Query 011473
Match_columns 485
No_of_seqs 490 out of 3544
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 01:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0882 Cyclophilin-related pe 100.0 2.8E-98 6E-103 716.2 31.4 469 1-482 88-557 (558)
2 KOG0881 Cyclophilin type pepti 100.0 1.5E-50 3.3E-55 322.7 10.4 157 327-483 7-163 (164)
3 cd01928 Cyclophilin_PPIL3_like 100.0 3.5E-45 7.7E-50 321.6 18.7 153 330-482 1-153 (153)
4 KOG0546 HSP90 co-chaperone CPR 100.0 3.7E-46 8E-51 352.4 12.2 151 333-484 17-179 (372)
5 cd01923 cyclophilin_RING cyclo 100.0 1.8E-44 4E-49 319.4 19.3 153 332-484 2-154 (159)
6 cd01927 cyclophilin_WD40 cyclo 100.0 9.9E-45 2.2E-49 317.2 17.3 148 333-480 1-148 (148)
7 KOG0883 Cyclophilin type, U bo 100.0 1.9E-45 4.2E-50 346.0 13.1 158 325-482 273-430 (518)
8 KOG0880 Peptidyl-prolyl cis-tr 100.0 5.3E-45 1.1E-49 315.0 14.2 146 335-481 50-200 (217)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 1.6E-44 3.5E-49 311.9 16.9 148 332-483 2-157 (158)
10 KOG0884 Similar to cyclophilin 100.0 6.4E-45 1.4E-49 288.7 12.3 154 330-483 1-155 (161)
11 cd01922 cyclophilin_SpCYP2_lik 100.0 1.4E-43 3E-48 309.0 16.9 146 333-479 1-146 (146)
12 cd01921 cyclophilin_RRM cyclop 100.0 5.6E-43 1.2E-47 312.5 18.3 152 333-484 1-160 (166)
13 cd01925 cyclophilin_CeCYP16-li 100.0 5.8E-42 1.3E-46 306.9 19.8 159 326-484 2-161 (171)
14 KOG0879 U-snRNP-associated cyc 100.0 1.2E-42 2.6E-47 280.8 9.4 146 335-481 21-175 (177)
15 PTZ00221 cyclophilin; Provisio 100.0 3.8E-40 8.2E-45 306.2 19.5 155 327-485 50-221 (249)
16 PRK10791 peptidyl-prolyl cis-t 100.0 1E-39 2.2E-44 289.5 18.6 150 332-484 2-164 (164)
17 PRK10903 peptidyl-prolyl cis-t 100.0 1.6E-39 3.4E-44 294.7 19.9 155 327-484 26-190 (190)
18 PLN03149 peptidyl-prolyl isome 100.0 1.5E-39 3.2E-44 294.2 19.0 146 337-483 31-186 (186)
19 cd01926 cyclophilin_ABH_like c 100.0 2.3E-39 4.9E-44 288.9 16.7 145 335-481 11-164 (164)
20 PTZ00060 cyclophilin; Provisio 100.0 6E-39 1.3E-43 290.0 17.6 147 335-483 26-182 (183)
21 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.9E-39 4E-44 304.9 13.6 163 322-484 5-168 (439)
22 cd01920 cyclophilin_EcCYP_like 100.0 2E-38 4.2E-43 279.7 17.2 144 334-480 2-155 (155)
23 cd00317 cyclophilin cyclophili 100.0 3.7E-37 8.1E-42 270.9 17.1 146 333-479 1-146 (146)
24 KOG0415 Predicted peptidyl pro 100.0 2E-37 4.3E-42 288.8 13.6 155 330-484 1-163 (479)
25 KOG0111 Cyclophilin-type pepti 100.0 7.5E-37 1.6E-41 267.8 10.4 151 330-482 142-296 (298)
26 cd01924 cyclophilin_TLP40_like 100.0 1.1E-35 2.4E-40 266.6 16.6 140 335-485 3-176 (176)
27 PF00160 Pro_isomerase: Cyclop 100.0 3.9E-35 8.4E-40 260.8 17.6 148 332-482 2-155 (155)
28 KOG0271 Notchless-like WD40 re 100.0 1E-32 2.2E-37 260.5 19.0 249 21-300 123-449 (480)
29 KOG0272 U4/U6 small nuclear ri 100.0 5.9E-31 1.3E-35 251.7 12.4 220 24-288 230-458 (459)
30 KOG0263 Transcription initiati 100.0 2.4E-29 5.1E-34 257.4 16.8 194 20-293 458-652 (707)
31 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-28 2.8E-33 235.7 16.2 194 22-295 184-380 (459)
32 KOG0865 Cyclophilin type pepti 100.0 2.6E-29 5.5E-34 219.1 7.4 146 335-482 14-166 (167)
33 KOG0271 Notchless-like WD40 re 100.0 8.4E-28 1.8E-32 227.4 17.8 210 12-288 204-479 (480)
34 KOG0286 G-protein beta subunit 100.0 8.2E-27 1.8E-31 214.1 21.2 186 25-288 156-343 (343)
35 KOG0293 WD40 repeat-containing 100.0 2.5E-27 5.3E-32 226.1 17.3 241 21-302 232-482 (519)
36 KOG0279 G protein beta subunit 99.9 3.6E-26 7.9E-31 208.7 22.7 258 8-351 12-276 (315)
37 KOG0266 WD40 repeat-containing 99.9 8E-26 1.7E-30 235.1 24.8 201 21-295 211-414 (456)
38 KOG0279 G protein beta subunit 99.9 2.9E-26 6.2E-31 209.4 18.1 232 22-289 72-312 (315)
39 KOG0263 Transcription initiati 99.9 4.5E-25 9.7E-30 226.2 19.8 196 22-295 387-612 (707)
40 KOG0281 Beta-TrCP (transducin 99.9 4.6E-26 1E-30 213.2 11.2 193 27-293 209-431 (499)
41 KOG0266 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 225.6 22.5 197 22-295 168-369 (456)
42 KOG0316 Conserved WD40 repeat- 99.9 2.9E-25 6.2E-30 198.3 14.3 224 24-295 28-262 (307)
43 KOG0291 WD40-repeat-containing 99.9 5.3E-24 1.1E-28 216.5 24.9 189 25-292 320-510 (893)
44 KOG0282 mRNA splicing factor [ 99.9 1.5E-25 3.2E-30 218.2 10.4 222 24-288 226-503 (503)
45 KOG0284 Polyadenylation factor 99.9 2.7E-25 6E-30 212.1 10.9 220 22-295 147-385 (464)
46 KOG0285 Pleiotropic regulator 99.9 3.8E-24 8.3E-29 201.2 17.6 213 15-308 152-366 (460)
47 KOG0273 Beta-transducin family 99.9 7E-24 1.5E-28 205.8 18.9 216 22-296 244-488 (524)
48 PTZ00420 coronin; Provisional 99.9 9.2E-23 2E-27 213.4 28.9 217 30-291 49-294 (568)
49 KOG0276 Vesicle coat complex C 99.9 1.6E-23 3.4E-28 209.1 21.5 207 1-291 47-258 (794)
50 KOG0319 WD40-repeat-containing 99.9 1.8E-24 4E-29 219.7 14.1 188 25-290 424-619 (775)
51 KOG0315 G-protein beta subunit 99.9 2E-23 4.3E-28 188.0 18.5 229 22-295 49-293 (311)
52 KOG0291 WD40-repeat-containing 99.9 2.3E-23 4.9E-28 212.0 21.2 223 21-294 358-616 (893)
53 KOG0645 WD40 repeat protein [G 99.9 4E-22 8.7E-27 181.7 24.1 190 25-290 27-225 (312)
54 KOG0296 Angio-associated migra 99.9 3.5E-22 7.5E-27 188.7 22.9 239 20-289 71-397 (399)
55 KOG1446 Histone H3 (Lys4) meth 99.9 3.1E-22 6.7E-27 186.3 22.2 233 20-295 21-267 (311)
56 KOG0295 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 191.9 19.0 196 9-289 194-405 (406)
57 PTZ00421 coronin; Provisional 99.9 4.2E-22 9E-27 207.2 24.9 194 24-293 87-293 (493)
58 KOG0273 Beta-transducin family 99.9 2.9E-22 6.2E-27 194.6 21.6 171 4-232 313-494 (524)
59 KOG0286 G-protein beta subunit 99.9 4.6E-22 9.9E-27 183.0 21.0 213 6-295 89-308 (343)
60 KOG0295 WD40 repeat-containing 99.9 3.6E-23 7.7E-28 195.2 13.4 220 22-292 117-366 (406)
61 KOG0265 U5 snRNP-specific prot 99.9 5.4E-22 1.2E-26 183.2 19.9 244 22-318 56-326 (338)
62 KOG0281 Beta-TrCP (transducin 99.9 1.1E-22 2.4E-27 190.6 15.3 186 56-295 196-393 (499)
63 KOG0284 Polyadenylation factor 99.9 4.4E-23 9.6E-28 197.1 11.7 190 21-291 104-295 (464)
64 KOG0315 G-protein beta subunit 99.9 1.2E-21 2.6E-26 176.6 18.7 217 24-290 9-245 (311)
65 KOG0275 Conserved WD40 repeat- 99.9 8.5E-23 1.8E-27 189.8 10.3 234 22-307 222-485 (508)
66 PTZ00421 coronin; Provisional 99.9 8.8E-21 1.9E-25 197.3 25.6 201 23-292 30-247 (493)
67 KOG0318 WD40 repeat stress pro 99.9 4.3E-21 9.3E-26 188.7 21.0 270 21-295 198-565 (603)
68 KOG0265 U5 snRNP-specific prot 99.9 9.6E-21 2.1E-25 174.9 19.9 205 20-286 97-334 (338)
69 KOG0294 WD40 repeat-containing 99.9 8.6E-21 1.9E-25 176.3 17.1 215 24-290 52-281 (362)
70 KOG0310 Conserved WD40 repeat- 99.9 5.7E-21 1.2E-25 186.6 16.7 188 23-291 78-269 (487)
71 PLN00181 protein SPA1-RELATED; 99.9 4.5E-20 9.8E-25 205.3 25.1 187 24-292 544-740 (793)
72 KOG0283 WD40 repeat-containing 99.9 1.8E-20 3.9E-25 194.0 20.1 211 21-307 275-546 (712)
73 KOG0277 Peroxisomal targeting 99.9 1.1E-20 2.5E-25 170.8 15.9 212 26-289 74-308 (311)
74 KOG0319 WD40-repeat-containing 99.9 9.8E-21 2.1E-25 192.7 17.1 246 23-354 375-624 (775)
75 KOG0640 mRNA cleavage stimulat 99.9 3.5E-21 7.6E-26 178.3 12.6 163 22-231 181-346 (430)
76 KOG0292 Vesicle coat complex C 99.9 8.3E-21 1.8E-25 196.1 16.4 228 24-307 20-252 (1202)
77 KOG0318 WD40 repeat stress pro 99.9 6.9E-20 1.5E-24 180.2 21.8 188 24-229 159-359 (603)
78 cd00200 WD40 WD40 domain, foun 99.9 1.9E-19 4.1E-24 172.3 24.0 226 22-291 18-250 (289)
79 KOG0292 Vesicle coat complex C 99.8 7.7E-20 1.7E-24 189.0 20.2 199 22-243 60-301 (1202)
80 KOG0289 mRNA splicing factor [ 99.8 1.9E-19 4.2E-24 173.4 21.5 240 11-346 261-503 (506)
81 KOG0645 WD40 repeat protein [G 99.8 1.6E-19 3.5E-24 164.8 19.5 217 20-289 68-310 (312)
82 KOG0313 Microtubule binding pr 99.8 1.7E-19 3.6E-24 171.4 20.1 243 25-293 115-379 (423)
83 cd00200 WD40 WD40 domain, foun 99.8 6.8E-19 1.5E-23 168.5 24.9 186 23-288 103-289 (289)
84 KOG0283 WD40 repeat-containing 99.8 9.9E-20 2.1E-24 188.6 18.7 202 19-293 375-579 (712)
85 KOG0274 Cdc4 and related F-box 99.8 2E-19 4.4E-24 187.7 20.4 197 8-295 288-487 (537)
86 PLN00181 protein SPA1-RELATED; 99.8 6.1E-19 1.3E-23 196.2 25.6 189 22-291 492-691 (793)
87 KOG0303 Actin-binding protein 99.8 1.7E-19 3.6E-24 172.1 17.2 195 24-290 93-294 (472)
88 KOG0285 Pleiotropic regulator 99.8 8.1E-20 1.8E-24 172.2 14.6 189 22-291 202-390 (460)
89 KOG0282 mRNA splicing factor [ 99.8 1.3E-20 2.9E-25 183.7 9.3 171 48-296 205-378 (503)
90 KOG0274 Cdc4 and related F-box 99.8 1.8E-19 4E-24 188.0 18.4 233 25-344 218-479 (537)
91 KOG0643 Translation initiation 99.8 8.3E-19 1.8E-23 159.8 20.2 227 24-289 21-316 (327)
92 PTZ00420 coronin; Provisional 99.8 1.2E-18 2.7E-23 182.5 24.4 160 25-230 87-259 (568)
93 KOG0276 Vesicle coat complex C 99.8 1E-19 2.2E-24 182.1 15.3 158 22-230 106-267 (794)
94 KOG0275 Conserved WD40 repeat- 99.8 1.6E-20 3.5E-25 174.7 8.9 213 22-288 272-507 (508)
95 KOG0313 Microtubule binding pr 99.8 5.6E-19 1.2E-23 167.8 18.7 244 12-289 148-417 (423)
96 KOG0973 Histone transcription 99.8 7.8E-19 1.7E-23 186.2 21.2 257 19-294 19-316 (942)
97 KOG0308 Conserved WD40 repeat- 99.8 7.9E-20 1.7E-24 183.8 12.1 203 22-291 34-244 (735)
98 KOG0293 WD40 repeat-containing 99.8 2E-19 4.4E-24 172.3 14.1 222 20-291 276-514 (519)
99 KOG0640 mRNA cleavage stimulat 99.8 1.8E-19 3.8E-24 167.1 13.0 199 21-290 120-335 (430)
100 KOG1445 Tumor-specific antigen 99.8 3.5E-19 7.6E-24 178.2 15.6 196 24-289 640-843 (1012)
101 KOG1446 Histone H3 (Lys4) meth 99.8 1.6E-17 3.4E-22 155.0 25.1 194 8-239 56-282 (311)
102 KOG1407 WD40 repeat protein [F 99.8 2.1E-18 4.5E-23 156.8 18.4 168 24-230 76-271 (313)
103 KOG0267 Microtubule severing p 99.8 4E-20 8.7E-25 187.8 7.8 187 24-290 39-226 (825)
104 KOG1332 Vesicle coat complex C 99.8 1.3E-18 2.9E-23 156.6 16.3 196 24-290 22-241 (299)
105 KOG1407 WD40 repeat protein [F 99.8 1.9E-18 4E-23 157.1 16.4 225 23-295 30-266 (313)
106 KOG0288 WD40 repeat protein Ti 99.8 1.1E-18 2.4E-23 167.4 15.4 206 22-288 228-459 (459)
107 KOG0305 Anaphase promoting com 99.8 2.6E-18 5.7E-23 173.7 18.2 220 22-291 226-462 (484)
108 KOG0289 mRNA splicing factor [ 99.8 7.2E-18 1.6E-22 162.7 20.2 191 25-293 231-422 (506)
109 KOG0646 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 161.8 21.5 220 11-290 81-307 (476)
110 KOG0301 Phospholipase A2-activ 99.8 3.1E-18 6.7E-23 173.6 16.5 190 9-290 59-249 (745)
111 KOG0278 Serine/threonine kinas 99.8 5E-18 1.1E-22 153.3 15.2 202 7-295 99-302 (334)
112 KOG0264 Nucleosome remodeling 99.8 5.5E-18 1.2E-22 164.6 16.4 203 24-290 189-404 (422)
113 KOG0316 Conserved WD40 repeat- 99.8 1E-17 2.2E-22 150.2 16.6 205 48-351 8-215 (307)
114 KOG0306 WD40-repeat-containing 99.8 4.7E-18 1E-22 173.5 16.2 203 23-291 422-665 (888)
115 KOG0267 Microtubule severing p 99.8 7.9E-19 1.7E-23 178.5 9.3 167 22-240 79-246 (825)
116 KOG0308 Conserved WD40 repeat- 99.8 6.4E-18 1.4E-22 170.2 15.3 171 24-236 84-259 (735)
117 KOG0643 Translation initiation 99.8 2.8E-17 6E-22 149.9 17.0 195 53-291 6-221 (327)
118 KOG0269 WD40 repeat-containing 99.8 6.8E-18 1.5E-22 173.0 14.4 157 24-232 145-309 (839)
119 KOG0647 mRNA export protein (c 99.8 5.5E-17 1.2E-21 150.3 18.9 228 24-291 39-282 (347)
120 KOG0300 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 154.3 15.2 203 22-291 157-387 (481)
121 KOG0296 Angio-associated migra 99.8 4.6E-17 1E-21 154.2 17.6 167 48-292 55-222 (399)
122 KOG0301 Phospholipase A2-activ 99.7 3.5E-17 7.6E-22 166.0 17.8 186 12-290 102-288 (745)
123 KOG0772 Uncharacterized conser 99.7 4.7E-17 1E-21 160.0 16.7 201 12-290 272-487 (641)
124 KOG0973 Histone transcription 99.7 1.3E-16 2.9E-21 169.4 19.4 253 21-315 77-386 (942)
125 KOG0288 WD40 repeat protein Ti 99.7 4.8E-18 1.1E-22 163.0 7.4 226 26-295 188-422 (459)
126 KOG4283 Transcription-coupled 99.7 2E-16 4.3E-21 146.1 17.1 233 23-290 54-334 (397)
127 KOG0306 WD40-repeat-containing 99.7 4.3E-16 9.4E-21 159.3 20.5 210 22-308 382-592 (888)
128 KOG0641 WD40 repeat protein [G 99.7 1.6E-15 3.4E-20 135.3 21.1 199 21-291 97-304 (350)
129 KOG0310 Conserved WD40 repeat- 99.7 9.6E-16 2.1E-20 150.2 21.6 183 24-287 122-306 (487)
130 KOG2096 WD40 repeat protein [G 99.7 2.4E-16 5.3E-21 146.9 16.5 174 51-289 80-307 (420)
131 KOG0278 Serine/threonine kinas 99.7 4.3E-17 9.3E-22 147.3 11.1 215 22-293 26-257 (334)
132 KOG1273 WD40 repeat protein [G 99.7 8.1E-16 1.8E-20 143.3 19.4 208 23-232 33-292 (405)
133 KOG0772 Uncharacterized conser 99.7 1.2E-15 2.7E-20 150.1 21.6 261 20-346 174-454 (641)
134 KOG0264 Nucleosome remodeling 99.7 1.8E-16 4E-21 154.1 15.6 197 24-290 136-347 (422)
135 KOG0277 Peroxisomal targeting 99.7 6.1E-17 1.3E-21 146.8 11.0 169 24-244 116-290 (311)
136 KOG1273 WD40 repeat protein [G 99.7 4.6E-16 1E-20 144.9 15.1 248 49-349 17-292 (405)
137 KOG0639 Transducin-like enhanc 99.7 7E-17 1.5E-21 158.2 10.0 222 22-287 474-701 (705)
138 KOG0269 WD40 repeat-containing 99.7 1.1E-16 2.4E-21 164.1 10.9 209 24-307 99-314 (839)
139 KOG0268 Sof1-like rRNA process 99.7 5.4E-16 1.2E-20 146.9 13.4 236 26-293 80-348 (433)
140 KOG0302 Ribosome Assembly prot 99.7 1E-15 2.2E-20 145.7 14.7 167 24-219 269-437 (440)
141 KOG0299 U3 snoRNP-associated p 99.7 1.1E-15 2.4E-20 148.8 15.3 201 20-290 209-410 (479)
142 KOG0270 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 146.6 16.1 204 7-290 172-404 (463)
143 KOG1408 WD40 repeat protein [F 99.7 1.9E-15 4.2E-20 153.5 16.3 198 21-289 512-712 (1080)
144 KOG0302 Ribosome Assembly prot 99.7 2.8E-15 6.2E-20 142.7 16.2 206 13-290 153-378 (440)
145 KOG1274 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 152.3 21.7 196 26-291 67-263 (933)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.9E-14 1.1E-18 137.8 25.2 185 26-294 2-191 (300)
147 KOG0882 Cyclophilin-related pe 99.6 4.9E-16 1.1E-20 150.8 10.3 322 26-381 157-533 (558)
148 KOG2445 Nuclear pore complex c 99.6 2E-14 4.3E-19 133.8 20.2 251 20-289 20-317 (361)
149 KOG0305 Anaphase promoting com 99.6 4.3E-15 9.3E-20 150.5 17.2 193 21-295 185-381 (484)
150 KOG0321 WD40 repeat-containing 99.6 8.1E-15 1.7E-19 147.8 18.7 226 19-295 106-352 (720)
151 KOG1009 Chromatin assembly com 99.6 4.5E-15 9.7E-20 142.6 14.4 158 27-225 28-200 (434)
152 KOG1539 WD repeat protein [Gen 99.6 6.9E-15 1.5E-19 152.2 16.6 186 25-292 460-650 (910)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.5E-13 3.3E-18 134.3 25.6 209 23-293 40-282 (300)
154 KOG0642 Cell-cycle nuclear pro 99.6 1.3E-14 2.7E-19 144.7 17.3 236 24-292 305-563 (577)
155 KOG0641 WD40 repeat protein [G 99.6 5.2E-14 1.1E-18 125.7 19.4 161 13-220 141-303 (350)
156 KOG1274 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 149.2 20.4 154 24-221 107-263 (933)
157 KOG2096 WD40 repeat protein [G 99.6 1.9E-14 4E-19 134.5 16.6 203 22-290 196-402 (420)
158 KOG1034 Transcriptional repres 99.6 1E-14 2.2E-19 136.7 13.7 236 12-290 93-383 (385)
159 KOG4328 WD40 protein [Function 99.6 5.1E-14 1.1E-18 137.2 18.4 225 16-295 191-455 (498)
160 KOG1036 Mitotic spindle checkp 99.6 7.9E-14 1.7E-18 130.0 18.2 164 3-226 4-169 (323)
161 KOG0294 WD40 repeat-containing 99.6 1.4E-13 3.1E-18 128.5 19.7 157 27-222 99-283 (362)
162 KOG0299 U3 snoRNP-associated p 99.6 2.9E-14 6.2E-19 139.1 15.7 190 22-291 151-357 (479)
163 KOG0647 mRNA export protein (c 99.6 1.2E-13 2.6E-18 128.4 18.9 233 56-384 26-272 (347)
164 KOG0270 WD40 repeat-containing 99.6 9.9E-14 2.2E-18 134.8 18.8 195 24-295 255-454 (463)
165 KOG0303 Actin-binding protein 99.6 1.1E-14 2.4E-19 139.4 11.9 146 53-244 77-225 (472)
166 KOG0300 WD40 repeat-containing 99.6 6.1E-15 1.3E-19 137.4 9.4 191 48-292 139-346 (481)
167 KOG4283 Transcription-coupled 99.6 5.7E-14 1.2E-18 130.0 15.5 202 25-289 158-364 (397)
168 KOG1036 Mitotic spindle checkp 99.6 3.4E-14 7.3E-19 132.4 14.1 186 25-232 65-274 (323)
169 KOG1408 WD40 repeat protein [F 99.6 2.7E-14 5.9E-19 145.3 14.3 229 27-295 394-676 (1080)
170 KOG2055 WD40 repeat protein [G 99.6 3.9E-13 8.5E-18 131.2 21.7 228 13-288 215-510 (514)
171 KOG0307 Vesicle coat complex C 99.6 1.2E-14 2.6E-19 155.4 12.0 211 12-296 68-290 (1049)
172 KOG0268 Sof1-like rRNA process 99.6 9.2E-15 2E-19 138.6 9.2 151 24-225 199-350 (433)
173 KOG1539 WD repeat protein [Gen 99.5 3.9E-14 8.4E-19 146.7 13.3 144 22-219 502-647 (910)
174 KOG2919 Guanine nucleotide-bin 99.5 4.6E-13 9.9E-18 125.5 18.6 185 10-232 106-340 (406)
175 KOG0321 WD40 repeat-containing 99.5 1.3E-13 2.9E-18 139.1 14.8 226 23-291 62-302 (720)
176 KOG1332 Vesicle coat complex C 99.5 1.4E-13 3E-18 124.5 12.3 193 14-220 62-286 (299)
177 KOG2048 WD40 repeat protein [G 99.5 3.4E-12 7.3E-17 130.0 23.5 211 8-295 22-238 (691)
178 KOG4378 Nuclear protein COP1 [ 99.5 2.3E-13 5.1E-18 133.6 14.6 174 24-236 90-297 (673)
179 KOG0646 WD40 repeat protein [G 99.5 4.7E-13 1E-17 130.9 14.4 181 23-243 133-330 (476)
180 KOG2048 WD40 repeat protein [G 99.5 2.1E-12 4.5E-17 131.5 18.9 173 12-233 73-246 (691)
181 PF08662 eIF2A: Eukaryotic tra 99.5 7E-12 1.5E-16 115.3 20.6 138 36-230 38-188 (194)
182 KOG0639 Transducin-like enhanc 99.4 1.2E-12 2.7E-17 128.8 13.0 163 18-219 514-703 (705)
183 KOG4328 WD40 protein [Function 99.4 3.6E-12 7.8E-17 124.5 16.1 203 24-290 291-495 (498)
184 KOG2110 Uncharacterized conser 99.4 5.9E-12 1.3E-16 120.2 17.2 146 25-222 98-250 (391)
185 KOG1063 RNA polymerase II elon 99.4 6.5E-12 1.4E-16 128.1 17.8 113 21-145 533-650 (764)
186 KOG2106 Uncharacterized conser 99.4 3E-11 6.5E-16 119.3 21.3 192 28-291 260-478 (626)
187 KOG0771 Prolactin regulatory e 99.4 4.5E-12 9.8E-17 122.9 14.8 195 23-291 154-355 (398)
188 KOG1445 Tumor-specific antigen 99.4 9.3E-12 2E-16 125.6 17.3 194 50-289 72-292 (1012)
