|++++|...+++..+.... +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887543 5677888899999999999999999999886422 477888888888888 9999999999999874
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.2e-08 Score=100.13 Aligned_cols=149 Identities=9% Similarity=-0.101 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 175 (485)
|++++|++.|++..+.. +.++..+..+...+...|++++|...|++..+..|+ ...+..+..+|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455555555554432 223344444444444455555555555554444432 344444444444555555555555
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHH
Q 011472 176 QQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA---SDGEGIDKIVAMME 249 (485)
Q Consensus 176 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~ 249 (485)
++..+.... +...|..+..++.+.|++++|.+.|++..+... .+...+..+..++... |+.++|.+.+++..
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 544443221 333444444444444455555444444444321 1233344444444444 44444444444444
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=6.6e-07 Score=85.51 Aligned_cols=333 Identities=8% Similarity=-0.078 Sum_probs=203.7
Q ss_pred hcC-ChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCC-HHHHH
Q 011472 95 LYK-RFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKS-AEKAE 172 (485)
Q Consensus 95 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 172 (485)
+.| +++.|..+|+.+...- | . |+++.+..+|++.....|+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P-~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--M-S--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHH--H-T--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHC--C-C--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 456 3778888888887653 1 1 99999999999999988999999999888777663 46677
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHH----HcCChhhHHHHHHHHHHcCCCCCc--chHHHHHHHHHh----------
Q 011472 173 IIMQQMRDR-GLVK-KTIDYNSMMNVYY----QTGNYKKLDSLMHEMEEKGIDCDK--YTFSILLSACAA---------- 234 (485)
Q Consensus 173 ~~~~~m~~~-~~~p-~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~---------- 234 (485)
.+|+..... |..| +...|...+..+. ..++++.+.++|+..+.. ++.. ..|......-..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 888887753 5333 5566777666543 346788899999999973 2221 123222221111
Q ss_pred ---cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHhhccCCcchhHHHHHHHH
Q 011472 235 ---ASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAG--L-----SDKALAVLRKSEVLMMHNKFSRAYDFVITQY 304 (485)
Q Consensus 235 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (485)
.+.+..|..+++.+. ..-...+...|...+.--...+ - .+.+..+|+++.... +.....|...+..+
T Consensus 147 ~~~~~~y~~ar~~y~~~~-~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQ-PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYL 223 (493)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 112333455555554 2111123445555554432221 1 345678999988763 44457888889999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------C---CCCcccHHHHHHH
Q 011472 305 AACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRN---------L---CHDIRIPNHLIDA 372 (485)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~ 372 (485)
.+.|+.+.|..+++..... |.+...+. .+....+.++. ++.+.+.- . .....+|...+..
T Consensus 224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 9999999999999966555 44333222 22222121221 22222210 0 0012456666777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhc
Q 011472 373 YCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ-NNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKE 451 (485)
Q Consensus 373 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 451 (485)
+.+.+..+.|..+|++. .. ..++...|......-.. .++.+.|..+|+.+++. .+-+...+...++...+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~------~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK------HPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHc
Confidence 77788899999999999 32 12234444432222222 33699999999999984 322455566777878889
Q ss_pred CCHhHHHHHHHHHh
Q 011472 452 RDIEGADYFIKLLT 465 (485)
Q Consensus 452 g~~~~a~~~~~~~~ 465 (485)
|+.+.|..+|+++.
T Consensus 368 ~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 368 GDEENARALFKRLE 381 (493)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999974
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=3.9e-08 Score=82.91 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 180 (485)
+..+..|...|...+++++|+..|++..+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=5.9e-08 Score=81.78 Aligned_cols=175 Identities=9% Similarity=-0.061 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 011472 102 ALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAK----SAEKAEIIMQQ 177 (485)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~ 177 (485)
|++.|+...+.+ ++.....+...+...+++++|...|++..+. .++..+..|...|.. + ++++|+..|++
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 445555555544 4555555555555566666666666665543 245555556666655 4 66667777666
Q ss_pred HHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHHHHcCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHH
Q 011472 178 MRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKGID-CDKYTFSILLSACAA----ASDGEGIDKIVAMM 248 (485)
Q Consensus 178 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 248 (485)
..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|...|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 66554 44556666666655 56666666666666654321 013455556666665 56677777777776
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHhh
Q 011472 249 EADRGVVLDWTVYATAASGYVKA-G-----LSDKALAVLRKSEVLM 288 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 288 (485)
. +. ..+...+..|...|... | ++++|...|+...+.+
T Consensus 156 ~-~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 S-SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp H-HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred H-Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6 33 12333455566666543 2 6777777777766653
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=2.2e-08 Score=88.58 Aligned_cols=196 Identities=10% Similarity=-0.028 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHH
Q 011472 257 DWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVIS 336 (485)
Q Consensus 257 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 336 (485)
+...+..+...+...|++++|+..|++.... .+.+...|..+..+|.+.|++++|+..++......+.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556667777778888888888888887776 45556777788888888888888888888766666666777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH
Q 011472 337 SLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK 416 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 416 (485)
++...|++++|...|++..+..+. +...+...+....+. .++. -+..........+......+. .+ ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 888888888888888887765332 111222222222211 1111 122233333333444433332 22 2578888
Q ss_pred HHHHHHHHHHhhccCCCCccCHHHH-HHHHHHHHhc-CCHhHHHHHHHHHhcCC
Q 011472 417 GVEAMKKALVLLEAGTRWKPSKECL-AACLGYYKKE-RDIEGADYFIKLLTGKE 468 (485)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 468 (485)
|++.++++++ ..|+.... ..+...+.+. +.+++|.++|.++.+..
T Consensus 154 A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHE-------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGT-------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 8888888774 35554333 3333334444 66788899998877643
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=4.4e-07 Score=80.73 Aligned_cols=161 Identities=11% Similarity=-0.039 Sum_probs=90.5
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----cchHHHH
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKLP-------SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK-K----TIDYNSM 193 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l 193 (485)
+..+...|++++|..++++.....+.. ..+..+...+...+++++|+..|++..+..... + ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666777777777777766543221 123345556666677777777777776643221 2 1246677
Q ss_pred HHHHHHcCChhhHHHHHHHHHHc-----CCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHh---cCCCCCC-HHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEK-----GIDCD-KYTFSILLSACAAASDGEGIDKIVAMMEA---DRGVVLD-WTVYAT 263 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~-~~~~~~ 263 (485)
...|...|++++|...|+++.+. +..+. ..++..+..+|.+.|++++|...+++... +.+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776631 11111 12455566666666666666666655541 1111111 445555
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHHH
Q 011472 264 AASGYVKAGL-SDKALAVLRKSEV 286 (485)
Q Consensus 264 l~~~~~~~g~-~~~A~~~~~~~~~ 286 (485)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6666666663 4666666665543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=3.2e-07 Score=81.66 Aligned_cols=133 Identities=16% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHH----c-CCCCc-HHHH
Q 011472 333 CVISSLLKFDGMESAEKIFEEWESRNLCHDIR-----IPNHLIDAYCRRGLLHKAETLIYKAQL----R-GTEPN-VRTW 401 (485)
Q Consensus 333 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~ 401 (485)
.+...+...+++++|...++++.+.....+.. +++.+...|...|++++|...|+++.+ . +..+. ..++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 34555555667777777777766532221111 466777777777777777777777663 1 11111 3366
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCC-HhHHHHHHHHHh
Q 011472 402 YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERD-IEGADYFIKLLT 465 (485)
Q Consensus 402 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 465 (485)
..+...|.+.|++++|++.++++++..........-..+|..+..++.+.|+ +++|.+.+++..
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6777777788888888888777776311111111124667777777777774 577777776654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=1.3e-07 Score=84.24 Aligned_cols=130 Identities=13% Similarity=-0.014 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--cchHHHHHHHHHHcCChhhHHHHHHHHHHc-CCCCC-----cchHH
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLV---KK--TIDYNSMMNVYYQTGNYKKLDSLMHEMEEK-GIDCD-----KYTFS 226 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~ 226 (485)
+...+...|++++|+..|++..+.... +. ..+|+.+...|...|++++|...|++..+. ...|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 444555666666666666665543211 11 235666666666666777766666666521 01111 13566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc---CCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHHh
Q 011472 227 ILLSACAAASDGEGIDKIVAMMEAD---RGVVL-DWTVYATAASGYVKAGLSDKA-LAVLRKSEVL 287 (485)
Q Consensus 227 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 287 (485)
.+..+|...|++++|...+++...- .+... -..+|..+..+|.+.|++++| ...+++....
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6666777777777777777665411 11111 145667777777777777777 6666665543
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=1.4e-06 Score=77.95 Aligned_cols=67 Identities=10% Similarity=-0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 240 GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL-------SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
++++.++++. +.++ -|...|+.....+.+.++ ++++++.++++... .+.|...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I-~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 185 SELDWCNEML-RVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHH-HHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 5666666666 4444 556666666555555554 56777777777766 556667777766666655543
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=1.2e-06 Score=78.38 Aligned_cols=234 Identities=9% Similarity=-0.054 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc-C-CHHHHHHH
Q 011472 240 GIDKIVAMMEADRGVVLDWTVYATAASGYVKAG-LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC-G-NKDDVLRV 316 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 316 (485)
+|+++++.+. ..+. -+..+|+.--..+...| .+++++++++.+... .+.+..+|+.-...+... + ++++++++
T Consensus 72 ~AL~lt~~~L-~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 72 RALELTEIIV-RMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHH-HhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4444444444 3222 23333444434444444 245555555554443 233334444444444443 3 44445555
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-------HHH
Q 011472 317 WKRYKQNLKVYNRGYICVISSLLKFDGME--------SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL-------LHK 381 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~ 381 (485)
++.+....+-+..+|+.-...+.+.|.++ ++.+.++++.+..+. |...|+.....+.+.++ +++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 44444444444444444443333333333 666666666665444 55666666656555554 577
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCH--------------------HHHHHHHHHHHHhhccCCCCccCHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQS--------------------EKGVEAMKKALVLLEAGTRWKPSKECL 441 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~~~p~~~~~ 441 (485)
+++.++++...... |...|+.+-..+.+.|+. ....+...++.........-.++...+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777777765433 566776666555555543 222222222221000000113677888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHh-cCCCCCHHHHHHHH
Q 011472 442 AACLGYYKKERDIEGADYFIKLLT-GKEIISADLQDRLL 479 (485)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~ 479 (485)
..+++.|...|+.++|.++++.+. +.+|+...-|+...
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 899999999999999999999987 56777777666554
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=2.6e-08 Score=86.00 Aligned_cols=199 Identities=6% Similarity=-0.139 Sum_probs=136.3
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcchhHHHH-------HHHHHhcCCHHHHHHHHHHHhhc----CC--CC---------
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSRAYDFV-------ITQYAACGNKDDVLRVWKRYKQN----LK--VY--------- 327 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~----~~--~~--------- 327 (485)
..++.+.|.+.|.++... .|.....|..+ ...+...++..+++..+.....- .. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 467777888888887776 44455667666 45555555555555555522110 00 01
Q ss_pred ------cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--HH
Q 011472 328 ------NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN--VR 399 (485)
Q Consensus 328 ------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~ 399 (485)
......+...+...|++++|.++|+.+...+. +......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 11233466778889999999999988876543 32255566678888999999999998654421 111 33
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS--KECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDR 477 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 477 (485)
.+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++....|. +..+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDS-----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS-----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 6777888899999999999999998862 22253 346667777888999999999999999998887 777766
Q ss_pred HH
Q 011472 478 LL 479 (485)
Q Consensus 478 l~ 479 (485)
|.
T Consensus 247 L~ 248 (282)
T 4f3v_A 247 LK 248 (282)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=1.3e-07 Score=72.17 Aligned_cols=108 Identities=9% Similarity=-0.017 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAAC 444 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l 444 (485)
.+......|.+.|++++|...|++.++... .+...|..+..+|.+.|++++|++.|+++++. -+.+...|..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~l 87 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL------DSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------hhhhhHHHHHH
Confidence 355566777777788888887777776532 24677777777777888888888888877763 23356677777
Q ss_pred HHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 445 LGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 445 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
..++...|++++|++.|++..+..|.++..+..|-
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 77778888888888888888777777777666554
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=1.2e-07 Score=79.20 Aligned_cols=96 Identities=10% Similarity=-0.110 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCc--HH
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESR----NLCH--DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRG---TEPN--VR 399 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~ 399 (485)
+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++..+.. ..+. ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 344444444555555555554444332 1010 12235556666666777777777766654321 0111 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
++..+...+...|++++|.+.++++++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356666777777888888877777765
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=1.6e-07 Score=71.17 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHH
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAA 443 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 443 (485)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.+. .+.+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~ 82 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHH
Confidence 4556666777777777777777777766432 24666677777777777777777777777763 2335666777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHhcC
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIRNG 485 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g 485 (485)
+...+...|++++|...++++.+..|.++..+..+. .+.+.|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 777777777777777777777777776666666666 655544
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=4.6e-07 Score=76.28 Aligned_cols=91 Identities=10% Similarity=-0.039 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 011472 191 NSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVK 270 (485)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (485)
..+...+...|++++|...|++. +.|+...+..+..++...|++++|...|++.. .... .+...+..+..+|..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-cchHHHHHHHHHHHH
Confidence 33444444455555555544443 23344444444444445555555555554444 2221 334444444444444
Q ss_pred cCChHHHHHHHHHHHHh
Q 011472 271 AGLSDKALAVLRKSEVL 287 (485)
Q Consensus 271 ~g~~~~A~~~~~~~~~~ 287 (485)
.|++++|++.|++....
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 55555555544444443
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=4.6e-08 Score=81.73 Aligned_cols=139 Identities=12% Similarity=0.025 Sum_probs=93.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--c
Q 011472 329 RGYICVISSLLKFDGMESAEKIFEEWESR----NLC-HDIRIPNHLIDAYCRRGLLHKAETLIYKAQLR----GTEP--N 397 (485)
Q Consensus 329 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p--~ 397 (485)
.++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+. +-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34445555555555555555555555431 111 12356777888999999999999999987653 2122 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
...+..+...+...|++++|.+.++++++..........-..++..+...+...|++++|.+.+++..+.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4567788889999999999999999998641111111112344677888899999999999999887654
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.4e-06 Score=75.91 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------ccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----cc
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYN------RGYICVISSLLKFDGMESAEKIFEEWESRNLCH-D----IR 364 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~ 364 (485)
.+...+..+...|++++|.+.+.......+... ..+..+...+...|++++|...+++..+..... + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334445555566666666666553322221111 123334555666777777777777776432211 1 23
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCc-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-C
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLR-GTEPN-----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-S 437 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~ 437 (485)
+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|++.++++++.... .+... -
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHHH
Confidence 5667777788888888888888777621 01122 246777777888888888888888887764111 01111 1
Q ss_pred HHHHHHHHHHHHhcCCHhHH-HHHHHHHh
Q 011472 438 KECLAACLGYYKKERDIEGA-DYFIKLLT 465 (485)
Q Consensus 438 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 465 (485)
..+|..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46677777778888888888 66666554
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=5.2e-08 Score=86.13 Aligned_cols=195 Identities=8% Similarity=-0.077 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAA 265 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 265 (485)
+...+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++.. +... .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CCHHHHHHHH
Confidence 4456677777778888888888888887775222 55677777788888888888888888887 5443 5677778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHH
Q 011472 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGME 345 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 345 (485)
.+|...|++++|+..|++.....+..+ ..+...+....+ ...+...........+.+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 888888888888888888776632221 122222222111 111222222222333344443333322 2 257778
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 011472 346 SAEKIFEEWESRNLCHDIRIPNHLIDAYCRR-GLLHKAETLIYKAQL 391 (485)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 391 (485)
+|.+.++...+..+. +......+...+.+. +.+++|..+|.++.+
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888777776654221 233334444444444 567788888877654
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=2.2e-07 Score=78.29 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
+...+...|++++|...|++.. .|+...+..+...|...|++++|...+++..+... .+...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHccc
Confidence 3444445555555555555442 33444555555555566666666666665555321 134555555566666666
Q ss_pred HHHHHHHHHHHHHhhccCC---------CCcc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 414 SEKGVEAMKKALVLLEAGT---------RWKP-SKECLAACLGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 414 ~~~A~~~~~~~~~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+++|++.|+++++...... ...| ....+..+..++.+.|++++|.+.+++..+..+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 6666666666655200000 0111 124555666666666666666666666666555
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=2.6e-07 Score=74.15 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
..+...+...|++++|...|++.... .+.+..++..+..++...|++++|...++......+.+...+..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33444444555555555555554443 2223344444444444444444444444433333333333344444444444
Q ss_pred CCHHHHHHHHHHHHh
Q 011472 342 DGMESAEKIFEEWES 356 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~ 356 (485)
|++++|...++++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=2.1e-07 Score=70.98 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
......|.+.|++++|++.|++..+. .|.+..+|..+..+|.+.|++++|+..++......+.+...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 33444444444444444444444443 2333344444444444444444444444433333333333444444444444
Q ss_pred CCHHHHHHHHHHHHh
Q 011472 342 DGMESAEKIFEEWES 356 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~ 356 (485)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.74 E-value=7.4e-06 Score=72.89 Aligned_cols=193 Identities=10% Similarity=-0.011 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC--HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCC-HHHHHHHH
Q 011472 275 DKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN--KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDG-MESAEKIF 351 (485)
Q Consensus 275 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~ 351 (485)
++++.+++.+... .|.+..+|+.-...+...++ +++++.+++.+....+-|..+|+.-...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4444455544443 33333444444444444442 4455555554444444444445544444444444 35555555
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc------
Q 011472 352 EEWESRNLCHDIRIPNHLIDAYCRR--------------GLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQN------ 411 (485)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 411 (485)
+.+.+..+. |...|+.....+.+. +.++++.+.+++.....+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 555554433 444444444433333 4467888888888775432 566776555544444
Q ss_pred -----CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHH-----HHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 412 -----NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLG-----YYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 412 -----g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
+.++++++.++++++. .||. .|..+.. +....|..+++...+.++.+.+|....-|.-+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~-------~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL-------EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-------CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh-------Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4578999999999974 5553 3332222 223467888999999999999998777776654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-07 Score=71.96 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAAC 444 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l 444 (485)
.+..+...+...|++++|...|++..+... .+...+..+...+...|++++|++.++++++. .+.+...+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l 90 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL------EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCchHHHHHH
Confidence 345555555666666666666666555321 13555555666666666666666666666652 22245555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH-HHHh
Q 011472 445 LGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL-NNIR 483 (485)
Q Consensus 445 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~ 483 (485)
..++.+.|++++|.+.+++..+..+.+...+..+. .+.+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 66666666666666666666665555455555554 4443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=1.2e-07 Score=74.74 Aligned_cols=92 Identities=11% Similarity=-0.073 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
..+...+.+.|++++|+..|+++... .|.+...|..+..+|...|++++|+..|+......|.+...|..+..++...
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 33334444444444444444444433 2223333444444444444444444444433333333333333333333333
Q ss_pred CCHHHHHHHHHHHH
Q 011472 342 DGMESAEKIFEEWE 355 (485)
Q Consensus 342 ~~~~~a~~~~~~~~ 355 (485)
|++++|...|++..