189 COG2319 FOG: WD40 repeat [Gene 99.4 8.4E-11 1.8E-15 118.1 24.3 186 27-293 125-317 (466)
190 KOG1538 Uncharacterized conser 99.4 8.3E-12 1.8E-16 126.6 16.1 225 34-289 32-292 (1081)
191 KOG0650 WD40 repeat nucleolar 99.4 2.1E-11 4.5E-16 122.6 18.0 233 21-291 408-681 (733)
192 KOG2919 Guanine nucleotide-bin 99.4 1.1E-11 2.3E-16 116.5 15.0 233 21-291 57-328 (406)
193 KOG0644 Uncharacterized conser 99.4 1.3E-12 2.8E-17 135.4 9.3 253 22-300 199-478 (1113)
194 KOG0649 WD40 repeat protein [G 99.4 4E-11 8.6E-16 108.6 17.6 213 20-294 17-239 (325)
195 KOG4378 Nuclear protein COP1 [ 99.4 1.2E-11 2.7E-16 121.7 15.5 246 12-355 38-289 (673)
196 KOG0290 Conserved WD40 repeat- 99.4 1.7E-11 3.7E-16 113.6 15.5 214 5-291 93-319 (364)
197 KOG1524 WD40 repeat-containing 99.4 3.5E-12 7.7E-17 126.5 11.5 176 25-213 76-278 (737)
198 KOG2110 Uncharacterized conser 99.4 2.6E-11 5.6E-16 115.9 16.0 106 25-146 142-251 (391)
199 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.3E-15 116.3 20.1 244 15-295 175-457 (636)
200 KOG2394 WD40 protein DMR-N9 [G 99.3 1E-11 2.2E-16 123.5 12.5 137 12-166 223-385 (636)
201 KOG1188 WD40 repeat protein [G 99.3 8.7E-11 1.9E-15 111.2 18.0 147 27-222 42-198 (376)
202 KOG1063 RNA polymerase II elon 99.3 1E-11 2.2E-16 126.8 12.6 126 51-222 519-650 (764)
203 KOG0307 Vesicle coat complex C 99.3 4.1E-12 9E-17 136.3 10.1 191 24-293 128-330 (1049)
204 COG2319 FOG: WD40 repeat [Gene 99.3 2E-10 4.3E-15 115.4 21.9 192 22-293 74-274 (466)
205 KOG1009 Chromatin assembly com 99.3 2.3E-11 4.9E-16 117.4 13.3 157 57-243 13-173 (434)
206 KOG1007 WD repeat protein TSSC 99.3 7.3E-11 1.6E-15 109.3 15.6 197 22-290 73-289 (370)
207 KOG1034 Transcriptional repres 99.3 9.4E-11 2E-15 110.4 16.2 163 14-224 44-215 (385)
208 KOG2445 Nuclear pore complex c 99.3 1.3E-10 2.8E-15 108.6 16.9 202 55-291 11-257 (361)
209 PRK01742 tolB translocation pr 99.3 1.4E-10 3E-15 120.3 18.5 183 20-289 210-400 (429)
210 KOG2106 Uncharacterized conser 99.3 4.1E-10 8.9E-15 111.4 20.0 210 22-288 377-624 (626)
211 KOG1310 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 114.8 16.8 166 21-219 58-230 (758)
212 KOG0322 G-protein beta subunit 99.3 3.9E-11 8.4E-16 109.9 11.0 150 22-219 162-322 (323)
213 PF08662 eIF2A: Eukaryotic tra 99.2 3.3E-10 7.2E-15 104.2 16.1 105 25-151 73-186 (194)
214 KOG0649 WD40 repeat protein [G 99.2 1.1E-09 2.3E-14 99.4 18.7 161 26-229 73-244 (325)
215 KOG0290 Conserved WD40 repeat- 99.2 5.4E-10 1.2E-14 103.8 16.8 122 24-145 162-320 (364)
216 KOG1007 WD repeat protein TSSC 99.2 1.7E-10 3.6E-15 107.0 12.9 104 25-144 184-290 (370)
217 KOG2055 WD40 repeat protein [G 99.2 8.6E-10 1.9E-14 108.2 18.0 219 57-363 213-437 (514)
218 KOG0642 Cell-cycle nuclear pro 99.2 1.4E-10 3.1E-15 116.2 12.8 147 51-230 288-435 (577)
219 KOG2111 Uncharacterized conser 99.2 4.7E-10 1E-14 105.4 15.0 123 9-146 134-259 (346)
220 KOG1188 WD40 repeat protein [G 99.2 7.9E-10 1.7E-14 104.8 15.7 109 24-145 83-198 (376)
221 KOG1272 WD40-repeat-containing 99.2 5.9E-11 1.3E-15 116.3 7.1 165 4-228 166-331 (545)
222 PRK01742 tolB translocation pr 99.1 1.1E-09 2.4E-14 113.5 17.0 161 21-237 255-420 (429)
223 KOG1523 Actin-related protein 99.1 1.4E-09 3E-14 102.4 15.3 154 24-220 21-176 (361)
224 KOG1272 WD40-repeat-containing 99.1 1.2E-10 2.7E-15 114.1 8.4 114 22-151 218-331 (545)
225 KOG2111 Uncharacterized conser 99.1 1.8E-08 3.8E-13 95.0 22.2 142 34-222 112-258 (346)
226 KOG0974 WD-repeat protein WDR6 99.1 9.5E-10 2.1E-14 117.4 15.0 148 21-221 141-289 (967)
227 KOG1334 WD40 repeat protein [G 99.1 1.2E-09 2.6E-14 107.9 14.6 288 6-340 137-468 (559)
228 KOG1963 WD40 repeat protein [G 99.1 7.6E-09 1.6E-13 108.9 20.5 168 21-228 213-383 (792)
229 KOG1538 Uncharacterized conser 99.1 1.9E-09 4.1E-14 109.8 15.5 214 59-291 14-253 (1081)
230 KOG2139 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 96.3 20.9 195 24-289 109-310 (445)
231 PRK05137 tolB translocation pr 99.1 2.9E-08 6.2E-13 103.3 23.8 137 35-226 182-328 (435)
232 KOG1587 Cytoplasmic dynein int 99.1 1.2E-08 2.7E-13 106.6 20.4 203 24-291 254-473 (555)
233 KOG1240 Protein kinase contain 99.1 1.5E-08 3.2E-13 109.9 21.3 228 22-295 1058-1339(1431)
234 PRK11028 6-phosphogluconolacto 99.1 3E-08 6.5E-13 99.2 22.0 166 15-222 83-260 (330)
235 PF02239 Cytochrom_D1: Cytochr 99.1 6.3E-09 1.4E-13 105.2 17.1 189 24-229 5-211 (369)
236 KOG0771 Prolactin regulatory e 99.1 1.1E-09 2.4E-14 106.5 11.0 76 61-151 148-223 (398)
237 PRK04922 tolB translocation pr 99.0 6E-08 1.3E-12 100.8 24.7 137 35-226 184-330 (433)
238 PRK03629 tolB translocation pr 99.0 5.1E-08 1.1E-12 101.1 23.5 150 20-224 205-367 (429)
239 KOG0322 G-protein beta subunit 99.0 4.2E-09 9E-14 96.8 13.3 227 28-288 28-321 (323)
240 PRK04922 tolB translocation pr 99.0 5.7E-08 1.2E-12 100.9 23.7 151 20-225 210-373 (433)
241 PRK11028 6-phosphogluconolacto 99.0 7E-08 1.5E-12 96.5 23.4 148 27-222 4-158 (330)
242 KOG1517 Guanine nucleotide bin 99.0 5.8E-09 1.3E-13 111.3 15.8 203 24-293 1177-1384(1387)
243 KOG4227 WD40 repeat protein [G 99.0 1.9E-08 4.1E-13 96.9 17.7 119 12-146 57-182 (609)
244 KOG4547 WD40 repeat-containing 99.0 1.4E-08 3E-13 102.8 17.2 169 24-243 4-195 (541)
245 KOG4227 WD40 repeat protein [G 99.0 3.1E-09 6.8E-14 102.2 11.5 190 52-310 51-242 (609)
246 PRK02889 tolB translocation pr 99.0 7.6E-08 1.7E-12 99.8 22.8 152 20-226 202-366 (427)
247 PRK03629 tolB translocation pr 99.0 9.7E-08 2.1E-12 99.0 23.5 135 35-224 179-323 (429)
248 KOG3914 WD repeat protein WDR4 99.0 3.7E-09 8E-14 102.4 10.7 128 6-153 105-233 (390)
249 PRK05137 tolB translocation pr 99.0 1.5E-07 3.2E-12 97.9 23.4 148 21-223 209-369 (435)
250 KOG2139 WD40 repeat protein [G 99.0 3E-08 6.5E-13 94.9 16.3 151 12-219 144-308 (445)
251 KOG4190 Uncharacterized conser 99.0 6.8E-09 1.5E-13 103.8 12.4 249 25-368 747-1007(1034)
252 KOG2321 WD40 repeat protein [G 98.9 2.8E-08 6E-13 100.1 16.5 155 36-230 156-312 (703)
253 KOG4547 WD40 repeat-containing 98.9 3.6E-08 7.9E-13 99.8 17.5 120 22-159 67-188 (541)
254 PRK02889 tolB translocation pr 98.9 1.8E-07 4E-12 96.9 22.1 130 35-219 176-313 (427)
255 KOG1517 Guanine nucleotide bin 98.9 6.2E-08 1.3E-12 103.7 18.3 200 27-292 1078-1289(1387)
256 KOG0650 WD40 repeat nucleolar 98.9 4.5E-08 9.7E-13 99.1 16.4 236 50-351 393-642 (733)
257 TIGR02800 propeller_TolB tol-p 98.9 1.8E-07 3.9E-12 96.6 21.1 137 34-225 169-315 (417)
258 KOG1523 Actin-related protein 98.9 9.4E-08 2E-12 90.2 16.4 171 22-222 64-238 (361)
259 KOG4497 Uncharacterized conser 98.9 1.5E-07 3.2E-12 89.1 17.1 233 24-295 60-396 (447)
260 TIGR02800 propeller_TolB tol-p 98.9 6E-07 1.3E-11 92.7 23.7 150 20-224 196-358 (417)
261 KOG1310 WD40 repeat protein [G 98.9 1.2E-08 2.7E-13 102.0 10.2 181 50-291 43-232 (758)
262 KOG3881 Uncharacterized conser 98.8 1.9E-07 4.2E-12 90.3 17.7 201 24-296 115-326 (412)
263 KOG0644 Uncharacterized conser 98.8 2.2E-09 4.7E-14 111.9 3.9 102 52-167 185-286 (1113)
264 KOG0974 WD-repeat protein WDR6 98.8 5.3E-08 1.1E-12 104.3 14.3 181 27-289 101-287 (967)
265 KOG3881 Uncharacterized conser 98.8 8.1E-08 1.7E-12 92.9 13.8 154 23-227 159-327 (412)
266 KOG1354 Serine/threonine prote 98.8 4.2E-08 9E-13 93.3 11.6 225 12-288 88-357 (433)
267 PRK00178 tolB translocation pr 98.8 1.6E-06 3.4E-11 90.1 22.8 136 36-226 180-325 (430)
268 PRK00178 tolB translocation pr 98.7 2.1E-06 4.5E-11 89.2 23.4 150 20-224 205-367 (430)
269 KOG1963 WD40 repeat protein [G 98.7 3.9E-07 8.4E-12 96.2 17.3 151 34-232 180-334 (792)
270 KOG1240 Protein kinase contain 98.7 4E-07 8.6E-12 99.1 17.6 181 40-230 1034-1235(1431)
271 KOG1524 WD40 repeat-containing 98.7 3.3E-07 7.2E-12 91.8 15.2 142 69-290 75-216 (737)
272 PF00400 WD40: WD domain, G-be 98.7 4.4E-08 9.6E-13 64.9 5.7 38 48-85 2-39 (39)
273 PRK04792 tolB translocation pr 98.7 4.6E-06 9.9E-11 87.0 23.4 136 36-226 199-344 (448)
274 PRK01029 tolB translocation pr 98.7 2.3E-06 5E-11 88.6 20.1 158 21-228 238-411 (428)
275 PRK04792 tolB translocation pr 98.6 8.4E-06 1.8E-10 85.0 22.9 149 21-224 225-386 (448)
276 PF00400 WD40: WD domain, G-be 98.6 1.1E-07 2.3E-12 63.0 5.6 37 105-141 3-39 (39)
277 KOG2321 WD40 repeat protein [G 98.6 7.6E-06 1.6E-10 83.0 21.0 187 11-227 51-265 (703)
278 PRK01029 tolB translocation pr 98.6 7.8E-06 1.7E-10 84.7 21.5 158 20-227 191-366 (428)
279 KOG2315 Predicted translation 98.6 3.4E-06 7.3E-11 85.3 17.7 134 36-228 252-397 (566)
280 KOG1064 RAVE (regulator of V-A 98.6 1.8E-07 4E-12 104.9 8.9 162 21-230 2216-2408(2439)
281 KOG0280 Uncharacterized conser 98.5 2.5E-06 5.4E-11 79.9 14.2 113 22-147 130-246 (339)
282 PF02239 Cytochrom_D1: Cytochr 98.5 6E-06 1.3E-10 83.6 17.8 107 73-230 10-118 (369)
283 KOG1587 Cytoplasmic dynein int 98.5 1.7E-06 3.7E-11 90.7 13.9 150 24-220 359-516 (555)
284 COG4946 Uncharacterized protei 98.5 8.3E-05 1.8E-09 74.0 23.5 119 14-151 362-485 (668)
285 KOG1334 WD40 repeat protein [G 98.4 9.7E-07 2.1E-11 87.7 9.8 230 24-293 198-469 (559)
286 PLN02919 haloacid dehalogenase 98.4 9.5E-05 2.1E-09 84.6 27.3 228 25-294 636-892 (1057)
287 PLN02919 haloacid dehalogenase 98.4 2.4E-05 5.1E-10 89.5 21.8 174 24-225 694-893 (1057)
288 KOG3914 WD repeat protein WDR4 98.4 6.7E-06 1.5E-10 80.1 13.5 157 22-231 71-234 (390)
289 KOG4497 Uncharacterized conser 98.4 8E-07 1.7E-11 84.3 6.7 109 22-148 17-127 (447)
290 COG4946 Uncharacterized protei 98.3 4.5E-05 9.7E-10 75.9 17.9 141 35-230 341-487 (668)
291 KOG2695 WD40 repeat protein [G 98.2 4.1E-06 8.8E-11 80.1 8.8 177 3-232 207-388 (425)
292 COG5170 CDC55 Serine/threonine 98.2 6.1E-06 1.3E-10 77.8 9.3 146 55-232 170-322 (460)
293 KOG1912 WD40 repeat protein [G 98.2 6.1E-05 1.3E-09 79.0 17.2 228 20-291 22-305 (1062)
294 COG2706 3-carboxymuconate cycl 98.2 0.00061 1.3E-08 66.1 22.6 111 22-144 97-222 (346)
295 KOG1409 Uncharacterized conser 98.2 4.8E-06 1E-10 79.6 8.0 68 19-87 203-270 (404)
296 KOG1409 Uncharacterized conser 98.1 3E-05 6.5E-10 74.3 12.1 88 46-146 186-273 (404)
297 PF11768 DUF3312: Protein of u 98.1 4.6E-05 1E-09 78.2 14.1 127 3-147 200-333 (545)
298 KOG2695 WD40 repeat protein [G 98.1 1.3E-05 2.7E-10 76.8 9.3 116 25-152 264-385 (425)
299 PF10282 Lactonase: Lactonase, 98.1 0.0015 3.2E-08 65.8 24.9 171 12-224 87-281 (345)
300 PRK04043 tolB translocation pr 98.1 0.00069 1.5E-08 69.9 22.6 112 20-149 194-315 (419)
301 KOG0280 Uncharacterized conser 98.1 4.7E-05 1E-09 71.6 12.3 131 15-146 168-336 (339)
302 KOG2315 Predicted translation 98.1 5.6E-05 1.2E-09 76.7 13.8 108 21-150 280-396 (566)
303 KOG1354 Serine/threonine prote 98.1 0.00011 2.3E-09 70.6 14.7 176 23-223 174-362 (433)
304 KOG0309 Conserved WD40 repeat- 98.1 2.3E-05 5E-10 81.6 10.6 121 24-145 81-234 (1081)
305 PF11768 DUF3312: Protein of u 98.0 0.00027 5.8E-09 72.8 17.2 95 112-244 258-354 (545)
306 KOG4532 WD40-like repeat conta 98.0 0.00055 1.2E-08 63.8 17.1 151 31-228 134-290 (344)
307 KOG2041 WD40 repeat protein [G 98.0 0.00027 5.8E-09 73.7 16.6 153 12-220 18-186 (1189)
308 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0025 5.4E-08 63.7 23.2 85 2-93 40-142 (352)
309 KOG4190 Uncharacterized conser 97.9 3.3E-05 7E-10 78.0 8.8 89 50-148 728-817 (1034)
310 KOG1064 RAVE (regulator of V-A 97.9 4.9E-05 1.1E-09 86.2 10.2 198 53-306 2204-2417(2439)
311 PF07433 DUF1513: Protein of u 97.9 0.0013 2.7E-08 63.8 18.4 191 25-231 17-258 (305)
312 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0091 2E-07 59.7 24.8 107 35-152 27-145 (352)
313 PRK04043 tolB translocation pr 97.8 0.0049 1.1E-07 63.6 22.9 136 36-227 170-316 (419)
314 PF10282 Lactonase: Lactonase, 97.8 0.0057 1.2E-07 61.6 22.4 153 35-223 13-177 (345)
315 KOG4714 Nucleoporin [Nuclear s 97.8 8.7E-05 1.9E-09 68.7 8.2 73 59-144 181-255 (319)
316 PF15492 Nbas_N: Neuroblastoma 97.8 0.019 4.1E-07 54.4 23.4 209 23-291 7-260 (282)
317 KOG2066 Vacuolar assembly/sort 97.8 0.00097 2.1E-08 70.7 16.4 149 22-220 80-233 (846)
318 KOG2066 Vacuolar assembly/sort 97.7 0.00071 1.5E-08 71.7 13.9 146 25-232 49-199 (846)
319 PF08450 SGL: SMP-30/Gluconola 97.7 0.0038 8.2E-08 59.5 18.1 157 23-231 50-223 (246)
320 KOG2314 Translation initiation 97.6 0.00051 1.1E-08 69.8 11.7 115 60-224 213-338 (698)
321 PF13360 PQQ_2: PQQ-like domai 97.6 0.0058 1.3E-07 57.5 18.7 113 25-153 37-150 (238)
322 KOG4532 WD40-like repeat conta 97.6 0.0022 4.8E-08 59.9 14.9 123 20-151 165-290 (344)
323 smart00320 WD40 WD40 repeats. 97.6 0.00018 4E-09 45.4 5.7 38 48-85 3-40 (40)
324 PF08450 SGL: SMP-30/Gluconola 97.6 0.044 9.6E-07 52.1 24.2 185 24-290 11-213 (246)
325 PF04762 IKI3: IKI3 family; I 97.6 0.0045 9.7E-08 70.0 19.7 191 24-222 88-335 (928)
326 PF15492 Nbas_N: Neuroblastoma 97.6 0.0092 2E-07 56.5 18.1 194 15-232 45-271 (282)
327 KOG2314 Translation initiation 97.6 0.0016 3.4E-08 66.4 13.7 156 20-228 217-389 (698)
328 KOG4714 Nucleoporin [Nuclear s 97.5 0.00024 5.1E-09 65.9 7.1 64 24-88 191-255 (319)
329 COG2706 3-carboxymuconate cycl 97.5 0.0046 9.9E-08 60.1 16.0 156 34-225 15-180 (346)
330 smart00320 WD40 WD40 repeats. 97.4 0.00035 7.5E-09 44.0 5.2 37 105-141 4-40 (40)
331 PF04762 IKI3: IKI3 family; I 97.4 0.055 1.2E-06 61.3 24.8 239 24-289 34-332 (928)
332 TIGR03300 assembly_YfgL outer 97.4 0.026 5.6E-07 57.5 20.3 148 28-232 193-350 (377)
333 COG5354 Uncharacterized protei 97.3 0.016 3.5E-07 58.7 17.7 133 33-221 200-349 (561)
334 PF13360 PQQ_2: PQQ-like domai 97.3 0.0024 5.1E-08 60.2 11.1 147 33-232 1-152 (238)
335 KOG0309 Conserved WD40 repeat- 97.2 0.00033 7.2E-09 73.3 4.5 119 24-144 170-340 (1081)
336 KOG3621 WD40 repeat-containing 97.2 0.015 3.2E-07 61.3 15.9 111 24-144 44-155 (726)
337 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00032 7E-09 74.7 4.0 184 24-232 1112-1303(1516)
338 TIGR03300 assembly_YfgL outer 97.1 0.04 8.7E-07 56.0 18.9 104 28-152 68-172 (377)
339 KOG1275 PAB-dependent poly(A) 97.1 0.0044 9.4E-08 66.8 11.8 170 27-218 149-340 (1118)
340 PF07433 DUF1513: Protein of u 97.1 0.058 1.3E-06 52.4 18.1 129 22-151 59-255 (305)
341 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.064 1.4E-06 43.9 15.0 102 13-138 4-109 (111)
342 COG5354 Uncharacterized protei 96.9 0.013 2.8E-07 59.4 12.7 138 35-224 11-163 (561)
343 KOG2041 WD40 repeat protein [G 96.9 0.0086 1.9E-07 62.9 11.7 88 58-146 15-104 (1189)
344 PF06977 SdiA-regulated: SdiA- 96.9 0.41 8.8E-06 45.6 21.7 207 24-288 33-248 (248)
345 KOG1920 IkappaB kinase complex 96.8 0.053 1.2E-06 60.5 17.3 67 58-139 69-135 (1265)
346 KOG2114 Vacuolar assembly/sort 96.8 0.05 1.1E-06 58.6 16.5 169 24-232 34-214 (933)
347 KOG1275 PAB-dependent poly(A) 96.8 0.0095 2.1E-07 64.3 11.1 114 24-141 186-340 (1118)
348 KOG4640 Anaphase-promoting com 96.8 0.0053 1.2E-07 63.7 8.6 79 58-151 21-100 (665)
349 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0018 3.9E-08 69.3 5.3 121 108-228 1096-1222(1516)
350 COG5170 CDC55 Serine/threonine 96.7 0.023 5E-07 54.2 11.9 121 23-144 36-202 (460)
351 PF08553 VID27: VID27 cytoplas 96.6 0.068 1.5E-06 58.7 16.4 147 24-220 493-647 (794)
352 COG0823 TolB Periplasmic compo 96.6 0.099 2.1E-06 54.0 16.6 95 35-147 218-318 (425)
353 KOG1645 RING-finger-containing 96.6 0.0065 1.4E-07 59.8 7.3 93 37-146 175-269 (463)
354 PRK02888 nitrous-oxide reducta 96.4 0.1 2.3E-06 55.4 15.5 83 114-221 321-405 (635)
355 KOG1912 WD40 repeat protein [G 96.2 0.029 6.4E-07 59.6 10.2 105 23-143 77-186 (1062)
356 KOG1920 IkappaB kinase complex 96.2 0.11 2.4E-06 58.1 14.6 193 21-221 78-323 (1265)
357 KOG3617 WD40 and TPR repeat-co 96.2 0.066 1.4E-06 57.6 12.4 71 7-85 58-129 (1416)
358 PRK11138 outer membrane biogen 96.1 0.49 1.1E-05 48.5 18.4 142 31-229 211-362 (394)
359 PF04841 Vps16_N: Vps16, N-ter 95.9 1.9 4E-05 44.5 21.6 180 36-230 62-324 (410)
360 TIGR03268 methan_mark_3 putati 95.9 0.033 7.1E-07 56.8 8.3 101 340-461 202-302 (503)
361 KOG1645 RING-finger-containing 95.8 0.03 6.6E-07 55.3 7.5 76 109-221 189-267 (463)
362 PRK00969 hypothetical protein; 95.8 0.033 7.2E-07 57.0 7.9 101 340-461 205-305 (508)
363 KOG1008 Uncharacterized conser 95.7 0.0039 8.5E-08 64.7 1.2 158 12-219 60-224 (783)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 2.3 5E-05 45.4 21.9 228 25-295 70-338 (527)
365 PF04053 Coatomer_WDAD: Coatom 95.7 0.2 4.4E-06 51.9 13.5 119 52-231 27-145 (443)
366 KOG2114 Vacuolar assembly/sort 95.7 0.64 1.4E-05 50.5 17.1 158 26-232 78-256 (933)
367 KOG3617 WD40 and TPR repeat-co 95.6 0.017 3.7E-07 61.8 5.3 93 33-143 39-131 (1416)
368 KOG4499 Ca2+-binding protein R 95.5 1.8 4E-05 40.2 17.4 203 6-246 53-264 (310)
369 COG3386 Gluconolactonase [Carb 95.5 1.6 3.4E-05 43.1 18.5 104 107-245 156-264 (307)
370 COG0823 TolB Periplasmic compo 95.4 0.22 4.7E-06 51.5 12.5 112 22-151 246-366 (425)
371 PF12894 Apc4_WD40: Anaphase-p 95.3 0.047 1E-06 37.5 4.9 34 114-148 12-45 (47)
372 PF04053 Coatomer_WDAD: Coatom 95.2 0.49 1.1E-05 49.2 14.4 141 8-220 32-173 (443)
373 KOG4640 Anaphase-promoting com 95.1 0.07 1.5E-06 55.7 7.8 66 22-90 29-95 (665)
374 cd00216 PQQ_DH Dehydrogenases 95.1 5.3 0.00011 42.2 22.4 27 127-153 303-329 (488)
375 cd00216 PQQ_DH Dehydrogenases 95.0 3.1 6.6E-05 44.0 20.2 170 30-229 66-273 (488)
376 COG3391 Uncharacterized conser 95.0 2.6 5.7E-05 43.0 19.1 153 24-227 85-246 (381)
377 PF12234 Rav1p_C: RAVE protein 95.0 0.33 7.1E-06 52.1 12.6 113 21-143 37-156 (631)
378 PF14783 BBS2_Mid: Ciliary BBS 94.9 1.6 3.5E-05 35.8 13.6 65 60-142 2-70 (111)
379 KOG2395 Protein involved in va 94.9 0.73 1.6E-05 47.6 14.1 147 25-219 346-499 (644)
380 PF06433 Me-amine-dh_H: Methyl 94.8 2.1 4.5E-05 42.4 16.7 51 35-90 17-78 (342)