T Consensus 118 g~~~eA~~~~~~al 131 (151)
T 3gyz_A 118 KAPLKAKECFELVI 131 (151)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 33333333333333
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=6.6e-07 Score=71.75 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (485)
.|..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++.. .... .+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHH
Confidence 445555555556666666666665555421 134445555555555556666655555555 3222 3444555555555
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 011472 269 VKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~ 287 (485)
...|++++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555544
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=5.7e-07 Score=68.00 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 261 YATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
+..+...+...|++++|.+.++++.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=4.1e-07 Score=69.46 Aligned_cols=95 Identities=17% Similarity=0.062 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYL 409 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (485)
.+..+...+...|+++.|...+++..+.... +...+..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 3444444444555555555555554443221 333444444444445555555555544444321 12344444444444
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011472 410 QNNQSEKGVEAMKKALV 426 (485)
Q Consensus 410 ~~g~~~~A~~~~~~~~~ 426 (485)
..|++++|.+.|+++++
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 45555555555544443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=4.2e-07 Score=69.43 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 33334444444444444444444333 22222333333333334444444433333
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.5e-07 Score=76.66 Aligned_cols=119 Identities=9% Similarity=0.019 Sum_probs=49.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH-HHhcCCH--
Q 011472 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ-YAACGNK-- 310 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 310 (485)
..|++++|...++... .... .+...+..+...|...|++++|...|++.... .+.+...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKI-RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHH-HHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 3444455555555444 2222 33444444555555555555555555554443 22223344444444 3344444
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 311 DDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
++|...++......+.+...+..+...+...|++++|...++++.+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444433333333333344444444444444444444444443
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=7e-07 Score=68.50 Aligned_cols=116 Identities=16% Similarity=-0.008 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 011472 187 TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAAS 266 (485)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (485)
...|..+...+...|++++|...|++..+... .+...+..+..++...|++++|.+.+++.. +... .+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CchHHHHHHHH
Confidence 34455566666666666666666666655321 134455555556666666666666666655 3222 34555555666
Q ss_pred HHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhc
Q 011472 267 GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAAC 307 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (485)
++...|++++|.+.|++.... .+.+...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 666666666666666665554 223334444444444433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.4e-07 Score=76.87 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHHcCCH--HHHH
Q 011472 307 CGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDA-YCRRGLL--HKAE 383 (485)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~ 383 (485)
.|++++|+..++......+.+...+..+...+...|++++|...|+++.+..+. +...+..+... |...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444544444333333334444444444455555555555555544443221 33334444444 4444444 4455
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 384 TLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 384 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
..+++..+.... +...+..+...+...|++++|...|+++++
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555444443211 234444444444444555555555544443
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=4.1e-07 Score=71.56 Aligned_cols=93 Identities=5% Similarity=-0.167 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQ 303 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (485)
.+..+...+.+.|++++|...|++.. ..++ .+...|..+..+|...|++++|+..|++.... .|.+...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al-~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLC-IYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHH
Confidence 44455555666666666666666665 4333 45555666666666666666666666666655 34444566666666
Q ss_pred HHhcCCHHHHHHHHHHH
Q 011472 304 YAACGNKDDVLRVWKRY 320 (485)
Q Consensus 304 ~~~~~~~~~a~~~~~~~ 320 (485)
|...|++++|...|+..
T Consensus 114 ~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666643
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=2e-07 Score=80.54 Aligned_cols=129 Identities=9% Similarity=-0.152 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHH
Q 011472 297 YDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHD--IRIPNHLIDAYC 374 (485)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 374 (485)
...+...+...|++++|.++|+......+-+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34456667777788888887775444433233 55556667777788888888777543321 111 224566677777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPN--VRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
..|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888888887774322243 335556666777788888888888888764
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=2.9e-07 Score=72.41 Aligned_cols=95 Identities=14% Similarity=-0.008 Sum_probs=47.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYL 409 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 409 (485)
.+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|...|++..+.... +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3444444555555555555555555544322 3444455555555555555555555555543211 2444455555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011472 410 QNNQSEKGVEAMKKALV 426 (485)
Q Consensus 410 ~~g~~~~A~~~~~~~~~ 426 (485)
..|++++|++.|+++++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=4e-07 Score=71.60 Aligned_cols=97 Identities=16% Similarity=-0.008 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL 338 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 338 (485)
..+..+...+...|++++|+..|++.... .+.+...|..+..+|...|++++|+..|+......+.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444555555566666666666655554 3334455555555555556666665555544444444455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 011472 339 LKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~ 357 (485)
...|++++|...|+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=8.7e-08 Score=79.80 Aligned_cols=131 Identities=15% Similarity=0.031 Sum_probs=82.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHD----------------IRIPNHLIDAYCRRGLLHKAETLIYKAQLRG 393 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 393 (485)
.+..+...+...|++++|...|++..+.... + ..++..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444555555555566666555555543221 1 2567777888888889999998888888753
Q ss_pred CCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHH-HHHHHHhcCC
Q 011472 394 TEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGAD-YFIKLLTGKE 468 (485)
Q Consensus 394 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~ 468 (485)
. .+...+..+..+|...|++++|++.|+++++. .+-+...+..+..++...++.+++. ..+..+...+
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 25777888888888899999999999888863 2235667777777777777777766 5555555444
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=1.7e-06 Score=64.60 Aligned_cols=109 Identities=13% Similarity=-0.042 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHH
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAA 443 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 443 (485)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++++. .+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~ 77 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------CcccHHHHHH
Confidence 3456667777778888888888888776532 25667777777788888888888888888763 2335667777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
+..++...|++++|.+.+++..+..|.++..+..+.
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 777888888888888888888887777666665554
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=1.1e-06 Score=79.83 Aligned_cols=87 Identities=8% Similarity=-0.127 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 011472 295 RAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYC 374 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (485)
.+|..+..+|.+.|++++|+..++......+.+...+..+..++...|++++|...|+++.+..+. +...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 344444444444444444444444333333334444444444444444444444444444443221 2333444444444
Q ss_pred HcCCHHHH
Q 011472 375 RRGLLHKA 382 (485)
Q Consensus 375 ~~g~~~~a 382 (485)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=8e-05 Score=66.24 Aligned_cols=187 Identities=4% Similarity=-0.100 Sum_probs=110.8
Q ss_pred hcCChH-HHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCC----------HHHHHHHHHhhhhcCC-ChHHHHHHHHHH
Q 011472 95 LYKRFS-HALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG----------IEQAASYFNCVPEKLK-LPSVYIALLNAY 162 (485)
Q Consensus 95 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~-~~~~~~~ll~~~ 162 (485)
+.|.+. +|+++++.++..+ |-....+...-.++...+. ++++..+++.+...+| +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445544 6888888887754 2333444444333333332 5677777777777665 456677766666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC-hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhc----
Q 011472 163 ACAK--SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN-YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAA---- 235 (485)
Q Consensus 163 ~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 235 (485)
.+.+ .+++++.+++++.+.... |..+|+.-.-.+...|. ++++++.++.+++..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 6666 377888888888776554 66677766666667776 47778888877776443 555666555544443
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHh
Q 011472 236 ----------SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA-----------GLSDKALAVLRKSEVL 287 (485)
Q Consensus 236 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~ 287 (485)
+.++++++.++... ...+ -|..+|+-+--.+.+. +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai-~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAF-FTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 23455666666555 3333 4555554433333333 2345555555555544
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=1.2e-06 Score=64.77 Aligned_cols=102 Identities=11% Similarity=-0.018 Sum_probs=77.4
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc--CHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP--SKE 439 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p--~~~ 439 (485)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++++++. .+. +..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~ 77 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV------IEDEYNKD 77 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------SCCTTCHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccchHH
Confidence 455667777778888888888888888877542 24667777888888888888888888888862 233 567
Q ss_pred HHHHHHHHHHhc-CCHhHHHHHHHHHhcCCCC
Q 011472 440 CLAACLGYYKKE-RDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 440 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~ 470 (485)
.+..+..++.+. |++++|.+.++++.+..|.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777888888888 8888888888888877764
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.9e-06 Score=65.59 Aligned_cols=96 Identities=9% Similarity=-0.061 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACL 445 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 445 (485)
+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|++.++++++. .+.+...|..+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg 79 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEK------DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHH
Confidence 33344445555555555555555544321 13444555555555555555555555555542 112344455555
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
.++...|++++|...|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 55555555555555555555544
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.6e-06 Score=78.74 Aligned_cols=94 Identities=9% Similarity=-0.047 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL 338 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 338 (485)
..|..+..+|.+.|++++|+..|++.... .+.+..++..+..+|...|++++|+..|+......+.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555666666666666666666666554 3444455666666666666666666666654444444555555666666
Q ss_pred HhcCCHHHH-HHHHHHH
Q 011472 339 LKFDGMESA-EKIFEEW 354 (485)
Q Consensus 339 ~~~~~~~~a-~~~~~~~ 354 (485)
...|+.+++ ...++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666555 3344444
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=8.8e-08 Score=79.79 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.+..+...+...|++++|+..|++....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555555555555543
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=1.5e-06 Score=66.29 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCc----HHHHHHH
Q 011472 331 YICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT--EPN----VRTWYLM 404 (485)
Q Consensus 331 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 404 (485)
+..++..+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555666666666666666666654332 445566666666666666666666666654211 011 2345556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHh
Q 011472 405 ATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 405 i~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
..++...|++++|++.|++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66677777777777777777653
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.6e-06 Score=65.98 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=36.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD 342 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 342 (485)
.+...+.+.|++++|+..|++.... .+.+...|..+..+|.+.|++++|+..++......+.+...+..+..++...|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 3344444444444444444444433 22233344444444444444444444444333333333333334444444444
Q ss_pred CHHHHHHHHHHHH
Q 011472 343 GMESAEKIFEEWE 355 (485)
Q Consensus 343 ~~~~a~~~~~~~~ 355 (485)
++++|...|++..
T Consensus 87 ~~~~A~~~~~~al 99 (126)
T 3upv_A 87 EYASALETLDAAR 99 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444333
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=1.9e-06 Score=67.20 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHh
Q 011472 261 YATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLK 340 (485)
Q Consensus 261 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 340 (485)
+..+...+.+.|++++|+..|++.... .|.+...|..+..+|...|++++|+..|+......+.+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334444555555555555555555544 333444555555555555555555555554444444444455555555555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 011472 341 FDGMESAEKIFEEWESR 357 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~ 357 (485)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.8e-06 Score=66.51 Aligned_cols=108 Identities=13% Similarity=-0.078 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHH
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKE 439 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 439 (485)
..+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|++.++++++. .+.+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 100 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSCCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------CccCHH
Confidence 345555666666666777776666666532 44 455666666677777777777777776652 222455
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 440 CLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
.+..+..++...|++++|...+++..+..|.++..+..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 6666666677777777777777777766666655555444
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=3.2e-06 Score=63.02 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhc
Q 011472 262 ATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKF 341 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 341 (485)
..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33444444444444444444444433 2222333444444444444444444444433222222333333333344444
Q ss_pred CCHHHHHHHHHHHH
Q 011472 342 DGMESAEKIFEEWE 355 (485)
Q Consensus 342 ~~~~~a~~~~~~~~ 355 (485)
|++++|...++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444333
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=3e-06 Score=66.05 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011472 189 DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY 268 (485)
Q Consensus 189 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (485)
.+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...|++.. ..+. .+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGA-LMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCC-CCcHHHHHHHHHH
Confidence 344444445555555555555555544321 133344444455555555555555555554 3222 3334444455555
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 011472 269 VKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~ 287 (485)
...|++++|.+.|+.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554444
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=4e-06 Score=67.18 Aligned_cols=98 Identities=11% Similarity=-0.049 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 011472 187 TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAAS 266 (485)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (485)
...|..+...+.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..|++.. +... .+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CCHHHHHHHHH
Confidence 334555555666666666666666666554221 44455666666666666666666666666 4333 34566666777
Q ss_pred HHHhcCChHHHHHHHHHHHHh
Q 011472 267 GYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~ 287 (485)
+|...|++++|+..|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776665
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.43 E-value=3e-06 Score=63.88 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc-CHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP-SKECLAA 443 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p-~~~~~~~ 443 (485)
.+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|+++++. .| +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHH
Confidence 4555667777888888888888888775422 5777777778888888888888888888763 34 5667777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 444 CLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
+..++.+.|++++|...+++..+..|.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 777888888888888888888776653
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.3e-05 Score=75.46 Aligned_cols=165 Identities=7% Similarity=-0.128 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCc----chHHHHHHHHHHcCChhhHHHHHHHHHHc----CCCCC-cch
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRG-LVKKT----IDYNSMMNVYYQTGNYKKLDSLMHEMEEK----GIDCD-KYT 224 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~ 224 (485)
+..+...|...|++++|.+.+.++...- ..++. ...+.+...+...|++++|.+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777654321 01111 11222333334456777777777766542 22222 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc-----ch
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGV----VLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF-----SR 295 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~ 295 (485)
+..+...+...|++++|..+++++.....- +....++..++..|...|++++|..++++........++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777788888888888887776522111 112456777888888888888888888877654211111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
.+..+...+...+++++|...|..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456666677778888888877763
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=8.2e-06 Score=76.92 Aligned_cols=200 Identities=11% Similarity=-0.059 Sum_probs=112.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccCCcc---------------hhHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCc
Q 011472 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFS---------------RAYDFVITQYAACGNKDDVLRVWKRYKQN--LKVYN 328 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 328 (485)
..+.+.|++++|++.|..+.+......+. .++..++..|...|++++|.+.+...... ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 33445555666666555555442111111 12555666667777777776666632211 11111
Q ss_pred ----ccHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--C
Q 011472 329 ----RGYICVISSLLKFDGMESAEKIFEEWESR----NLCHD-IRIPNHLIDAYCRRGLLHKAETLIYKAQLR--GT--E 395 (485)
Q Consensus 329 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~--~ 395 (485)
.+.+.+...+...|+.+.+..+++..... +..+. ..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12233333444567777777777766532 11111 235667778888888888888888877542 11 1
Q ss_pred Cc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC--HHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 396 PN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS--KECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 396 p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
|. ..++..++..|...|++++|..+++++...... ....|. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS-IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 456777788888888888888888877653100 011111 23455556667778888888777666543
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.42 E-value=1.6e-06 Score=69.01 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRG----TEP-NVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKE 439 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 439 (485)
++..+...|...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.++++++.............
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 45555666666666666666666654321 000 1345566666777777777777777777653111111111234
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 440 CLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666677777788777777776554
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=2.3e-06 Score=63.16 Aligned_cols=91 Identities=3% Similarity=-0.124 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCC--cchhHHHHH
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNK--FSRAYDFVI 301 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~ 301 (485)
.+..+...+...|++++|...|++.. +... .+...+..+..++...|++++|.+.|++..+. .+. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAI-QLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 33444444444455555555554444 2222 23344444444444444444444444444443 222 233444444
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 011472 302 TQYAAC-GNKDDVLRVWK 318 (485)
Q Consensus 302 ~~~~~~-~~~~~a~~~~~ 318 (485)
.++... |++++|.+.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 444444 44444444444
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=5.7e-06 Score=66.23 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSL 338 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 338 (485)
..+..+...+...|++++|++.|++.... .+.+...|..+..+|...|++++|+..|+......+.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444555555555555555555555544 3333445555555555555555555555544443444444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 011472 339 LKFDGMESAEKIFEEWESR 357 (485)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~ 357 (485)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=4e-06 Score=63.85 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
.+..+...+.+.|++++|++.|++..+. .|.+..+|..+..+|...|++++|+..++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 4455666666666666666666666654 344445566666666666666666666653
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=8.8e-06 Score=61.92 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHH
Q 011472 334 VISSLLKFDGMESAEKIFEEWESRNLCHDI---RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN----VRTWYLMAT 406 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~ 406 (485)
+...+...|++++|...|+.+.+..+. +. ..+..+..++.+.|++++|...|++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344444455555555555554443221 11 233444444444555555555555444432 22 333444444
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 011472 407 GYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 407 ~~~~~g~~~~A~~~~~~~~~ 426 (485)
++...|++++|...|+++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555554443
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=8.3e-06 Score=62.84 Aligned_cols=96 Identities=8% Similarity=-0.045 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISS 337 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 337 (485)
...+..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 334444444444444444444444444443 222333444444444444444444444443333233333334444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011472 338 LLKFDGMESAEKIFEEWE 355 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~ 355 (485)
+...|++++|...|+++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.5e-05 Score=62.28 Aligned_cols=58 Identities=16% Similarity=-0.037 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
..+..+..+|...|++++|+..+++.... .+.+...+..+..++...|++++|...|+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 123 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQALEKLGRLDQAVLDLQ 123 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344444444444444444444444433 22223334444444444444444444444
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=6.8e-06 Score=63.35 Aligned_cols=99 Identities=8% Similarity=-0.061 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAA 265 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 265 (485)
+...|..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++.. .... .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-hhHHHHHHHH
Confidence 445566666666666666666666666655422 134455556666666666666666666665 3332 3455556666
Q ss_pred HHHHhcCChHHHHHHHHHHHHh
Q 011472 266 SGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.+|...|++++|+..|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666665554
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=6.5e-06 Score=62.64 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=48.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCc----HHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGT--EPN----VRTWYL 403 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 403 (485)
.+..+...+...|+++.|...+++..+.... +...+..+...|...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555555555555555555555544321 344445555555555555555555555544321 011 444555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 011472 404 MATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 404 li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+...+...|++++|.+.|+++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=4.7e-06 Score=63.42 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 62 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCE 62 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444444444444444444444433 22222333444444444444444444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=6e-06 Score=62.19 Aligned_cols=84 Identities=7% Similarity=-0.031 Sum_probs=31.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
.+.+.|++++|...|++.. .... .+...|..+..++...|++++|+..|++.... .|.+...+..+..++...|++
T Consensus 26 ~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVC-QKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3334444444444444443 2221 23333333444444444444444444443333 222223333333333333333
Q ss_pred HHHHHHHH
Q 011472 311 DDVLRVWK 318 (485)
Q Consensus 311 ~~a~~~~~ 318 (485)
++|+..++
T Consensus 102 ~~A~~~~~ 109 (121)
T 1hxi_A 102 NAALASLR 109 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.5e-05 Score=60.53 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=40.6
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHHc
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLP----SVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKK---TIDYNSMMNVYYQT 200 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~ 200 (485)
.+...|++++|...|+++....|+. .++..+..++.+.|++++|+..|++..+.... + ...+..+..++...
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHc
Confidence 3344444444444444444433332 24444445555555555555555555443211 1 23344444555555
Q ss_pred CChhhHHHHHHHHHH
Q 011472 201 GNYKKLDSLMHEMEE 215 (485)
Q Consensus 201 ~~~~~a~~~~~~m~~ 215 (485)
|++++|...|+++.+
T Consensus 90 g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 90 GKNTEAQQTLQQVAT 104 (129)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=1.2e-05 Score=63.69 Aligned_cols=27 Identities=19% Similarity=-0.064 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 180 (485)
++..+...+...|++++|+..+++..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=1.2e-05 Score=76.54 Aligned_cols=117 Identities=7% Similarity=-0.135 Sum_probs=52.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCCHHH
Q 011472 92 KFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACAKSAEK 170 (485)
Q Consensus 92 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 170 (485)
.+.+.|++++|++.|++..+.. +.++..+..+..++.+.|++++|...+++..+..|+ ..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555443 223444444444555555555555555555444432 3444445555555555555
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHH--HHHcCChhhHHHHHH
Q 011472 171 AEIIMQQMRDRGLVKKTIDYNSMMNV--YYQTGNYKKLDSLMH 211 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 211 (485)
|++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555554443211 22333333333 444455555555444
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=2.3e-05 Score=74.35 Aligned_cols=124 Identities=12% Similarity=0.004 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCc-------------chhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKF-------------SRAYDFVITQYAACGNKDDVLRVWKRYKQNLK 325 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 325 (485)
..+..+...|.+.|++++|+..|++.....+..+. ..+|..+..+|.+.|++++|+..++......+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555666666666666666666666654211110 24555555555555555555555554444444
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHH
Q 011472 326 VYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAE 383 (485)
Q Consensus 326 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 383 (485)
.+...|..+..++...|++++|...|+++.+..+. +...+..+..++.+.++.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554322 3444555555555555554443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=3.8e-06 Score=62.89 Aligned_cols=86 Identities=10% Similarity=-0.061 Sum_probs=45.5
Q ss_pred cCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011472 200 TGNYKKLDSLMHEMEEKGI--DCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 277 (485)
.|++++|+..|++.++.+. +-+...+..+..++...|++++|...|++.. +..+ -+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3555566666666555321 1123345555556666666666666666665 3332 3455555566666666666666
Q ss_pred HHHHHHHHHh
Q 011472 278 LAVLRKSEVL 287 (485)
Q Consensus 278 ~~~~~~~~~~ 287 (485)
+..|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665555
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=5.2e-06 Score=79.15 Aligned_cols=116 Identities=15% Similarity=0.034 Sum_probs=50.7
Q ss_pred HhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHH
Q 011472 269 VKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAE 348 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 348 (485)
.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|++++|+..++......+.+...+..+..++...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444443 23333444444444445555555555444443333334444445555555555555555
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH--HHHcCCHHHHHHHHH
Q 011472 349 KIFEEWESRNLCHDIRIPNHLIDA--YCRRGLLHKAETLIY 387 (485)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 387 (485)
+.++++.+..+. +...+..+..+ +.+.|++++|...++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555443221 22333333333 444455555555554
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=8.8e-05 Score=72.04 Aligned_cols=171 Identities=6% Similarity=-0.048 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhhcCCC-hHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcC--C
Q 011472 136 EQAASYFNCVPEKLKL-PSVYIALLNAYACAKS----------AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTG--N 202 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 202 (485)
++|...++++...+|+ ..+|+.--.++...|+ ++++++.++++.+...+ +..+|+.-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 3444445554444443 2334444444444444 55666666666555443 4555555555555555 4
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----------
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS-DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKA---------- 271 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 271 (485)
++++++.++++.+...+ |..+|+.-..++.+.| .++++++.++++. +.++ -+...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTC-CCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCC-CCccHHHHHHHHHHhhcccccccccc
Confidence 46666666666655333 4445555445555555 5666666666666 4444 4556665555554442
Q ss_pred ----CChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHH
Q 011472 272 ----GLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDD 312 (485)
Q Consensus 272 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (485)
+.++++++.+++.... .|.+..+|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578899999888877 66677888888888877776444
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=2.9e-06 Score=63.53 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHH
Q 011472 341 FDGMESAEKIFEEWESRNL--CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 418 (485)
.|++++|...|++..+.+. +.+...+..+...|...|++++|...|++..+.... +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4555566666666655431 113344555555566666666666666665554321 2455555555566666666666
Q ss_pred HHHHHHHH
Q 011472 419 EAMKKALV 426 (485)
Q Consensus 419 ~~~~~~~~ 426 (485)
+.++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=2.1e-05 Score=72.19 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
.+..+...+.+.|++++|++.|++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355567777777888888887777765
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=2.6e-05 Score=62.17 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CC---------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESR--------NL---------CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 392 (485)
.+......+.+.|++++|...|.+..+. .+ +.+..+|..+..+|.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3555666666667777777666666543 00 001234444555555555555555555555554
Q ss_pred CCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 393 GTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 393 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
... +...|..+..+|...|++++|...|+++++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 211 244555555555555555555555555554
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=3.8e-05 Score=72.81 Aligned_cols=128 Identities=7% Similarity=-0.090 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 011472 224 TFSILLSACAAASDGEGIDKIVAMMEADRGVVLD--------------WTVYATAASGYVKAGLSDKALAVLRKSEVLMM 289 (485)
Q Consensus 224 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 289 (485)
.+..+...+.+.|+++.|...|++.. +...... ...|..+..+|.+.|++++|+..++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 44455555566666666666666555 2221111 466777888888888888888888888776
Q ss_pred cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHH-HHHHH
Q 011472 290 HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEK-IFEEW 354 (485)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~ 354 (485)
.+.+..+|..+..+|...|++++|+..|+......+.+...+..+..++.+.++.+++.+ .+..|
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888887666666666777777777777777766653 34444
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=0.0001 Score=57.33 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCc-HHHH----HHHHHHHhccCCHHHHHHHHHHHHHhhccCCCC
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLR-----GTEPN-VRTW----YLMATGYLQNNQSEKGVEAMKKALVLLEAGTRW 434 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 434 (485)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|+++++......++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 7777888888888888888888888774 11465 5677 888888999999999999999998865555666
Q ss_pred ccCHHHHHHHH
Q 011472 435 KPSKECLAACL 445 (485)
Q Consensus 435 ~p~~~~~~~l~ 445 (485)
.+........+
T Consensus 139 ~~~~~~~~~~~ 149 (159)
T 2hr2_A 139 TPGKERMMEVA 149 (159)
T ss_dssp CTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=4.4e-05 Score=59.44 Aligned_cols=61 Identities=13% Similarity=-0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCcchH----HHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 154 VYIALLNAYACAKSAEKAEIIMQQMRDR-------GLVKKTIDY----NSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 154 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
+|+.+..++.+.|++++|+..+++..+. ... +...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666777777777777777777766654 322 33455 6666666666666666666666654
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=0.00012 Score=71.18 Aligned_cols=115 Identities=3% Similarity=-0.103 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcC-
Q 011472 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGN----------KDDVLRVWKRYKQNLKVYNRGYICVISSLLKFD- 342 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 342 (485)
.++|++.++++... .|.+..+|+.--.++...|+ ++++++.++.+....+-+..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 34556666666655 34444555555444444444 444444444444444444444444444444444
Q ss_pred -CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 011472 343 -GMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG-LLHKAETLIYKAQL 391 (485)
Q Consensus 343 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 391 (485)
+++++.+.++++.+..++ |...|+.-...+.+.| .++++.+.++++.+
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 334444444444444333 3344444444444444 44444444444444
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=3.3e-05 Score=70.81 Aligned_cols=25 Identities=8% Similarity=-0.148 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
+..+...+.+.|++++|+..|++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl 250 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVL 250 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=5.9e-05 Score=60.05 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
..|..+..+|.+.|++++|+..+++.... .+.+..+|..+..+|...|++++|...|+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 34444555555555555555555555544 333344555555555555555555555553
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.1e-05 Score=71.34 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY 320 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (485)
.|..+..+|.+.|++++|+..+++.... .+.+..+|..+..+|...|++++|...|+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555555444 3333344555555555555555555555543
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.97 E-value=6.1e-05 Score=52.95 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHH
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDR 477 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 477 (485)
...+..+...+...|++++|+..|+++++. .+.+...+..+..++.+.|++++|...+++..+..|.++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 567777888888899999999999998873 23366778888888999999999999999998888888888888
Q ss_pred HH-HHHhcC
Q 011472 478 LL-NNIRNG 485 (485)
Q Consensus 478 l~-~~~~~g 485 (485)
+. .+.+.|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 87 777655
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.95 E-value=2.1e-05 Score=71.28 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWES 356 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 356 (485)
+|..+..+|.+.|++++|+..++......+.+...|..+..++...|++++|...|+++.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444445555555555554433333333444444444444444444444444444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00033 Score=53.88 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHh----cCCHHHHH
Q 011472 97 KRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYAC----AKSAEKAE 172 (485)
Q Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 172 (485)
+++++|++.|+...+.+ ++... +...|...+.+++|.++|++..+. .++..+..|...|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34566666666666655 22222 444444555555566666665554 344555555555555 55666666
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHH----cCChhhHHHHHHHHHHcC
Q 011472 173 IIMQQMRDRGLVKKTIDYNSMMNVYYQ----TGNYKKLDSLMHEMEEKG 217 (485)
Q Consensus 173 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g 217 (485)
..|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 44455555555555 555556666655555543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00013 Score=53.45 Aligned_cols=90 Identities=7% Similarity=0.016 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccC-----
Q 011472 364 RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPS----- 437 (485)
Q Consensus 364 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~----- 437 (485)
..+..+...+...|++++|...|++..+ ..|+ ...|..+..++...|++++|++.++++++ +.|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~ 75 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-------YTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------SCSSTTSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCccHHH
Confidence 3455555666666666666666666665 5543 45555666666666666666666666663 2333
Q ss_pred --HHHHHHHHHHHHhcCCHhHHHHHHH
Q 011472 438 --KECLAACLGYYKKERDIEGADYFIK 462 (485)
Q Consensus 438 --~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (485)
...+..+..++...|+.+.|...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 3344444455555555555544433
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00035 Score=53.74 Aligned_cols=113 Identities=11% Similarity=-0.129 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCCHHHH
Q 011472 342 DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQ----NNQSEKG 417 (485)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 417 (485)
+++++|.+.|++..+.|. .... +...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356777777777777652 2222 6666666667777777777777753 56666667777766 6778888
Q ss_pred HHHHHHHHHhhccCCCCccCHHHHHHHHHHHHh----cCCHhHHHHHHHHHhcCCCC
Q 011472 418 VEAMKKALVLLEAGTRWKPSKECLAACLGYYKK----ERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 470 (485)
.++|+++.+. -+...+..|...|.. .++.++|.+.|++..+.|.+
T Consensus 81 ~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 8888887762 345666666777776 77788888888877777653
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=0.00016 Score=53.57 Aligned_cols=80 Identities=9% Similarity=-0.090 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 205 KLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
+|+..|++..+... .+...+..+..++...|++++|...|++.. .... .+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555544321 133445555555555666666666665555 3232 34455555566666666666666666655
Q ss_pred HHh
Q 011472 285 EVL 287 (485)
Q Consensus 285 ~~~ 287 (485)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=4.9e-05 Score=59.05 Aligned_cols=95 Identities=9% Similarity=-0.067 Sum_probs=47.1
Q ss_pred hCCHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc
Q 011472 132 VQGIEQAASYFNCVPEKLK-LPSVYIALLNAYACAKSA----------EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT 200 (485)
Q Consensus 132 ~~~~~~A~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 200 (485)
.+.+++|.+.++...+..| +...|+.+..++...+++ ++|+..|++..+.... +..+|+.+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3444555555555444443 244444444444444432 3555555555554332 344555555555544
Q ss_pred -----------CChhhHHHHHHHHHHcCCCCCcchHHHHH
Q 011472 201 -----------GNYKKLDSLMHEMEEKGIDCDKYTFSILL 229 (485)
Q Consensus 201 -----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 229 (485)
|++++|++.|++.++ +.|+...|...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 356666666666665 345544444333
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00015 Score=68.65 Aligned_cols=62 Identities=5% Similarity=-0.088 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-CC-cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESR-----NLC-HD-IRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
+++.|...|...|++++|+.++++..+. |.. |+ ..+.+.+..++...+.+++|+.++.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444321 111 11 12233444555556666666666666554
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00026 Score=67.11 Aligned_cols=130 Identities=9% Similarity=-0.004 Sum_probs=89.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhc---CCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCc-HHHHH
Q 011472 337 SLLKFDGMESAEKIFEEWESR---NLCHD----IRIPNHLIDAYCRRGLLHKAETLIYKAQL-----RGT-EPN-VRTWY 402 (485)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~ 402 (485)
.+...|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++ .|. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888777643 12222 34578888888888999998888888753 221 223 56788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhccCCC-CccCH-HHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALVLLEAGTR-WKPSK-ECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.|...|...|++++|+.+++++++......| -.|+. .+...+-.++...|.+++|+..+.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999998888875332222 12333 3445555677788889999988888765
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00012 Score=54.20 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 346 SAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
.|...+++..+..+. +...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666554332 455666667777777777777777777766432 135566667777777777777777777776
Q ss_pred H
Q 011472 426 V 426 (485)
Q Consensus 426 ~ 426 (485)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00013 Score=53.52 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011472 260 VYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRY 320 (485)
Q Consensus 260 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (485)
.+..+...+...|++++|++.|++.... .+.+...+..+..++...|++++|+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444444455555555555544443 2233344444444444444444444444433
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00038 Score=48.68 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
+..+...+...|++++|...|++.. +... .+...+..+..++...|++++|...|++...
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKAL-ELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444 2221 2333444444444444444444444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.0002 Score=55.56 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 011472 340 KFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL----------LHKAETLIYKAQLRGTEPN-VRTWYLMATGY 408 (485)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~ 408 (485)
+.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++.. |+ ...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 334456666666666655433 55555555555555544 458888888888744 44 67778888888
Q ss_pred hcc-----------CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHH
Q 011472 409 LQN-----------NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGY 447 (485)
Q Consensus 409 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 447 (485)
... |++++|++.|+++++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-------~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE-------QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 766 4789999999999864 7776666555543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.0004 Score=49.86 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=41.0
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|++.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566666666777777777777776664321 355666666677777777777777766665
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00051 Score=49.31 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=21.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 227 ILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 227 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
.+..++...|++++|+..|++.. +.+. .+...|..+..+|...|++++|++.|++.
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELV-ETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333444444444444444433 2221 22233333444444444444444444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.004 Score=55.65 Aligned_cols=62 Identities=6% Similarity=-0.072 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555566666666666666653 455455555556666666666666666665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.32 E-value=0.013 Score=52.35 Aligned_cols=74 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHH
Q 011472 360 CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKE 439 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 439 (485)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++... .|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-------~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-------RPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCcC
Confidence 3456667777666777788888888888888865 77777777777888888888888888888854 67766
Q ss_pred HHH
Q 011472 440 CLA 442 (485)
Q Consensus 440 ~~~ 442 (485)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.03 E-value=0.0039 Score=58.03 Aligned_cols=91 Identities=9% Similarity=-0.062 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCC-CccCH-HHHHHHHH
Q 011472 376 RGLLHKAETLIYKAQLR---GTEPN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTR-WKPSK-ECLAACLG 446 (485)
Q Consensus 376 ~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~~ 446 (485)
.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.+++++++......| ..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47788888888877642 12233 567888888899999999999998888875221112 23333 56888888
Q ss_pred HHHhcCCHhHHHHHHHHHhc
Q 011472 447 YYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~ 466 (485)
.|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999988887754
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.99 E-value=0.0015 Score=46.58 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=28.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWT-VYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
..+.+.|++++|...|++.. +... .+.. .+..+..+|...|++++|++.|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFL-QTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHH-HHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555 3222 2334 4555555555555555555555555544
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.069 Score=54.52 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=22.6
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 198 YQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445555555543222 133455555555555555555555555554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0081 Score=55.92 Aligned_cols=97 Identities=5% Similarity=-0.119 Sum_probs=66.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCCc----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCC-CCccCH-HH
Q 011472 370 IDAYCRRGLLHKAETLIYKAQLRG---TEPN----VRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGT-RWKPSK-EC 440 (485)
Q Consensus 370 ~~~~~~~g~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~p~~-~~ 440 (485)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+...|...|++++|+.+++++++...... ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888776431 2232 45778888888888888888888888876422111 222333 56
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 441 LAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888889998888888877654
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.82 E-value=0.025 Score=39.57 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 011472 256 LDWTVYATAASGYVKAGL---SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKV 326 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (485)
.+...+..+..++...++ .++|..++++.... .+.+..+...+...+.+.|++++|+..|+.+....++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445555555555544433 56677777666665 5555566666666666667777776666655544444
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.82 E-value=0.005 Score=43.66 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HH-HHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 369 LIDAYCRRGLLHKAETLIYKAQLRGTEPN-VR-TWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 369 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
....+.+.|++++|...+++..+ ..|+ .. .|..+..+|...|++++|++.|+++++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677777777777777766 5554 45 6666777777777777777777777753
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.014 Score=41.96 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=32.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhccCCC-CccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHH
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKALVLLEAGTR-WKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 473 (485)
+..+...+...|+++.|...|+.+++....... -.+....+..+..++.+.|+++.|...++++.+..|.++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 334444455555555555555555443111110 1122344444555555555555555555555554444433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.026 Score=52.52 Aligned_cols=89 Identities=8% Similarity=-0.012 Sum_probs=61.1
Q ss_pred HHHHhhCCHHHHHHHHHhhhhc-----CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CcchH
Q 011472 127 DLIAKVQGIEQAASYFNCVPEK-----LKL----PSVYIALLNAYACAKSAEKAEIIMQQMRDR-----GL-VK-KTIDY 190 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~ 190 (485)
.-+.+.|++++|+.++++..+. +|+ ..+++.|..+|...|++++|+.++++.... |. .| ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344567777777777766543 222 356788888888888888888888876532 21 12 23457
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 191 NSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 191 ~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
+.|...|...|++++|+.++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888764
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.67 E-value=0.014 Score=40.94 Aligned_cols=69 Identities=13% Similarity=-0.081 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCC
Q 011472 396 PNVRTWYLMATGYLQNNQ---SEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEII 470 (485)
Q Consensus 396 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 470 (485)
.|+..+..+..++...++ .++|..+++++++. -+-+......+...+.+.|++++|+..|+++.+..|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345666666666544333 57777777777763 2235566666667777777777777777777777664
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.021 Score=43.78 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccCCHHHHH
Q 011472 344 MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRG---LLHKAETLIYKAQLRGTEP--NVRTWYLMATGYLQNNQSEKGV 418 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 418 (485)
...+++-|.+..+.|. ++..+...+..++++.+ +++++..+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444444444333 34444444555555554 3445555555555532 12 2333344444555555555555
Q ss_pred HHHHHHHH
Q 011472 419 EAMKKALV 426 (485)
Q Consensus 419 ~~~~~~~~ 426 (485)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.0048 Score=57.39 Aligned_cols=26 Identities=19% Similarity=-0.035 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
+++.|...|...|++++|..++++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35555556666666666666555543
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.042 Score=56.09 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHhcCChHHHHH-HHHHHHhcCCCCCC-hhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHH
Q 011472 93 FRLYKRFSHALQ-ISMWMTKKSNFVLT-PADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEK 170 (485)
Q Consensus 93 ~~~~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 170 (485)
....+++++|.+ ++..+ . ......++..+.+.|..++|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i--------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV--------EGKDSLTKIARFLEGQEYYEEALNISPDQD----------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC--------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH----------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC--------CchHHHHHHHHHHHhCCChHHheecCCCcc----------hheehhhhcCCHHH
Confidence 345677777765 44211 2 3333555666677777777776653211 11233456677887
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011472 171 AEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEA 250 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 250 (485)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~- 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE- 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-
Confidence 77775432 2556777788888888888888888777642 3344555555666666655555554
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
..|. ++....+|.+.|++++|++++.++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3332 1223344555666666666666543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.083 Score=40.48 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhhccCCCCcc--CHHHHHHHHHHHHhcCCH
Q 011472 380 HKAETLIYKAQLRGTEPNVRTWYLMATGYLQNN---QSEKGVEAMKKALVLLEAGTRWKP--SKECLAACLGYYKKERDI 454 (485)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 454 (485)
..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+. . .| +...+..+.-++.+.|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-CccchHHHHHHHHHHHHHccCH
Confidence 344445555444433 45555555555666655 444666666666653 1 23 233444455556666666
Q ss_pred hHHHHHHHHHhcCCCCCHH
Q 011472 455 EGADYFIKLLTGKEIISAD 473 (485)
Q Consensus 455 ~~a~~~~~~~~~~~~~~~~ 473 (485)
++|.+.++.+.+..|.+..
T Consensus 88 ~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHH
Confidence 6666666666666665544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.35 Score=38.08 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=65.9
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhh
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKK 205 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 205 (485)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 45556677777777776655 2566777777777777888777777776543 3445555666677666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 206 LDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 206 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
..++-+.....| -++....++.-.|+++++.++|.+..
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555544444432 23444455556677777777775543
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.05 E-value=0.085 Score=39.90 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCCccc----HHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCC
Q 011472 295 RAYDFVITQYAACGNK------DDVLRVWKRYKQNLKVYNRG----YICVIS---SLLKFDGMESAEKIFEEWESRNLCH 361 (485)
Q Consensus 295 ~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~----~~~li~---~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (485)
.+|-..+...-+.|++ ++..++|+......+|+... |..+-- .+...++.++|.++|+.+.+.+-+-
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH
Confidence 4444444444444555 55555555555555554311 111100 1123478888899998887653332
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011472 362 DIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEP 396 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 396 (485)
..+|.....--.+.|+++.|.+++.+.+..+.+|
T Consensus 94 -AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 94 -AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 5556556666667899999999999888877654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.04 E-value=0.07 Score=45.75 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhhhhcCCC---hHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc-CChh
Q 011472 134 GIEQAASYFNCVPEKLKL---PSVYIALLNAYAC-----AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT-GNYK 204 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~ 204 (485)
....|...+++..+..|+ -..|..|...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 367888889999998887 4579999999998 599999999999999876433478888888888884 9999
Q ss_pred hHHHHHHHHHHcCCC--CCcchHHH
Q 011472 205 KLDSLMHEMEEKGID--CDKYTFSI 227 (485)
Q Consensus 205 ~a~~~~~~m~~~g~~--p~~~~~~~ 227 (485)
++.+.+++.++.... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999997665 66544443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.98 E-value=0.066 Score=45.91 Aligned_cols=107 Identities=11% Similarity=0.007 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHh-----hCCHHHHHHHHHhhhhcCCC--hHHHHHHHHHHHhc-CCHHH
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVAIRLDLIAK-----VQGIEQAASYFNCVPEKLKL--PSVYIALLNAYACA-KSAEK 170 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~~~~~~--~~~~~~ll~~~~~~-~~~~~ 170 (485)
...|...+++.++....-.+...+.++...|.+ -|+.++|.+.|++..+.+|+ ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 457888888888865211135688888888988 49999999999999999884 78888888988885 99999
Q ss_pred HHHHHHHHHhCCCC--CCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 171 AEIIMQQMRDRGLV--KKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 171 a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
+.+.+++....... |+....|.+.+ ++|..++.+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence 99999999998665 55544443332 4555555444
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.93 E-value=0.078 Score=37.93 Aligned_cols=60 Identities=8% Similarity=-0.089 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhcc-----CCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMH-----NKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
.-+..+...+.+.|+++.|...|+...+.... .+....+..+..++.+.|+++.|...++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33344455555555555555555554443100 1122334444444444444444444444
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.41 Score=37.65 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 164 CAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
+.|+++.|.++.+.+ -+...|..|.......|+++-|...|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444332 13444444444444444444444444443
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.87 E-value=1.8 Score=43.93 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH--HHHHHHHHcCCH
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPN--HLIDAYCRRGLL 379 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~ 379 (485)
..++-.|+.+....++..+.+....+..-...+.-++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 33445566666666666433332222222233333344567777777777766543 122222222 233455566776
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCH-hHHH
Q 011472 380 HKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDI-EGAD 458 (485)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~ 458 (485)
....+++..+.+. ...++.-...+.-++...|+.+.+.+++..+.+ ...|...--..+.-+....|.. .++.