381 KOG2079 Vacuolar assembly/sort 94.7 0.075 1.6E-06 58.7 6.9 77 68-157 98-174 (1206)
382 PRK02888 nitrous-oxide reducta 94.6 0.5 1.1E-05 50.4 12.7 103 34-144 295-405 (635)
383 TIGR03074 PQQ_membr_DH membran 94.6 9.7 0.00021 42.5 23.4 115 31-152 200-353 (764)
384 KOG2079 Vacuolar assembly/sort 94.4 0.14 3E-06 56.8 8.2 99 27-142 101-202 (1206)
385 COG3386 Gluconolactonase [Carb 94.2 1.1 2.3E-05 44.2 13.4 98 47-152 152-251 (307)
386 KOG2444 WD40 repeat protein [G 94.2 0.13 2.9E-06 47.4 6.4 98 28-148 73-171 (238)
387 PRK11138 outer membrane biogen 94.1 1.2 2.7E-05 45.5 14.3 105 30-152 74-187 (394)
388 PF05935 Arylsulfotrans: Aryls 93.9 2.1 4.6E-05 45.1 15.7 181 23-232 113-313 (477)
389 KOG1008 Uncharacterized conser 93.8 0.021 4.5E-07 59.6 0.5 110 12-143 158-275 (783)
390 COG3204 Uncharacterized protei 93.7 5.2 0.00011 38.6 16.3 90 54-143 82-210 (316)
391 PF12903 DUF3830: Protein of u 93.6 0.34 7.3E-06 41.8 7.5 39 339-377 8-52 (147)
392 PF12894 Apc4_WD40: Anaphase-p 93.6 0.23 5E-06 34.1 5.3 30 57-86 11-40 (47)
393 PF00780 CNH: CNH domain; Int 93.5 7.3 0.00016 37.4 18.3 162 24-231 7-176 (275)
394 PF14761 HPS3_N: Hermansky-Pud 93.5 4.7 0.0001 37.2 15.2 130 6-144 15-164 (215)
395 PRK13616 lipoprotein LpqB; Pro 93.3 1.2 2.7E-05 48.0 13.1 112 55-211 347-467 (591)
396 PF00930 DPPIV_N: Dipeptidyl p 93.2 0.59 1.3E-05 47.2 10.0 84 113-218 42-129 (353)
397 TIGR02604 Piru_Ver_Nterm putat 92.8 6.8 0.00015 39.7 17.0 101 22-132 22-142 (367)
398 PRK00969 hypothetical protein; 92.7 0.98 2.1E-05 46.6 10.5 117 328-463 49-168 (508)
399 COG4070 Predicted peptidyl-pro 92.7 0.26 5.6E-06 48.7 6.0 100 340-462 204-305 (512)
400 PF06977 SdiA-regulated: SdiA- 92.6 3 6.6E-05 39.7 13.2 124 24-151 75-208 (248)
401 PRK13616 lipoprotein LpqB; Pro 92.5 3.8 8.2E-05 44.4 15.3 72 60-139 399-472 (591)
402 KOG4460 Nuclear pore complex, 92.5 6.6 0.00014 40.8 15.8 91 59-150 105-205 (741)
403 COG3391 Uncharacterized conser 92.5 14 0.0003 37.7 21.7 157 26-231 129-294 (381)
404 COG3490 Uncharacterized protei 92.3 11 0.00023 36.4 16.0 60 22-84 122-186 (366)
405 PF08553 VID27: VID27 cytoplas 92.1 1.4 3.1E-05 48.7 11.6 95 33-143 550-647 (794)
406 PF08596 Lgl_C: Lethal giant l 92.0 12 0.00025 38.5 17.5 91 59-150 3-122 (395)
407 KOG2444 WD40 repeat protein [G 91.9 0.41 8.9E-06 44.2 6.0 71 69-151 70-140 (238)
408 PF02897 Peptidase_S9_N: Proly 91.4 2.1 4.5E-05 44.1 11.7 73 59-146 125-213 (414)
409 PF05096 Glu_cyclase_2: Glutam 91.3 10 0.00022 36.3 14.9 107 32-153 107-213 (264)
410 TIGR03268 methan_mark_3 putati 91.3 2.6 5.6E-05 43.5 11.5 120 326-463 43-165 (503)
411 PF10647 Gmad1: Lipoprotein Lp 91.1 5.4 0.00012 38.1 13.3 72 59-141 67-142 (253)
412 KOG4649 PQQ (pyrrolo-quinoline 90.7 16 0.00034 34.8 18.0 61 28-90 66-126 (354)
413 PF10313 DUF2415: Uncharacteri 90.7 1.1 2.4E-05 29.9 5.6 31 115-145 2-35 (43)
414 PF02333 Phytase: Phytase; In 90.1 23 0.0005 35.9 20.9 207 14-293 58-293 (381)
415 PF00930 DPPIV_N: Dipeptidyl p 90.0 0.94 2E-05 45.7 7.4 102 34-141 22-129 (353)
416 KOG3621 WD40 repeat-containing 89.7 1.6 3.4E-05 46.6 8.6 123 56-221 32-155 (726)
417 PF00780 CNH: CNH domain; Int 89.1 21 0.00046 34.1 18.7 115 114-238 139-271 (275)
418 PF14583 Pectate_lyase22: Olig 89.1 6.7 0.00015 39.6 12.4 133 37-212 216-371 (386)
419 KOG1916 Nuclear protein, conta 89.1 0.45 9.7E-06 51.9 4.3 94 35-143 153-265 (1283)
420 PF14655 RAB3GAP2_N: Rab3 GTPa 88.9 3.7 8E-05 42.2 10.6 45 109-153 303-347 (415)
421 PF14269 Arylsulfotran_2: Aryl 88.9 21 0.00045 35.1 15.6 123 133-290 94-220 (299)
422 KOG4499 Ca2+-binding protein R 88.6 3.1 6.8E-05 38.8 8.7 87 61-152 161-250 (310)
423 cd01922 cyclophilin_SpCYP2_lik 88.4 0.16 3.6E-06 44.2 0.5 101 275-378 2-122 (146)
424 PF03178 CPSF_A: CPSF A subuni 87.9 11 0.00025 37.2 13.4 99 24-143 98-202 (321)
425 PF10313 DUF2415: Uncharacteri 87.8 1.5 3.3E-05 29.3 4.6 31 58-88 1-34 (43)
426 cd01923 cyclophilin_RING cyclo 87.6 0.26 5.6E-06 43.7 1.2 102 274-378 3-124 (159)
427 PF14870 PSII_BNR: Photosynthe 87.5 31 0.00066 34.0 16.3 72 55-141 142-213 (302)
428 PF07569 Hira: TUP1-like enhan 87.3 3.7 8.1E-05 38.3 8.9 73 65-146 18-98 (219)
429 COG0652 PpiB Peptidyl-prolyl c 87.2 0.22 4.7E-06 43.8 0.4 100 274-377 3-123 (158)
430 KOG1897 Damage-specific DNA bi 86.9 60 0.0013 36.7 21.5 138 202-381 839-977 (1096)
431 cd01921 cyclophilin_RRM cyclop 86.8 0.24 5.2E-06 44.2 0.6 102 274-378 1-130 (166)
432 cd01927 cyclophilin_WD40 cyclo 86.8 0.28 6E-06 42.9 0.9 101 275-378 2-122 (148)
433 PF02897 Peptidase_S9_N: Proly 86.7 25 0.00054 36.0 15.6 108 22-145 132-262 (414)
434 COG4070 Predicted peptidyl-pro 86.4 2.3 5E-05 42.3 7.0 23 340-362 377-399 (512)
435 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.3 51 0.0011 35.3 23.1 30 120-149 307-339 (527)
436 KOG0884 Similar to cyclophilin 85.8 0.48 1E-05 38.8 1.7 64 273-338 3-71 (161)
437 KOG0881 Cyclophilin type pepti 85.6 0.082 1.8E-06 43.5 -2.8 106 270-377 9-133 (164)
438 PF03022 MRJP: Major royal jel 85.0 5.3 0.00012 39.0 9.0 171 92-296 33-221 (287)
439 PF11715 Nup160: Nucleoporin N 84.5 2 4.4E-05 46.1 6.4 41 114-154 215-259 (547)
440 PRK10791 peptidyl-prolyl cis-t 84.4 0.36 7.8E-06 43.0 0.5 103 274-378 3-130 (164)
441 PF10168 Nup88: Nuclear pore c 84.1 8.7 0.00019 42.5 11.0 88 58-146 85-182 (717)
442 PF07676 PD40: WD40-like Beta 83.8 4.9 0.00011 25.8 5.7 28 113-140 8-38 (39)
443 KOG1916 Nuclear protein, conta 83.4 0.67 1.5E-05 50.7 2.1 124 11-148 183-328 (1283)
444 KOG0415 Predicted peptidyl pro 82.7 0.89 1.9E-05 44.4 2.4 63 272-336 2-69 (479)
445 PF15390 DUF4613: Domain of un 82.7 16 0.00034 38.8 11.4 117 13-143 61-186 (671)
446 COG5167 VID27 Protein involved 82.6 20 0.00043 37.4 11.8 140 26-220 481-632 (776)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 82.6 13 0.00028 38.3 10.8 96 52-151 302-406 (415)
448 PRK10903 peptidyl-prolyl cis-t 82.3 0.52 1.1E-05 43.0 0.7 104 273-378 31-156 (190)
449 PF03178 CPSF_A: CPSF A subuni 82.1 50 0.0011 32.5 14.9 114 11-143 26-157 (321)
450 PF07569 Hira: TUP1-like enhan 82.1 8.8 0.00019 35.8 8.8 81 121-223 18-98 (219)
451 KOG0883 Cyclophilin type, U bo 82.0 0.54 1.2E-05 46.4 0.7 104 272-378 279-402 (518)
452 COG3823 Glutamine cyclotransfe 81.8 12 0.00025 34.5 8.9 138 33-210 109-248 (262)
453 KOG4649 PQQ (pyrrolo-quinoline 81.6 51 0.0011 31.5 17.4 109 25-151 23-131 (354)
454 cd01928 Cyclophilin_PPIL3_like 81.4 0.7 1.5E-05 40.6 1.1 103 273-378 3-125 (153)
455 PF06433 Me-amine-dh_H: Methyl 81.3 5 0.00011 39.8 7.1 55 98-153 274-330 (342)
456 PF08596 Lgl_C: Lethal giant l 80.6 72 0.0016 32.7 15.6 198 53-293 82-293 (395)
457 PF10647 Gmad1: Lipoprotein Lp 79.8 49 0.0011 31.6 13.3 106 20-134 72-186 (253)
458 cd01920 cyclophilin_EcCYP_like 79.7 0.56 1.2E-05 41.3 -0.0 102 275-378 2-125 (155)
459 PF12234 Rav1p_C: RAVE protein 79.6 59 0.0013 35.4 14.9 72 58-142 30-103 (631)
460 PF05694 SBP56: 56kDa selenium 79.2 13 0.00027 38.2 9.2 104 34-146 221-345 (461)
461 KOG2395 Protein involved in va 78.5 19 0.00042 37.6 10.3 95 33-143 402-500 (644)
462 KOG3630 Nuclear pore complex, 77.8 9.4 0.0002 43.3 8.4 112 25-151 114-235 (1405)
463 cd01925 cyclophilin_CeCYP16-li 76.8 0.84 1.8E-05 40.9 0.2 101 272-375 7-127 (171)
464 PF14870 PSII_BNR: Photosynthe 76.7 71 0.0015 31.4 13.5 100 22-134 153-253 (302)
465 KOG4441 Proteins containing BT 74.6 1.1E+02 0.0025 33.0 15.7 107 24-146 332-455 (571)
466 TIGR03606 non_repeat_PQQ dehyd 74.5 69 0.0015 33.5 13.4 63 56-125 28-90 (454)
467 KOG2280 Vacuolar assembly/sort 74.5 56 0.0012 35.8 12.7 48 36-87 65-112 (829)
468 PF04126 Cyclophil_like: Cyclo 74.3 20 0.00043 30.0 7.9 100 331-462 2-113 (120)
469 PF08728 CRT10: CRT10; InterP 74.1 74 0.0016 35.1 13.8 119 10-142 99-245 (717)
470 PRK10115 protease 2; Provision 74.1 43 0.00094 37.1 12.6 71 59-145 128-209 (686)
471 TIGR02276 beta_rpt_yvtn 40-res 74.0 10 0.00022 24.4 5.0 30 123-152 1-31 (42)
472 TIGR02276 beta_rpt_yvtn 40-res 73.6 13 0.00029 23.9 5.5 32 201-232 1-34 (42)
473 PF05096 Glu_cyclase_2: Glutam 73.5 89 0.0019 30.0 14.6 128 50-229 36-166 (264)
474 smart00564 PQQ beta-propeller 73.0 8.9 0.00019 23.4 4.2 25 127-151 8-32 (33)
475 KOG4460 Nuclear pore complex, 70.6 57 0.0012 34.3 11.3 27 115-141 105-131 (741)
476 KOG2377 Uncharacterized conser 70.3 1.4E+02 0.003 31.0 15.8 32 112-143 65-96 (657)
477 PF15390 DUF4613: Domain of un 69.7 1.6E+02 0.0036 31.5 15.3 73 114-217 57-138 (671)
478 PF04841 Vps16_N: Vps16, N-ter 69.1 1.4E+02 0.0031 30.7 14.4 29 57-85 216-244 (410)
479 PF05935 Arylsulfotrans: Aryls 68.3 73 0.0016 33.6 12.3 120 23-154 157-312 (477)
480 PHA02713 hypothetical protein; 68.2 41 0.00088 36.3 10.6 22 202-223 512-536 (557)
481 PF07676 PD40: WD40-like Beta 68.0 27 0.00057 22.2 5.8 31 54-84 5-38 (39)
482 PF01011 PQQ: PQQ enzyme repea 66.0 11 0.00025 24.1 3.7 26 128-153 3-28 (38)
483 KOG2280 Vacuolar assembly/sort 64.3 2.3E+02 0.0049 31.4 14.6 39 114-152 217-255 (829)
484 PF11715 Nup160: Nucleoporin N 64.0 19 0.00041 38.6 7.1 34 58-91 215-252 (547)
485 PHA02713 hypothetical protein; 63.7 28 0.0006 37.5 8.2 65 68-146 463-536 (557)
486 KOG1897 Damage-specific DNA bi 63.5 2.7E+02 0.0059 31.8 18.9 105 36-149 751-862 (1096)
487 PF07995 GSDH: Glucose / Sorbo 63.4 46 0.001 33.2 9.3 51 11-68 4-59 (331)
488 PF07250 Glyoxal_oxid_N: Glyox 63.2 1.4E+02 0.003 28.4 11.9 37 194-231 172-208 (243)
489 PF12657 TFIIIC_delta: Transcr 62.3 71 0.0015 28.4 9.4 30 115-144 87-122 (173)
490 PF01731 Arylesterase: Arylest 62.2 35 0.00076 26.7 6.4 30 114-143 54-84 (86)
491 PF14583 Pectate_lyase22: Olig 59.9 42 0.00091 34.1 8.0 76 119-230 41-120 (386)
492 TIGR03074 PQQ_membr_DH membran 59.1 2.6E+02 0.0056 31.5 14.8 30 124-153 455-487 (764)
493 COG3490 Uncharacterized protei 59.0 1.3E+02 0.0029 29.2 10.7 62 64-140 120-186 (366)
494 COG3204 Uncharacterized protei 58.7 1.6E+02 0.0034 28.9 11.2 43 110-152 82-124 (316)
495 TIGR03606 non_repeat_PQQ dehyd 58.6 2.1E+02 0.0046 29.9 13.2 55 10-69 31-90 (454)
496 PF13449 Phytase-like: Esteras 58.2 1.8E+02 0.0039 28.8 12.4 118 62-207 89-230 (326)
497 TIGR02604 Piru_Ver_Nterm putat 56.3 2.3E+02 0.0049 28.6 14.1 70 59-142 15-98 (367)
498 PF12657 TFIIIC_delta: Transcr 56.3 45 0.00097 29.7 7.0 29 116-146 7-35 (173)
499 PF10168 Nup88: Nuclear pore c 56.0 1.4E+02 0.0031 33.2 12.1 90 115-221 86-180 (717)
500 COG4247 Phy 3-phytase (myo-ino 55.8 1.9E+02 0.0042 27.6 16.2 37 14-54 57-93 (364)
No 1
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-98 Score=716.20 Aligned_cols=469 Identities=57% Similarity=0.915 Sum_probs=435.5
Q ss_pred CceeeecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 011473 1 MMLMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI 80 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~ 80 (485)
|++|+++.|.|..++|++..+++...++|+.-+++.|.|+|-..+..+....-+-|.+||.++.++|.++.++|.+..|+
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 78999999999999999999999999999999999999999874333444444579999999999999999999999999
Q ss_pred EEEEcCC-CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 81 IEYWSPH-TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 81 i~~Wd~~-t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
|+.|..+ ++++|+..+-|.+|.++.|+.+.+.+....++.|||+|..+++-+.|++||++++++|++++.++|......
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ 247 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence 9999877 799999989999999999999999999999999999999999999999999999999999999999887766
Q ss_pred hhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceee
Q 011473 160 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLR 239 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~ 239 (485)
..+.+ .|.+..+++|||+|+|+++.++.......++||++|+||+|++.-|||++++.|++++|++|+.| ++||++
T Consensus 248 ~q~ks---~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e-~ir~~~ 323 (558)
T KOG0882|consen 248 YQPKS---PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDE-AIRFTR 323 (558)
T ss_pred hcccc---ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccch-hhhhhh
Confidence 66655 56888999999999999999999888899999999999999999999999999999999999999 899999
Q ss_pred eeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCccccccccc
Q 011473 240 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSD 319 (485)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~ 319 (485)
+||||+...++.. +.++.+++|+.+. ..+||+++|||.+++|||+| ++|+.++ +.||+|||+|.+++.+.+.+
T Consensus 324 ~sl~q~~~k~~~~-~~~~~a~~np~~~-~~~dpt~~c~a~kk~rfylf--~ep~~~~---~~~dvfne~p~~~~~~~~~~ 396 (558)
T KOG0882|consen 324 LSLYQGAQKSNLA-ALEVAASNNPLLE-FQKDPTIVCTAFKKNRFYLF--REPEFTE---SDRDVFNEKPLKEELMEARQ 396 (558)
T ss_pred HHHHhhhhhccch-hhhhhhccCcccc-cCCCCeEEEeeeecceEEEE--ecCCCCc---chhhhhccCcChhHhhhhhh
Confidence 9999987555443 3388888886555 66999999999999999999 7777665 56899999999999999885
Q ss_pred CCCCccCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCc
Q 011473 320 IGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGRE 399 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~ 399 (485)
.. .....+..+++||++|+|.|.||+++||+||+||..+|++|||||..||||++|||||+|||.|+|+||+++||..
T Consensus 397 ~~--g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~d 474 (558)
T KOG0882|consen 397 EE--GNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKD 474 (558)
T ss_pred cc--CceecccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCccccccc
Confidence 43 5667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011473 400 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 400 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
|+||+++.|+|++|++|||||.|||+||||||||+.+.||||++|||||||+.||+|+++|+++.+++++||+++++|.+
T Consensus 475 fedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 475 FEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred chhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 011473 480 VTV 482 (485)
Q Consensus 480 ~~v 482 (485)
++|
T Consensus 555 isv 557 (558)
T KOG0882|consen 555 ISV 557 (558)
T ss_pred Eec
Confidence 987
No 2
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=322.66 Aligned_cols=157 Identities=54% Similarity=0.924 Sum_probs=152.9
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccccc
Q 011473 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 406 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 406 (485)
..+..|+++|++|.|++|||-+.||+||+||.+|++.|||+|+.||||+++||||||||+++|.||.++||..|+||.+.
T Consensus 7 ~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~ 86 (164)
T KOG0881|consen 7 WQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHS 86 (164)
T ss_pred CCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011473 407 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 407 ~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
.|+|..+|.+|||+.|||+|||||||+|.+.+||||+|++||||..||+|+.++..+.+|..+||+.+++|.++.++
T Consensus 87 dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 87 DLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred hhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765
No 3
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=3.5e-45 Score=321.60 Aligned_cols=153 Identities=55% Similarity=1.007 Sum_probs=147.2
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCC
Q 011473 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 409 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 409 (485)
+.|+|+|+.|+|+||||++.||++|+||++||+++||+|+.||||+++|++||||+.+++.++.++|+.++++|....++
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~ 80 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLK 80 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCC
Confidence 46899999999999999999999999999999999999999999999999999999988888999999999999877889
Q ss_pred CCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011473 410 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 410 ~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|+.+|+|.+++|
T Consensus 81 ~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 81 HDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred cCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865
No 4
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-46 Score=352.36 Aligned_cols=151 Identities=56% Similarity=0.871 Sum_probs=143.4
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcC-----------ccCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCcc
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREF 400 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~ 400 (485)
+-.-+.|||++|||.|.||+||+||+.||.+. .|.|+.||||+++|||||||+ .++|+||++|||..|
T Consensus 17 I~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~F 96 (372)
T KOG0546|consen 17 IGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKF 96 (372)
T ss_pred eCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccccccc
Confidence 33456799999999999999999999999753 499999999999999999999 689999999999999
Q ss_pred ccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 011473 401 EDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 480 (485)
Q Consensus 401 ~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 480 (485)
+||+ +.++|+++|+|||||.|||+||||||||+.++|||||+|+|||+||+|++||+.|+.+.+|..++|+.+|+|.+|
T Consensus 97 dDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dC 175 (372)
T KOG0546|consen 97 DDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDC 175 (372)
T ss_pred cccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccc
Confidence 9998 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC
Q 011473 481 TVPK 484 (485)
Q Consensus 481 ~v~~ 484 (485)
+.+.