T Consensus 577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~------~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK------SHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG------CSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 6666677777653 112333333333345455665555565554443 2334444333344444444443 4566
Q ss_pred HHHHHHhc
Q 011472 459 YFIKLLTG 466 (485)
Q Consensus 459 ~~~~~~~~ 466 (485)
..+..+..
T Consensus 650 d~L~~L~~ 657 (963)
T 4ady_A 650 DVLDPLTK 657 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 66666654
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.78 E-value=1.9 Score=43.83 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=46.3
Q ss_pred hcCChHHHHHHHHHHHHhhccCCcchh--HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHH
Q 011472 270 KAGLSDKALAVLRKSEVLMMHNKFSRA--YDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESA 347 (485)
Q Consensus 270 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 347 (485)
..|+.+.+..+.+.+... ..|.... -.++.-+|+..|+.....+++..+......+......+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 445555555555554432 1221111 112233444555554444455543333222322222222333334444444
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 011472 348 EKIFEEWESRNLCHDIRIPNHLIDAYCRRGLL-HKAETLIYKAQ 390 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 390 (485)
.++++.+.+.+ .|.+..-..+.-+....|.. .++..++..+.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 44444333321 22333223333333333332 34555555554
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.78 E-value=3.4e-06 Score=76.67 Aligned_cols=264 Identities=13% Similarity=0.079 Sum_probs=183.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHH
Q 011472 151 LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLS 230 (485)
Q Consensus 151 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 230 (485)
.+.+|..|..+..+.+.+.+|++.|- +. -|...|..++.+..+.|.+++-++++...++..-.| ..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH
Confidence 46778888888888888888876662 22 267778888888888888888888887776653333 34457888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 231 ACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 231 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
+|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+ .-|..|..++.+.|++
T Consensus 125 ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----------sN~akLAstLV~L~~y 186 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----------CCCTTTSSSSSSCSGG
T ss_pred HHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----------ccHHHHHHHHHHHHHH
Confidence 888888866543332 1133333345788888888888887776543 2344555667777777
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 311 DDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
..|.+.-+ -..++.||-.+-.+|...+.+..|...--.+.- ...-...++..|-..|.+++.+.+++.-.
T Consensus 187 q~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 187 QAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp GSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77765422 235778999999999999998887665544442 22334457778899999999999999887
Q ss_pred HcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011472 391 LRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKL 463 (485)
Q Consensus 391 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (485)
.. -......|+.|.-.|++- ++++.++.++.... . .| .-.++++|.+..-|.++.-++..
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s------r--iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS------R--VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS------S--SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH------h--cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 43 235688999999888886 56666666654332 1 12 12478899999999999877764
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.71 E-value=0.16 Score=37.39 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHH---HHHHHHHHHHhhccCCCCcc--CHHHHHHHHHHHH
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEK---GVEAMKKALVLLEAGTRWKP--SKECLAACLGYYK 449 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 449 (485)
....+..+.+-|.+....|. |+..+--.+..++.+..+... ++.+++...+ .-.| .......|.-++.
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHH
Confidence 33444555566665555443 566666666667777766554 7777777765 2223 2234445556778
Q ss_pred hcCCHhHHHHHHHHHhcCCCCCHHH
Q 011472 450 KERDIEGADYFIKLLTGKEIISADL 474 (485)
Q Consensus 450 ~~g~~~~a~~~~~~~~~~~~~~~~~ 474 (485)
+.|++++|.+.++.+.+..|.+...
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 8888888888888888877766553
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.60 E-value=0.21 Score=37.82 Aligned_cols=62 Identities=3% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 412 NQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 412 g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
++.++|.++|+.+++. ...+ ...|.....--.++|+...|.+++.+....++.+.+.+...+
T Consensus 74 ~D~d~aR~vy~~a~~~---hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARAN---CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHH---CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH---hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 4555555555555542 1122 444444445555566666666666666655555555554444
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.58 E-value=2.7e-05 Score=70.92 Aligned_cols=248 Identities=9% Similarity=0.028 Sum_probs=148.9
Q ss_pred ccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHH
Q 011472 45 RKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAI 124 (485)
Q Consensus 45 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (485)
..+.-|+.|..+....+...+++.. .++ .-|+..|..++....+.|.+++-+..+.-..+.. -.|..-+.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIds----yIk---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDte 121 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDS----YIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETE 121 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTS----SCC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHH----HHh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHH
Confidence 3344477777777777666664332 222 2456667888888888888888777776655543 45666667
Q ss_pred HHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CC
Q 011472 125 RLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRG--------------------LV 184 (485)
Q Consensus 125 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------------------~~ 184 (485)
++-+|++.++..+-++++. +|+..-...+.+-|...|.++.|.-+|..+..-. -.
T Consensus 122 Li~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777888777655443332 3555556667777778888888877776542211 01
Q ss_pred CCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 011472 185 KKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATA 264 (485)
Q Consensus 185 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 264 (485)
-++.||-.+-.+|...+++.-|.-.--.++- .|| ....++.-|-+.|-+++.+.+++.-. .. -......|+.|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl-gl-ErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL-GL-ERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT-TS-TTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh-CC-CchhHHHHHHH
Confidence 2566777777777777777766655555542 222 23345666777777777777777766 21 12556677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhhccC------CcchhHHHHHHHHHhcCCHHHHHH
Q 011472 265 ASGYVKAGLSDKALAVLRKSEVLMMHN------KFSRAYDFVITQYAACGNKDDVLR 315 (485)
Q Consensus 265 ~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 315 (485)
.-.|++- ++++..+.++..-.+...+ .....|.-++-.|.+-.+++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777665 4455555444432221111 122456666667777777665543
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.43 E-value=0.54 Score=34.82 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011472 296 AYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNL 359 (485)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 359 (485)
.....++.....|+-++-.+++..+....+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3333444444444444444444443333444444444455555555555555555555444443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.29 Score=48.55 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=38.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 266 SGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKR 319 (485)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (485)
+-+...|+++-|+++-++.... .|.+-.+|..|..+|...|+++.|+-.++.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3355678888888888877765 566667888888888888888888877773
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.06 E-value=0.41 Score=35.23 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCChHHH
Q 011472 202 NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG---IDKIVAMMEADRGVV-LDWTVYATAASGYVKAGLSDKA 277 (485)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 277 (485)
....+.+-|......|. |+..+-..+..++.+..+... ++.+++.+. +.+.+ -.....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555444 455555556666666665554 677777776 43311 1223334566677777888888
Q ss_pred HHHHHHHHHh
Q 011472 278 LAVLRKSEVL 287 (485)
Q Consensus 278 ~~~~~~~~~~ 287 (485)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887777776
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=3.9 Score=38.06 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 236 SDGEGIDKIVAMMEAD----RGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
|+++.|++.+-.+.+. .+..........++..|...|+++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566666555444421 12333445555566666666666666555554443
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=4.1 Score=37.93 Aligned_cols=190 Identities=7% Similarity=0.037 Sum_probs=98.2
Q ss_pred cCChhhHHHHHHHHHHc-----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----h
Q 011472 200 TGNYKKLDSLMHEMEEK-----GIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYV----K 270 (485)
Q Consensus 200 ~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 270 (485)
.+++++|++.+-.+.+. +..........++..|...|+++...+.+..+....|..+.. ...++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 36788999888777653 233344567788899999999999988888877455543322 233443222 2
Q ss_pred cCChHHHH--HHHHHHHHhhccCC-----cchhHHHHHHHHHhcCCHHHHHHHHHHHh-hcCCCC-----cccHHHHHHH
Q 011472 271 AGLSDKAL--AVLRKSEVLMMHNK-----FSRAYDFVITQYAACGNKDDVLRVWKRYK-QNLKVY-----NRGYICVISS 337 (485)
Q Consensus 271 ~g~~~~A~--~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~-----~~~~~~li~~ 337 (485)
....+... .+.+.......... .......|...|...|++.+|..++..+. +....+ ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222111 11111100000000 00112455666667777777777776432 111111 1234455566
Q ss_pred HHhcCCHHHHHHHHHHHHh----cCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011472 338 LLKFDGMESAEKIFEEWES----RNLCHD--IRIPNHLIDAYCRRGLLHKAETLIYKAQL 391 (485)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 391 (485)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666532 111111 12344455555566666666666555543
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.44 E-value=1.7 Score=32.20 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011472 186 KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGV 254 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 254 (485)
+....+..+......|+-++-.+++.++.. +.+|+....-.+..+|.+.|+..++.+++.+.. +.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC-KKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhhh
Confidence 445556666777777777777777777543 245566666677777777777777777777777 6666
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.42 E-value=1.5 Score=46.52 Aligned_cols=193 Identities=9% Similarity=0.019 Sum_probs=120.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---------------
Q 011472 263 TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVY--------------- 327 (485)
Q Consensus 263 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 327 (485)
.++..+...+..+-+.++..- .+.+...--.+..+|...|++++|...|.....+...+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 455666777777777665433 22333444567788899999999999998643332111
Q ss_pred --------cccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011472 328 --------NRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDI----RIPNHLIDAYCRRGLLHKAETLIYKAQLRGTE 395 (485)
Q Consensus 328 --------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 395 (485)
..-|..++..+.+.+.++.+.++-+...+....-+. ..|..+.+.+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 112667888888999999999888877764322121 2578889999999999999999988876443
Q ss_pred CcHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHH-HHH
Q 011472 396 PNVRTWYLMATGYLQNNQS------------EKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY-FIK 462 (485)
Q Consensus 396 p~~~~~~~li~~~~~~g~~------------~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~-~~~ 462 (485)
-......|+..+|..|.. ++..+++..-.+. .......+.-|..|-..+...|++..|.. +|+
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~---~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe 1045 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQ---MINVESQPCWYNILFSWRYKHQNYRDAAAIIYE 1045 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHH---HHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHh---CCccccCCCHHHHhHhhhhccCChHHHHHHHHH
Confidence 356667777777766554 3344444322211 00011111234555555667788776554 456
Q ss_pred HHhc
Q 011472 463 LLTG 466 (485)
Q Consensus 463 ~~~~ 466 (485)
.+.+
T Consensus 1046 ~~~R 1049 (1139)
T 4fhn_B 1046 KLSR 1049 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.38 Score=47.71 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=75.6
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHHc------CCCCc-H-----
Q 011472 333 CVISSLLKFDG-MESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGL-LHKAETLIYKAQLR------GTEPN-V----- 398 (485)
Q Consensus 333 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~------~~~p~-~----- 398 (485)
.++..+...++ .+.|..+++++.+..+..+......++..+.+.++ --+|.+++.+..+. ...+. .
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 47788888888776332222122233333333222 22344555444321 11111 1
Q ss_pred -----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 011472 399 -----RTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLT 465 (485)
Q Consensus 399 -----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (485)
.....-..-+...|+++-|+++-++++.. .+-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122234466789999999999999973 33367999999999999999999999998874
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.34 E-value=1.3 Score=40.35 Aligned_cols=129 Identities=11% Similarity=-0.050 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHH---hcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCH-HHHHHHHHhhhhcCCChHHHHH
Q 011472 82 DMEQLRIIIKKFR---LYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGI-EQAASYFNCVPEKLKLPSVYIA 157 (485)
Q Consensus 82 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 157 (485)
|...|..++.... ..|+.+.|.+.++.....-.-++-+... ...+ .....-+++.. ..+...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~-----~~a~~~ 176 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK-----VLAHTA 176 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH-----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH-----HHHHHH
Confidence 3444555554332 3578888888888887653212211110 0111 11111122211 134455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH-----cCCCCCcchH
Q 011472 158 LLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE-----KGIDCDKYTF 225 (485)
Q Consensus 158 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 225 (485)
++..+...|++++|+..+..+..... -+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67777888888888888888876543 2677888888998889999888888888654 3888877654
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.23 E-value=6.2 Score=41.90 Aligned_cols=61 Identities=13% Similarity=-0.013 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLD---WTVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
|..++..+.+.+.++.+.++-....+..+...+ ...|..+.+.+...|++++|...+-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 344445555555555555444443311111110 1134445555555555555555554443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.56 E-value=1.4 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=18.8
Q ss_pred CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC
Q 011472 433 RWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK 467 (485)
Q Consensus 433 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (485)
.+-|++.+..+.+++|.+.+|+.-|.++|+-++.+
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555443
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.51 E-value=0.68 Score=42.31 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHH
Q 011472 368 HLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLA 442 (485)
Q Consensus 368 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~ 442 (485)
.++..+...|+.++|...+..+..... -+...|..+|.++.+.|+..+|++.|++..+.+...-|+.|...+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 455666677777777777777765431 25667777777777777777777777776664444457777665533
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.78 E-value=3.2 Score=32.07 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCc-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhc---cCC--
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRG-TEPN-------VRTWYLMATGYLQNNQSEKGVEAMKKALVLLE---AGT-- 432 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 432 (485)
+-.-++.+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|+++++... ...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344555666667777666665543210 1122 12445556667777777777777777655411 000
Q ss_pred --------------CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 433 --------------RWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 433 --------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
...++...-..+..+|.+.|++++|+.+++.+..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1222234444567788999999999999887643
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.60 E-value=2.9 Score=29.10 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 240 GIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
+..+-++.+. ..+..|++....+.+.+|.+.+++..|.++|+-++.+
T Consensus 28 e~rrglN~l~-~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444 4455566666666666666666666666666665555
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.10 E-value=4.5 Score=29.92 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCC
Q 011472 395 EPNVRTWYLMATGYLQNNQ---SEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIIS 471 (485)
Q Consensus 395 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 471 (485)
.|+..+--.+..++.+..+ ..+++.++++..+. +-.-....+..|.-++.+.|++++|.+..+.+.+..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3444444444445555443 33566666666653 211123344445556667777777777777777666655
Q ss_pred HH
Q 011472 472 AD 473 (485)
Q Consensus 472 ~~ 473 (485)
..
T Consensus 112 ~Q 113 (134)
T 3o48_A 112 KQ 113 (134)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.72 E-value=18 Score=35.10 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 134 GIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
..++...++++-+........-+..+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 45555555554443211122334445556666666666554432 1123333333455555666666665555555
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCC
Q 011472 214 EEKGIDCDKYTFSILLSACAAASD 237 (485)
Q Consensus 214 ~~~g~~p~~~~~~~ll~~~~~~g~ 237 (485)
=..|- .....+..++..+.+.|.
T Consensus 129 W~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 129 WLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HhCCC-CCcHHHHHHHHHHHHCCC
Confidence 43332 133455556655555443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.42 E-value=5.1 Score=29.64 Aligned_cols=66 Identities=5% Similarity=-0.024 Sum_probs=35.5
Q ss_pred CCcccHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 361 HDIRIPNHLIDAYCRRGL---LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444445555555443 335666666666544111234444555566666777777776666663
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.07 E-value=3.3 Score=30.55 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=25.9
Q ss_pred CCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCHHHHHHHH
Q 011472 433 RWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKEIISADLQDRLL 479 (485)
Q Consensus 433 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 479 (485)
.+-|++......+++|.+.+|+.-|.++|+-++.+-.+...+|..++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 55566666666666666666666666666655544333333444443
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.81 E-value=3.6 Score=38.12 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=51.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCcHHH--HH
Q 011472 330 GYICVISSLLKFDGMESAEKIFEEWESRNLCHD--IRIPNHLIDAYCRRGLLHKAETLIYKAQL---RGTEPNVRT--WY 402 (485)
Q Consensus 330 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~--~~ 402 (485)
+...+...+.+.|+++.|.+.+.++......+. ...+-.+++.+...+++..+...+.+... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 555666666666666666666666665432222 23345556666666666666666666542 222222211 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 011472 403 LMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 403 ~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.-+..+...+++..|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223445666666666666655
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.59 E-value=3 Score=32.25 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKK 112 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 112 (485)
++..+.+++...|++..|...|+..++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 5677888999999999999999987544
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.77 E-value=9.9 Score=32.12 Aligned_cols=114 Identities=8% Similarity=0.008 Sum_probs=66.8
Q ss_pred HHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCcccHHHHHHHHHhcCC
Q 011472 267 GYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQ---NLKVYNRGYICVISSLLKFDG 343 (485)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~ 343 (485)
.+.+.|++++|++....-.+. .|.|...-..+++.+|-.|++++|.+-++.... ...|....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 455677888888877777776 566667777888888888888888877774332 222333344444443
Q ss_pred HHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 011472 344 MESAEKIFEEWESRNLCHDIR-----IPNHLIDAYC--RRGLLHKAETLIYKAQLR 392 (485)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~a~~~~~~m~~~ 392 (485)
+..=.++...+-.|... -...++.+.. ..|+.++|..+-.++.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333333333221 1233444443 358888888887777654
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.55 E-value=9.1 Score=28.28 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHH
Q 011472 241 IDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVIT 302 (485)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (485)
..+-++.+. ..++.|++....+.+.+|.+.+++..|.++|+-++.+. .+....|..+++
T Consensus 72 lrrglN~l~-~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLV-GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHT-TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHh-ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 444455555 55566677776667777777777777777777666652 222244555543
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.00 E-value=10 Score=28.41 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHH
Q 011472 150 KLPSVYIALLNAYACAKS---AEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 150 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 215 (485)
++..+-..+..++++..+ ..+++.+++++...+..-.......|.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445555443 334555555555433211233334455555566666666666666655
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.60 E-value=20 Score=31.29 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhH
Q 011472 127 DLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKL 206 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 206 (485)
......|++-+|.+.++ ++..=|.+.+++++|++++..-.. .+.+.|+...|
T Consensus 21 ~~~I~~G~yYEAhQ~~R-------------tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa 72 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLR-------------TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSG 72 (312)
T ss_dssp HHHHHHTCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHH
T ss_pred HHHhhccChHHHHHHHH-------------HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchH
Confidence 33445566666655544 444556677777777777654322 13344444333
Q ss_pred HH----HHHHHHHcCCCCCcchHHHHHHHHHhcCCh-----HHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCChH
Q 011472 207 DS----LMHEMEEKGIDCDKYTFSILLSACAAASDG-----EGIDKIVAMMEADRG--VVLDWTVYATAASGYVKAGLSD 275 (485)
Q Consensus 207 ~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 275 (485)
-+ +.+...+.+++++......++..+.....- +-..+...... +.| ..-++.....+...|.+.|++.
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~-~~g~~~~Gdp~LH~~~a~~~~~e~~~~ 151 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSI-KFSEYKFGDPYLHNTIGSKLLEGDFVY 151 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHH-HTSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHhhcCCHH
Confidence 33 344444556666666666666555443211 11112222222 221 2356777788899999999999
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 011472 276 KALAVLRKSEVLMMHNKFSRAYDFVITQYAAC---GNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFE 352 (485)
Q Consensus 276 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 352 (485)
+|...|-. + ...+...+..++--+... |...++--.. .-.+-.|.-.++...|..+++
T Consensus 152 ~A~~H~i~----~-~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 152 EAERYFML----G-THDSMIKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHT----S-CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHh----C-CCccHHHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHH
Confidence 98887752 1 111234444444433333 4443321111 112223445678888888877
Q ss_pred HHH
Q 011472 353 EWE 355 (485)
Q Consensus 353 ~~~ 355 (485)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.39 E-value=21 Score=31.42 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH-----HHhhcCCCCcccHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK-----RYKQNLKVYNRGYIC 333 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~ 333 (485)
.+|.++..-|.+.+++++|++++..-. ..+.+.|+...+-++-- .-+.+.+++......