T Consensus 176 Gel~ 179 (372)
T KOG0546|consen 176 GELV 179 (372)
T ss_pred cccc
Confidence 9864
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=1.8e-44 Score=319.45 Aligned_cols=153 Identities=50% Similarity=0.890 Sum_probs=148.3
Q ss_pred EEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCC
Q 011473 332 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHD 411 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 411 (485)
|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|+|||||+.+++.++.++|+.++++|....++|+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcC
Confidence 78999999999999999999999999999999999999999999999999999998899999999999999987888999
Q ss_pred CceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011473 412 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 412 ~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
++|+|+|++.++++++|||||+++++|+||++|+|||||++||++|++|++++++++++|+++|+|.+|.|+.
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999899999999999999974
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=9.9e-45 Score=317.24 Aligned_cols=148 Identities=83% Similarity=1.381 Sum_probs=142.9
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCC
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 412 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 412 (485)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|+|||||+.+++.++.++|+..+++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred ceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 011473 413 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 480 (485)
Q Consensus 413 ~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 480 (485)
+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|+++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 7
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=346.05 Aligned_cols=158 Identities=51% Similarity=0.876 Sum_probs=154.5
Q ss_pred cCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccc
Q 011473 325 TTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEF 404 (485)
Q Consensus 325 ~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~ 404 (485)
.....+.|.++|+.|+|.|||+.|.+|++|+||++||++|||+|+.|||.|+|||||||||+|+|.||+++||.+|.||+
T Consensus 273 rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf 352 (518)
T KOG0883|consen 273 RVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEF 352 (518)
T ss_pred cccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCcccccc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011473 405 HKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 405 ~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
.+.|.|+.+|+||||++|||+|||||||++.++.+||++|+|||||+.|+++|.+|++++++++++|+++|+|.++.|
T Consensus 353 ~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 353 CSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIV 430 (518)
T ss_pred CCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
No 8
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-45 Score=314.98 Aligned_cols=146 Identities=59% Similarity=0.919 Sum_probs=139.4
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcC----ccCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccccCCC
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNE----YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKSLR 409 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~----~y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~~~ 409 (485)
.-..|+|+|.||+..+|+||+||++||..+ -|.|++||||+|||||||||. .++|+|+.++||..|+||+ ..|+
T Consensus 50 ~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DEN-f~Lk 128 (217)
T KOG0880|consen 50 GEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDEN-FKLK 128 (217)
T ss_pred CEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCcc-ceee
Confidence 456789999999999999999999999833 399999999999999999999 5679999999999999998 8899
Q ss_pred CCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 011473 410 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 481 (485)
Q Consensus 410 ~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 481 (485)
|++||.||||+.||++||||||||+...+||||+|+|||+|++||++|.+|+.+++|++++|+++++|.+|.
T Consensus 129 H~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g 200 (217)
T KOG0880|consen 129 HDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCG 200 (217)
T ss_pred cCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=311.93 Aligned_cols=148 Identities=57% Similarity=0.915 Sum_probs=135.1
Q ss_pred EEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCC-CCCCcccCCCccccccccCCCC
Q 011473 332 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGD-GTGGQSIWGREFEDEFHKSLRH 410 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~-~~~~~~~~~~~~~~e~~~~~~~ 410 (485)
++++|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++|||||||+.+. +.+++ +.+|++|+ ....|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~-~~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDEN-FALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccc-ccccc
Confidence 689999999999999999999999999999999999999999999999999999877 77777 47899997 44455
Q ss_pred CC--ceEEEEcccC-CCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccCeEEEEEEEc
Q 011473 411 DR--PFTVSMANAG-PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNVTVP 483 (485)
Q Consensus 411 ~~--~g~v~~~~~~-~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~----~~p~~~i~I~~~~v~ 483 (485)
.+ +|+||||+.+ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+... +.|..+++|.++.++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 55 8999999999 9999999999999999999999999999999999999999888754 467788999998775
No 10
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-45 Score=288.70 Aligned_cols=154 Identities=52% Similarity=0.907 Sum_probs=150.5
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCC
Q 011473 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 409 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 409 (485)
+.|+++|..|+|.||||.+.+|++|+||+.+|...||+++.|||-+|+||+|+|++..+|.||.++||.+|++|+...|+
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEc
Q 011473 410 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVP 483 (485)
Q Consensus 410 ~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~~v~ 483 (485)
|+.+|.|+||++||++|+|||||+.+..|+||-+|++||+|++|+|.|++|+++++++. +||+.++.|.+++|.
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999976 899999999999986
No 11
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.4e-43 Score=309.03 Aligned_cols=146 Identities=58% Similarity=0.985 Sum_probs=140.1
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCC
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 412 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 412 (485)
+++|+.|+|+||||++.||++|+||++||+.+||+++.||||+|+|+|||||+.+++.++.++++..|++|....++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 47899999999999999999999999999999999999999999999999999888888889999999999878899999
Q ss_pred ceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011473 413 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 413 ~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
+|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999998 799999999963
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=5.6e-43 Score=312.47 Aligned_cols=152 Identities=45% Similarity=0.793 Sum_probs=142.2
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCC-------Cccccccc
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWG-------REFEDEFH 405 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~e~~ 405 (485)
+|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+++|+|||||+.+++.++.++|+ ..+++|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47899999999999999999999999999999999999999999999999999888888777664 35777877
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVA-TPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~-~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
..++|+++|+|+||+.++++++|||||++.+ +|+||++|+|||||++|||+|++|++++++++++|+++|+|.+|+|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 7889999999999999999999999999986 799999999999999999999999999999999999999999999975
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.8e-42 Score=306.87 Aligned_cols=159 Identities=48% Similarity=0.801 Sum_probs=150.7
Q ss_pred CCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccc
Q 011473 326 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 326 ~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 405 (485)
+++...|+++|+.|+|+||||++.||++|+||++||+.+||+|+.||||+++|+||||++.+++.++.++||.++++|..
T Consensus 2 ~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~ 81 (171)
T cd01925 2 PPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFH 81 (171)
T ss_pred CCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI-KGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
..++|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ ++|+++++|++++++++++|+++|+|.+|+|+.
T Consensus 82 ~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 82 SRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred cCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 7889999999999999999999999999999999999999999999 468889999999999999999999999999864
No 14
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=280.78 Aligned_cols=146 Identities=50% Similarity=0.810 Sum_probs=141.1
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcCc--------cCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccc
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~ 405 (485)
.++.|+|.||||.|.+|+|++||++.|.+.| |+++.||||+++|||||||. .++|+|-.++|+..|+||+
T Consensus 21 g~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DEN- 99 (177)
T KOG0879|consen 21 GRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDEN- 99 (177)
T ss_pred CEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCcc-
Confidence 5678999999999999999999999999887 99999999999999999998 7889999999999999998
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 481 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 481 (485)
..|+|++||++|||++|+++||.|||||..++.+||++|+|||||++|+.++++|+.+++..++||+-+|.|..|+
T Consensus 100 FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCG 175 (177)
T KOG0879|consen 100 FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCG 175 (177)
T ss_pred eeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999885
No 15
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=3.8e-40 Score=306.21 Aligned_cols=155 Identities=26% Similarity=0.343 Sum_probs=139.6
Q ss_pred CCCCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhcC-----------ccCCceEEEEEeC-cEEEecCCCCCC
Q 011473 327 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNE-----------YYNNLIFHRVIKG-FMIQTGDPLGDG 389 (485)
Q Consensus 327 ~~~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~-~~iq~G~~~~~~ 389 (485)
.....|.|+++ .|+|+||||.+.||+||+||+.||++. +|+|+.||||+++ |+||+||+.+.
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~- 128 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF- 128 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC-
Confidence 34446888877 567999999999999999999999753 3999999999986 89999998643
Q ss_pred CCCcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC
Q 011473 390 TGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKND 469 (485)
Q Consensus 390 ~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~ 469 (485)
+.+++|..|++|. ..++|+++|+|+|++.+|+++||||||++.++|+||++|+|||||++||+||++|+++++++++
T Consensus 129 --g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g 205 (249)
T PTZ00221 129 --NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG 205 (249)
T ss_pred --CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 4466788999997 5789999999999999999999999999999999999999999999999999999999998889
Q ss_pred CcccCeEEEEEEEcCC
Q 011473 470 KPYQDVKILNVTVPKS 485 (485)
Q Consensus 470 ~p~~~i~I~~~~v~~~ 485 (485)
+|.++|+|.+|+++++
T Consensus 206 rP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 206 RPLLPVTVSFCGALTG 221 (249)
T ss_pred CCCCCeEEEECeEecC
Confidence 9999999999999874
No 16
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1e-39 Score=289.46 Aligned_cols=150 Identities=41% Similarity=0.649 Sum_probs=131.2
Q ss_pred EEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCC
Q 011473 332 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHD 411 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 411 (485)
|+|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+|+|+||||++... .+ ...++.++++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence 689999999999999999999999999999999999999999999999999986421 11 122456788887566666
Q ss_pred CceEEEEcccC-CCCCCceEEEEccCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEEE
Q 011473 412 RPFTVSMANAG-PNTNGSQFFITTVATPWLD-------N-KHTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKIL 478 (485)
Q Consensus 412 ~~g~v~~~~~~-~~~~~sqf~i~~~~~~~ld-------~-~~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~i~I~ 478 (485)
++|+||||+.+ |++++|||||++.++++|| + +|+|||||++|||+|++|+++++++ +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 67999999875 9999999999999988876 3 7999999999999999999999976 36999999999
Q ss_pred EEEEcC
Q 011473 479 NVTVPK 484 (485)
Q Consensus 479 ~~~v~~ 484 (485)
+++|.+
T Consensus 159 ~~~i~~ 164 (164)
T PRK10791 159 SVTVSE 164 (164)
T ss_pred EEEEeC
Confidence 998863
No 17
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.6e-39 Score=294.70 Aligned_cols=155 Identities=34% Similarity=0.534 Sum_probs=136.1
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccccc
Q 011473 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 406 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 406 (485)
.....|+++|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|+||||++.+...+ ..++.++++|...
T Consensus 26 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~~ 103 (190)
T PRK10903 26 KGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADN 103 (190)
T ss_pred CCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCcccc
Confidence 34557999999999999999999999999999999999999999999999999999998654321 2245678888655
Q ss_pred CCCCCCceEEEEcccC-CCCCCceEEEEccCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeE
Q 011473 407 SLRHDRPFTVSMANAG-PNTNGSQFFITTVATPWLDN-----KHTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVK 476 (485)
Q Consensus 407 ~~~~~~~g~v~~~~~~-~~~~~sqf~i~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~i~ 476 (485)
.+ |+.+|+|+|++.+ |++++|||||++++.++||+ +|+|||+|++|||||++|+++++++ +++|..+|+
T Consensus 104 ~l-~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 182 (190)
T PRK10903 104 GL-RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVV 182 (190)
T ss_pred cC-cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeE
Confidence 55 4567999999865 99999999999999999984 8999999999999999999999976 579999999
Q ss_pred EEEEEEcC
Q 011473 477 ILNVTVPK 484 (485)
Q Consensus 477 I~~~~v~~ 484 (485)
|.+|+|++
T Consensus 183 I~~~~v~~ 190 (190)
T PRK10903 183 ILSAKVLP 190 (190)
T ss_pred EEEEEEeC
Confidence 99999874
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=1.5e-39 Score=294.18 Aligned_cols=146 Identities=51% Similarity=0.813 Sum_probs=136.9
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhhhcCc--------cCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccccC
Q 011473 337 TMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 337 ~~G~i~i~L~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
+.|+|+||||.+.||++|+||++||++++ |+++.||||+++|+|||||+ .+++.++.++|+..|++|. ..
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~-~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDEN-FI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCcc-cc
Confidence 56999999999999999999999998655 99999999999999999997 5778888889999998886 56
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011473 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVI-KGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~-~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
++|.++|+|+|++.++++++|||||++.++|+||++|+|||||+ +||++|++|++++++++++|+++|+|.+|++.
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 78999999999999999999999999999999999999999999 79999999999999999999999999999863
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.3e-39 Score=288.87 Aligned_cols=145 Identities=55% Similarity=0.885 Sum_probs=135.8
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhc--C------ccCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccc
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRN--E------YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~--~------~y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~ 405 (485)
.++.|+|+||||.+.||++|+||++||++ + +|+++.||||+|+|+||+||+ .+++.++.++|+..+++|.
T Consensus 11 ~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~- 89 (164)
T cd01926 11 GEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDEN- 89 (164)
T ss_pred CeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCC-
Confidence 35799999999999999999999999984 4 899999999999999999997 4678888889999999886
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 481 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 481 (485)
..++|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|+++|+|.+|+
T Consensus 90 ~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 90 FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 6789999999999999999999999999999999999999999999999999999999998 89999999999984
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=6e-39 Score=290.03 Aligned_cols=147 Identities=52% Similarity=0.847 Sum_probs=136.4
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhh---------cCccCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCcccccc
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCR---------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFEDEF 404 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~---------~~~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e~ 404 (485)
.++.|+|+||||.+.||++|+||++||+ .++|+|+.||||+|+|+|||||+. +++.++.++||..+++|.
T Consensus 26 ~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~ 105 (183)
T PTZ00060 26 NAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDEN 105 (183)
T ss_pred CEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCcc
Confidence 3567999999999999999999999996 468999999999999999999975 567888888999998885
Q ss_pred ccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011473 405 HKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 405 ~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+++++ ++++|.++|+|.+|+++
T Consensus 106 -~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~~cg~~ 182 (183)
T PTZ00060 106 -FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182 (183)
T ss_pred -ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEEEeEEc
Confidence 678999999999999999999999999999999999999999999999999999999988 46899999999999986
No 21
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=304.89 Aligned_cols=163 Identities=47% Similarity=0.797 Sum_probs=156.7
Q ss_pred CCccCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccc
Q 011473 322 NSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFE 401 (485)
Q Consensus 322 ~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~ 401 (485)
..+.+.+.+.|++.|+.|+|.||||+.+||++|+||++||..|||+|+.|||++|||.+|||||+++|+||++|||.+|.
T Consensus 5 ~~~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fa 84 (439)
T KOG0885|consen 5 YNLEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFA 84 (439)
T ss_pred cccCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccch
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEc-CHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 011473 402 DEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK-GMDVVQAIEKVKTDKNDKPYQDVKILNV 480 (485)
Q Consensus 402 ~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~-G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 480 (485)
+|++++|++.++|+|+||+.+.+.||||||+||+++|+|+++|++||+|+. -+..+.+|..+.++.+.||..+-+|.+|
T Consensus 85 dE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~ 164 (439)
T KOG0885|consen 85 DEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSV 164 (439)
T ss_pred hhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeee
Confidence 999999999999999999999999999999999999999999999999994 6888999999999999999999999999
Q ss_pred EEcC
Q 011473 481 TVPK 484 (485)
Q Consensus 481 ~v~~ 484 (485)
+|+.
T Consensus 165 EV~~ 168 (439)
T KOG0885|consen 165 EVLI 168 (439)
T ss_pred Eeec
Confidence 9974
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2e-38 Score=279.70 Aligned_cols=144 Identities=41% Similarity=0.579 Sum_probs=126.6
Q ss_pred EEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCCc
Q 011473 334 LHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRP 413 (485)
Q Consensus 334 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 413 (485)
|+|+.|+|+|+||++.||++|+||++||+.+||+|+.||||+|+|+||||++...+.+. .++.++++|....+ |+++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~--~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK--ETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc--ccCCcccCcccccc-cCCc
Confidence 78999999999999999999999999999999999999999999999999986554332 23567777764444 4677
Q ss_pred eEEEEcccC-CCCCCceEEEEccCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccCeEEEEE
Q 011473 414 FTVSMANAG-PNTNGSQFFITTVATPWLDN-----KHTVFGRVIKGMDVVQAIEKVKTDKN----DKPYQDVKILNV 480 (485)
Q Consensus 414 g~v~~~~~~-~~~~~sqf~i~~~~~~~ld~-----~~~vfG~V~~G~~vl~~i~~~~~~~~----~~p~~~i~I~~~ 480 (485)
|+||||+.+ |++++|||||+++++|+||+ +|+|||+|++|||||++|++++++++ ++|+.+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999999865 89999999999999999995 79999999999999999999999764 699999998763
No 23
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=3.7e-37 Score=270.87 Aligned_cols=146 Identities=58% Similarity=0.869 Sum_probs=134.6
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCC
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDR 412 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 412 (485)
+++|+.|+|+|+||++.||++|+||++||+.++|+|+.|||++|+++||+|++..++.++ ..++..+++|......|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 478999999999999999999999999999999999999999999999999987654433 3457788999877776888
Q ss_pred ceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011473 413 PFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 413 ~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
+|+|+|++.++++++|||||++.++|+||++|+|||||++||++|++|++.+++++++|.++|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
No 24
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=288.79 Aligned_cols=155 Identities=45% Similarity=0.791 Sum_probs=148.5
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCC-------Ccccc
Q 011473 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWG-------REFED 402 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~ 402 (485)
+.|+++|++|+|+|+||.+++|.+|.||++||+-.||+.|.||-|..+|.+|+|||+|+|.||.++|+ ..|+.
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999985 34789
Q ss_pred ccccCCCCCCceEEEEcccCCCCCCceEEEEccCC-CCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEE
Q 011473 403 EFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVAT-PWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVT 481 (485)
Q Consensus 403 e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~-~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~ 481 (485)
|+.+.++|.+.|+|||++.|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+.+-+|++++|+++|+|.+..
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 99999999999999999999999999999999887 59999999999999999999999999999999999999999999
Q ss_pred EcC
Q 011473 482 VPK 484 (485)
Q Consensus 482 v~~ 484 (485)
|+.
T Consensus 161 iLd 163 (479)
T KOG0415|consen 161 ILD 163 (479)
T ss_pred Eec
Confidence 875
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-37 Score=267.78 Aligned_cols=151 Identities=49% Similarity=0.779 Sum_probs=141.0
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhc--Cc-cCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccc
Q 011473 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRN--EY-YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~--~~-y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~ 405 (485)
+.-+-.-..|+|+++|..|..|+|++||..||.+ || |.|+.||||||.||+||||. .++|+||.++||..|.+|+
T Consensus 142 ~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdden- 220 (298)
T KOG0111|consen 142 DIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDEN- 220 (298)
T ss_pred heeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccc-
Confidence 4445567789999999999999999999999975 44 99999999999999999999 5789999999999999998
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
..|+|..+|+||||++|+|+|||||||++....|||++|+|||.|++||+||+++++.++ ++|+|...|+|..|+=
T Consensus 221 f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~~cge 296 (298)
T KOG0111|consen 221 FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIVECGE 296 (298)
T ss_pred eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEEeccc
Confidence 889999999999999999999999999999999999999999999999999999999986 5699999999999863
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.1e-35 Score=266.56 Aligned_cols=140 Identities=33% Similarity=0.540 Sum_probs=119.3
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCC---------------------Cc
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG---------------------GQ 393 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~---------------------~~ 393 (485)
.|+.|+|+|+||++.||+||+||++||+.+||+++.||||+++||||||++.+++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 489999999999999999999999999999999999999999999999999765432 23
Q ss_pred ccCCCccc----cccccCCCCCCceEEEEcccC--CCCCCceEEEEcc-------CCCCCCCCCcEEEEEEcCHHHHHHH
Q 011473 394 SIWGREFE----DEFHKSLRHDRPFTVSMANAG--PNTNGSQFFITTV-------ATPWLDNKHTVFGRVIKGMDVVQAI 460 (485)
Q Consensus 394 ~~~~~~~~----~e~~~~~~~~~~g~v~~~~~~--~~~~~sqf~i~~~-------~~~~ld~~~~vfG~V~~G~~vl~~i 460 (485)
++|+..++ ++....+.|+.+|+|||++.+ |++++|||||+++ +.|+||++|+|||||++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 45554443 233356678888999999987 7999999999998 7899999999999999999999999
Q ss_pred hcCCCCCCCCcccCeEEEEEEEcCC
Q 011473 461 EKVKTDKNDKPYQDVKILNVTVPKS 485 (485)
Q Consensus 461 ~~~~~~~~~~p~~~i~I~~~~v~~~ 485 (485)
+.. + .|.+++|++|
T Consensus 163 ~~g----------d-~i~~~~~~~~ 176 (176)
T cd01924 163 KVG----------D-KIESARVVEG 176 (176)
T ss_pred cCC----------C-EEEEEEEecC
Confidence 754 2 4788888765
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.9e-35 Score=260.80 Aligned_cols=148 Identities=51% Similarity=0.820 Sum_probs=131.9
Q ss_pred EEEEeC-CeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCc--ccCCCcccccccc-C
Q 011473 332 VILHTT-MGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQ--SIWGREFEDEFHK-S 407 (485)
Q Consensus 332 ~~~~t~-~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~--~~~~~~~~~e~~~-~ 407 (485)
+.|+|+ .|+|+||||++.||++|+||++||+.++|+|+.|||++|+++||+|++.+.+..+. ...+.++++|... .
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 689997 99999999999999999999999999999999999999999999999876544211 2234568888753 4
Q ss_pred CCCCCceEEEEcccC--CCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011473 408 LRHDRPFTVSMANAG--PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~--~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
+.| ++|+|+|++.+ +++++|||||+|.++|+||++|+|||+|++||++|++|+++++++ +|.++|+|.+|+|
T Consensus 82 ~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 555 78999999976 889999999999999999999999999999999999999999876 9999999999987
No 28
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=260.54 Aligned_cols=249 Identities=21% Similarity=0.244 Sum_probs=197.3
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc------
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------ 94 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------ 94 (485)
.+|++..++||+.|.++|+||+. +..++++.++|+..|.||+|+|||+.||||+.||.|++||+.+++....
T Consensus 123 fsp~g~~l~tGsGD~TvR~WD~~--TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDTTVRLWDLD--TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred ecCCCceEEecCCCceEEeeccC--CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence 46789999999999999999997 8899999999999999999999999999999999999999988775421
Q ss_pred ----------------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011473 95 ----------------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 95 ----------------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
...|+.+.+++++.+.+|+.+|+|+.|--+| ++++||.|++||+|+...|+
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh
Confidence 2348888899999999999999999997555 78999999999999999999
Q ss_pred EEEEeccchhHHHhhhcCCCcccccccc--------------------------cccchhhh---------------hHh
Q 011473 147 LRRVYDESLEVAQDLQRSDAPLYRLEAI--------------------------DFGRRMAV---------------EKE 185 (485)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~g~~~~~---------------~~~ 185 (485)
+.+++.+|...+..++-+.+-.++...+ ..|.|+.. .+.
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 9999998877666555442211111000 00111110 011
Q ss_pred hhc--cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccc
Q 011473 186 IEK--TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 262 (485)
Q Consensus 186 i~~--~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~ 262 (485)
+.+ .+...++.+.|||||+||+++|.|. ||+||-.+|+.+.+++||-. ++||- ++
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-------~VYqv----------aw----- 417 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-------AVYQV----------AW----- 417 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-------eeEEE----------Ee-----
Confidence 111 2344568999999999999999986 99999999999999999874 45552 11
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCC
Q 011473 263 NESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATK 300 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~ 300 (485)
..|+.|++|+|+|.++++|.-+..|...+.++
T Consensus 418 ------saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG 449 (480)
T KOG0271|consen 418 ------SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG 449 (480)
T ss_pred ------ccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence 17999999999999999999988777665443
No 29
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.9e-31 Score=251.72 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=183.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.-++|++.||+|++|++. +..++..|++|...|..++|||+|++|+|++.|.+.++||+++ +
T Consensus 230 ~~~~lat~s~Dgtvklw~~~--~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--------------k 293 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLS--QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--------------K 293 (459)
T ss_pred CccceeeeccCCceeeeccC--CCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc--------------c
Confidence 46689999999999999997 5688999999999999999999999999999999999999988 5
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc-----
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR----- 178 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~----- 178 (485)
..+....||...|.+|+|.|||..++|||.|..-||||++||+++..+++|++.|-.++|+|....-......+.
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 566668899999999999999999999999999999999999999999999999999999987433221111110
Q ss_pred -hhhhh-HhhhccCCCCCceEEECC-CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceee
Q 011473 179 -RMAVE-KEIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 179 -~~~~~-~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
|...+ ..|. .+...++.+.|+| .|+||++++.|. +++|...++++++.+.||++ +.+.+...
T Consensus 374 LR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis----------- 439 (459)
T KOG0272|consen 374 LRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDIS----------- 439 (459)
T ss_pred ecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEec-----------
Confidence 00001 1122 2334468899998 899999999997 99999999999999999994 43333331
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
+|+..++|++.|.+|++|.
T Consensus 440 ---------------~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 ---------------PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------cCCceEEEeccCceeeecc
Confidence 7899999999999999996
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.4e-29 Score=257.44 Aligned_cols=194 Identities=18% Similarity=0.213 Sum_probs=173.1
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+.+|+.++|+|+|+|++||+|.+. +..++-.++||..||+.+.|+|-|-++||+|.|++.++|....
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----------- 524 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----------- 524 (707)
T ss_pred eecccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-----------
Confidence 447899999999999999999997 8888989999999999999999999999999999999997655
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
-.+++.+.+|-+.|.|++|+|++.++||||.|++||+||+.+|..+|.|.+|...
T Consensus 525 ---~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~---------------------- 579 (707)
T KOG0263|consen 525 ---NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP---------------------- 579 (707)
T ss_pred ---CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc----------------------
Confidence 3456669999999999999999999999999999999999999999999764433
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
+.+++|||+|+||++|+.++ |++||+.+|+++..+.+|.+.+..+.||
T Consensus 580 --------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS----------------- 628 (707)
T KOG0263|consen 580 --------------VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS----------------- 628 (707)
T ss_pred --------------eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe-----------------
Confidence 45999999999999999998 9999999999999999998666655442
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.|+.+||+|+.|+.+++|+..-+.
T Consensus 629 -----------~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 629 -----------RDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -----------cCCCEEEecCCCCeEEEEEchhhc
Confidence 678899999999999999776443
No 31
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=235.70 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=167.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+.++..+++||.+|.+++|... +...+++|.||++.|.++.|+|. +..+|||+.||++++|+..+
T Consensus 184 S~ds~~laT~swsG~~kvW~~~--~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------- 250 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWSVP--QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------- 250 (459)
T ss_pred ecCCCeEEEeecCCceeEeecC--CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-----------
Confidence 4578899999999999999997 67889999999999999999997 55899999999999998876
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.+++..+.+|...|..++|+|+|++|+|+|-|.+-|+||++|++.+...+
T Consensus 251 ---e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE--------------------------- 300 (459)
T KOG0272|consen 251 ---ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE--------------------------- 300 (459)
T ss_pred ---CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc---------------------------
Confidence 57778899999999999999999999999999999999999988653333
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
.+...+.+++|.+||.++++|+.|. -+|||+.||+++-.+.+|...+--+.+
T Consensus 301 ---------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f------------------ 353 (459)
T KOG0272|consen 301 ---------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF------------------ 353 (459)
T ss_pred ---------ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE------------------
Confidence 3334556999999999999999998 699999999999999999754432222
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.|++..+|||++|++++||+-|--+.+
T Consensus 354 ----------sPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 354 ----------SPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred ----------CCCceEEeecCCCCcEEEeeecccccc
Confidence 289999999999999999988754443
No 32
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=219.10 Aligned_cols=146 Identities=49% Similarity=0.829 Sum_probs=134.4
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcC---ccCCceEEE---EEeCcEEEecCC-CCCCCCCcccCCCccccccccC
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNE---YYNNLIFHR---VIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~---~y~g~~f~r---v~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
..+.|++.++||.|..|+|++||..||.+. -|.+..||| .+++||+||||. .++++++.++|+..|+||+ ..
T Consensus 14 ~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den-Fi 92 (167)
T KOG0865|consen 14 GEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN-FI 92 (167)
T ss_pred CccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC-cE
Confidence 567889999999999999999999999743 299999999 345799999998 5789999999999999998 88
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011473 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
++|..||.|+||+.+||+|+|||||++....|||++|+|||+|.+||+++++++.... ++++|..+|.|.+|+.
T Consensus 93 lkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~ 166 (167)
T KOG0865|consen 93 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQ 166 (167)
T ss_pred EecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999764 6799999999999974
No 33
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.4e-28 Score=227.42 Aligned_cols=210 Identities=16% Similarity=0.223 Sum_probs=175.0
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
.+++|-..+-.|..++++|+|.||+|+|||+. .+.++.++.||+.+|+||+|=-+ .++.|+|.|++|++|+...+.+
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~--~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEcc--CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH
Confidence 45777777778889999999999999999997 67899999999999999999544 4899999999999998776554
Q ss_pred CCc----------------------------------------------------------------eeEEE-EcCCCce
Q 011473 92 PES----------------------------------------------------------------EVSFR-LKSDTNL 106 (485)
Q Consensus 92 ~~~----------------------------------------------------------------~~~~~-~~~~~~l 106 (485)
.+. .+.|+ .++.+++
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 321 01122 1233455
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhh
Q 011473 107 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEI 186 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i 186 (485)
..+.+|+..|+.+.||||++++|++|-|+.||+||-++|+.+.+|.+|+..+
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V---------------------------- 412 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV---------------------------- 412 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee----------------------------
Confidence 6678999999999999999999999999999999999999998887766543
Q ss_pred hccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccC
Q 011473 187 EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANES 265 (485)
Q Consensus 187 ~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 265 (485)
-.++|+.|.++|++||.|. +|+|++.+.++..-+.||++.+- ++++.
T Consensus 413 --------YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf-----------------~vDws------- 460 (480)
T KOG0271|consen 413 --------YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF-----------------AVDWS------- 460 (480)
T ss_pred --------EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE-----------------EEEec-------
Confidence 3789999999999999987 99999999999999999985333 22222
Q ss_pred CCCCCCCeEEEeeecCceEEEEe
Q 011473 266 KEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 266 ~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
||+..+|||.+|.-+++|.
T Consensus 461 ----pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 ----PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ----CCCceeecCCCceEEEeec
Confidence 9999999999999999995
No 34
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=8.2e-27 Score=214.11 Aligned_cols=186 Identities=13% Similarity=0.191 Sum_probs=162.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
...++++|.|.++.+||++ +++.+..|.||.+.|.+|+++| ++++++||+.|+..++||++. +
T Consensus 156 D~~ilT~SGD~TCalWDie--~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--------------~ 219 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIE--TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--------------G 219 (343)
T ss_pred CCceEecCCCceEEEEEcc--cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC--------------c
Confidence 3467888899999999998 8999999999999999999999 999999999999999999987 4
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
.+.+.|.+|.+.|++++|.|+|.-|||||.|+++|+||++..+.+..|..
T Consensus 220 ~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~------------------------------ 269 (343)
T KOG0286|consen 220 QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH------------------------------ 269 (343)
T ss_pred ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc------------------------------
Confidence 55666999999999999999999999999999999999999998888741
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccc
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 262 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~ 262 (485)
......+++++||.+|++|..|..+ ++.+||.-.++.+.+|.+|+..+.++.+
T Consensus 270 ----~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---------------------- 323 (343)
T KOG0286|consen 270 ----DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---------------------- 323 (343)
T ss_pred ----CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE----------------------
Confidence 0122356799999999999998766 4999999999999999999953333222
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 263 NESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
.||++-+||||-|..++||.
T Consensus 324 ------s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 ------SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------CCCCcEEEecchhHheeecC
Confidence 28999999999999999994
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=226.13 Aligned_cols=241 Identities=16% Similarity=0.189 Sum_probs=177.5
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCC-CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADS-NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.++++++++|++.|.+..||++-.+. -+..+++.+|..+|..+.||||.++|++|+.|..+.+||+.++.+...
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~----- 306 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL----- 306 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh-----
Confidence 47799999999999999999985222 246789999999999999999999999999999999999998765432
Q ss_pred EcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccch-hHHHhhhcCCCcccc--cccc-
Q 011473 100 LKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL-EVAQDLQRSDAPLYR--LEAI- 174 (485)
Q Consensus 100 ~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~-~~i~~~~~~~~~~~~--~~~~- 174 (485)
+. ++...+.+++|.|||..|++|+.|++|..||+. |..+....+-- .-+.+++-..+..+- +...
T Consensus 307 ---------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 307 ---------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred ---------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 22 234679999999999999999999999999975 33333221100 011112211111110 0000
Q ss_pred ---cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCc
Q 011473 175 ---DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 250 (485)
Q Consensus 175 ---~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~ 250 (485)
-+.+...+++. ......++.+.+.|.+|+|+++.=. .++++||++..++++.+.||. +.+|++.|||+|
T Consensus 377 ~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk-q~~fiIrSCFgg----- 449 (519)
T KOG0293|consen 377 KIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK-QGHFIIRSCFGG----- 449 (519)
T ss_pred ceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc-ccceEEEeccCC-----
Confidence 00111111111 1244556789999999998877655 569999999999999999998 889999999998
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCc
Q 011473 251 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGR 302 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~r 302 (485)
-|..++||||+|++||||+++..+..+-..++-
T Consensus 450 -------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 450 -------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred -------------------CCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence 678899999999999999999888776433333
No 36
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.6e-26 Score=208.72 Aligned_cols=258 Identities=14% Similarity=0.083 Sum_probs=194.2
Q ss_pred CCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCC---CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 8 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD---SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 84 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~---~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W 84 (485)
+..+..+.-+..... +..++++++.|.++.+|++..+ .+.+++.|+||+..|..+..++||++.+|+|.|+++++|
T Consensus 12 ~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred cCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 344443333333333 5678999999999999998643 356789999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcC
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 164 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 164 (485)
|+++ ++....|.+|...|.+++||||.+.+++||.|++|++||+..+ |..++.+.
T Consensus 91 Dl~~--------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~---------- 145 (315)
T KOG0279|consen 91 DLAT--------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHED---------- 145 (315)
T ss_pred EecC--------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecC----------
Confidence 9988 4555669999999999999999999999999999999998654 44444220
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCC--CCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeee
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES--SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIA 241 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~--g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s 241 (485)
.+...++++.|+|+ .-+|++++.|+ +|+||+.+-++..++-+|...+..+.+
T Consensus 146 ------------------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v- 200 (315)
T KOG0279|consen 146 ------------------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV- 200 (315)
T ss_pred ------------------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE-
Confidence 01234579999999 67999999987 999999999999998888754443322
Q ss_pred eccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCC
Q 011473 242 LYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIG 321 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~ 321 (485)
.||+.+.+||.+|+.++||+-.+.+-.+ .+++.++.|-.- ..|..
T Consensus 201 ---------------------------SpDGslcasGgkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~-------fspnr 245 (315)
T KOG0279|consen 201 ---------------------------SPDGSLCASGGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLC-------FSPNR 245 (315)
T ss_pred ---------------------------CCCCCEEecCCCCceEEEEEccCCceeE-eccCCCeEeeEE-------ecCCc
Confidence 2999999999999999999988766543 333444444321 11112
Q ss_pred CCccCCC-CCEEEEEeCCeEEEEEecCCCCh
Q 011473 322 NSVTTSL-PDNVILHTTMGDIHMKLYPEECP 351 (485)
Q Consensus 322 ~~~~~~~-~~~~~~~t~~G~i~i~L~~~~aP 351 (485)
.|.-..+ ...-++++.-+.++.+|-.|.+-
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIG 276 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccc
Confidence 2222222 22667889999999999888543
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=8e-26 Score=235.06 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=168.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+|++.++++++.|++|+|||+. ..+..++++++|...|++++|+|++++++||+.|++|++||+++
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------------ 277 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------------ 277 (456)
T ss_pred ECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC------------
Confidence 36778899999999999999994 35688999999999999999999999999999999999999987
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK--LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
++++..+.+|...|++++|++||++|++++.|+.|+|||+.+++ ++..+.++
T Consensus 278 --~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------------------------ 331 (456)
T KOG0266|consen 278 --GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA------------------------ 331 (456)
T ss_pred --CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC------------------------
Confidence 45566699999999999999999999999999999999999999 44444220
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
.... ++.++.|+|+|+||++++.++ +++||+..+.+++.+.+|....+ ..|.-.
T Consensus 332 ---------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~----~~~~~~----------- 386 (456)
T KOG0266|consen 332 ---------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR----CIFSPT----------- 386 (456)
T ss_pred ---------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce----eEeccc-----------
Confidence 0112 567999999999999999996 99999999999999999884322 222210
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
..+++.++.+|++|+.|++|+......+
T Consensus 387 ----------~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 387 ----------LSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred ----------ccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 0278899999999999999998765444
No 38
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-26 Score=209.38 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=179.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++++.+++|++.|+++|+||+. ++++.+.|.||...|.+++|+||.++++|+|.|.+|++|++-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~--~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-------------- 135 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLA--TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-------------- 135 (315)
T ss_pred ccCCceEEeccccceEEEEEec--CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec--------------
Confidence 6688999999999999999998 778899999999999999999999999999999999999975
Q ss_pred CCCceEEeecC--CccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 102 SDTNLFEILKS--KTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 102 ~~~~l~~~~~~--~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+.+.+++..+ ...|+|+.|+|+ ..+++++|.|++||+||+++.++...+.+|...++.+..+++........+.|
T Consensus 136 -g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 136 -GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred -ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 3445555544 688999999998 78999999999999999999999999999999998888888755444433333
Q ss_pred chhhh----hHhhh-ccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcce
Q 011473 178 RRMAV----EKEIE-KTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 178 ~~~~~----~~~i~-~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
.-+-+ .+.+. .....++.+++|+|+.-.|+.++..+|||||+.++.++..+.-..... +. .....
T Consensus 215 ~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-----s~-----~~~~~ 284 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-----SS-----KAGDP 284 (315)
T ss_pred eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc-----cc-----ccCCc
Confidence 22111 11111 134566789999999999999998899999999999987774432111 00 00001
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.. +...+. .|+..+.+|..|+-|++|--
T Consensus 285 ~c--------lslaws-~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 285 IC--------LSLAWS-ADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EE--------EEEEEc-CCCcEEEeeecCCcEEEEEe
Confidence 11 111222 78888899999999999953
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=4.5e-25 Score=226.21 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=165.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCC-----------------------------CCcceEEEecCCCCeEEEEEcCCCCEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARAD-----------------------------SNEPLISKKVHMGPVKVMRYNPVFDTV 72 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~-----------------------------~~~~~~~l~~h~~~V~~l~fspd~~~l 72 (485)
+++..++|.|-.|..|++|.+... +....+++-||.+||..++|+|+.++|
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL 466 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL 466 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccce
Confidence 456668888889999999987610 112345577999999999999999999
Q ss_pred EEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 73 ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 73 ~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
+|||.|+++|+|.+.+ .+++..+++|..+|+.+.|+|-|-+|||+|.|++.++|.....+.+|.+-
T Consensus 467 lScSED~svRLWsl~t--------------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 467 LSCSEDSSVRLWSLDT--------------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeccCCcceeeeeccc--------------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 9999999999999887 45666789999999999999999999999999999999998888777775
Q ss_pred cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011473 153 ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
+|... +.++.|+|+++|+++||.|. +++||+.+|..||++.||
T Consensus 533 ghlsD------------------------------------V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH 576 (707)
T KOG0263|consen 533 GHLSD------------------------------------VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH 576 (707)
T ss_pred ccccc------------------------------------cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC
Confidence 54332 24889999999999999986 999999999999999999
Q ss_pred CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 232 ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 232 ~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.+++-.+.+ .|++..++||++|++|.+|+-...+.+
T Consensus 577 ~~~V~al~~----------------------------Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 577 KGPVTALAF----------------------------SPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred CCceEEEEE----------------------------cCCCceEeecccCCcEEEEEcCCCcch
Confidence 865553333 178899999999999999988766655
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=4.6e-26 Score=213.17 Aligned_cols=193 Identities=18% Similarity=0.234 Sum_probs=136.7
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc------------
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------------ 94 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------------ 94 (485)
.+|||..|++|+|||.+ +..+++.|.||++.|.|+.|..- .++|||.|.+|++||.++++....
T Consensus 209 kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred hhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 44555555555555555 44555555555555555555553 555555555555555555544321
Q ss_pred --------------eeEEEEcCC---CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH
Q 011473 95 --------------EVSFRLKSD---TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 157 (485)
Q Consensus 95 --------------~~~~~~~~~---~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~ 157 (485)
.-+|++.+. +..+.+.+|.+.|+.+.| |.++++++|.|++||+|++.|+++++++.+|.+.
T Consensus 285 f~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRG 362 (499)
T KOG0281|consen 285 FSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG 362 (499)
T ss_pred EeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhccccc
Confidence 001222222 234567899999999999 4679999999999999999999999999888777
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
|.+.| ..|+++++||.+. |++||+..|.|+|+++|||.-+|
T Consensus 363 IAClQ--------------------------------------Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR 404 (499)
T KOG0281|consen 363 IACLQ--------------------------------------YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 404 (499)
T ss_pred ceehh--------------------------------------ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence 66444 2789999999986 99999999999999999997788
Q ss_pred eeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 237 FLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
++.| |..-|+||.-|++|++|+-..+.
T Consensus 405 ciRF------------------------------d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 405 CIRF------------------------------DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred heee------------------------------cCceeeeccccceEEEEeccccc
Confidence 7766 23347899999999999876544
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=225.65 Aligned_cols=197 Identities=20% Similarity=0.274 Sum_probs=169.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++..+++++.|+.+++|++. ... .++++.+|...|..++|+||++++++++.|++|++||+...
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~--~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---------- 235 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLE--GIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---------- 235 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecc--cccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC----------
Confidence 5678889999999999999995 444 77888899999999999999999999999999999998321
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+..++.+++|...|++++|+|+|+++++|+.|++|||||++++++++.+.+|..
T Consensus 236 ---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----------------------- 289 (456)
T KOG0266|consen 236 ---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----------------------- 289 (456)
T ss_pred ---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----------------------
Confidence 456778999999999999999999999999999999999999999999865433
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe--EEEeecccCCccceeeeeeccCCccCcceeeee
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK--VSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~--~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
.++.++|+++|++|++++.++ |++||+.+++ +++.+.+++... .+....|.
T Consensus 290 -------------~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fs------------ 343 (456)
T KOG0266|consen 290 -------------GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFS------------ 343 (456)
T ss_pred -------------ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEEC------------
Confidence 335899999999999999887 9999999999 778888877432 44444443
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
+++..+++++.|+.+++|.-+..+..
T Consensus 344 -------------p~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 344 -------------PNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred -------------CCCcEEEEecCCCeEEEEEccCCcce
Confidence 88999999999999999988765544
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-25 Score=198.29 Aligned_cols=224 Identities=11% Similarity=0.146 Sum_probs=176.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.++++++.|.+||+|+.. .+.+++++.+|...|..++.+.|...++||+.|+.+.+||++|++..+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---------- 95 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---------- 95 (307)
T ss_pred CCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee----------
Confidence 67788899999999999987 789999999999999999999999999999999999999999965544
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccchhHHHhhhcCCCcc--------ccccc
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAPL--------YRLEA 173 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~ 173 (485)
.|++|.+.|+.+.|+.+...+++||-|.++|+||-++. +.++++++....+..+.-....+ ++.-+
T Consensus 96 ----r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 96 ----RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred ----ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 49999999999999999999999999999999998864 45777766554443332222211 11111
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcce
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
.-.|+ .....-..++++++|+++|++++.++.++ +++.|-.||++++.+.||. +-.|-.-.++.
T Consensus 172 iR~G~------l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-n~eykldc~l~-------- 236 (307)
T KOG0316|consen 172 IRKGT------LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-NMEYKLDCCLN-------- 236 (307)
T ss_pred eecce------eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-cceeeeeeeec--------
Confidence 11111 12223456789999999999999999997 8999999999999999998 33333334443
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
...+.+++||+|+.+|+|+-.+....
T Consensus 237 -----------------qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 237 -----------------QSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred -----------------ccceeEEeccCCceEEEEEeccceee
Confidence 23456899999999999998765544
No 43
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.3e-24 Score=216.53 Aligned_cols=189 Identities=14% Similarity=0.213 Sum_probs=163.0
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.-+++.++.=|.+-||++. +...+...++|...+++++++|||+++|+|+.||.|++||..+ +.
T Consensus 320 DWiA~g~~klgQLlVweWq--sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--------------gf 383 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQ--SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--------------GF 383 (893)
T ss_pred CEEEEcCCccceEEEEEee--ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC--------------ce
Confidence 3466666677899999998 5555666779999999999999999999999999999999876 67
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhH
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 184 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (485)
++.+|..|++.|+.+.|+.+|+.+++.|.||+||.||+...++.|+|..
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~------------------------------- 432 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS------------------------------- 432 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-------------------------------
Confidence 8888999999999999999999999999999999999999999999843
Q ss_pred hhhccCCCCCceEEECCCCCEEEEecCCC--eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccc
Q 011473 185 EIEKTETAPPSNAIFDESSNFLIYATLLG--IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 262 (485)
Q Consensus 185 ~i~~~~~~~~~~i~fd~~g~~l~~~s~~~--i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~ 262 (485)
+.....++++-||+|..+..|+.+. |++|+.+||+++.++.|||+++-.+.+ +
T Consensus 433 ----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f---~------------------ 487 (893)
T KOG0291|consen 433 ----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF---S------------------ 487 (893)
T ss_pred ----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE---c------------------
Confidence 1122346899999999999999874 999999999999999999987653333 2
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 263 NESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
++..+++|||-|.+|++|+--..
T Consensus 488 -------~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 488 -------PDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred -------cccCeEEeccccceEEEEEeecc
Confidence 77789999999999999987543
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=1.5e-25 Score=218.16 Aligned_cols=222 Identities=20% Similarity=0.243 Sum_probs=167.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.+.|++|++.|+.|+||++. ..+.+++++.||+.+|..++|+++|..++|+|.|+.|++||++||++.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~----------- 293 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL----------- 293 (503)
T ss_pred eeeEEEecCCCceEEEEEEe-cCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-----------
Confidence 67899999999999999998 368999999999999999999999999999999999999999996543
Q ss_pred CceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc-------
Q 011473 104 TNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID------- 175 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------- 175 (485)
..|... ..++|+.|.||+ +.|++|+.|+.|+.||+++|++++.|+.|+..+..+.+-+..-+.+.+.+
T Consensus 294 ---~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW 369 (503)
T KOG0282|consen 294 ---SRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW 369 (503)
T ss_pred ---EEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence 334322 357999999999 89999999999999999999999999888876655443222111111100
Q ss_pred --------------------------ccchhh--------------------hhHhhhccCCCC-CceEEECCCCCEEEE
Q 011473 176 --------------------------FGRRMA--------------------VEKEIEKTETAP-PSNAIFDESSNFLIY 208 (485)
Q Consensus 176 --------------------------~g~~~~--------------------~~~~i~~~~~~~-~~~i~fd~~g~~l~~ 208 (485)
.+..++ .++..+.+...- ...+.|||||+||++
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 000000 011122221111 258899999999999
Q ss_pred ecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 011473 209 ATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 287 (485)
Q Consensus 209 ~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f 287 (485)
|..+| +.+||..|-+++.++..|+. .+.-..|. +-.+.-+||++-|+.|++|
T Consensus 450 GdsdG~v~~wdwkt~kl~~~lkah~~---~ci~v~wH------------------------P~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKLKAHDQ---PCIGVDWH------------------------PVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ecCCccEEEeechhhhhhhccccCCc---ceEEEEec------------------------CCCcceeEecccCceeEec
Confidence 99998 99999999999999999862 22333443 1345568999999999999
Q ss_pred e
Q 011473 288 S 288 (485)
Q Consensus 288 ~ 288 (485)
.
T Consensus 503 d 503 (503)
T KOG0282|consen 503 D 503 (503)
T ss_pred C
Confidence 4
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=2.7e-25 Score=212.07 Aligned_cols=220 Identities=13% Similarity=0.190 Sum_probs=172.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++..++||+.+|.|++|+.+ ...++.+..|. ..|++++|+|....++|||.||+|+|||....
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpn---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----------- 212 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPN---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----------- 212 (464)
T ss_pred ccCCCEEEEcCCCceEEecccc---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-----------
Confidence 5678899999999999999985 34455566554 99999999999999999999999999997653
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
++-..+.+|.-.|.+++|+|.-..+|+||.|..|++||.++|+|+.++-+
T Consensus 213 ---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~--------------------------- 262 (464)
T KOG0284|consen 213 ---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG--------------------------- 262 (464)
T ss_pred ---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh---------------------------
Confidence 33344799999999999999999999999999999999999999877633
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeee-----eecc--C-------
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI-----ALYQ--G------- 245 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~-----s~~~--~------- 245 (485)
....+..+.|.++|+||+++|.|. ++++|+.+-+.++++++|+..++.+.. ++|- |
T Consensus 263 ---------HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 263 ---------HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred ---------ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 223456889999999999999987 999999999999999998865554422 1221 0
Q ss_pred --CccCcceeeeecccccc-ccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 246 --DRSSKKVRKIPAAAANA-NESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 246 --~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
....+.+..++++.... =.+.|. |=+-+||||+.|.++++|++..|.+.