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456667777777777777777765522 23445566655554443 124566677777777
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----hcC--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011472 334 VISSLLKFDGME-SAEKIFEEWE----SRN--LCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMAT 406 (485)
Q Consensus 334 li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 406 (485)
++..+.....-+ .=..+.+.+. +.| ..-|+.....+...|.+.+++.+|+..|- .|-.+.+..|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 777766554311 1122333333 222 23345566677777777777777777662 123333455544443
Q ss_pred HHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 407 GYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 407 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
-+...+...++ +...-.. +--|.-.++...|..+++...+
T Consensus 176 ew~~~~~~~e~-------------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHTA-------------------PLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGGH-------------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccH-------------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 33333222111 1111112 2235667788888887666553
No 261
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.28 E-value=23 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011472 300 VITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~ 318 (485)
.+...+..|+.+-+..+++
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHH
Confidence 3344445566555555544
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.24 E-value=18 Score=30.50 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHHHHcCCHHHHH
Q 011472 341 FDGMESAEKIFEEWESRNLCHDIRI--PNHLIDAYCRRGLLHKAE 383 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~ 383 (485)
.++.....++.+.+.+.|..++... -.+.+...++.|+.+-+.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 3444444455555555555444322 112233334455544333
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.91 E-value=14 Score=27.68 Aligned_cols=65 Identities=5% Similarity=-0.020 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 362 DIRIPNHLIDAYCRRGL---LHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 362 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333334444444433 234444555544432111122223333445555555555555555553
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.73 E-value=30 Score=31.33 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=84.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCHHHHH---
Q 011472 192 SMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKY-----TFSILLSACAAASDGEGIDKIVAMMEADR-GVVLDWTVYA--- 262 (485)
Q Consensus 192 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~--- 262 (485)
-++..|...|++.+|.+++.++.+.=-+.|.. .+..-+..|...+++.++...+.....-. .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 46777888888888888888887642222222 24445567778888888888887765221 1223433321
Q ss_pred -HHHHHHH-hcCChHHHHHHHHHHHHhhccCCc-----chhHHHHHHHHHhcCCHHHHHHHHH-H-HhhcCCCCcccHHH
Q 011472 263 -TAASGYV-KAGLSDKALAVLRKSEVLMMHNKF-----SRAYDFVITQYAACGNKDDVLRVWK-R-YKQNLKVYNRGYIC 333 (485)
Q Consensus 263 -~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~~~~ 333 (485)
.-...+. ..+++..|...|-+....-....+ ...|..+ +-.-.++..+...++. . ...-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 1222345 678888888888776543111111 1122222 2222333333333333 2 12222344444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011472 334 VISSLLKFDGMESAEKIFEEW 354 (485)
Q Consensus 334 li~~~~~~~~~~~a~~~~~~~ 354 (485)
++.++ ..+++.....+++..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHH-HhCCHHHHHHHHHHH
Confidence 55543 456676666666554
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.06 E-value=7.8 Score=32.74 Aligned_cols=60 Identities=13% Similarity=-0.004 Sum_probs=46.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCCh
Q 011472 91 KKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLP 152 (485)
Q Consensus 91 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 152 (485)
..+.+.|++++|++....-++.. |-+......++..+|-.|+++.|.+-++.+.+..|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44567788888888888777765 5677777778888888888888888888887776653
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.97 E-value=20 Score=33.06 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH---
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD--KYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYA--- 262 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 262 (485)
.++..+...|.+.|++++|.+.|.++......+. ...+-..++.+...+|+..+...++++.....-.+++...+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677888899999999999999999987633322 34667778888899999999988888753222223332221
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 263 -TAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 263 -~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.-...+...+++.+|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122234578899999888887655
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.40 E-value=12 Score=25.90 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=49.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
.....++|..+-+++...+ ..+.+..+ +..+...|++++|..+.+... .||...|-+|-. .+.|..+++..
T Consensus 18 G~H~HqEA~tIAdwL~~~~----~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLG----QDEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHH
Confidence 3456677777777777765 23333332 455667777777777777666 366666665543 35666666666
Q ss_pred HHHHHHhCC
Q 011472 174 IMQQMRDRG 182 (485)
Q Consensus 174 ~~~~m~~~~ 182 (485)
-+.++...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 666666554
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.92 E-value=13 Score=25.84 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=50.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCChhHHHHH-HHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 011472 95 LYKRFSHALQISMWMTKKSNFVLTPADVAIR-LDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEI 173 (485)
Q Consensus 95 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 173 (485)
.....++|..+-+++...+ ..+.+..+ +..+...|++++|..+.+... .||...|-+|-. .+.|..+++..
T Consensus 19 G~H~HqEA~tIAdwL~~~~----~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKG----EEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777887777777765 23333332 455667777777777777666 367766666544 35566666666
Q ss_pred HHHHHHhCC
Q 011472 174 IMQQMRDRG 182 (485)
Q Consensus 174 ~~~~m~~~~ 182 (485)
-+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666666554
No 269
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=79.54 E-value=15 Score=33.80 Aligned_cols=317 Identities=9% Similarity=0.016 Sum_probs=140.2
Q ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhh
Q 011472 70 LLDQWVEEGRPLDMEQ--LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPE 147 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 147 (485)
+++.+.+.|..|+... ..+.+...+..|+.+-+.-+++.-...+ .....-...+...+..|+.+-..-+++.-..
T Consensus 29 ~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 105 (437)
T 1n11_A 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105 (437)
T ss_dssp HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS---CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC
Confidence 5567777777666432 2234555566787665555554321111 1111112234556677888766666654222
Q ss_pred cC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcch--
Q 011472 148 KL-KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT-- 224 (485)
Q Consensus 148 ~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-- 224 (485)
.. .+..-++ .+...+..|+.+-+..+++.-..... .+..-++ .+...+..|+.+- .+.+.+.|..|+...
T Consensus 106 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~ 178 (437)
T 1n11_A 106 PNLATTAGHT-PLHIAAREGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVRV----AELLLERDAHPNAAGKN 178 (437)
T ss_dssp TTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCSS
T ss_pred CCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCCCCC
Confidence 11 1222222 33444566777766655543211111 1222222 3334456676553 444555666554321
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMMEADRGVVLDW---TVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVI 301 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 301 (485)
-.+.+...+..|+.+-+.. +. +.|..++. ..++ .+...+..|+.+-+..+++.-... ...+....+ .+
T Consensus 179 g~t~L~~A~~~~~~~~v~~----Ll-~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t-~L 249 (437)
T 1n11_A 179 GLTPLHVAVHHNNLDIVKL----LL-PRGGSPHSPAWNGYT-PLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVT-PL 249 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHH----HG-GGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCC-HH
T ss_pred CCCHHHHHHHcCCHHHHHH----HH-hCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCC-HH
Confidence 1123344456677654433 33 33332322 1112 334445677766655555431100 111111222 23
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHHcCC
Q 011472 302 TQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIR---IPNHLIDAYCRRGL 378 (485)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 378 (485)
...+..|+.+-+..+++.-......+..-.+. +...+..|+.+-+..++ +.|..++.. -.+. +...+..|+
T Consensus 250 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~g~ 323 (437)
T 1n11_A 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTP-LHVASHYGN 323 (437)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCH-HHHHHHSSC
T ss_pred HHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCH-HHHHHHcCc
Confidence 34456677665555444211111122222223 33344566765544444 445444332 2333 344456677
Q ss_pred HHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhccCCHHH
Q 011472 379 LHKAETLIYKAQLRGTEPNVR---TWYLMATGYLQNNQSEK 416 (485)
Q Consensus 379 ~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~ 416 (485)
.+-+ +.+.+.|..++.. -++.|. ..+..|..+-
T Consensus 324 ~~~v----~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~i 359 (437)
T 1n11_A 324 IKLV----KFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDI 359 (437)
T ss_dssp SHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHH
T ss_pred HHHH----HHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHH
Confidence 6544 4444556555432 223333 3344565543
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=79.17 E-value=19 Score=33.17 Aligned_cols=296 Identities=9% Similarity=0.014 Sum_probs=137.2
Q ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--hhHHHHHHHHHHhhCCHHHHHHHHHhh
Q 011472 70 LLDQWVEEGRPLDMEQ--LRIIIKKFRLYKRFSHALQISMWMTKKSNFVLT--PADVAIRLDLIAKVQGIEQAASYFNCV 145 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~ 145 (485)
+++.+.+.|..++... -.+.+...+..|+.+-+.-++ +.| ..++ ...-...+...+..|+.+....+++.-
T Consensus 62 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL----ENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH----HHT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH----hCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 5566677776554321 123444556677765444444 333 1111 111112345567788888888777653
Q ss_pred hhcC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 011472 146 PEKL-KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTI---DYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221 (485)
Q Consensus 146 ~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (485)
.... .+..-++ .+...+..|+.+-+. .+.+.|..|+.. ..+ .+...+..|+.+ +++.+.+.|..|+
T Consensus 137 ~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 137 ASQACMTKKGFT-PLHVAAKYGKVRVAE----LLLERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPH 206 (437)
T ss_dssp CCSCCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSC
T ss_pred CCCcCCCCCCCC-HHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCC
Confidence 3221 1222222 344455667766444 444455544432 222 333445666654 4455556665554
Q ss_pred cchH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcc--CCcchhH
Q 011472 222 KYTF--SILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMH--NKFSRAY 297 (485)
Q Consensus 222 ~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~ 297 (485)
...+ .+.+...+..|+.+-+..+++.-. ..+. .+....+ .+...+..|+.+-+..+++. +.. ..+..-.
T Consensus 207 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~-~~~~g~t-~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~ 279 (437)
T 1n11_A 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANA-ESVQGVT-PLHLAAQEGHAEMVALLLSK----QANGNLGNKSGL 279 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTC-CCTTCCC-HHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCC-CCCCCCC-HHHHHHHCCCHHHHHHHHhc----CCCCCCCCCCCC
Confidence 4321 123444566788776655554321 1111 1111111 23334566776655444432 211 1111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHH
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRI---PNHLIDAYC 374 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 374 (485)
+ .+...+..|+.+-+..+++.-..-...+..-.+. +...+..|+.+-+. .+.+.|..++... .+.| ...+
T Consensus 280 t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~gad~n~~~~~g~t~L-~~A~ 352 (437)
T 1n11_A 280 T-PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LHVASHYGNIKLVK----FLLQHQADVNAKTKLGYSPL-HQAA 352 (437)
T ss_dssp C-HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH-HHHHHHSSCSHHHH----HHHHTTCCTTCCCTTSCCHH-HHHH
T ss_pred C-HHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH-HHHHHHcCcHHHHH----HHHhcCCCCCCCCCCCCCHH-HHHH
Confidence 2 2334456677665555554311111122222333 33445567765444 4445566555432 3333 3445
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcH
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPNV 398 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~ 398 (485)
+.|+.+ +++.+.+.|..|+.
T Consensus 353 ~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 353 QQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HTTCHH----HHHHHHHTTCCSCC
T ss_pred HCChHH----HHHHHHHCcCCCCC
Confidence 567654 44555566776653
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.84 E-value=34 Score=30.11 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=95.6
Q ss_pred HHHHHhhCCH---HHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 126 LDLIAKVQGI---EQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 126 ~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
+......|++ -+|.+.++ ++..=|.+.+++++|++++..-.. .+.+.|+
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~R-------------Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q 70 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETR-------------LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQ 70 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTC
T ss_pred HHHHHhCCCCccccHHHHHHH-------------HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCC
Confidence 3444556666 55555444 344446777788887777654322 1334444
Q ss_pred hhhHHHH----HHHHHHcCCCCCcchHHHHHHHHHhcCChH-HHHHHHHH----HHh-cCCCCCCHHHHHHHHHHHHhcC
Q 011472 203 YKKLDSL----MHEMEEKGIDCDKYTFSILLSACAAASDGE-GIDKIVAM----MEA-DRGVVLDWTVYATAASGYVKAG 272 (485)
Q Consensus 203 ~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~----~~~-~~~~~~~~~~~~~l~~~~~~~g 272 (485)
...|-++ ++-+.+.++++|......++..+.....-+ .-.++.+. -.+ .....-|+.....+...|.+.+
T Consensus 71 ~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 71 GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 4333333 344445566666666666666555544311 11112222 220 1123456777778889999999
Q ss_pred ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 011472 273 LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFE 352 (485)
Q Consensus 273 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 352 (485)
++.+|...|-- + ..+....+..++--+...+...++-- . ..-.+--|.-.+++..|..+++
T Consensus 151 ~~~~Ae~H~il----g-~~~s~~~~a~mL~ew~~~~~~~e~dl-------------f-iaRaVL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 151 EFEAAEKHLVL----G-TKESPEVLARMEYEWYKQDESHTAPL-------------Y-CARAVLPYLLVANVRAANTAYR 211 (336)
T ss_dssp CHHHHHHHHTT----S-CTTHHHHHHHHHHHHHHTSCGGGHHH-------------H-HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHh----c-CCchHHHHHHHHHHHHHhcCCccHHH-------------H-HHHHHHHHHHhCCHHHHHHHHH
Confidence 99998887732 2 22222455444444443333222211 1 1122334455778888888766
Q ss_pred HHHh
Q 011472 353 EWES 356 (485)
Q Consensus 353 ~~~~ 356 (485)
...+
T Consensus 212 ~f~~ 215 (336)
T 3lpz_A 212 IFTS 215 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.47 E-value=10 Score=26.25 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=45.8
Q ss_pred hCCHHHHHHHHHhhhhcCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHH
Q 011472 132 VQGIEQAASYFNCVPEKLKLPSVY-IALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLM 210 (485)
Q Consensus 132 ~~~~~~A~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 210 (485)
..+.++|..+-+.+...+. ..+. -.-+..+.+.|++++|..+.+.+. .||...|-.|.. .+.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3456666666666555433 2221 222345667777777776665443 567777665544 3667777777777
Q ss_pred HHHHHcC
Q 011472 211 HEMEEKG 217 (485)
Q Consensus 211 ~~m~~~g 217 (485)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666553
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=74.84 E-value=31 Score=28.17 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011472 160 NAYACAKSAEKAEIIMQQMRDRGLVK 185 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~~~~p 185 (485)
...++.|+.+.+..+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33445566666666666555554433
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=73.05 E-value=21 Score=29.19 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 011472 370 IDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 370 ~~~~~~~g~~~~a~~~~~~m~ 390 (485)
+....+.|+.+-+..+++...
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHhhh
Confidence 334455555555555544433
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.48 E-value=38 Score=27.17 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhhhhcCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011472 134 GIEQAASYFNCVPEKLK---LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 185 (485)
...++..+|..|...+. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34455555555554431 13345555555555555555555555555554444
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.13 E-value=38 Score=27.12 Aligned_cols=45 Identities=7% Similarity=-0.116 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 011472 274 SDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWK 318 (485)
Q Consensus 274 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (485)
..++.++|..|...+....-...|......+...|++.+|.++|+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666655554444444555555555555555555555555
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.20 E-value=83 Score=30.58 Aligned_cols=402 Identities=9% Similarity=-0.046 Sum_probs=205.6
Q ss_pred hhhhhhHhhhccccccccccccccCCccccchhhhhccCCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCC-HHHHH
Q 011472 9 TLYNIKAQLGLGNVLDSSSSYSTATGTSTREVTISLRKGSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLD-MEQLR 87 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (485)
.+.+....+..+++..+..+-..+..-...++ ..|..+...+... ...++..-+.+..-.|- ...-+
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~y-------l~y~~l~~~l~~~-----~~~ev~~Fl~~~~~~p~~~~Lr~ 76 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPY-------LEYRQITDDLMNQ-----PAVTVTNFVRANPTLPPARTLQS 76 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHH-------HHHHHHHHTGGGC-----CHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHH-------HHHHHHHhCcccC-----CHHHHHHHHHHCCCChhHHHHHH
Confidence 35566667777777766655555432222222 2455555555322 23345455555433333 34446
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC-CChHHHHHHHHHHHhcC
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL-KLPSVYIALLNAYACAK 166 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ll~~~~~~~ 166 (485)
.-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=..+ ..+..+..++..+.+.|
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCC
Confidence 667778888888776654332 13445555555677777888777766655543333 34677888888888777
Q ss_pred CHHH--HHHHHHHHHhCCCCCCcchHHHHHH-----------HHHH-cCChhhHHHHHHHHHHcCCCCCcch---HHHHH
Q 011472 167 SAEK--AEIIMQQMRDRGLVKKTIDYNSMMN-----------VYYQ-TGNYKKLDSLMHEMEEKGIDCDKYT---FSILL 229 (485)
Q Consensus 167 ~~~~--a~~~~~~m~~~~~~p~~~~~~~l~~-----------~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll 229 (485)
.+.. ...=++.+...| +...-..++. .... ..++..+...... +.|+... +...+
T Consensus 151 ~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAF 222 (618)
T ss_dssp CSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHH
Confidence 6433 333333444443 1111111111 1100 0111111111100 1222221 11122
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 011472 230 SACAAASDGEGIDKIVAMMEADRGVVLDWTVYA----TAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYA 305 (485)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (485)
.-+.+ .+.+.|...+......... +..... .+...+...+...++...+...... .. +.....-.+....
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~e~~~r~Al 296 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQ-STSLIERRVRMAL 296 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CC-CHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CC-ChHHHHHHHHHHH
Confidence 22333 3788899999888633223 333322 2222333345356677777765433 22 2223334444556
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 011472 306 ACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETL 385 (485)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 385 (485)
+.|+++.|...|+.+............-+..++...|+.++|..+|+.+.+. . ..|..+ +..+.|..-..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~l--Aa~~Lg~~~~~--- 366 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMV--AAQRIGEEYEL--- 366 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHH--HHHHTTCCCCC---
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHH--HHHHcCCCCCC---
Confidence 7799999999998765543333444556777888899999999999998742 1 234333 22233321000
Q ss_pred HHHHHHcCCCCc---HH---HHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHH
Q 011472 386 IYKAQLRGTEPN---VR---TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADY 459 (485)
Q Consensus 386 ~~~m~~~~~~p~---~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 459 (485)
....+.+. .. .-..-+..+...|....|...|....+ .. +......+.......|..+.++.
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~------~~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 367 ----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK------SK--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp ----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT------TC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh------cC--CHHHHHHHHHHHHHCCChHHHHH
Confidence 00001010 00 111234457788999999998888875 33 33333344444556677776665
Q ss_pred HHHHH
Q 011472 460 FIKLL 464 (485)
Q Consensus 460 ~~~~~ 464 (485)
.....
T Consensus 435 ~~~~~ 439 (618)
T 1qsa_A 435 ATIAG 439 (618)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 54433
No 278
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=69.43 E-value=39 Score=26.50 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=51.6
Q ss_pred CCchHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHH
Q 011472 47 GSSMYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRL 126 (485)
Q Consensus 47 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 126 (485)
..+-..|-..|.+.|-+.+.+..+++.+.+.|+.-|..--...+....+.|.+.. ..+-..+.+.| +++......+
T Consensus 32 ~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KG---I~~~~I~~al 107 (177)
T 3e3v_A 32 LRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKG---IDDNIAEDAL 107 (177)
T ss_dssp CCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTT---CCHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 3455566677777777777788888888888888887777777777776654432 44566677777 4555544443
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.95 E-value=71 Score=28.92 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC-CCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHHH--
Q 011472 299 FVITQYAACGNKDDVLRVWKRYKQNLK-VYN-----RGYICVISSLLKFDGMESAEKIFEEWESR--NLCHDIRIPNH-- 368 (485)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 368 (485)
.++..|...|++.+|.+++..+...++ .|. ..|..-+..|...+++..+...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577888888888888888885433222 222 23555666777888888888888777633 12223332221
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHHHHc-C-C-CC---cHHHHHHHHHHHhccCCHHHHHHHHH-HHHHhhccCCCCccCH
Q 011472 369 --LIDAYC-RRGLLHKAETLIYKAQLR-G-T-EP---NVRTWYLMATGYLQNNQSEKGVEAMK-KALVLLEAGTRWKPSK 438 (485)
Q Consensus 369 --l~~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~p~~ 438 (485)
-...+. ..+++..|...|-+..+. . . .| +...|..+.... . ++..+.-.++. +.... -..|+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~-----~~~pei 256 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAIT-----YSGRDI 256 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHT-----TCSHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhccccccc-----cCCccH
Confidence 122345 678888888877665421 1 0 01 122333332222 2 22222222221 21110 134555
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhcCCCCCH
Q 011472 439 ECLAACLGYYKKERDIEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 472 (485)
..+..++.+ .+.+++.+...+++.....-..++
T Consensus 257 ~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~ 289 (394)
T 3txn_A 257 DAMKSVAEA-SHKRSLADFQAALKEYKKELAEDV 289 (394)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSH
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCh
Confidence 556666655 456778777777776654333344
No 280
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=67.04 E-value=32 Score=27.76 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhcCCCCCChhHHH--------HHHHHHHhhCCHHHHHHHHHhhhhcC
Q 011472 99 FSHALQISMWMTKKSNFVLTPADVA--------IRLDLIAKVQGIEQAASYFNCVPEKL 149 (485)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~A~~~~~~~~~~~ 149 (485)
.+.|+.+|+.+.+.. +++..... ..+..|.+.|.+++|.+++++.....
T Consensus 88 LESAl~v~~~I~~e~--~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEF--TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 456777777777653 22222211 11344556666666666666655543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.56 E-value=45 Score=27.98 Aligned_cols=17 Identities=0% Similarity=-0.048 Sum_probs=7.6
Q ss_pred HHHHhhCCHHHHHHHHH
Q 011472 127 DLIAKVQGIEQAASYFN 143 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~~ 143 (485)
...+..|+.+-..-+++
T Consensus 44 ~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 44 HNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33444555544444443
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.11 E-value=66 Score=27.91 Aligned_cols=25 Identities=4% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVAMME 249 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~~~~ 249 (485)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456667777777777777777765
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.66 E-value=74 Score=28.32 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCC--HhHHHHHHHHHhcCCCCCH
Q 011472 401 WYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERD--IEGADYFIKLLTGKEIISA 472 (485)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 472 (485)
.+.++.-|...|+.++|.+.++++.. ..+. ...+...+..++-+.++ .+....++..+.+.+..+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~-----p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV-----PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-----TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC-----Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 34555566666666666666666532 0111 12233333334433322 2345555555555555433
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.24 E-value=33 Score=27.88 Aligned_cols=15 Identities=7% Similarity=-0.303 Sum_probs=6.9
Q ss_pred HhccCCHHHHHHHHH
Q 011472 408 YLQNNQSEKGVEAMK 422 (485)
Q Consensus 408 ~~~~g~~~~A~~~~~ 422 (485)
..+.|+.+-+.-+.+
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344555544444443
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.47 E-value=51 Score=26.80 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHH
Q 011472 194 MNVYYQTGNYKKLDSLMHEMEEKGIDCDKYT--FSILLSACAAASDGEGIDKIVAMMEADRGVVLDW---TVYATAASGY 268 (485)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 268 (485)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++. ...+ .+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~t-~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-----AGASPMALDRHGQT-AAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-----cCCCccccCCCCCC-HHHHH
Confidence 3445677888888888887777766555331 1123444456677654444433 3332221 1111 23334
Q ss_pred HhcCChHHHHHHHHH
Q 011472 269 VKAGLSDKALAVLRK 283 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~ 283 (485)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 456666655555444
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.90 E-value=50 Score=25.08 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=25.3
Q ss_pred HHHHHHhhhhcCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011472 138 AASYFNCVPEKLK---LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVK 185 (485)
Q Consensus 138 A~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 185 (485)
+..+|..|...+. -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555544431 23345555555555666666666666655554444
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.83 E-value=88 Score=27.21 Aligned_cols=167 Identities=10% Similarity=-0.031 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH----HHHHHHHhcCCCCCCHHHHHHHH
Q 011472 190 YNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGID----KIVAMMEADRGVVLDWTVYATAA 265 (485)
Q Consensus 190 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~~l~ 265 (485)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|- -+.+... +.+++++......++
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~-~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYD-LAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHH-HcCCCCCHHHHHHHH
Confidence 44455558888999999988765432 233445544333 3455555 667777877777777
Q ss_pred HHHHhcCChH-HHHHHHHHHHHh----hc-cCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q 011472 266 SGYVKAGLSD-KALAVLRKSEVL----MM-HNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLL 339 (485)
Q Consensus 266 ~~~~~~g~~~-~A~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 339 (485)
..+.....-+ .=.++++++.+- +. ...+......+...|.+.|++.+|...|- .+...+...+..++.-+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i---~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM---LGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH---TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH---hCCCccHHHHHHHHHHHH
Confidence 7665533211 123334443322 11 23355678888888999999888887664 111112334444444333
Q ss_pred hc---CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 340 KF---DGMESAEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 340 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
.. |...++--+ ....+--|.-.|+...|..+|+...
T Consensus 177 ~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33 332222111 1122334566789999998888765
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.92 E-value=76 Score=26.22 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011472 256 LDWTVYATAASGYVKAGLSDKALAVLRKSEV 286 (485)
Q Consensus 256 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 286 (485)
++.......+..+.+.|+.++|.++|-+...
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4455555566777777777777777766543
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.57 E-value=53 Score=27.16 Aligned_cols=90 Identities=9% Similarity=-0.101 Sum_probs=43.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----ChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 011472 88 IIIKKFRLYKRFSHALQISMWMTKKSN-FVL----TPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAY 162 (485)
Q Consensus 88 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~ 162 (485)
.-++.+....++++|.+++++..+.-. .+. ........+..-.....-.-+..+.+.+.. ..+...-...+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 346777888889988888887664310 000 001111122222333333333344444422 23344444445555
Q ss_pred HhcCCHHHHHHHHHHH
Q 011472 163 ACAKSAEKAEIIMQQM 178 (485)
Q Consensus 163 ~~~~~~~~a~~~~~~m 178 (485)
.+.|+.++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 6666666666666443
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.19 E-value=36 Score=26.81 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.2
Q ss_pred HHHHHHHHhcCCCCC
Q 011472 348 EKIFEEWESRNLCHD 362 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~ 362 (485)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444555555444
No 291
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.97 E-value=50 Score=22.94 Aligned_cols=83 Identities=10% Similarity=-0.026 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHH--HHHHhccCCHHHHHHHHHHHHHhhccCCCCccCHHHHHHHHHHHHhcCCHh
Q 011472 378 LLHKAETLIYKAQLRGTEPNVRTWYLM--ATGYLQNNQSEKGVEAMKKALVLLEAGTRWKPSKECLAACLGYYKKERDIE 455 (485)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 455 (485)
..++|..+-+-+...+ + .-...+ +..+.+.|++++|..+.+. -..||...|..|- -.+.|-.+
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~---------~c~pdlepw~ALc--e~rlGl~s 86 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNK---------LAYPDLEPWLALC--EYRLGLGS 86 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCCGGGHHHHHHH--HHHHTCHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCC---------CCCchHHHHHHHH--HHhcccHH
Confidence 4566766666666543 2 222222 3456677888887776654 2357777776654 34777777
Q ss_pred HHHHHHHHHhcCCCCCHHHH
Q 011472 456 GADYFIKLLTGKEIISADLQ 475 (485)
Q Consensus 456 ~a~~~~~~~~~~~~~~~~~~ 475 (485)
.+...+.++...|.|....|
T Consensus 87 ~le~rL~~la~sg~p~~q~F 106 (116)
T 2p58_C 87 ALESRLNRLARSQDPRIQTF 106 (116)
T ss_dssp HHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 77777777776665544443
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=52.91 E-value=90 Score=27.52 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHc-CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQT-GNYKKLDSLMHEMEEKGIDCDKYTFSILLSACA 233 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 233 (485)
...++.-|...|+.++|.+.++++...... .......+..++-+. ..-+.+.+++..+.+.|+- +-..+..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i----s~~~~~~Gf~ 88 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL----STAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS----CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHH
Confidence 567788888889999998888877532111 011111122221111 1133455556666554332 2233333322
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHH----HHHhhccCCcchhHHHHHHHHHhcC
Q 011472 234 AASDGEGIDKIVAMMEADRGVVLDWTVYATAASGY-VKAGLSDKALAVLRK----SEVLMMHNKFSRAYDFVITQYAACG 308 (485)
Q Consensus 234 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (485)
.....++.+. .++ |....+-.-+-+. ...|-.. ...++.. +...| ........++..+.+..
T Consensus 89 ------~~~~~l~Dl~--lDi-P~a~~~La~~v~~~i~~g~l~-~~~l~~~~~~~l~~~g---~~~~fl~~vl~~l~~~~ 155 (339)
T 1ug3_A 89 ------EILELAEDME--IDI-PHVWLYLAELVTPILQEGGVP-MGELFREITKPLRPLG---KAASLLLEILGLLCKSM 155 (339)
T ss_dssp ------HHHHHHHHHT--TTC-TTHHHHHHHHHGGGGSTTSCC-HHHHHHHHTTTHHHHT---CHHHHHHHHHHHHHHHH
T ss_pred ------HHHhhChHhh--cCc-cchHHHHHHHHHHHHHCCCCC-HHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHc
Confidence 1222233332 244 6655543333322 2333332 1122222 22222 22244555666777777
Q ss_pred CHHHHHHHHHH
Q 011472 309 NKDDVLRVWKR 319 (485)
Q Consensus 309 ~~~~a~~~~~~ 319 (485)
..+.+.++|+.
T Consensus 156 g~~~l~~~~~~ 166 (339)
T 1ug3_A 156 GPKKVGTLWRE 166 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77777777774
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.98 E-value=49 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567778888888888888888775
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.98 E-value=1.6e+02 Score=27.78 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcc--h-HHHHHHHHHHcCChhhHHHHHHHHHHc
Q 011472 152 PSVYIALLNAYACAKSAEKAEIIMQQMRDRG-LVKKTI--D-YNSMMNVYYQTGNYKKLDSLMHEMEEK 216 (485)
Q Consensus 152 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~-~~~l~~~~~~~~~~~~a~~~~~~m~~~ 216 (485)
..++|.+++.|...+.++.|..+..+..-.. ..++.. . +..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4568999999999999999999998874210 011111 1 223456677789999999998888765
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.58 E-value=1.3e+02 Score=26.73 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCC--HHHHHHHHHHHHhcC
Q 011472 298 DFVITQYAACGNKDDVLRVWKRYKQNLKVYNRGYICVISSLLKFDG--MESAEKIFEEWESRN 358 (485)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~ 358 (485)
..++.-|...|+.++|...++.+....--...+...+..++.+.++ .+...+++..+...|
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4445555555666666665554432111112223333334443322 344555666665553
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.45 E-value=62 Score=26.22 Aligned_cols=19 Identities=16% Similarity=-0.079 Sum_probs=10.0
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 011472 408 YLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 408 ~~~~g~~~~A~~~~~~~~~ 426 (485)
....|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555543
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.70 E-value=1.1e+02 Score=31.80 Aligned_cols=48 Identities=8% Similarity=-0.098 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccC
Q 011472 365 IPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN----VRTWYLMATGYLQNN 412 (485)
Q Consensus 365 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g 412 (485)
-|..++..+-+.+-++.+.++-+..++.--.-| ...|..++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 578888899999999999988888876422112 235777777766554
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.95 E-value=43 Score=27.35 Aligned_cols=48 Identities=10% Similarity=-0.030 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 011472 380 HKAETLIYKAQLRGTEPN-VRTWYLMATGYLQNNQSEKGVEAMKKALVL 427 (485)
Q Consensus 380 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 427 (485)
+.+..+|..|...|+--. ...|......+...|++.+|.++|+..++.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345556666665554433 444555555556666666666666666653
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=49.74 E-value=69 Score=25.81 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=6.1
Q ss_pred HhhCCHHHHHHHHH
Q 011472 130 AKVQGIEQAASYFN 143 (485)
Q Consensus 130 ~~~~~~~~A~~~~~ 143 (485)
++.|+++....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 300
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=49.73 E-value=85 Score=26.10 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHH
Q 011472 62 DPNDSMVPLLDQWVEE--GRPLDMEQLRIIIKKFRLYKR-FSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQA 138 (485)
Q Consensus 62 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 138 (485)
-....+..+++..... .-..+...+..++..+...+. ...+..+|+.+-..+.-.++...+...+..+......++.
T Consensus 88 ~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l 167 (256)
T 2jul_A 88 FTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKL 167 (256)
T ss_dssp SCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHH
Confidence 3444466666666543 234566666666665543332 3456667777655543446677777666666554455667
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHhc----C-----------CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCCh
Q 011472 139 ASYFNCVPEKLKLPSVYIALLNAYACA----K-----------SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNY 203 (485)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ll~~~~~~----~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 203 (485)
..+|+.+-..+.....+..+...+... | .-+.+..+|..+-..| -...+|.-+...+.+...+
T Consensus 168 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l 245 (256)
T 2jul_A 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENI 245 (256)
T ss_dssp HHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHH
Confidence 777776654432223333333333221 3 2455666776664332 1356889999998888888
Q ss_pred hhHHHHHHHH
Q 011472 204 KKLDSLMHEM 213 (485)
Q Consensus 204 ~~a~~~~~~m 213 (485)
-+++..|+.+
T Consensus 246 ~~~l~~~d~~ 255 (256)
T 2jul_A 246 MNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 8888887764
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.71 E-value=96 Score=24.60 Aligned_cols=112 Identities=7% Similarity=-0.130 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALL 159 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll 159 (485)
.++...-...+..+.+.|.. .+...+..+... .++......+.++.+.+..+....+.+.+. .++..+-...+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--~~~~~vr~~a~ 102 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALK--DEDGWVRQSAA 102 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 35666666666666666663 344444444432 255555555666666655333222222222 24555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 160 NAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 160 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
.++.+.++.+ +...+..+... |+...-...+.++.+.++
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCC
Confidence 6666655532 33333333322 344444444444544444
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=48.98 E-value=1.3e+02 Score=26.01 Aligned_cols=15 Identities=13% Similarity=-0.104 Sum_probs=7.2
Q ss_pred HHHhcCCHHHHHHHH
Q 011472 303 QYAACGNKDDVLRVW 317 (485)
Q Consensus 303 ~~~~~~~~~~a~~~~ 317 (485)
..+..|..+.+..++
T Consensus 245 ~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 344555555444443
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.82 E-value=1.2e+02 Score=25.57 Aligned_cols=144 Identities=8% Similarity=-0.075 Sum_probs=69.3
Q ss_pred HHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCcccHHHHHHHHHhcCCHHH
Q 011472 268 YVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNKDDVLRVWKRYKQNLK-VYNRGYICVISSLLKFDGMES 346 (485)
Q Consensus 268 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 346 (485)
.+..|+.+-+.-+++. .. .....+..-+.+.+...+..|+.+-+..+++. +.. .+...-.+.+...+..|+.+-
T Consensus 102 A~~~g~~~~v~~Ll~~-ga-~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK-NW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE---IPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHTTCHHHHHHHHHH-CG-GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT---SCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHhc-CC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCccccccCCccHHHHHHHcChHHH
Confidence 3455666555444443 11 11112212223444455566776655444442 211 122133445556667888887
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 347 AEKIFEEWESRNLCHDIRIPNHLIDAYCRRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+..+++.-...... |..-.+..+...+..|+. ++.+.+.+.|..|+.... .-...|+.+-+.-+++.-.+
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCCC
Confidence 77777654433222 222233323444455664 345556667877775542 11345666555555554443
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.73 E-value=1e+02 Score=25.33 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCCCcch-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 011472 197 YYQTGNYKKLDSLMHEMEEKGIDCDKYT-------FSILLSACA--AASDGEGIDKIVAMM 248 (485)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~ 248 (485)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4456677766666666666655544322 233333321 446666555555543
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.83 E-value=51 Score=29.14 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 011472 122 VAIRLDLIAKVQGIEQAASYFNCVPEKLKL-PSVYIALLNAYACA-KSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVY 197 (485)
Q Consensus 122 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 197 (485)
...++.-|...|+.++|...++++...... ..+...+..++-+. ..-+.+..++..+.+.|+ .+-..+..++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~Gf 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHHH
Confidence 344567788899999999999998652111 22233333333221 124556667777776643 3344444444
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.62 E-value=1.1e+02 Score=28.72 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 011472 225 FSILLSACAAASDGEGIDKIVA 246 (485)
Q Consensus 225 ~~~ll~~~~~~g~~~~a~~~~~ 246 (485)
|..|..++ +.|+++.-...++
T Consensus 345 Y~~Lv~Av-r~GdL~~F~~~L~ 365 (523)
T 4b4t_S 345 YYHLTKAV-KLGDLKKFTSTIT 365 (523)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHH
Confidence 55555543 4566655444443
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.53 E-value=1.1e+02 Score=24.41 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=37.9
Q ss_pred hHHHHHHHHH---HcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCC
Q 011472 189 DYNSMMNVYY---QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD-----GEGIDKIVAMMEADRGV 254 (485)
Q Consensus 189 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 254 (485)
.+..+|+++. +..+++.|+-++-+|++.| .|.-..-..++.+.-..|. ...|...++... ..|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~-~iG~ 84 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAE-KLGL 84 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHH-HHCT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HhCC
Confidence 3444555553 5678888888888888888 6665555555555555443 123344444444 4455
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.56 E-value=2.3e+02 Score=27.77 Aligned_cols=26 Identities=15% Similarity=0.006 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 011472 86 LRIIIKKFRLYKRFSHALQISMWMTK 111 (485)
Q Consensus 86 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 111 (485)
.-.+|-.|.|.|++++|.++.++...
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 55677778888888888888876653
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.11 E-value=1.6e+02 Score=25.84 Aligned_cols=83 Identities=6% Similarity=-0.011 Sum_probs=39.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh-----cCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH--HHHHHHH
Q 011472 301 ITQYAACGNKDDVLRVWKRYKQ-----NLKVYNRGYICVISSLLKFDGMESAEKIFEEWESRNLCHDIRIP--NHLIDAY 373 (485)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 373 (485)
+...+..|+.+-+..+++.... -...+..-.+.| ...+..|+.+- .+.+.+.|..++.... .+-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDV----AMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3344566777666666653222 111222222222 33445666554 3444455665543321 1233444
Q ss_pred HHcCCHHHHHHHHHH
Q 011472 374 CRRGLLHKAETLIYK 388 (485)
Q Consensus 374 ~~~g~~~~a~~~~~~ 388 (485)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 566777766666654
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.71 E-value=38 Score=25.79 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Q 011472 366 PNHLIDAYCRRGLLHKAETLIYKAQLRGTEPN---VRTWYLMATGYLQNNQ--SEKGVEAMKKALV 426 (485)
Q Consensus 366 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~--~~~A~~~~~~~~~ 426 (485)
...++.-|...|+.++|...++++.. |. ......+..++-+.++ .+.+..++..+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~----p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 45677888888889888888888752 43 1222333334444322 2345555555554
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.74 E-value=91 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 011472 262 ATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 44555555566666666666554
No 312
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=43.19 E-value=1.1e+02 Score=23.44 Aligned_cols=42 Identities=10% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHH
Q 011472 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (485)
+.+..+|..+-..| -...+|.-+...+.+...+-+.+..|+.
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 55666666653322 1345677777666555555555555554
No 313
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=42.82 E-value=25 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 011472 169 EKAEIIMQQMRDRGLVKKTIDYNSMMNVY 197 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 197 (485)
++|.+.|-+|.+..-.++..||...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555544332222445555555554
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.65 E-value=1.3e+02 Score=24.01 Aligned_cols=46 Identities=9% Similarity=-0.050 Sum_probs=27.5
Q ss_pred HHHHHHH---HHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 191 NSMMNVY---YQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 191 ~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
..+|+++ .+..+++.|+-++-+|++.|-.|.-..-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3345554 345777888888888887776665544444444444333
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.21 E-value=98 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 011472 262 ATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 262 ~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555555555555555555554
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.11 E-value=1.7e+02 Score=25.32 Aligned_cols=25 Identities=4% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMR 179 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~ 179 (485)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888889999888888764
No 317
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.94 E-value=21 Score=28.35 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=13.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011472 159 LNAYACAKSAEKAEIIMQQMRD 180 (485)
Q Consensus 159 l~~~~~~~~~~~a~~~~~~m~~ 180 (485)
+..|.+.|.+++|.++|++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3456666777777777766543
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.89 E-value=1.4e+02 Score=23.94 Aligned_cols=19 Identities=5% Similarity=-0.214 Sum_probs=8.6
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 011472 269 VKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~~~~~ 287 (485)
+..|+.+-+..+++.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~ 180 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSY 180 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHHHHhc
Confidence 3445554444444444443
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.37 E-value=3.3e+02 Score=28.14 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=67.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCC
Q 011472 123 AIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGN 202 (485)
Q Consensus 123 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 202 (485)
..++..|...|..+-|.++...++. ++..--.+..+|...|++++|...|++.- .|+..+.......