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~h-PlGhil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYH-PLGHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred EeccccccccCCCcccccceeeeecc-ccceeEeecCCCcceeeeccCCCCCc
Confidence 11223333333333222 234555 77889999999999999999887654
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=201.17 Aligned_cols=213 Identities=15% Similarity=0.172 Sum_probs=180.6
Q ss_pred EEEEe-CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011473 15 EWVYK-QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 15 ~~~~~-~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
.|+.. .-+|....+++|+.|++|+|||+. ++++..++.||...|..|++|+-..++.||+.|+.|+.||++..++.+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDla--tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLA--TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR 229 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcc--cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH
Confidence 34432 346778899999999999999998 899999999999999999999999999999999999999999876666
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
. +.+|-+.|.|++..|.-..|+||+.|.++||||+++...+.++.+|...+
T Consensus 230 ~--------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V--------------- 280 (460)
T KOG0285|consen 230 H--------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV--------------- 280 (460)
T ss_pred H--------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc---------------
Confidence 5 88999999999999999999999999999999999999998887654443
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcce
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
.++.+.|..-.+++||.|+ |++||+..|+-..++..|..++|.+.+
T Consensus 281 ---------------------~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l------------ 327 (460)
T KOG0285|consen 281 ---------------------ASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL------------ 327 (460)
T ss_pred ---------------------eeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec------------
Confidence 4666766677789999997 999999999999999888877773332
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCC
Q 011473 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEK 308 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~ 308 (485)
-|+..+||||+.|+ |+.|.-.+.+-..|.-+++.|.|..
T Consensus 328 ----------------hP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl 366 (460)
T KOG0285|consen 328 ----------------HPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTL 366 (460)
T ss_pred ----------------CCchhhhhccCCcc-ceeccCCccchhhccccccceeeee
Confidence 17777899999998 9999888777776655567776653
No 47
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=7e-24 Score=205.75 Aligned_cols=216 Identities=12% Similarity=0.158 Sum_probs=175.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-------
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------- 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------- 94 (485)
+.++.+||+|+.||.+|||+. .+.++.+|..|++||.+|.|+.+|++|+|++.|+++-+||..++..-+.
T Consensus 244 n~~G~~LatG~~~G~~riw~~---~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK---DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec---CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 456889999999999999998 4778899999999999999999999999999999999999876543211
Q ss_pred --------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 011473 95 --------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 95 --------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
..++.+...++...+.+|...|.++.|+|.|..|+|+|.|++++||....+.+...+.+|
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 122344456778889999999999999999999999999999999999988888888777
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
.+.|....++|. ..+...| .+-.|++++.++ +++||+..|.+++++.+|.
T Consensus 401 skei~t~~wsp~----------------------------g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~ 452 (524)
T KOG0273|consen 401 SKEIYTIKWSPT----------------------------GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ 452 (524)
T ss_pred ccceeeEeecCC----------------------------CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC
Confidence 766655555543 1112222 344677777776 9999999999999998887
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCC
Q 011473 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 296 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~ 296 (485)
.++.-+.+ .|++..+|||+-|+.+.+|+-++.+...
T Consensus 453 ~pVysvaf----------------------------S~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 453 EPVYSVAF----------------------------SPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred CceEEEEe----------------------------cCCCcEEEecCCCCeeEeccccchheeE
Confidence 66663333 2889999999999999999999888774
No 48
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=9.2e-23 Score=213.37 Aligned_cols=217 Identities=10% Similarity=0.090 Sum_probs=161.4
Q ss_pred EeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEE
Q 011473 30 SDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE 108 (485)
Q Consensus 30 s~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~ 108 (485)
+|+.++.|++|+.. ...++..+.+|.++|.+++|+|+ +.+|+||+.|++|++||+.+...... ....++..
T Consensus 49 gGG~~gvI~L~~~~--r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------~i~~p~~~ 120 (568)
T PTZ00420 49 GGGLIGAIRLENQM--RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------EIKDPQCI 120 (568)
T ss_pred CCCceeEEEeeecC--CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc------ccccceEE
Confidence 35567889999875 55678899999999999999997 78999999999999999875322110 00234556
Q ss_pred eecCCccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhh
Q 011473 109 ILKSKTTVSAIEVSPDGKQ-FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 187 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~~-lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 187 (485)
+.+|...|.+++|+|++.. ||+++.|++|+|||+++++.+..+..
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~---------------------------------- 166 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM---------------------------------- 166 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec----------------------------------
Confidence 7899999999999999976 47899999999999999987655521
Q ss_pred ccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCcc--cee------------eeeeccC-------
Q 011473 188 KTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENND--RFL------------RIALYQG------- 245 (485)
Q Consensus 188 ~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~--r~~------------~~s~~~~------- 245 (485)
...+.+++|+|+|++|++++.++ |++||+.+++++..+.+|++.. +.+ ..+-|..
T Consensus 167 ---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 167 ---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred ---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 01246899999999999999876 9999999999999998887431 211 1111111
Q ss_pred ----CccCcceeeeecccccc-ccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 246 ----DRSSKKVRKIPAAAANA-NESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 246 ----~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
......+....++.+.. +.+.++.+++.++++|++|+.||+|.-..
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 11122333444444444 45677777899999999999999997643
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=209.13 Aligned_cols=207 Identities=13% Similarity=0.244 Sum_probs=170.2
Q ss_pred CceeeecCCCC-CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 011473 1 MMLMIRLPFIP-GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG 79 (485)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg 79 (485)
|+..|.+.-.| .+|.|+.. ...+++|++|..||||+.+ +.+.+++|+.|..-|.+++.||...+++|+|.|-
T Consensus 47 mVksfeV~~~PvRa~kfiaR-----knWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm 119 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIAR-----KNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM 119 (794)
T ss_pred eeeeeeecccchhhheeeec-----cceEEEecCCceEEEEecc--cceeeEEeeccccceeeeeecCCCCeEEecCCcc
Confidence 34444554444 44555533 3468889999999999997 8999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHH
Q 011473 80 IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVA 158 (485)
Q Consensus 80 ~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i 158 (485)
+|++||-+. .| .+...|.+|...|.+++|+| |.+.||++|.|++|+||.+.+..+..++++|.+-+
T Consensus 120 ~iKlW~we~--------~w-----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 120 TIKLWDWEN--------EW-----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred EEEEeeccC--------ce-----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 999998764 12 24456999999999999999 78999999999999999999999888887765544
Q ss_pred HhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCC--CEEEEecCCC-eEEEEcccCeEEEeecccCCcc
Q 011473 159 QDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS--NFLIYATLLG-IKIVNLHTNKVSRILGKVENND 235 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g--~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~ 235 (485)
+++.|=+-| .||++|++|. |||||.+|..|++++.||..++
T Consensus 187 ------------------------------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 187 ------------------------------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV 230 (794)
T ss_pred ------------------------------------ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence 366664444 4999999986 9999999999999999998555
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
. +.+|. |.-.+|+||++|++++||+...
T Consensus 231 s---~v~fh-------------------------p~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 231 S---FVFFH-------------------------PELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred e---EEEec-------------------------CCCcEEEEecCCccEEEecCcc
Confidence 4 34443 6667899999999999999864
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.8e-24 Score=219.66 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=158.3
Q ss_pred ceEEEEeCCCCeEEEEEcCC--CCCc-ceE----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 25 AGLAISDRNSSFVHIYDARA--DSNE-PLI----SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~--~~~~-~~~----~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
..+++++|.|+++++|++.. ++.. .+. +...|...|+||+++|+.+++||||.|++.++|+++.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--------- 494 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--------- 494 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC---------
Confidence 44789999999999999973 1111 111 2237999999999999999999999999999999875
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
.+-+..+.+|+..|+|+.|+|..+.+||+|.|++||||.+.+..|+++|++|...+
T Consensus 495 -----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV------------------- 550 (775)
T KOG0319|consen 495 -----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV------------------- 550 (775)
T ss_pred -----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee-------------------
Confidence 33455699999999999999999999999999999999999999999998865443
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
..++|=.+|+.|++++.+| ||+|++.|++|+.++..|++ |..++++-
T Consensus 551 -----------------lra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D--rvWaL~~~------------- 598 (775)
T KOG0319|consen 551 -----------------LRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND--RVWALSVS------------- 598 (775)
T ss_pred -----------------EeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc--eeEEEeec-------------
Confidence 2567888999999999999 89999999999999999984 55566542
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
++..+|+||++|++|-+|..-
T Consensus 599 -------------~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 599 -------------PLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred -------------CccceeEecCCCeEEEEeecC
Confidence 444589999999999999764
No 51
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=2e-23 Score=187.97 Aligned_cols=229 Identities=15% Similarity=0.188 Sum_probs=168.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.|+...+++++ -..||+||+++.+..|+.++++|++.|++|.|.-||+++.|+|+||++||||++...+.+.
T Consensus 49 Tpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~------- 120 (311)
T KOG0315|consen 49 TPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN------- 120 (311)
T ss_pred cCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh-------
Confidence 34555666664 4679999999666679999999999999999999999999999999999999987544443
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCCCcccccccccccchh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
-.|.++|+++..+|+...|+++..++.|++||+.+..|.+.+ .|...++..+.-.++..+-......|+-.
T Consensus 121 --------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 121 --------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred --------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 346689999999999999999999999999999998876655 33333333332222211111111112111
Q ss_pred ---------hhhH----hhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC-eEEEeecccCCccceeeeeeccC
Q 011473 181 ---------AVEK----EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN-KVSRILGKVENNDRFLRIALYQG 245 (485)
Q Consensus 181 ---------~~~~----~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg-~~v~~~~~~~~~~r~~~~s~~~~ 245 (485)
+.+. .++.+. .-...+.|||+++||+++|.+. ++||++.+- ++-..+.+|+ |++==..|+
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~---rWvWdc~FS- 267 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ---RWVWDCAFS- 267 (311)
T ss_pred EEEccCCCccccceEhhheeccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC---ceEEeeeec-
Confidence 1110 122222 2235778999999999999986 999999887 6667788887 666555665
Q ss_pred CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 246 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.|+..|+||+.|+..++|+.+..+.+
T Consensus 268 ------------------------~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 268 ------------------------ADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ------------------------cCccEEEecCCCCceeecccccCcee
Confidence 68999999999999999999877755
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=211.96 Aligned_cols=223 Identities=15% Similarity=0.180 Sum_probs=172.1
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC------CCCc
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ------FPES 94 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~------~~~~ 94 (485)
.+|+++++++|++||.|+|||.. ++-|..+|..|++.|+.+.|+..++.++|+|.||+|+.||+..++ .|..
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~--SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQ--SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEecc--CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 37899999999999999999998 788999999999999999999999999999999999999887543 3311
Q ss_pred ------------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEE
Q 011473 95 ------------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK-LRR 149 (485)
Q Consensus 95 ------------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~-~~~ 149 (485)
..+|.+++++.+-.+.+|.++|.+++|+|+|..||++|.|++||+||+-... .+.
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE 515 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE 515 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee
Confidence 3458889999999999999999999999999999999999999999986542 222
Q ss_pred EeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee
Q 011473 150 VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 228 (485)
Q Consensus 150 ~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~ 228 (485)
+++- ...+..++|.|+|+-|++++.+| |.+||+..+..+..+
T Consensus 516 tl~i-------------------------------------~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 516 TLEI-------------------------------------RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eEee-------------------------------------ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 2210 01124889999999999999997 999999998888777
Q ss_pred cccCC--ccceeeeeeccCC-ccC-cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011473 229 GKVEN--NDRFLRIALYQGD-RSS-KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 229 ~~~~~--~~r~~~~s~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
.+-.+ ..|.. ...+-.+ ..+ +...++++ .+|+..|++|.+.+.|.|++-++.-.
T Consensus 559 dgrkD~~~gR~~-~D~~ta~~sa~~K~Ftti~y-----------SaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 559 DGRKDLSGGRKE-TDRITAENSAKGKTFTTICY-----------SADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred cchhhccccccc-cceeehhhcccCCceEEEEE-----------cCCCCEEEecCCcccEEEEECchhhe
Confidence 55321 11100 0001000 000 11222222 38999999999999999999876433
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4e-22 Score=181.66 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=153.0
Q ss_pred ceEEEEeCCCCeEEEEEcCC-CCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 25 AGLAISDRNSSFVHIYDARA-DSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~-~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+.+++|++.|++||||+..+ ++-.+...+. +|+..|.+++|+|.|++|+++|.|.++-||.-..+++
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef----------- 95 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF----------- 95 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce-----------
Confidence 67999999999999999862 2345555564 8999999999999999999999999999995443221
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---EEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK---LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.++..+.+|...|-|++||++|++|||+|.|+.|-||.+..+. |+..+.+|.+.
T Consensus 96 -ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD---------------------- 152 (312)
T KOG0645|consen 96 -ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD---------------------- 152 (312)
T ss_pred -eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc----------------------
Confidence 2355599999999999999999999999999999999987554 44455554433
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc---cCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH---TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~---tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
+..+.|+|+--+|+++|.+. ||+|.-. .-+|+.+|++|+..+..+.| .
T Consensus 153 --------------VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F---~----------- 204 (312)
T KOG0645|consen 153 --------------VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF---D----------- 204 (312)
T ss_pred --------------ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe---c-----------
Confidence 24789999999999999986 9999877 34799999999854443333 1
Q ss_pred eccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 256 PAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+.+..++|+++|.+++||-..
T Consensus 205 --------------~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 205 --------------NIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred --------------CCCceEEEecCCcceEeeeec
Confidence 556678999999999999755
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=188.70 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=175.3
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-----
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----- 94 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~----- 94 (485)
+-+|+..++++|+.|....||++. ++..+..+.+|+..|+++.||.||.+||||+.+|.|++|...++.....
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~--~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDIS--TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEcc--CCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 335688899999999999999997 7788899999999999999999999999999999999998776543211
Q ss_pred -----------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 95 -----------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 -----------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.-+|+...+...+.+.+|..++++=.|.|||++++++..|++|++||++||+.+..+
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence 222556666778889999999999999999999999999999999999999988877
Q ss_pred ccchh-HHHhh-------------hcCCC--------ccc-------------------ccccccccch-----------
Q 011473 152 DESLE-VAQDL-------------QRSDA--------PLY-------------------RLEAIDFGRR----------- 179 (485)
Q Consensus 152 ~~~~~-~i~~~-------------~~~~~--------~~~-------------------~~~~~~~g~~----------- 179 (485)
..... ...++ ...+. ++. .+....+...
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 31100 00000 00000 000 0000000000
Q ss_pred -hhh----hHhhhc--cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011473 180 -MAV----EKEIEK--TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 180 -~~~----~~~i~~--~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
+++ ...++. .....+..+.|.+ ..+|++++.+| |+.||..||+++.++.||...+- .+++
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il--~f~l--------- 376 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL--DFAL--------- 376 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee--EEEE---------
Confidence 000 001111 1233467999998 78999999988 89999999999999999985433 3333
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.|+..+++|+|+|++.++|.-
T Consensus 377 -----------------s~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 377 -----------------SPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred -----------------cCCCcEEEEecCCCeEEEEec
Confidence 278899999999999999954
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-22 Score=186.35 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=179.0
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEcCCCCCCCCceeE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~--dg~i~~Wd~~t~~~~~~~~~ 97 (485)
..++++.+++++++|.+++|||.. ++..++++..++-.|..++|......++.++. |.+||+.++.+
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--------- 89 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--------- 89 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec---------
Confidence 345678888888899999999998 78899999988889999999888887777776 88999999877
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhc-----------CCC
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQR-----------SDA 166 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~-----------~~~ 166 (485)
.+.++-|.||+..|.+++.+|-+..|+++|.|++||+||+++.+|...+.-..+++.+... ..+
T Consensus 90 -----NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 90 -----NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred -----CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE
Confidence 4455669999999999999999999999999999999999998887766444333332111 123
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccC
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQG 245 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~ 245 (485)
.+|++...+.|.... -.+.......+..+.|||+|++|+.++..+ ++++|..+|.++.++.++....+.-.-++|
T Consensus 165 kLyD~Rs~dkgPF~t--f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f-- 240 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTT--FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF-- 240 (311)
T ss_pred EEEEecccCCCCcee--EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE--
Confidence 445555444443211 122334456678999999999999999987 999999999998888776533222211222
Q ss_pred CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 246 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.||+.+|.+|++|++|++|+-+.++.+
T Consensus 241 -----------------------tPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 241 -----------------------TPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred -----------------------CCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 299999999999999999999766544
No 56
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=191.89 Aligned_cols=196 Identities=13% Similarity=0.154 Sum_probs=163.0
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC
Q 011473 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t 88 (485)
-...++++.+. +-.++|++.|.+|+.||+. ++-++.+|.+|...|..++.+.||.+++|||.|.++++|-.++
T Consensus 194 h~vS~V~f~P~-----gd~ilS~srD~tik~We~~--tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t 266 (406)
T KOG0295|consen 194 HGVSSVFFLPL-----GDHILSCSRDNTIKAWECD--TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT 266 (406)
T ss_pred cceeeEEEEec-----CCeeeecccccceeEEecc--cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc
Confidence 34455666544 3578999999999999997 8999999999999999999999999999999999999999887
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD---------------GKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd---------------g~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.+ +...++.|.-+|-|++|-|. |+++.++|.|++||+||+.+|.|+-++-+
T Consensus 267 ~~--------------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 267 KQ--------------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred ch--------------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence 44 34448889999999999663 35899999999999999999999999866
Q ss_pred chhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 154 SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
|... +..++|+|-|+||+++.+++ +++||+.+++|.+++..|+
T Consensus 333 hdnw------------------------------------Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 333 HDNW------------------------------------VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ccce------------------------------------eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 4433 34889999999999999987 9999999999999999888
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
. |+..-=|. .+.-.++||+=|..+++|-.
T Consensus 377 h---fvt~lDfh-------------------------~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 H---FVTSLDFH-------------------------KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred c---eeEEEecC-------------------------CCCceEEeccccceeeeeec
Confidence 3 33221121 22227899999999999954
No 57
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=4.2e-22 Score=207.22 Aligned_cols=194 Identities=13% Similarity=0.226 Sum_probs=144.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC-----CcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARADS-----NEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~-----~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
++.++++++.|++|+|||+..+. ..++.++.+|...|.+|+|+|++ .+|+|++.|++|++||+++
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t--------- 157 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER--------- 157 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---------
Confidence 56689999999999999996221 14678899999999999999986 6999999999999999987
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+..+..+.+|...|.+++|+|||.+||+++.|++|+|||+++++.+.++..|..
T Consensus 158 -----g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~--------------------- 211 (493)
T PTZ00421 158 -----GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS--------------------- 211 (493)
T ss_pred -----CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC---------------------
Confidence 344556888999999999999999999999999999999999998877744211
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEec----CCC-eEEEEcccCe-EEEeecccCCccceeeeeeccCCccCcc
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT----LLG-IKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s----~~~-i~v~d~~tg~-~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
.....+.|.+++..|++++ .++ |++||+.+.+ .+.....+... .+.+..|.
T Consensus 212 --------------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--~~~~~~~d------- 268 (493)
T PTZ00421 212 --------------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--ALFIPFFD------- 268 (493)
T ss_pred --------------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--ceEEEEEc-------
Confidence 1123567888888777654 234 9999997643 33333322211 11111222
Q ss_pred eeeeeccccccccCCCCCCCCeEEEee-ecCceEEEEecCCCC
Q 011473 252 VRKIPAAAANANESKEPFSDPTLLCCA-FKRHRIYLFSRREPE 293 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~-~~d~~i~~f~~~~~~ 293 (485)
+|+.++++| .+|+.|++|.-+..+
T Consensus 269 ------------------~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 269 ------------------EDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ------------------CCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 565555555 479999999887544
No 58
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=2.9e-22 Score=194.62 Aligned_cols=171 Identities=18% Similarity=0.328 Sum_probs=146.4
Q ss_pred eeecCCCC-CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 011473 4 MIRLPFIP-GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 82 (485)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~ 82 (485)
.+.+.-.| -.+.|+... -+++++.|+.|+++.+. ...|+.++.||.++|.+|.|+|.+.+|+|||.|++++
T Consensus 313 ~f~~~s~~~lDVdW~~~~------~F~ts~td~~i~V~kv~--~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND------EFATSSTDGCIHVCKVG--EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred eeeeccCCccceEEecCc------eEeecCCCceEEEEEec--CCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 34444455 448898542 46777789999999996 6789999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 83 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK---------QFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 83 ~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~---------~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
||.... +.....|..|...+..+.|||+|. .+|+++.|++|++||+..|.++.+|..
T Consensus 385 iWs~~~--------------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 385 IWSMGQ--------------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred eeecCC--------------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 998754 445566889999999999999654 899999999999999999999998843
Q ss_pred chhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 154 SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
+..++.+++|+|+|+|||+|+.++ +++|++.++++++.+++..
T Consensus 451 ------------------------------------H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 451 ------------------------------------HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ------------------------------------CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 234556999999999999999997 9999999999999998876
No 59
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=4.6e-22 Score=182.99 Aligned_cols=213 Identities=12% Similarity=0.161 Sum_probs=172.4
Q ss_pred ecCCCCCeEEEEE-eCCCCcceEEEEeCCCCeEEEEEcCCC----CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 011473 6 RLPFIPGAVEWVY-KQGDVKAGLAISDRNSSFVHIYDARAD----SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI 80 (485)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~l~vs~s~d~~I~iwd~~~~----~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~ 80 (485)
+....|-.+.|+- ...+|.+.+++.|+-|+..-||++... .....+.|.+|++.+.|+.|-+ ...|+|+|.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCce
Confidence 3445566677764 466889999999999999999999622 1244577899999999999987 457899999999
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
+.+||++++ ..+..|.+|.+.|.+++++| +++.|++|+.|+..+|||++.+.++++|.+|...|
T Consensus 168 CalWDie~g--------------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI- 232 (343)
T KOG0286|consen 168 CALWDIETG--------------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI- 232 (343)
T ss_pred EEEEEcccc--------------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-
Confidence 999999984 45555999999999999999 99999999999999999999999999997754433
Q ss_pred hhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCcccee
Q 011473 160 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFL 238 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~ 238 (485)
+++.|-|+|.-+++||.++ .+++|+..++.+.++.+....
T Consensus 233 -----------------------------------Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~---- 273 (343)
T KOG0286|consen 233 -----------------------------------NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII---- 273 (343)
T ss_pred -----------------------------------ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc----
Confidence 5899999999999999998 899999999888777643311
Q ss_pred eeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 239 RIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
-++.++++. ..+.|+..|+.|.++++|+.-..+.+
T Consensus 274 -----------~gitSv~FS-----------~SGRlLfagy~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 274 -----------CGITSVAFS-----------KSGRLLFAGYDDFTCNVWDTLKGERV 308 (343)
T ss_pred -----------CCceeEEEc-----------ccccEEEeeecCCceeEeeccccceE
Confidence 122333222 56888999999999999987654444
No 60
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.6e-23 Score=195.24 Aligned_cols=220 Identities=13% Similarity=0.147 Sum_probs=180.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC-CCCC-------
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL-QFPE------- 93 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~-~~~~------- 93 (485)
.|.-.+++++++|.+|++||.. ++++++.|+||.+.|..++|+..|+++++||.|-.+++||.++. ++.+
T Consensus 117 hp~~~~v~~as~d~tikv~D~~--tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 117 HPSEALVVSASEDATIKVFDTE--TGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred ccCceEEEEecCCceEEEEEcc--chhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 4567789999999999999997 88999999999999999999999999999999999999988762 2211
Q ss_pred ---------------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 94 ---------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 94 ---------------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
....|++.++-+++.|.+|...|..++.+.||..+|+++.|.++++|-+.+++|...+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 12348888899999999999999999999999999999999999999999999988888
Q ss_pred cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011473 153 ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
+|..++.+.++.+...|- + +...... ...|++|.+++.|+ ||+||+.||.|+.++.+|
T Consensus 275 ~hEh~vEci~wap~~~~~--~------------i~~at~~-------~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYP--S------------ISEATGS-------TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred ccccceEEEEecccccCc--c------------hhhccCC-------CCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 888888887776642220 0 0000000 11568999999987 999999999999999999
Q ss_pred CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 232 ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 232 ~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
+.-+|-+ +|. |.+..|+|..+|+++++|+-+..