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~--------- 880 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL--------- 880 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG---------
T ss_pred HHHHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch---------
Confidence 3345556667777766665544443 33333446677777888888888887643 2332221111000
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcC
Q 011472 203 YKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDW----TVYATAASGYVKAG 272 (485)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 272 (485)
+....++.... .......-|..++..+-+.+-++.+.++-+....... .-|. ..|+.+.++.+..|
T Consensus 881 -~~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 -REFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -HHHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 00001111000 0001112567778888888888888877777662222 2233 34555666655443
No 320
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=39.79 E-value=1.3e+02 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011472 52 KLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFR 94 (485)
Q Consensus 52 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 94 (485)
.|-..|.+.|-+++.+..+++.+.+.|+.-|..--...+....
T Consensus 80 EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~ 122 (221)
T 3d5l_A 80 DIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMI 122 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3333444444333334444444544444444444444444433
No 321
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.36 E-value=1.2e+02 Score=22.92 Aligned_cols=51 Identities=6% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCC-CcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 011472 170 KAEIIMQQMRDRGLVK-KTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC 220 (485)
Q Consensus 170 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 220 (485)
++.++|..|...|+-- -...|..-...+-..|++++|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3677777777665542 23345566666667777777777777777766555
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.18 E-value=60 Score=24.93 Aligned_cols=52 Identities=8% Similarity=-0.042 Sum_probs=26.9
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcC--CC-CCHH-HHHHHHHHHhc
Q 011472 432 TRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGK--EI-ISAD-LQDRLLNNIRN 484 (485)
Q Consensus 432 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~-~~~~l~~~~~~ 484 (485)
.|++++.. -..++..+...++.-.|.++++.+.+. ++ ++.. +|+.|=.+...
T Consensus 27 ~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 27 GGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Confidence 35555432 233445555555666677777777665 43 3333 44444344443
No 323
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.67 E-value=57 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=9.7
Q ss_pred HHHHHhhCCHHHHHHHHHh
Q 011472 126 LDLIAKVQGIEQAASYFNC 144 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~ 144 (485)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455666555555543
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=37.08 E-value=1.1e+02 Score=27.02 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=23.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC---CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 011472 303 QYAACGNKDDVLRVWKRYKQNLKV---YNRGYICVISSLLKFDGMESAEKIFEE 353 (485)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 353 (485)
..+..|+.+-+..+++ .+..+ |..-.+. +...+..|+.+-+..+++.
T Consensus 217 ~A~~~g~~~~v~~Ll~---~gad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 217 WAILINWEDVAMRFVE---MGIDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTTTCHHHHHHHHT---TTCCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 3456666665554444 22222 2222233 3344556777776666654
No 325
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.85 E-value=1.5e+02 Score=23.31 Aligned_cols=153 Identities=12% Similarity=-0.051 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 011472 118 TPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVY 197 (485)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 197 (485)
++......+..+.+.+..+....+.+.+. .++..+-...+.++.+.++.+ +...+.++... ++...-...+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL 105 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 45555555666666665333333333332 256666666666666666533 33333333332 4555555566666
Q ss_pred HHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011472 198 YQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKA 277 (485)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 277 (485)
.+.++.+ +...+..+.. .++...-...+.++.+.|+.+ +...+..+. + .++..+-...+.++.+.+. .++
T Consensus 106 ~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 106 GQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKAL-K---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHT-T---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH-c---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 6666543 3333333432 245555555666666666644 333333333 1 1455555556666666655 344
Q ss_pred HHHHHHHHH
Q 011472 278 LAVLRKSEV 286 (485)
Q Consensus 278 ~~~~~~~~~ 286 (485)
...+..+..
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=36.38 E-value=1.5e+02 Score=23.06 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=63.0
Q ss_pred HHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcch---HHHHHHHHHH-cCCh
Q 011472 128 LIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTID---YNSMMNVYYQ-TGNY 203 (485)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~-~~~~ 203 (485)
..++.|+++....++..-... .+...-.+.+...+..|+.+.-.++.+-+.+.|..++... ++.|..++.. ..+.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 345666776655555432110 0101112344455566776666677777777777665432 2333333322 2233
Q ss_pred hhHHHHHHHHHHcCCCCCcchH--H-HHHHHHHhcCCh-HHHHHHHHHHHhc-CCCCCC
Q 011472 204 KKLDSLMHEMEEKGIDCDKYTF--S-ILLSACAAASDG-EGIDKIVAMMEAD-RGVVLD 257 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~--~-~ll~~~~~~g~~-~~a~~~~~~~~~~-~~~~~~ 257 (485)
....++.+.+++.|..++.... . +.+...+..+.. ..-..+++.+. + .|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll-~~~gad~~ 148 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF-SQSGLQLL 148 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH-TSTTCCTT
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH-HhcCCCCc
Confidence 4456677777888877665321 1 222222233322 33445666666 4 555443
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.36 E-value=1.7e+02 Score=23.59 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHc---CChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCCCC
Q 011472 186 KTIDYNSMMNVYYQT---GNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD-----GEGIDKIVAMMEADRGVVLD 257 (485)
Q Consensus 186 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 257 (485)
+...+..+|+++.+. .+++.|+-++-+|++.|-.|.-..-..++.+.-..|. ...|...++... ..|.+--
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~-~iG~PE~ 109 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFD-RVGFPEG 109 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHH-HHCTTTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HhCCCHH
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 011472 258 WTVYATAASGYVKAGLSDKALAVLRKSEVL 287 (485)
Q Consensus 258 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 287 (485)
.......+-.++..-+-..+ ..++...+.
T Consensus 110 ~i~LaqaviyLA~APKSNs~-~A~~~A~~~ 138 (213)
T 3ctd_A 110 LFFLSQASLYLAISPKSNST-KSIFKAMEA 138 (213)
T ss_dssp HHHHHHHHHHHHHSCCCCGG-GHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHH-HHHHHHHHH
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.24 E-value=18 Score=22.29 Aligned_cols=23 Identities=13% Similarity=-0.046 Sum_probs=14.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 011472 164 CAKSAEKAEIIMQQMRDRGLVKK 186 (485)
Q Consensus 164 ~~~~~~~a~~~~~~m~~~~~~p~ 186 (485)
..|+++.|+..+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777777666555554
No 329
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.89 E-value=1.4e+02 Score=24.74 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHcCChhhHHHHHHHHHHcCCCC-------CcchHHHHHHHHH--hcCChHHHHHHHHH
Q 011472 197 YYQTGNYKKLDSLMHEMEEKGIDC-------DKYTFSILLSACA--AASDGEGIDKIVAM 247 (485)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~g~~~~a~~~~~~ 247 (485)
.++.|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 345666666666666665554322 2223334444433 23565555555554
No 330
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.35 E-value=1.5e+02 Score=22.88 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCCCc
Q 011472 382 AETLIYKAQLRGTEPN 397 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~ 397 (485)
-.++++.+.+.|..|+
T Consensus 157 ~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 157 YQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3556666666666555
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.22 E-value=1.1e+02 Score=21.00 Aligned_cols=36 Identities=8% Similarity=-0.036 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhhhhcCCChHHHHHHHHHHHhcCCHHHH
Q 011472 134 GIEQAASYFNCVPEKLKLPSVYIALLNAYACAKSAEKA 171 (485)
Q Consensus 134 ~~~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 171 (485)
+.+.|.++++.++..|| .+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~--~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS--QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCT--THHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCh--HHHHHHHHHHHHcCcHHHH
Confidence 45666666666666433 4556666666555554444
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.97 E-value=1.8e+02 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 011472 405 ATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 405 i~~~~~~g~~~~A~~~~~~~~~ 426 (485)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3457778888888888887764
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.83 E-value=2.8e+02 Score=25.70 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 236 SDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLSDKALAVLRKS 284 (485)
Q Consensus 236 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 284 (485)
.+.+-|.++-. +.|++--...|..-.+.+...|++++|-++--..
T Consensus 343 ~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 343 QNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp CCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 45554444432 3355444455555566666777777776665543
No 334
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=33.82 E-value=1.2e+02 Score=20.95 Aligned_cols=59 Identities=17% Similarity=0.031 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC-HHH-HHHHHHHHHHhhccCCCCccCHHHHHHH
Q 011472 382 AETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ-SEK-GVEAMKKALVLLEAGTRWKPSKECLAAC 444 (485)
Q Consensus 382 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~-A~~~~~~~~~~~~~~~~~~p~~~~~~~l 444 (485)
|..+.+++...|+.|+.....-++..|...+- .++ +.+++.-.... .+..|+...++.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~----~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST----HKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CCCCCCHHHHHHH
Confidence 55666667777777777666666666655443 111 22221111111 4667766665544
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.46 E-value=99 Score=20.07 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=34.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhC
Q 011472 72 DQWVEEGRPLDMEQLRIIIKKFRLYK-RFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQ 133 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (485)
+.+.+.|..++..- ..++..+...+ ..-.+.++++.+.+.+ ...+..+..-.+..+.+.|
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCC
Confidence 44556676666544 34555555543 4455667777776654 3355666655565555544
No 336
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=33.43 E-value=1.7e+02 Score=22.72 Aligned_cols=76 Identities=5% Similarity=0.038 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHH
Q 011472 136 EQAASYFNCVPEKLKLPSVYIALLNAYACAK---SAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (485)
+....+|+.+-..+........+...+...| ..+++..+|..+-..+ -...+|.-.+..+... +...+.|+.
T Consensus 93 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~--dg~i~~~eF~~~~~~~---~~~~~~F~~ 167 (191)
T 1y1x_A 93 LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQR--RGSLGFDDYVELSIFV---CRVRNVFAF 167 (191)
T ss_dssp HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTC--SSSBCHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC--CCeEeHHHHHHHHHHH---HHHHHHHHH
Confidence 3445555555443322333334444444333 4566667777664322 1345677776666554 555566666
Q ss_pred HHHc
Q 011472 213 MEEK 216 (485)
Q Consensus 213 m~~~ 216 (485)
+-..
T Consensus 168 ~D~d 171 (191)
T 1y1x_A 168 YDRE 171 (191)
T ss_dssp HCTT
T ss_pred hCcC
Confidence 6443
No 337
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=32.96 E-value=1.1e+02 Score=24.73 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCC---ChHHHH
Q 011472 81 LDMEQLRIIIKKFRLYKRFS-HALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLK---LPSVYI 156 (485)
Q Consensus 81 ~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 156 (485)
.+...+..++..+...+... .+..+|+.+-..+.-.++...+...+..+......+....+|+..-..+. +..-+.
T Consensus 82 Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~ 161 (229)
T 3dd4_A 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEML 161 (229)
T ss_dssp CCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHH
Confidence 45555555555443333322 23355555544443345666666665555544444556666665544332 222233
Q ss_pred HHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHH
Q 011472 157 ALLNAYAC------------AKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMH 211 (485)
Q Consensus 157 ~ll~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 211 (485)
.++..+.. .-.-+.+..+|..+-..| -...+|.-++..+.+...+-++.+.|+
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~EF~~~~~~~~~~~~~~~~~D 226 (229)
T 3dd4_A 162 DIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNK--DGVVTIDEFIESCQKDENIMRSMQLFE 226 (229)
T ss_dssp HHHHHHHHHCC-----------CCTHHHHHHHHHCSSC--SSBCCHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCC--CCcEeHHHHHHHHHhCHHHHHHHHhcc
Confidence 33333211 112256667777664332 134677777777776555555555543
No 338
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=32.86 E-value=1.6e+02 Score=22.23 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHcCChhhHHHHHHHH
Q 011472 188 IDYNSMMNVYYQTGNYKKLDSLMHEM 213 (485)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~a~~~~~~m 213 (485)
.+|.-.+..+... +....+|+.+
T Consensus 127 i~~~eF~~~~~~~---~~~~~~F~~~ 149 (172)
T 2znd_A 127 IAFDDFIQGCIVL---QRLTDIFRRY 149 (172)
T ss_dssp EEHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CcHHHHHHHHHHH---HHHHHHHHHh
Confidence 3444444444332 3444444444
No 339
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.75 E-value=2e+02 Score=23.43 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCC
Q 011472 169 EKAEIIMQQMRDRGLVKK-TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCD 221 (485)
Q Consensus 169 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (485)
+.+..+|..|...|+--. ...|-.....+-..|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455567777766654422 33455566666667777777777777766655553
No 340
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.72 E-value=2.2e+02 Score=23.88 Aligned_cols=8 Identities=13% Similarity=-0.022 Sum_probs=3.6
Q ss_pred HHHcCCHH
Q 011472 373 YCRRGLLH 380 (485)
Q Consensus 373 ~~~~g~~~ 380 (485)
.++.|+.+
T Consensus 229 A~~~~~~~ 236 (285)
T 3d9h_A 229 VVRTASEE 236 (285)
T ss_dssp HHHTTCHH
T ss_pred HHHcCCHH
Confidence 34445543
No 341
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.52 E-value=1.2e+02 Score=23.25 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=26.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCChhHHHHHHHHHHhhC
Q 011472 73 QWVEEGRPLDMEQLRIIIKKFRLYKRFSHALQISMWMTKK--SNFVLTPADVAIRLDLIAKVQ 133 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 133 (485)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+. + ...++.++--.+..+...|
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCC
Confidence 334445554332 233444444444445555555555544 3 2234444444444444333
No 342
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.38 E-value=1.5e+02 Score=22.70 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--CcccHHHHHH-H-----HHHcCCHHHHHHHHHHHH
Q 011472 341 FDGMESAEKIFEEWESRNLCH--DIRIPNHLID-A-----YCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~ 390 (485)
.|++-+|.++++.+-.....+ +...|..||. . ..+.|+...|..++.+..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 366666666666665543333 3334444444 1 123455666666655554
No 343
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.30 E-value=1.7e+02 Score=22.48 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCC-cchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCC
Q 011472 171 AEIIMQQMRDRGLVKK-TIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDC 220 (485)
Q Consensus 171 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 220 (485)
+.++|..|...|+--. ...|..-...+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4444555544443321 2223344444444555555555555555444443
No 344
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.27 E-value=1.6e+02 Score=21.86 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 011472 213 MEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273 (485)
Q Consensus 213 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (485)
+.+.|++++.. -..++..+...+..-.|.++++.+. +.+...+..|..--++.+...|-
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCC
Confidence 44445554332 2233334444444445555666655 44444455444445555555554
No 345
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.80 E-value=1.6e+02 Score=21.82 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=29.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 251 DRGVVLDWTVYATAASGYVKAGLSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
+.|++++..= ..++..+...+..-.|.++++.+.+.+ +..+..|...-++.+...|-.
T Consensus 15 ~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 15 ETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCE
Confidence 4555554432 234455555555566666776665553 222233444444555665543
No 346
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.71 E-value=71 Score=26.41 Aligned_cols=21 Identities=0% Similarity=-0.167 Sum_probs=11.2
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 011472 93 FRLYKRFSHALQISMWMTKKS 113 (485)
Q Consensus 93 ~~~~~~~~~a~~~~~~~~~~~ 113 (485)
.++.|+.+....+++.+.+.+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 344556555555555555444
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.53 E-value=1.1e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 011472 52 KLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRF 99 (485)
Q Consensus 52 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 99 (485)
.++..+...+.+. .+.++++.+.+.+...+..|....|+.+...|-.
T Consensus 18 ~Il~~L~~~~~h~-sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFR-SAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455555544433 3666777776666666666666666666666654
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.50 E-value=4.6e+02 Score=26.89 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCChH---HHHHHHHHHHhcC-CCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 011472 87 RIIIKKFRLYKRFS---HALQISMWMTKKS-NFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAY 162 (485)
Q Consensus 87 ~~ll~~~~~~~~~~---~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~ 162 (485)
..++...|..|..+ .|.+.|+.....+ ..++.|+....+.....+.|..++-..+++..... .+..--..++.++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~-~~~~ek~~ll~aL 768 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA-QLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc-CCHHHHHHHHHHh
Confidence 34566667766543 5667777665542 23355555555555556667666655556555542 2334455677777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011472 163 ACAKSAEKAEIIMQQMRDR 181 (485)
Q Consensus 163 ~~~~~~~~a~~~~~~m~~~ 181 (485)
+...+.+...++++.....
T Consensus 769 ~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp TTCCCHHHHHHHHHHTTCT
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7777777777777666543
No 349
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.05 E-value=1.6e+02 Score=22.04 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHH
Q 011472 236 SDGEGIDKIVAMME 249 (485)
Q Consensus 236 g~~~~a~~~~~~~~ 249 (485)
+..-.|.++++.+.
T Consensus 40 ~~~~sa~ei~~~l~ 53 (150)
T 2xig_A 40 GTHLSPEEITHSIR 53 (150)
T ss_dssp SSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 33344444444444
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.77 E-value=1.6e+02 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=16.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 011472 237 DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGL 273 (485)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 273 (485)
..-.|.++++.+. +.+...+..|..--++.+...|-
T Consensus 33 ~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALM-EAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444555555554 33333444444444444444443
No 351
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.00 E-value=1.4e+02 Score=20.29 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011472 400 TWYLMATGYLQNNQSEKGVEAMKKALV 426 (485)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 426 (485)
.+.-....+.+.|++++|++..+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555667777777777666555543
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.85 E-value=1.9e+02 Score=21.63 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=33.6
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 011472 177 QMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASD 237 (485)
Q Consensus 177 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 237 (485)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 4556676644332 34555555666677788888888776655555544444455555543
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.66 E-value=3.7e+02 Score=24.90 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=6.5
Q ss_pred HHHHhhCCHHHHHHHH
Q 011472 127 DLIAKVQGIEQAASYF 142 (485)
Q Consensus 127 ~~~~~~~~~~~A~~~~ 142 (485)
+.+...|++++|.++-
T Consensus 369 ~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 369 NALFAQGNYSEAAKVA 384 (494)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3333444444444433
No 354
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=27.65 E-value=2e+02 Score=21.83 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 011472 204 KKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEGIDKIVAMM 248 (485)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 248 (485)
+.+..+|..+-..| -...+|..++..+.+...+-.....|+.+
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 55666666663322 13467888888877777777777776654
No 355
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.32 E-value=1.8e+02 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.6
Q ss_pred HhcCChHHHHHHHHH
Q 011472 269 VKAGLSDKALAVLRK 283 (485)
Q Consensus 269 ~~~g~~~~A~~~~~~ 283 (485)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444443
No 356
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.73 E-value=2.2e+02 Score=22.06 Aligned_cols=81 Identities=7% Similarity=-0.114 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHH
Q 011472 80 PLDMEQLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALL 159 (485)
Q Consensus 80 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll 159 (485)
.++...-...+..+.+.+..+ +...+-.+... .++......+..++..+..+....+.+.+.. ++..+-...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d--~~~~vr~~a~ 97 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALKD--EDGWVRQSAA 97 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChh-HHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 345555555555555555432 23333333332 2444444445555555543322222222221 4444545555
Q ss_pred HHHHhcCC
Q 011472 160 NAYACAKS 167 (485)
Q Consensus 160 ~~~~~~~~ 167 (485)
.++.+.++
T Consensus 98 ~aL~~~~~ 105 (201)
T 3ltj_A 98 VALGQIGD 105 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 55555544
No 357
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=26.72 E-value=2.1e+02 Score=21.78 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=22.0
Q ss_pred hHHHHHhhcCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 011472 50 MYKLYRMLSPMGDPNDSMVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRFS 100 (485)
Q Consensus 50 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 100 (485)
++..+..|+....+ -.++-+.+.+.|+++ .....+|.-+...|-.+
T Consensus 20 ~~~Al~~Ls~r~~s---~~EL~~KL~~kg~~~--e~Ie~vl~~l~~~g~ld 65 (162)
T 3dfg_A 20 VQRALGLLVHREHS---KKELNRKLQARGIEP--EAAQAAVERLAGEGWQD 65 (162)
T ss_dssp HHHHHHHHHHSCCC---HHHHHHHHHHTTCCH--HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhchhhh---HHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCCC
Confidence 55566666554322 334555666655532 23444444444444333
No 358
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.54 E-value=2.2e+02 Score=21.88 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011472 116 VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKL---KLPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKK 186 (485)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 186 (485)
..++.-+.+.+...-..++ +..+|..|...+ .-...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 60 knD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3455555555533333333 556777776654 2345688888888889999999999999988877764
No 359
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.38 E-value=1.7e+02 Score=21.82 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHH
Q 011472 238 GEGIDKIVAMMEADRGVVLDWTV 260 (485)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~ 260 (485)
.-.|.++++.+. +.+...+..|
T Consensus 33 h~ta~ei~~~l~-~~~~~is~~T 54 (145)
T 3eyy_A 33 HATPDDILGEVR-KTASGINIST 54 (145)
T ss_dssp SBCHHHHHHHHH-TTCTTCCHHH
T ss_pred CCCHHHHHHHHH-hhCCCCCHhH
Confidence 344555555555 4444444444
No 360
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.18 E-value=1.5e+02 Score=21.76 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=30.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCC
Q 011472 73 QWVEEGRPLDMEQLRIIIKKFRLYK-RFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQG 134 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (485)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+ ...++.+..-.+..+...|-
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCc
Confidence 3444555554432 23344444444 4555666666666554 33555555555566655554
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.04 E-value=2.3e+02 Score=22.52 Aligned_cols=53 Identities=6% Similarity=-0.075 Sum_probs=25.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhhCCHHHHHHHHHh
Q 011472 90 IKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKVQGIEQAASYFNC 144 (485)
Q Consensus 90 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 144 (485)
+...++.|+.+....+++.-.... ...+.. -...+...+..|+.+-...+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLA-TRTDQD-SRTALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGG-GCCCTT-SCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhh-hcCCCC-CCCHHHHHHHcCcHHHHHHHHHh
Confidence 445566777777776665432210 000111 11123444566666665555544
No 362
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.96 E-value=1.8e+02 Score=21.63 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 011472 177 QMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAAS 236 (485)
Q Consensus 177 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 236 (485)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455666655433 33444444555 6677778877777655555544444444555444
No 363
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.92 E-value=94 Score=22.67 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=13.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 445 LGYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 445 ~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
+..+...+..-.|.++++.+.+.++
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~ 41 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGE 41 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCC
Confidence 3444444555566666666665554
No 364
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.81 E-value=1.1e+02 Score=22.20 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 011472 67 MVPLLDQWVEEGRPLDMEQLRIIIKKFRLYKRF 99 (485)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 99 (485)
+.++++.+.+.+...+..|....++.+...|-.
T Consensus 29 a~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 29 AQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 556666666555555666655555665555543
No 365
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.77 E-value=2.5e+02 Score=22.17 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.3
Q ss_pred hcCCHHHHHHHHH
Q 011472 164 CAKSAEKAEIIMQ 176 (485)
Q Consensus 164 ~~~~~~~a~~~~~ 176 (485)
+.|+.+....+++
T Consensus 11 ~~g~~~~v~~Ll~ 23 (228)
T 2dzn_A 11 MENEFFKVQELLH 23 (228)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHh
Confidence 3444444443333
No 366
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.75 E-value=1.9e+02 Score=21.61 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 011472 213 MEEKGIDCDKYTFSILLSACAAAS-DGEGIDKIVAMMEADRGVVLDWTVYATAASGYVKAGLS 274 (485)
Q Consensus 213 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 274 (485)
+.+.|++++..= ..++..+...+ ..-.|.++++.+. +.+...+..|..--+..+...|-+
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLI-DLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHCCcE
Confidence 444555544322 22333343333 4445666666665 444444555544455555555543
No 367
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.69 E-value=2.3e+02 Score=21.95 Aligned_cols=128 Identities=5% Similarity=-0.041 Sum_probs=63.8
Q ss_pred HHHHHhhCCHHHHHHHHHhhhhcCC-----ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCcchH--H-HHHHH
Q 011472 126 LDLIAKVQGIEQAASYFNCVPEKLK-----LPSVYIALLNAYAC-AKSAEKAEIIMQQMRDRGLVKKTIDY--N-SMMNV 196 (485)
Q Consensus 126 ~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~--~-~l~~~ 196 (485)
+...+..|..+.-.++.+.+.+.+. +..-++.|..++.. ..+.....++.+.+.+.|..++.... . +.+..
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~ 121 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGG
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHH
Confidence 4455566666554455555555442 22223334333322 33455567778888888877665432 1 23333
Q ss_pred HHHcCCh-hhHHHHHHHHHH-cCCCCCcchH--HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011472 197 YYQTGNY-KKLDSLMHEMEE-KGIDCDKYTF--SILLSACAAASDGEGIDKIVAMMEADRGV 254 (485)
Q Consensus 197 ~~~~~~~-~~a~~~~~~m~~-~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 254 (485)
.+..+.. ..-..+++.+.+ .|..++.... .+-+....+.|..+-+.-+.+.+. +.+.
T Consensus 122 A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~-~~~~ 182 (186)
T 3t8k_A 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK-KYNL 182 (186)
T ss_dssp GGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH-HHTC
T ss_pred HHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH-HHhc
Confidence 3333332 344567777787 7877665321 122333445566554444444443 4444
No 368
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.63 E-value=1.4e+02 Score=18.80 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHhh
Q 011472 85 QLRIIIKKFRLYKRFSHALQISMWMTKKSNFVLTPADVAIRLDLIAKV 132 (485)
Q Consensus 85 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (485)
.++.++..+++..-.++++..+++..+.|. ++.+.|.-..+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~--I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT--IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 467778888888888999999999998884 5666666655555543
No 369
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.30 E-value=1.8e+02 Score=21.23 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=7.6
Q ss_pred HHhhCCHHHHHHHHHh
Q 011472 129 IAKVQGIEQAASYFNC 144 (485)
Q Consensus 129 ~~~~~~~~~A~~~~~~ 144 (485)
.++.|+.+....+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555444
No 370
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.04 E-value=2e+02 Score=21.57 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=30.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhccCCcchhHHHHHHHHHhcCCH
Q 011472 251 DRGVVLDWTVYATAASGYVKAG-LSDKALAVLRKSEVLMMHNKFSRAYDFVITQYAACGNK 310 (485)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 310 (485)
+.|++++..=. .++..+...+ ..-.|.++++.+.+.+ +..+..|.-.-++.+...|-.
T Consensus 10 ~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 10 DAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 55665554322 3444444444 5566777777776654 222334444445566666654
No 371
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.42 E-value=1e+02 Score=22.86 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=10.8
Q ss_pred HHHHhcCCHhHHHHHHHHHhcCCC
Q 011472 446 GYYKKERDIEGADYFIKLLTGKEI 469 (485)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~ 469 (485)
..+...++.-.|.++++.+.+.++
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~ 44 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGD 44 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCC
Confidence 333333444445555555544443
No 372
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.31 E-value=3.4e+02 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHh-CCC
Q 011472 166 KSAEKAEIIMQQMRD-RGL 183 (485)
Q Consensus 166 ~~~~~a~~~~~~m~~-~~~ 183 (485)
|+.++|.+++.++.. .|.
T Consensus 241 ~~~~~a~~~l~~l~~~~g~ 259 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGM 259 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 455555555555544 443
No 373
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.26 E-value=2.7e+02 Score=21.73 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011472 259 TVYATAASGYVKAGLSDKALAVLRKSE 285 (485)
Q Consensus 259 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 285 (485)
..|+.+...+...|+.++|+..+..--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 345556666666777777777766543
No 374
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.25 E-value=4.2e+02 Score=23.97 Aligned_cols=93 Identities=8% Similarity=-0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHhhCCHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 011472 87 RIIIKKFRLYKR---FSHALQISMWMTKKSNF-VLTPADVAIRLDLIAKVQGIEQAASYFNCVPEKLKLPSVYIALLNAY 162 (485)
Q Consensus 87 ~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ll~~~ 162 (485)
..++...|..|. .+.|.+.|+.....+.. +++|+....+.....+ .-++-..+++..... .+..--..++.++
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~--~~~~~~~l~~~y~~s-~~~~ek~~ll~aL 277 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ--STEGWDFLYSKYQFS-LSSTEKSQIEFAL 277 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT--SHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC--CHHHHHHHHHHHhcC-CCHHHHHHHHHHc
Confidence 455666667665 33566777766654321 3445544444333222 222223333333332 3444456677777
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011472 163 ACAKSAEKAEIIMQQMRDRG 182 (485)
Q Consensus 163 ~~~~~~~~a~~~~~~m~~~~ 182 (485)
+...+.+...++++......
T Consensus 278 ~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 278 CRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp TTCSCHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 77777777777776666544
No 375
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.68 E-value=3e+02 Score=22.01 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHh
Q 011472 369 LIDAYC---RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQS-----EKGVEAMKKALVL 427 (485)
Q Consensus 369 l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~ 427 (485)
+|+++. +..+.|.|+-.+-+|++.| .|....-..++.+.-.-|.. ..|...++.....
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i 82 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL 82 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 455554 3578888888888888888 76666666666666666642 3444555555553
No 376
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.64 E-value=2.6e+02 Score=21.38 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CcchHHHHHH-H-----HHHcCChhhHHHHHHHHHH
Q 011472 155 YIALLNAYACAKSAEKAEIIMQQMRDRGLVK--KTIDYNSMMN-V-----YYQTGNYKKLDSLMHEMEE 215 (485)
Q Consensus 155 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~m~~ 215 (485)
|..-+..| ..|++-+|.++|+..=.....| ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333433 3488888888888876554344 4445666666 2 2356777777777777655
No 377
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.64 E-value=4.2e+02 Score=23.77 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC----------------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011472 335 ISSLLKFDGMESAEKIFEEWESRNL----------------CHDIRIPNHLIDAYCRRGLLHKAETLIYKAQ 390 (485)
Q Consensus 335 i~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 390 (485)
+..+....+.+++.+.++.+...-. ..-..+...+.+.|...|+.++|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444555666666666665532210 0011122334455556666666666666554
No 378
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.61 E-value=4.5e+02 Score=24.11 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=25.8
Q ss_pred HHHHHHHHH---HcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 011472 190 YNSMMNVYY---QTGNYKKLDSLMHEMEEKGIDCDKYTFSILLSAC 232 (485)
Q Consensus 190 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 232 (485)
+..++.++. +.++.+.|+.++.+|.+.|..|....-..+..+.
T Consensus 255 ~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 255 FYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333444443 4577888888888888887766544333333333
No 379
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.58 E-value=2.8e+02 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011472 398 VRTWYLMATGYLQNNQSEKGVEAMKKAL 425 (485)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 425 (485)
...|+.+...+.+.|+.++|+..+....
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3445666666777777777777776554
No 380
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.47 E-value=79 Score=19.35 Aligned_cols=21 Identities=0% Similarity=-0.240 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHHhhccCC
Q 011472 272 GLSDKALAVLRKSEVLMMHNK 292 (485)
Q Consensus 272 g~~~~A~~~~~~~~~~~~~~~ 292 (485)
-+++.|...|.++...+..|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCG
T ss_pred CCHHHHHHHHHHHHHcCCCCH
Confidence 455666666666555544444
No 381
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=22.21 E-value=1.5e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 011472 156 IALLNAYACAKSAEKAEIIMQQ 177 (485)
Q Consensus 156 ~~ll~~~~~~~~~~~a~~~~~~ 177 (485)
|.+++.|...|+++.|.+++++
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~r 59 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVK 59 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHH
Confidence 3444444445555555555544
No 382
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=22.08 E-value=76 Score=26.71 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=8.8
Q ss_pred hhHhhhcccccccccccc
Q 011472 13 IKAQLGLGNVLDSSSSYS 30 (485)
Q Consensus 13 ~~~~~~~~~~~~a~~~f~ 30 (485)
++..+..|+++-.+.+.+
T Consensus 15 L~~A~~~G~~~~v~~LL~ 32 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLE 32 (269)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444455555554444443
No 383
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=21.97 E-value=3.3e+02 Score=22.28 Aligned_cols=12 Identities=0% Similarity=-0.200 Sum_probs=4.9
Q ss_pred hhCCHHHHHHHH
Q 011472 131 KVQGIEQAASYF 142 (485)
Q Consensus 131 ~~~~~~~A~~~~ 142 (485)
..|+.+-+..++
T Consensus 45 ~~g~~~~v~~Ll 56 (261)
T 2xai_A 45 LGGHLSCVKILL 56 (261)
T ss_dssp HHTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 344444433333
No 384
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.37 E-value=3.9e+02 Score=22.88 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCCHHHHHHHHH
Q 011472 348 EKIFEEWESRNLCHDIRIP--NHLIDAYCRRGLLHKAETLIYKAQLRGTEPN---VRTWYLMATGYLQNNQSEKGVEAMK 422 (485)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 422 (485)
..+.+.+.+.|..++.... .+.+...+..|..+.+..+++. .|..++ ..-.+.|.. -++.|+.+-+ +
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~iv----~ 290 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKKIA----E 290 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHHHH----H
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHHHH----H
Confidence 3444555666766654322 1234445667777665544431 233332 222233333 3345665433 3
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHHHhcCCHhHHHHHHHHHhcCC
Q 011472 423 KALVLLEAGTRWKPSKECLAACLGYYKKERDIEGADYFIKLLTGKE 468 (485)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (485)
.+++ .|..+|..+ .+...++.|+.+ +.+.+.+.|
T Consensus 291 ~Ll~-----~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 291 LLCK-----RGASTDCGD---LVMTARRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHHT-----TSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHH-----CCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc
Confidence 3344 266665443 233345566654 344455555
No 385
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.19 E-value=1.2e+02 Score=21.77 Aligned_cols=18 Identities=11% Similarity=-0.018 Sum_probs=9.4
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011472 232 CAAASDGEGIDKIVAMME 249 (485)
Q Consensus 232 ~~~~g~~~~a~~~~~~~~ 249 (485)
+...+|++.|.++...+.
T Consensus 71 al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344555555555555544
No 386
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.16 E-value=3.1e+02 Score=21.71 Aligned_cols=85 Identities=7% Similarity=-0.095 Sum_probs=42.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhccCCHHHHHHHHHHHHHhhccCCCCcc---------CH
Q 011472 371 DAYCRRGLLHKAETLIYKAQLRGTEPNVR---TWYLMATGYLQNNQSEKGVEAMKKALVLLEAGTRWKP---------SK 438 (485)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p---------~~ 438 (485)
...+..|+.+-+ +.+.+.|..++.. -. .-+...+..|+.+-+..+++.+++. |..+ |.
T Consensus 126 ~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~-----g~~~~~~~~~~~~~~ 195 (232)
T 2rfa_A 126 SFAACVGSEEIV----RLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSY-----DGGDHLKSLELVPNN 195 (232)
T ss_dssp HHHHHHTCHHHH----HHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHT-----TCSCSSCCGGGCCCT
T ss_pred HHHHHcCCHHHH----HHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhc-----CCchhhhhhhccCCC
Confidence 334455665443 3344455554422 12 2234445667777776666666663 3322 22
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHhc
Q 011472 439 ECLAACLGYYKKERDIEGADYFIKLLTG 466 (485)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (485)
.-.. -+...++.|+.+-+..+++.-..
T Consensus 196 ~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 196 QGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 2222 23344567777766666665443
No 387
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.11 E-value=2.2e+02 Score=20.44 Aligned_cols=31 Identities=10% Similarity=-0.145 Sum_probs=16.9
Q ss_pred CChhHHHHH--HHHHHhhCCHHHHHHHHHhhhh
Q 011472 117 LTPADVAIR--LDLIAKVQGIEQAASYFNCVPE 147 (485)
Q Consensus 117 ~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~ 147 (485)
+++.+...+ +..+...++++.|..+.-.+..
T Consensus 57 Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 57 LSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355554444 3334456666666666666555
No 388
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.09 E-value=1.8e+02 Score=18.79 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHc
Q 011472 204 KKLDSLMHEMEEK 216 (485)
Q Consensus 204 ~~a~~~~~~m~~~ 216 (485)
-.+.++++.+.+.
T Consensus 34 ~s~~el~~~l~~~ 46 (83)
T 2fu4_A 34 VSAEDLYKRLIDM 46 (83)
T ss_dssp BCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444433
No 389
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.83 E-value=3.2e+02 Score=21.74 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=25.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCC
Q 011472 375 RRGLLHKAETLIYKAQLRGTEPNVRTWYLMATGYLQNNQ 413 (485)
Q Consensus 375 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 413 (485)
+..+.|.|+-.+-+|++.|-.|....-..++.+.-.-|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 346777777777778777766665555555555555443
No 390
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.68 E-value=2.6e+02 Score=20.63 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.5
Q ss_pred HcCCHH
Q 011472 375 RRGLLH 380 (485)
Q Consensus 375 ~~g~~~ 380 (485)
..|+.+
T Consensus 84 ~~~~~~ 89 (165)
T 3twr_A 84 SYGHYE 89 (165)
T ss_dssp HTTCHH
T ss_pred HcCcHH
Confidence 344443
No 391
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.52 E-value=3.6e+02 Score=22.13 Aligned_cols=144 Identities=9% Similarity=0.063 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhc-CCCCCChhHHHHHHHHHHh-hCCHHHHHHHHHhhhhcCCChHHHH---HHHHHHHhcCCHHHHHHHH
Q 011472 101 HALQISMWMTKK-SNFVLTPADVAIRLDLIAK-VQGIEQAASYFNCVPEKLKLPSVYI---ALLNAYACAKSAEKAEIIM 175 (485)
Q Consensus 101 ~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~ 175 (485)
+...+++..... +.-.++...+..++..+.. ......+..+|..+-..+.....+. .++..+......++...+|
T Consensus 92 ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F 171 (256)
T 2jul_A 92 ELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAF 171 (256)
T ss_dssp HHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHH
Confidence 344444444332 2123566666666555532 2334567778887765543333333 3343333333455666667
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHHc----C-----------ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHH
Q 011472 176 QQMRDRGLVKKTIDYNSMMNVYYQT----G-----------NYKKLDSLMHEMEEKGIDCDKYTFSILLSACAAASDGEG 240 (485)
Q Consensus 176 ~~m~~~~~~p~~~~~~~l~~~~~~~----~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 240 (485)
..+-..| -...++.-+...+... | .-+.+..+|..+-..| -...++..++..+.+...+-.
T Consensus 172 ~~~D~d~--dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~ 247 (256)
T 2jul_A 172 NLYDINK--DGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMN 247 (256)
T ss_dssp HHTCCSS--SSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHH
T ss_pred HHhCCCC--CCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHH
Confidence 6553222 1233444444444332 3 1234455555543221 134688999999998888888
Q ss_pred HHHHHHHH
Q 011472 241 IDKIVAMM 248 (485)
Q Consensus 241 a~~~~~~~ 248 (485)
+...|+.+
T Consensus 248 ~l~~~d~~ 255 (256)
T 2jul_A 248 SMQLFENV 255 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHhhccc
Confidence 88888764
No 392
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=20.00 E-value=3.4e+02 Score=21.66 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhcCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHcCChhhHHHHHHH
Q 011472 136 EQAASYFNCVPEKLK---LPSVYIALLNAYACAKSAEKAEIIMQQMRDRGLVKKTIDYNSMMNVYYQTGNYKKLDSLMHE 212 (485)
Q Consensus 136 ~~A~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 212 (485)
+.....|+.+-..+. +..-+..++..+...-..+++..++..+- .| -...+|.-.+..+.... ...+.|+.
T Consensus 117 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~--dg~I~~~eF~~~~~~l~---~~~~~F~~ 190 (220)
T 3sjs_A 117 ELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RG--MAFCDLNCWIAICAFAA---QTRSAYQM 190 (220)
T ss_dssp HHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC-----CCSEEHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CC--CCcCcHHHHHHHHHHHH---HHHHHHHH
Confidence 344555555543332 22223333333333334556666776665 32 14567777777766653 56666666
Q ss_pred H
Q 011472 213 M 213 (485)
Q Consensus 213 m 213 (485)
.
T Consensus 191 ~ 191 (220)
T 3sjs_A 191 I 191 (220)
T ss_dssp H
T ss_pred h
Confidence 6
Done!