T Consensus 334 dnwVr~~---af~-------------------------p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 334 DNWVRGV---AFS-------------------------PGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred cceeeee---EEc-------------------------CCCeEEEEEecCCcEEEEEeccc
Confidence 9545533 333 78899999999999999987643
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=5.4e-22 Score=183.15 Aligned_cols=244 Identities=14% Similarity=0.132 Sum_probs=187.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.|++.+++||+.|..|.+|++. +..+-..++++|+++|..|.|.+|+..++|||.|++++.||+++++
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----------- 123 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----------- 123 (338)
T ss_pred CCCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-----------
Confidence 5688899999999999999986 3445577889999999999999999999999999999999999954
Q ss_pred CCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..+.+++|...|+++.-+.-|. ++.+++.|+++||||+++..+++++.+
T Consensus 124 ---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--------------------------- 173 (338)
T KOG0265|consen 124 ---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--------------------------- 173 (338)
T ss_pred ---eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---------------------------
Confidence 4555999999999999666564 667788899999999999888877633
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCc---------
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK--------- 250 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~--------- 250 (485)
..++.++.|..++.-+++|.-++ ||+||+..+.++.++.||.+++--+.++-++.--..+
T Consensus 174 ----------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw 243 (338)
T KOG0265|consen 174 ----------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW 243 (338)
T ss_pred ----------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence 12335888988999999999887 9999999999999999998777666665444311111
Q ss_pred ---------c-eeeeeccccc---ccc-CCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCC--Ccccc
Q 011473 251 ---------K-VRKIPAAAAN---ANE-SKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKP--PPDEL 314 (485)
Q Consensus 251 ---------~-~~~~~~~~~~---~~~-~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p--~~e~~ 314 (485)
. +.-.+-..+. |++ -+|. |+.+.+..|+.|..+|+|+...-..+.+.+++.+..|+.. +.|.+
T Consensus 244 d~rp~~p~~R~v~if~g~~hnfeknlL~csws-p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS-PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred EecccCCCCceEEEeecchhhhhhhcceeecc-CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 1 1111111111 122 2344 9999999999999999999877777777788888888865 45544
Q ss_pred cccc
Q 011473 315 LAVS 318 (485)
Q Consensus 315 ~~~~ 318 (485)
+...
T Consensus 323 ils~ 326 (338)
T KOG0265|consen 323 ILSC 326 (338)
T ss_pred EEEe
Confidence 4443
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=190.64 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=144.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011473 56 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 56 h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
....|.|+.+ |.+.++||..|.+|++||..+..+. +.+.+|++.|.|+.|... .+++||+|.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~--------------~~L~GHtGSVLCLqyd~r--viisGSSDs 257 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECL--------------KILTGHTGSVLCLQYDER--VIVSGSSDS 257 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHH--------------HhhhcCCCcEEeeeccce--EEEecCCCc
Confidence 4568999999 4578999999999999999995544 449999999999999965 999999999
Q ss_pred cEEEEECCCCcEEEEeccchhH-----------HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCC
Q 011473 136 RIRVFWFRTGKLRRVYDESLEV-----------AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 204 (485)
Q Consensus 136 ~I~iwd~~tg~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~ 204 (485)
+|+|||+.+|+++.++-.|-.. +++..+...+++++.+. +-++ -+.+.....+.++.+.|| .+
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sp---s~it-~rrVLvGHrAaVNvVdfd--~k 331 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASP---TDIT-LRRVLVGHRAAVNVVDFD--DK 331 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCc---hHHH-HHHHHhhhhhheeeeccc--cc
Confidence 9999999999999988655443 33444444555555544 1122 223334455667888887 46
Q ss_pred EEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 011473 205 FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 283 (485)
Q Consensus 205 ~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~ 283 (485)
||+++|.+. ||+|++.|++++|++.+|. |-+ +|.| -.+.|++|||.|++
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHk---RGI--AClQ-------------------------Yr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHK---RGI--ACLQ-------------------------YRDRLVVSGSSDNT 381 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhccc---ccc--eehh-------------------------ccCeEEEecCCCce
Confidence 999999885 9999999999999999998 433 3433 34678999999999
Q ss_pred EEEEecCCCCCC
Q 011473 284 IYLFSRREPEEP 295 (485)
Q Consensus 284 i~~f~~~~~~~~ 295 (485)
|++|.-+++...
T Consensus 382 IRlwdi~~G~cL 393 (499)
T KOG0281|consen 382 IRLWDIECGACL 393 (499)
T ss_pred EEEEeccccHHH
Confidence 999999887543
No 63
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=4.4e-23 Score=197.06 Aligned_cols=190 Identities=18% Similarity=0.246 Sum_probs=155.5
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+.|+++-|++|+..|.+-+|+.. .......+..|.++|.++.|++++.+++|++.+|+|++|+...
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~--~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------ 169 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGT--SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------ 169 (464)
T ss_pred EcCCCceeEeecccccEEEecCc--eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------
Confidence 35788999999999999999975 3333334568999999999999999999999999999998753
Q ss_pred cCCCceEEeecCC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 101 KSDTNLFEILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 101 ~~~~~l~~~~~~~-~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
..++.+..|+ ..|.+++|||....|+|+|.|++|+|||....+..+.+.+|-
T Consensus 170 ---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg------------------------ 222 (464)
T KOG0284|consen 170 ---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG------------------------ 222 (464)
T ss_pred ---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC------------------------
Confidence 2233355555 889999999999999999999999999999888766664422
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
--+.++.|+|.-.+|++++.+. ||+||..+|+|+.++-+|.. .+--..|+
T Consensus 223 ------------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn---tVl~~~f~-------------- 273 (464)
T KOG0284|consen 223 ------------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN---TVLAVKFN-------------- 273 (464)
T ss_pred ------------CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc---eEEEEEEc--------------
Confidence 2235889999999999999987 99999999999999988872 22223343
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+++-+|+|+++|+.+++|+-|.
T Consensus 274 -----------~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 274 -----------PNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred -----------CCCCeeEEccCCceEEEEehhH
Confidence 6678999999999999999883
No 64
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=176.55 Aligned_cols=217 Identities=11% Similarity=0.122 Sum_probs=165.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.+.+|+|++-|.+||+|.+. ++.|.+++....+.|+.|...||++.||+++. -.||++|+.++. .
T Consensus 9 ~~viLvsA~YDhTIRfWqa~--tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n------------p 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQAL--TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN------------P 73 (311)
T ss_pred CceEEEeccCcceeeeeehh--cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC------------C
Confidence 56799999999999999997 89999999988889999999999999998875 589999998754 4
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC-------------cccc
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA-------------PLYR 170 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~-------------~~~~ 170 (485)
.++..+.+|...|.++.|.-||++++|||.||++||||++.-.|-|.|+-. ..+.++--.+. .+++
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEE
Confidence 467779999999999999999999999999999999999998887777432 33333322221 2222
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE------EEeecccCCccceeeeeec
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV------SRILGKVENNDRFLRIALY 243 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~------v~~~~~~~~~~r~~~~s~~ 243 (485)
+....+.+ ++-......+.++...|||++|+.+...| ..+|++.+++- +..+..|+ ++....+|
T Consensus 153 l~~~~c~~------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~---~~il~C~l 223 (311)
T KOG0315|consen 153 LGENSCTH------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN---GHILRCLL 223 (311)
T ss_pred ccCCcccc------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc---ceEEEEEE
Confidence 21111111 11122335678999999999999999988 89999876432 23334443 33333333
Q ss_pred cCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 244 QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+ ||...|||++.|.++|||+..
T Consensus 224 S-------------------------Pd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 224 S-------------------------PDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred C-------------------------CCCcEEEeecCCceEEEEecC
Confidence 2 999999999999999999764
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=8.5e-23 Score=189.79 Aligned_cols=234 Identities=14% Similarity=0.176 Sum_probs=172.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcce--------EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPL--------ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~--------~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+|+++++++||.||-|.+|+.. +++.- ..|-.|..+|.|+.||.|..++|||+.||.|++|.++++++.
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~--~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl- 298 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYT--TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL- 298 (508)
T ss_pred CCCCceEeeccccceeeeehhc--cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH-
Confidence 7899999999999999999986 44332 234468999999999999999999999999999999885554
Q ss_pred ceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011473 94 SEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
..|. .|+..|+|+.||.|+..++++|-|.++||.-+++||+++.+.+|..++.
T Consensus 299 -------------RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn------------- 352 (508)
T KOG0275|consen 299 -------------RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN------------- 352 (508)
T ss_pred -------------HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc-------------
Confidence 4465 7889999999999999999999999999999999999988887666544
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc----
Q 011473 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR---- 247 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~---- 247 (485)
...|.++|++++++|.++ ||+|+..|++|+.++..-....-...+-++...|
T Consensus 353 -----------------------~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 353 -----------------------EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred -----------------------ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence 678999999999999998 9999999999998885322111111222222111
Q ss_pred ---cCcceeeeeccc-------cccc-----cCCCCCCCCeEEEeeecCceEEEEecCCCCCCCc-cCCCccccCC
Q 011473 248 ---SSKKVRKIPAAA-------ANAN-----ESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPED-ATKGRDIFNE 307 (485)
Q Consensus 248 ---~~~~~~~~~~~~-------~~~~-----~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~-~~~~rd~~n~ 307 (485)
.++.+.-+.|.+ |.+. ...-..|.+-++.+..+|..+|+|+-..++.... .--+||+..-
T Consensus 410 VCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl 485 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL 485 (508)
T ss_pred EEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc
Confidence 112222221111 1110 0111337788899999999999999877665432 1124665544
No 66
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=8.8e-21 Score=197.32 Aligned_cols=201 Identities=11% Similarity=0.167 Sum_probs=150.6
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCC--------Ccc---eEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCC
Q 011473 23 VKAGLAISDRNSSFVHIYDARADS--------NEP---LISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~--------~~~---~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
+++..+++++.+..+..|+...+. +.. ...+.+|.++|++++|+| ++++|+|++.|++|++||+.+..
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 354556777777777888764211 111 124679999999999999 88999999999999999987643
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc
Q 011473 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 169 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 169 (485)
.... ...++..+.+|...|.+++|+|++ .+|++++.|++|+|||+.+++.+..+..|.
T Consensus 110 ~~~~-------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-------------- 168 (493)
T PTZ00421 110 LTQN-------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-------------- 168 (493)
T ss_pred cccc-------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC--------------
Confidence 2211 134567789999999999999986 699999999999999999999877764321
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCcc
Q 011473 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
..+.+++|+|+|++|++++.++ |++||+.+++++..+.+|... + ....+|..
T Consensus 169 ----------------------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-~-~~~~~w~~--- 221 (493)
T PTZ00421 169 ----------------------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-K-SQRCLWAK--- 221 (493)
T ss_pred ----------------------CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-c-ceEEEEcC---
Confidence 1346899999999999999987 999999999999998888632 2 12233331
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEee---ecCceEEEEecCCC
Q 011473 249 SKKVRKIPAAAANANESKEPFSDPTLLCCA---FKRHRIYLFSRREP 292 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~---~~d~~i~~f~~~~~ 292 (485)
....++.+| +.|+.|++|+.+..
T Consensus 222 ---------------------~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 222 ---------------------RKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred ---------------------CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 234555554 45899999998743
No 67
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.88 E-value=4.3e-21 Score=188.65 Aligned_cols=270 Identities=16% Similarity=0.187 Sum_probs=185.1
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--- 94 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--- 94 (485)
.+|++.+++|++.||+|.|||-. +++.+..|. +|++.|.+|+|+||++.++|+|.|.++++||+.+.++.+.
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGk--tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGK--TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCC--CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence 47889999999999999999998 888899998 8999999999999999999999999999999988776533
Q ss_pred ---------eeEEE-----------------EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011473 95 ---------EVSFR-----------------LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 95 ---------~~~~~-----------------~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
.+.|+ ..-...++.+.+|...|++++.+||+++|.+|+.||.|.-||..+|..-
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 11122 1122356678899999999999999999999999999999999988765
Q ss_pred EEe-ccchhHHHhhhcCC-Ccc------------------------cccccc-------cccch--hhhhHh--------
Q 011473 149 RVY-DESLEVAQDLQRSD-APL------------------------YRLEAI-------DFGRR--MAVEKE-------- 185 (485)
Q Consensus 149 ~~~-~~~~~~i~~~~~~~-~~~------------------------~~~~~~-------~~g~~--~~~~~~-------- 185 (485)
+.. +.|...|..++.+. ..+ ..+... ..|.- ++..++
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 433 22222222222211 000 000000 00000 000111
Q ss_pred --hhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE--EeecccCCccceeeee----------------ecc
Q 011473 186 --IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS--RILGKVENNDRFLRIA----------------LYQ 244 (485)
Q Consensus 186 --i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v--~~~~~~~~~~r~~~~s----------------~~~ 244 (485)
...+......+++++|++++++.|..++ ++|+.+..++++ ..+..|.+.+..+++| +|.
T Consensus 436 ~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 1112233457899999999999999998 999999876644 2334454455555544 222
Q ss_pred CCccCcceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 245 GDRSSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
-. ...+.+..+.=++. +..+|+ |+..++|||+-|..|++|+-..|...
T Consensus 516 ~~--s~~~~~~~w~FHtakI~~~aWs-P~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 516 VA--SREVKTNRWAFHTAKINCVAWS-PNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred cc--cCceecceeeeeeeeEEEEEeC-CCceEEEeccccceEEEEEccChhhh
Confidence 11 11123333332222 667888 99999999999999999998776544
No 68
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=9.6e-21 Score=174.94 Aligned_cols=205 Identities=14% Similarity=0.188 Sum_probs=167.3
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCC------CCCCC
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPH------TLQFP 92 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~------t~~~~ 92 (485)
.+..++..++|++.|++|+.||++ +++..+.+++|.+-|+++.-+.-| .++.|++.|+++++||++ +++..
T Consensus 97 ~~~~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k 174 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK 174 (338)
T ss_pred eeccCCCEEEEecCCceEEEEecc--cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc
Confidence 345678889999999999999998 899999999999999999854444 478899999999999998 33111
Q ss_pred --Cc-------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CcE
Q 011473 93 --ES-------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT----GKL 147 (485)
Q Consensus 93 --~~-------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t----g~~ 147 (485)
.. ...|+++....++.+.+|...|+.++.||+|.++.+-+.|.++++||++. .+|
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 00 23488887888999999999999999999999999999999999999873 456
Q ss_pred EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEE
Q 011473 148 RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSR 226 (485)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~ 226 (485)
+..+.++...+. + ..-..+|+|+++++..++.+. +.+||..+.+++.
T Consensus 255 v~if~g~~hnfe------------------------k--------nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 255 VKIFQGHIHNFE------------------------K--------NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred EEEeecchhhhh------------------------h--------hcceeeccCCCCccccccccceEEEeecccccEEE
Confidence 777766443321 1 123678999999999999987 9999999999999
Q ss_pred eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 011473 227 ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 286 (485)
Q Consensus 227 ~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~ 286 (485)
.+.||.+.+..+.|. |...+|.+++.|.+||+
T Consensus 303 klpGh~gsvn~~~Fh----------------------------p~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 303 KLPGHYGSVNEVDFH----------------------------PTEPIILSCSSDKTIYL 334 (338)
T ss_pred EcCCcceeEEEeeec----------------------------CCCcEEEEeccCceeEe
Confidence 999999766544441 66677899999999997
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.6e-21 Score=176.29 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=162.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD--TVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~--~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++.++||||.|.+|+|||++ ....+..+-.|.+.|+++.|.++.. .|+||+.||.|.+|+...+++..
T Consensus 52 s~~~~aSGssDetI~IYDm~--k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~-------- 121 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMR--KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK-------- 121 (362)
T ss_pred cceeEeccCCCCcEEEEecc--chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee--------
Confidence 56789999999999999998 6777888889999999999999876 89999999999999998755443
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC------------ccc
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA------------PLY 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~------------~~~ 169 (485)
.++.|++.|+.++++|.|+.-++.+.|+.+|+||+..|+.-..+.-.... ..+.|++. .+|
T Consensus 122 ------slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~~~i~i~ 194 (362)
T KOG0294|consen 122 ------SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVSGRNKIDIY 194 (362)
T ss_pred ------eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEEeccEEEEE
Confidence 48999999999999999999999999999999999999864443111000 00222221 223
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCcc
Q 011473 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
+++... +.+++..+ ....++.|. ++.+|++|.+++ |++||...+.++..+-+|+..++ .+..|-
T Consensus 195 q~d~A~------v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK--~i~~~~---- 259 (362)
T KOG0294|consen 195 QLDNAS------VFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK--DIASYT---- 259 (362)
T ss_pred ecccHh------Hhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee--eeEEEe----
Confidence 332221 11222222 123467777 677888888877 99999999999999999985444 333332
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 249 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.++..+|+|++.|+.|++|..+
T Consensus 260 --------------------~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 260 --------------------NPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred --------------------cCCceEEEEeccCceEEEEEcc
Confidence 2788999999999999999875
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.7e-21 Score=186.55 Aligned_cols=188 Identities=20% Similarity=0.254 Sum_probs=150.5
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.++.|++.|...|.|+|||.+ +...++.+.+|+.||..+.|+|++ .++++||.|+.+++||+.+.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------------ 143 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------------ 143 (487)
T ss_pred cCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------------
Confidence 478999999999999999976 556788899999999999999965 57888999999999999762
Q ss_pred CCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-cEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.-..++.+|+..|.|.+|+|- +.+++|||.|++||+||+++. ..+.+++
T Consensus 144 --~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--------------------------- 194 (487)
T KOG0310|consen 144 --YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--------------------------- 194 (487)
T ss_pred --EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---------------------------
Confidence 224468999999999999995 568999999999999999876 5555552
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCe-EEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~-~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
...++.++.|=|+|..+++|+-..+|+||+.+|. ++.....|...+.++.+ .
T Consensus 195 ----------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l-----------------~ 247 (487)
T KOG0310|consen 195 ----------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL-----------------A 247 (487)
T ss_pred ----------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEe-----------------e
Confidence 2345668999999999999999999999999665 43333324434443333 1
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.|++.+.||+-|+++++|+-..
T Consensus 248 -----------s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 248 -----------SDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred -----------cCCceEeecccccceEEEEccc
Confidence 4668899999999999998543
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=4.5e-20 Score=205.25 Aligned_cols=187 Identities=16% Similarity=0.222 Sum_probs=145.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.++++++.|++|+|||+. +++.+..+.+|.+.|++++|+| ++.+|+|++.|++|++||+.++.
T Consensus 544 ~~~~las~~~Dg~v~lWd~~--~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~------------ 609 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVA--RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV------------ 609 (793)
T ss_pred CCCEEEEEeCCCeEEEEECC--CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc------------
Confidence 35578888899999999997 6788889999999999999997 78899999999999999997633
Q ss_pred CCceEEeecCCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 103 DTNLFEILKSKTTVSAIEVS-PDGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~s-pdg~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.+..+.. ...+.+++|+ ++|.+||+|+.|+.|++||+++++. +.++.+|
T Consensus 610 --~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-------------------------- 660 (793)
T PLN00181 610 --SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-------------------------- 660 (793)
T ss_pred --EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC--------------------------
Confidence 3334543 3578999995 5799999999999999999987653 3333221
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC------eEEEeecccCCccceeeeeeccCCccCccee
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN------KVSRILGKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg------~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
...+..+.|. ++.+|++++.++ |++||+.++ ++++.+.+|.....++. |
T Consensus 661 ----------~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~---~---------- 716 (793)
T PLN00181 661 ----------SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG---L---------- 716 (793)
T ss_pred ----------CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE---E----------
Confidence 1234578887 788999999887 999998743 56677777763333222 1
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.+++.+|+||+.|+++++|+...+
T Consensus 717 ---------------s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 717 ---------------SVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ---------------cCCCCEEEEEeCCCEEEEEECCCC
Confidence 156778999999999999987654
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=194.02 Aligned_cols=211 Identities=13% Similarity=0.189 Sum_probs=152.2
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCC--------------------------------C-----------------------
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARA--------------------------------D----------------------- 45 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~--------------------------------~----------------------- 45 (485)
.++++++||+|+.|+.||||.+.. .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 377999999999999999998753 0
Q ss_pred ---CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEc
Q 011473 46 ---SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 122 (485)
Q Consensus 46 ---~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~s 122 (485)
..+|++.+.||.+.|..|.||.+ ++|+|+|.|++||||++.. ..+|..|. |...|+|++|+
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~--------------~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR--------------KECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC--------------cceeeEEe-cCCeeEEEEec
Confidence 12456678899999999999875 5899999999999999876 55666664 88999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC
Q 011473 123 P-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 201 (485)
Q Consensus 123 p-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~ 201 (485)
| |.++|++||.|++||||++...+++.-.|- ...+++++|.|
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-------------------------------------~~lITAvcy~P 461 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-------------------------------------RDLITAVCYSP 461 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhh-------------------------------------hhhheeEEecc
Confidence 9 889999999999999999988776533221 02346999999
Q ss_pred CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCc-ceeeeeccccccccCCCCCCCCeEEEeee
Q 011473 202 SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK-KVRKIPAAAANANESKEPFSDPTLLCCAF 279 (485)
Q Consensus 202 ~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 279 (485)
+|++.++|+..| ++++++...+++....= .+-+++..+. .++.++.. ..++.-|+-++
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I----------~~~~~Kk~~~~rITG~Q~~----------p~~~~~vLVTS 521 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHI----------RLHNKKKKQGKRITGLQFF----------PGDPDEVLVTS 521 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeE----------eeccCccccCceeeeeEec----------CCCCCeEEEec
Confidence 999999999999 78888887776533311 1111111111 12221111 12222455667
Q ss_pred cCceEEEEecCCCCCCCccCCCccccCC
Q 011473 280 KRHRIYLFSRREPEEPEDATKGRDIFNE 307 (485)
Q Consensus 280 ~d~~i~~f~~~~~~~~~~~~~~rd~~n~ 307 (485)
.|.||+||+-+..+.+++ -++..|.
T Consensus 522 nDSrIRI~d~~~~~lv~K---fKG~~n~ 546 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLVHK---FKGFRNT 546 (712)
T ss_pred CCCceEEEeccchhhhhh---hcccccC
Confidence 899999999977666643 2444443
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-20 Score=170.75 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=153.8
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
..+++++.||+++|||+. ....|++.++.|+..|.++.|++. .+.++++|.|++|++||... ..
T Consensus 74 ~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--------------~~ 138 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--------------PN 138 (311)
T ss_pred ceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC--------------Cc
Confidence 355566679999999986 456799999999999999999995 55788889999999999865 45
Q ss_pred ceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 105 NLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.+.++.+|..-|...+||| .+..||++|.|+++++||++. |+.+ .+..|...+
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Ei------------------------ 193 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEI------------------------ 193 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEecccee------------------------
Confidence 5667999999999999999 789999999999999999985 4443 243332222
Q ss_pred hHhhhccCCCCCceEEECC-CCCEEEEecCCC-eEEEEccc-CeEEEeecccCCccceeeeeeccC--------------
Q 011473 183 EKEIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHT-NKVSRILGKVENNDRFLRIALYQG-------------- 245 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~-------------- 245 (485)
.++.|+. +-+.|++|+.++ |+.||+.. ...+..+-+|+-.+|-+.+|-+..
T Consensus 194 ------------l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 194 ------------LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred ------------EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence 2444543 445777788887 99999986 446677888876777666653321
Q ss_pred -CccCcceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 246 -DRSSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 246 -~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+.++.....-.+.++. ...-++.-++..+|+.+-|..+|+|++
T Consensus 262 w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 262 WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 11111111111122222 234455568999999999999999975
No 74
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=9.8e-21 Score=192.75 Aligned_cols=246 Identities=12% Similarity=0.109 Sum_probs=179.9
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 23 VKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.++.+++|+|.|++|++|.++.+. ..++....+|...|.+|+++..+ ..++|+|.|+++++|++..-+.....+.+
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~- 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL- 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee-
Confidence 356799999999999999884211 23445556999999999998765 58999999999999987541111111111
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+.-+....|...|+|++++|+.+.+||||.|++.+||+++.+.++.++.+|.+-
T Consensus 454 ----~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG---------------------- 507 (775)
T KOG0319|consen 454 ----TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG---------------------- 507 (775)
T ss_pred ----hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc----------------------
Confidence 111234568889999999999999999999999999999999999998765433
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
++++.|++..+.|+++|.|. ||||.+.+..|++++.||+.. +.++.|-
T Consensus 508 --------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a---Vlra~F~-------------- 556 (775)
T KOG0319|consen 508 --------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA---VLRASFI-------------- 556 (775)
T ss_pred --------------eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce---eEeeeee--------------
Confidence 36999999999999999987 999999999999999999842 3334442
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTM 338 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~ 338 (485)
.++..|+|+..|+-++||+-...+=. ..-|.+|++. +.-. ..+..-.+.|--
T Consensus 557 -----------~~~~qliS~~adGliKlWnikt~eC~----~tlD~H~Drv----WaL~---------~~~~~~~~~tgg 608 (775)
T KOG0319|consen 557 -----------RNGKQLISAGADGLIKLWNIKTNECE----MTLDAHNDRV----WALS---------VSPLLDMFVTGG 608 (775)
T ss_pred -----------eCCcEEEeccCCCcEEEEeccchhhh----hhhhhcccee----EEEe---------ecCccceeEecC
Confidence 45677899999999999987543222 1345555542 1111 111122556667
Q ss_pred eEEEEEecCCCChHHH
Q 011473 339 GDIHMKLYPEECPKTV 354 (485)
Q Consensus 339 G~i~i~L~~~~aP~~~ 354 (485)
|+=+|.+|.|..-...
T Consensus 609 ~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 609 GDGRIIFWKDVTEEEQ 624 (775)
T ss_pred CCeEEEEeecCcHHHH
Confidence 7788889998655433
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=3.5e-21 Score=178.27 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=134.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.|...+|+|++.|++|++||.. .....+.++ ....+|.++.|+|.|++|+.|..--+++++|++|+++-..
T Consensus 181 HPre~ILiS~srD~tvKlFDfs--K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----- 253 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFS--KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----- 253 (430)
T ss_pred cchhheEEeccCCCeEEEEecc--cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----
Confidence 4567899999999999999986 222222222 3567999999999999999999999999999999664211
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.. .-..|+..|+++.+|+.|++.+|+|.||.|||||=.+++|++++..
T Consensus 254 ---an---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-------------------------- 301 (430)
T KOG0640|consen 254 ---AN---PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-------------------------- 301 (430)
T ss_pred ---cC---cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--------------------------
Confidence 00 1246889999999999999999999999999999999999877632
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
.+....+++..|..+|+||++.+.+. +|+|.+.||+++..+.|-
T Consensus 302 --------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 302 --------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred --------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 34556678999999999999999998 899999999999988653
No 76
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.3e-21 Score=196.09 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=165.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
..-.++++--.|.|++||.+ -+.+++.|..|.+||..+.|||+..+++||+.|-.|++|+..+ .
T Consensus 20 ~rPwILtslHsG~IQlWDYR--M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--------------r 83 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--------------R 83 (1202)
T ss_pred CCCEEEEeecCceeeeehhh--hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--------------c
Confidence 33455666678999999998 6789999999999999999999999999999999999997654 6
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
++++++.+|-..|..+.|++.=-+++++|.|.+||||+..+++|+.++.+|-.+
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY-------------------------- 137 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY-------------------------- 137 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE--------------------------
Confidence 788889999999999999999999999999999999999999999999775443
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc-cCCccce--eeeeeccCCccCcceeeeeccc
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK-VENNDRF--LRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~-~~~~~r~--~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
+.+..|.|.-..++++|.|. |++||+..-+--..-.+ -+...|- ..-++|+.. ..+...-+++
T Consensus 138 ----------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~---DaVVK~VLEG 204 (1202)
T KOG0292|consen 138 ----------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT---DAVVKHVLEG 204 (1202)
T ss_pred ----------EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc---Ceeeeeeecc
Confidence 24677999999999999986 99999853221111111 0001111 111344320 0112222233
Q ss_pred ccc-ccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCC
Q 011473 260 ANA-NESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNE 307 (485)
Q Consensus 260 ~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~ 307 (485)
++. ..-...-|.-.+|+||++|..|++|-=.+.+.-|-. .-|+=||+
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD-tcrgH~nn 252 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD-TCRGHYNN 252 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeeh-hhhcccCC
Confidence 333 111111255578999999999999987777766532 24666665
No 77
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=6.9e-20 Score=180.23 Aligned_cols=188 Identities=18% Similarity=0.179 Sum_probs=142.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.+..++++++|++|.+|+-. ..+...++..|+.-|.|++|+|||+.++|++.||.|.++|-.+++
T Consensus 159 RPfRi~T~sdDn~v~ffeGP--PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge------------- 223 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGP--PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE------------- 223 (603)
T ss_pred CceEEEeccCCCeEEEeeCC--CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-------------
Confidence 67789999999999999875 556677788999999999999999999999999999999988754
Q ss_pred CceEEee---cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhh----cCCCcccccccccc
Q 011473 104 TNLFEIL---KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQ----RSDAPLYRLEAIDF 176 (485)
Q Consensus 104 ~~l~~~~---~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~ 176 (485)
.+..+. +|++.|.+++||||+++|+|+|.|.++||||+.+.++++++.-..+ +..++ |..+.+.-+....+
T Consensus 224 -~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 224 -KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred -EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcE
Confidence 444465 8999999999999999999999999999999999999999843332 11111 22232222211100
Q ss_pred cch-----hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011473 177 GRR-----MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 177 g~~-----~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
-.- ....+.+ ..+...+++++.+++|++|.+|+.+| |.-|++.+|..-+..+
T Consensus 302 in~ln~~d~~~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred EEEecccCCChhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 000 0011112 23444568999999999999999999 9999999998766653
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=1.9e-19 Score=172.29 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=168.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|++||+. +......+..|...+..+.|+|+++.+++++.|+.|++||..+.
T Consensus 18 ~~~~~~l~~~~~~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------ 83 (289)
T cd00200 18 SPDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------------ 83 (289)
T ss_pred cCCCCEEEEeecCcEEEEEEee--CCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------------
Confidence 3456778888889999999997 56678888899999999999999999999999999999998763
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
..+..+..|...+.+++|+|+++++++++.|+.|++||+.+++.+..+..+...+..+.+.+...+-......+.-..
T Consensus 84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 344457788889999999999999999888999999999999998888766666666666553111111110110000
Q ss_pred h----hHhhh--ccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceee
Q 011473 182 V----EKEIE--KTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 182 ~----~~~i~--~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
. .+.+. ......+.++.|+|+++.|++++.++ +++||+.+++++..+..+......+ .|.
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---~~~---------- 228 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV---AFS---------- 228 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE---EEc----------
Confidence 0 00011 12233568999999999999988776 9999999999888886665322211 111
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
++..++++++.|+++++|+.+.
T Consensus 229 ---------------~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 229 ---------------PDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ---------------CCCcEEEEEcCCCcEEEEEcCC
Confidence 5678889999999999998764
No 79
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.7e-20 Score=189.00 Aligned_cols=199 Identities=14% Similarity=0.210 Sum_probs=162.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.|.+-+.|||++|.+|++|+.+ +..++.+|.||-..|..+.||+..-+|+|+|.|.+|+||+..+
T Consensus 60 H~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs------------- 124 (1202)
T KOG0292|consen 60 HPTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS------------- 124 (1202)
T ss_pred cCCCCeEEecCCccEEEEEecc--cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-------------
Confidence 4567799999999999999997 7889999999999999999999999999999999999999876
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------EEEEec
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK-----------------------------LRRVYD 152 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~-----------------------------~~~~~~ 152 (485)
.+++..+.+|...|.|..|+|....++++|.|.+|||||+.--+ +.++++
T Consensus 125 -r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 -RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred -CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 56677799999999999999999999999999999999975211 112446
Q ss_pred cchhHHHhhhcCCC-------------cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEE
Q 011473 153 ESLEVAQDLQRSDA-------------PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVN 218 (485)
Q Consensus 153 ~~~~~i~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d 218 (485)
+|.+-+.-.++.+. ++|++. ..-++|.+--..+...++++.|+|...+|++.+.|+ |++||
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn-----etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-----ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEec-----cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 66666655555552 222221 113455555566777889999999999999999987 99999
Q ss_pred cccCeEEEeecccCCccceeeeeec
Q 011473 219 LHTNKVSRILGKVENNDRFLRIALY 243 (485)
Q Consensus 219 ~~tg~~v~~~~~~~~~~r~~~~s~~ 243 (485)
....+.+++++... .||..++.-
T Consensus 279 m~kRt~v~tfrren--dRFW~laah 301 (1202)
T KOG0292|consen 279 MTKRTSVQTFRREN--DRFWILAAH 301 (1202)
T ss_pred cccccceeeeeccC--CeEEEEEec
Confidence 99999999997654 588887753
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=173.43 Aligned_cols=240 Identities=17% Similarity=0.232 Sum_probs=173.5
Q ss_pred CCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011473 11 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
...|+|+..++ +...+++++.|..|+||... ..........|.++|+.+..+|.|++|+++|.|+++.+-|.+++.
T Consensus 261 ~kki~~v~~~~--~~~~v~~aSad~~i~vws~~--~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 261 TKKITSVKFHK--DLDTVITASADEIIRVWSVP--LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ceEEEEEEecc--chhheeecCCcceEEeeccc--cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 46688887754 56678888899999999986 444556667899999999999999999999999999888887743
Q ss_pred CCCceeEEEEcCCCceEEeec--CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc
Q 011473 91 FPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 168 (485)
.+-.... ..-.+++++|+|||..|++|..|+.++|||+.++..+..|++|..
T Consensus 337 --------------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~------------ 390 (506)
T KOG0289|consen 337 --------------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG------------ 390 (506)
T ss_pred --------------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC------------
Confidence 2222222 224479999999999999999999999999999887777765443
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
++.+|+|+++|.||+++++++ |++||++..+..+++.-.+..
T Consensus 391 ------------------------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~------------- 433 (506)
T KOG0289|consen 391 ------------------------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK------------- 433 (506)
T ss_pred ------------------------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-------------
Confidence 345899999999999999998 999999887766666444310
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCC
Q 011473 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTS 327 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~ 327 (485)
++.+.++ +..++.++.++.|-+||++.+....=.+.. -++. -...++-..-+
T Consensus 434 ---~v~s~~f-----------D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~-----~~~~---------~sg~st~v~Fg 485 (506)
T KOG0289|consen 434 ---EVNSLSF-----------DQSGTYLGIAGSDLQVYICKKKTKSWTEIK-----ELAD---------HSGLSTGVRFG 485 (506)
T ss_pred ---cceeEEE-----------cCCCCeEEeecceeEEEEEecccccceeee-----hhhh---------cccccceeeec
Confidence 1222222 266888999999999999976543222110 0111 11011222334
Q ss_pred CCCEEEEEeCCeEEEEEec
Q 011473 328 LPDNVILHTTMGDIHMKLY 346 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~ 346 (485)
..+.++..|+++++ +.||
T Consensus 486 ~~aq~l~s~smd~~-l~~~ 503 (506)
T KOG0289|consen 486 EHAQYLASTSMDAI-LRLY 503 (506)
T ss_pred ccceEEeeccchhh-eEEe
Confidence 55677888888876 4443
No 81
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=164.75 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=161.2
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.++|.+++|++||-|.++-||.=..+..+++.+|+||...|.|++||++|.+||+||+|+.|-+|.+.....
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------- 139 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------- 139 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------
Confidence 457899999999999999999765456689999999999999999999999999999999999996542110
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT---GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t---g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
-.+...++.|...|-.+.|+|.-..|+++|.|.+||+|+-.. -.|++++++|.
T Consensus 140 ---fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~--------------------- 195 (312)
T KOG0645|consen 140 ---FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE--------------------- 195 (312)
T ss_pred ---EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc---------------------
Confidence 123455889999999999999999999999999999998762 34677776522
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc-------CeEE---------EeecccCCccceee
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT-------NKVS---------RILGKVENNDRFLR 239 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t-------g~~v---------~~~~~~~~~~r~~~ 239 (485)
.++++++|+++|..|++++.++ ++||-..+ +++. .+-++.. .
T Consensus 196 ---------------~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~------~ 254 (312)
T KOG0645|consen 196 ---------------NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDD------A 254 (312)
T ss_pred ---------------ceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCC------E
Confidence 2468999999999999999997 99998432 2221 1112221 2
Q ss_pred eeeccCCcc----Ccceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 240 IALYQGDRS----SKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 240 ~s~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+.+|+.... .-.++...-.+++. +...|++.-+.+|+||++|+.+++|.-
T Consensus 255 i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 255 IRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred EEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 235543211 11122211122333 667788656889999999999999964
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=1.7e-19 Score=171.35 Aligned_cols=243 Identities=15% Similarity=0.174 Sum_probs=167.2
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~---~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+..+++|+.||++||||. .++..+++.||.++|.+++|.-... .++++|.|.++++|-.+.++..
T Consensus 115 ~~~IltgsYDg~~riWd~---~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~--------- 182 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL---KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK--------- 182 (423)
T ss_pred CceEEEeecCCeeEEEec---CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh---------
Confidence 678899999999999998 4788999999999999888854333 6999999999999965543321
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
...+..-+||+..|-+++..+||.+|++||.|.+|+||+..+ .....++....--. . ... ...+.+.|..
T Consensus 183 -~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rr--k-----~~~-~~~~~~~r~P 252 (423)
T KOG0313|consen 183 -VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRR--K-----KQK-REKEGGTRTP 252 (423)
T ss_pred -hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCC-Cccccccccchhhh--h-----hhh-hhhcccccCc
Confidence 122333459999999999999999999999999999999332 22222321110000 0 000 0000011100
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceee----------------eeecc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLR----------------IALYQ 244 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~----------------~s~~~ 244 (485)
......+..++.++.|++ ...+.++|.|. ||.||+.+|+++-++.... +..++. +-+|.
T Consensus 253 --~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 253 --LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred --eEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecC
Confidence 001124556788999997 55566777765 9999999999887765543 111111 11343
Q ss_pred CCccCcceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 245 GDRSSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+.....+....+-++.+ ....|...++-+|+||+-|+++++|+-|.++
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 333334567777788888 5678898999999999999999999999887
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.84 E-value=6.8e-19 Score=168.46 Aligned_cols=186 Identities=19% Similarity=0.282 Sum_probs=150.9
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+++.++++++.|+.|++||+. +.++...+..|...|.+++|+|++.++++++.|+.|++||+.+.+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------------ 168 (289)
T cd00200 103 PDGRILSSSSRDKTIKVWDVE--TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------------ 168 (289)
T ss_pred CCCCEEEEecCCCeEEEEECC--CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------------
Confidence 346688888789999999997 677888888999999999999999999999889999999987633
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.+..+..|...+.+++|+|+++.+++++.|+.|++||+.+++.+..+..+
T Consensus 169 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---------------------------- 218 (289)
T cd00200 169 --CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH---------------------------- 218 (289)
T ss_pred --cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc----------------------------
Confidence 34446778888999999999999999999999999999998876655221
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011473 183 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
...+.++.|+|+++++++++.++ +++||+.+++++..+..|...+. .++ |.
T Consensus 219 --------~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~--~~~-~~----------------- 270 (289)
T cd00200 219 --------ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLA-WS----------------- 270 (289)
T ss_pred --------CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEE--EEE-EC-----------------
Confidence 11346889999999999998555 99999999998888876653222 111 11
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 262 ANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 262 ~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
+++.+|++++.|+.+++|.
T Consensus 271 --------~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 271 --------PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------CCCCEEEEecCCCeEEecC
Confidence 5667899999999999994
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.9e-20 Score=188.59 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=150.3
Q ss_pred eCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 19 KQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 19 ~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
.+|+ ...+|+|+|.|+|||||++. ..+|+++| .|..-|+||+|+| |.++++|||-|+.||||++-..+
T Consensus 375 lSWS-Kn~fLLSSSMDKTVRLWh~~--~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~------- 443 (712)
T KOG0283|consen 375 LSWS-KNNFLLSSSMDKTVRLWHPG--RKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK------- 443 (712)
T ss_pred cccc-cCCeeEeccccccEEeecCC--CcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------
Confidence 3455 34567788899999999996 78999999 5999999999999 67899999999999999885422
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+..+..-...|++++|+|||+..+.|+-+|.+++|++...+....+.-+.+. +
T Consensus 444 --------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~-------------------~ 496 (712)
T KOG0283|consen 444 --------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN-------------------K 496 (712)
T ss_pred --------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc-------------------C
Confidence 2223333466999999999999999999999999999988876554211100 0
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
+ +.... -++.+.|.|... -|++.|+|. |+|+|..+.+++.+|.|.. +.+-...+-|.
T Consensus 497 K--------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-n~~SQ~~Asfs----------- 555 (712)
T KOG0283|consen 497 K--------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-NTSSQISASFS----------- 555 (712)
T ss_pred c--------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-cCCcceeeeEc-----------
Confidence 0 00111 345777765544 356666665 9999999999999998866 33433334443
Q ss_pred eccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 256 PAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.|+.-|++|++|..||+|....+.
T Consensus 556 --------------~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 556 --------------SDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred --------------cCCCEEEEeecCceEEEEeCCCCc
Confidence 688999999999999999875443
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=2e-19 Score=187.69 Aligned_cols=197 Identities=19% Similarity=0.238 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 011473 8 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~ 87 (485)
.-.+..+..+.. .+.++++|+.|.+|++|+++ ++.+++++.+|.++|.++..+ +.++++++.|++|++||+.
T Consensus 288 ~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~--n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 288 QGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVT--NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred cCCCceEEEEEc----cCceEeeccCCceEEEEecc--CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 334455555544 55678889999999999997 788999998999999999998 7899999999999999998
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccchhHHHhhhcCCC
Q 011473 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~ 166 (485)
+ .++++.+++|...|.++.+.+. .++.+|+.|++|++||+++. +|+.++.+|...+.
T Consensus 360 ~--------------~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~------- 417 (537)
T KOG0274|consen 360 T--------------GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS------- 417 (537)
T ss_pred h--------------ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc-------
Confidence 7 4556669999999999988665 89999999999999999999 99888876554432
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc-CCccceeeeeecc
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV-ENNDRFLRIALYQ 244 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~-~~~~r~~~~s~~~ 244 (485)
. ....+++|++++.++ ||+||..++++++++.+. ...+-++..
T Consensus 418 -----------------------------~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~---- 462 (537)
T KOG0274|consen 418 -----------------------------S--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL---- 462 (537)
T ss_pred -----------------------------c--cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec----
Confidence 1 223678999999998 999999999999999884 222222211
Q ss_pred CCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 245 GDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
. ...+++++.|+++++|+-+..+..
T Consensus 463 -------------------------~-~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 463 -------------------------G-KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred -------------------------C-cceEEEEecCCeeEEEecccCchh
Confidence 1 234789999999999977755444
No 86
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.83 E-value=6.1e-19 Score=196.24 Aligned_cols=189 Identities=14% Similarity=0.194 Sum_probs=147.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCC--CC----cceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARAD--SN----EPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~--~~----~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
++++.++++|+.|++|+|||.... .. .+...+. +...|.+++|+|. +.+|++++.||+|++||+.+
T Consensus 492 s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~------ 564 (793)
T PLN00181 492 DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR------ 564 (793)
T ss_pred CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC------
Confidence 567788999999999999997520 11 1333443 4568999999884 68999999999999999876
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
+..+..+.+|...|++++|+| ++.+|+||+.|++|++||+.+++++.++..+
T Consensus 565 --------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~------------------- 617 (793)
T PLN00181 565 --------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK------------------- 617 (793)
T ss_pred --------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-------------------
Confidence 344556889999999999997 8899999999999999999999987766320
Q ss_pred ccccchhhhhHhhhccCCCCCceEEE-CCCCCEEEEecCCC-eEEEEcccCe-EEEeecccCCccceeeeeeccCCccCc
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIF-DESSNFLIYATLLG-IKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSK 250 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~f-d~~g~~l~~~s~~~-i~v~d~~tg~-~v~~~~~~~~~~r~~~~s~~~~~~~~~ 250 (485)
..+.++.| +++|++|++|+.++ |++||+.+++ .+.++.+|...+..+.+
T Consensus 618 ------------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f---------- 669 (793)
T PLN00181 618 ------------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF---------- 669 (793)
T ss_pred ------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE----------
Confidence 12357788 56899999999987 9999998765 45666677644443333
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 251 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.++..|+|++.|++|++|+-+.
T Consensus 670 -------------------~~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 670 -------------------VDSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred -------------------eCCCEEEEEECCCEEEEEeCCC
Confidence 2345689999999999998754
No 87
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.7e-19 Score=172.10 Aligned_cols=195 Identities=19% Similarity=0.257 Sum_probs=152.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+...++|||+|.+|.||++..+ -.+++..|.||...|-.|+|||.. +.|+|++.|.+|.+|++.|
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t--------- 163 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT--------- 163 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC---------
Confidence 5678999999999999998631 135678899999999999999976 5889999999999999988
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+..+..+. |...|++++|+-||.+|+|.|.|++|||||.++|+++..-..
T Consensus 164 -----geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~------------------------ 213 (472)
T KOG0303|consen 164 -----GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA------------------------ 213 (472)
T ss_pred -----CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc------------------------
Confidence 55566666 999999999999999999999999999999999998754311
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
+....-..+.|=.+|. +.+-|...++.| +++++.....++.+.-.+|
T Consensus 214 -----------heG~k~~Raifl~~g~--------------------i~tTGfsr~seR--q~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 214 -----------HEGAKPARAIFLASGK--------------------IFTTGFSRMSER--QIALWDPNNLEEPIALQEL 260 (472)
T ss_pred -----------ccCCCcceeEEeccCc--------------------eeeecccccccc--ceeccCcccccCcceeEEe
Confidence 1111112333443443 334444555667 6677777667777778888
Q ss_pred ccccc-ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 258 AAANA-NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 258 ~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+.|+. +.+.+++....+.++|.+|+.|+.|--.
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 88888 6678887779999999999999999543
No 88
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.83 E-value=8.1e-20 Score=172.19 Aligned_cols=189 Identities=16% Similarity=0.207 Sum_probs=159.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++..-++.++++|+.|+.||+. ..+.++.+.||-+.|.||+.+|.-+.|+||+.|.++|+||+++
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe--~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt------------- 266 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLE--YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT------------- 266 (460)
T ss_pred cccCceEEEecCCCeeEEEech--hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-------------
Confidence 4556688899999999999997 7788899999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
...++.+.+|+.+|.++.+.|-.-.++|||.|++||+||++.|+-..++..|-
T Consensus 267 -r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk-------------------------- 319 (460)
T KOG0285|consen 267 -RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK-------------------------- 319 (460)
T ss_pred -cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc--------------------------
Confidence 66788899999999999999977788999999999999999999877764322
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
..+.+++..|.-..+++++.+.|+-|++..|..+..+.+|...+. .++.+
T Consensus 320 ----------ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iin--tl~~n------------------ 369 (460)
T KOG0285|consen 320 ----------KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIIN--TLSVN------------------ 369 (460)
T ss_pred ----------ceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceee--eeeec------------------
Confidence 234578889999999999999999999999998888877764333 22222
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 262 ANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 262 ~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.|.. +++|++++.+..|+-+.
T Consensus 370 --------sD~v-~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 370 --------SDGV-LVSGGDNGSIMFWDWKS 390 (460)
T ss_pred --------cCce-EEEcCCceEEEEEecCc
Confidence 4554 57899999999997654
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=1.3e-20 Score=183.75 Aligned_cols=171 Identities=14% Similarity=0.189 Sum_probs=145.3
Q ss_pred cceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011473 48 EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
..++++.||+..|+++.|.| .+.+|+|++.|+.|+||++-. .+.++.+|.+|..+|.+++||++|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------------~~~~lrtf~gH~k~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------------DRRCLRTFKGHRKPVRDASFNNCGT 271 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------------CcceehhhhcchhhhhhhhccccCC
Confidence 46788999999999999999 889999999999999998743 2566777999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCC-CE
Q 011473 127 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS-NF 205 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g-~~ 205 (485)
.|.|+|-|+.|++||++||+|+..+.. .....++.|.|++ +.
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~-------------------------------------~~~~~cvkf~pd~~n~ 314 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHL-------------------------------------DKVPTCVKFHPDNQNI 314 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEec-------------------------------------CCCceeeecCCCCCcE
Confidence 999999999999999999999888732 1133588999999 78
Q ss_pred EEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 011473 206 LIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 284 (485)
Q Consensus 206 l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i 284 (485)
+++|..++ |+.||+.+|++++.++.|-+.+. .+..+ +++..|+|+++|..+
T Consensus 315 fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~--~i~F~--------------------------~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL--DITFV--------------------------DEGRRFISSSDDKSV 366 (503)
T ss_pred EEEecCCCcEEEEeccchHHHHHHHhhhhhee--eeEEc--------------------------cCCceEeeeccCccE
Confidence 88888876 99999999999999988874322 22221 778889999999999
Q ss_pred EEEecCCCCCCC
Q 011473 285 YLFSRREPEEPE 296 (485)
Q Consensus 285 ~~f~~~~~~~~~ 296 (485)
++|..++|-...
T Consensus 367 riWe~~~~v~ik 378 (503)
T KOG0282|consen 367 RIWENRIPVPIK 378 (503)
T ss_pred EEEEcCCCccch
Confidence 999999887663
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=187.98 Aligned_cols=233 Identities=18% Similarity=0.198 Sum_probs=171.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---------
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLIS-KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------- 94 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~-l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--------- 94 (485)
...+++++.|.+|++||.. ++..+.+ +.||.+.|.+++|..-+.+++|||.|.++++||..++++...
T Consensus 218 ~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR 295 (537)
T ss_pred cCeEEecCCCceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE
Confidence 4467888899999999987 6777776 999999999999987788999999999999999998776532
Q ss_pred -----------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH
Q 011473 95 -----------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 157 (485)
Q Consensus 95 -----------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~ 157 (485)
..+|++.++..+..+.+|..+|.++..+ +.++++|+.|++|++||+.+++|++++.+|...
T Consensus 296 ~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 296 CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred EEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 2336666677777777777778777776 677777788888888888888877777554433
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC-eEEEeecccCCcc
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN-KVSRILGKVENND 235 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg-~~v~~~~~~~~~~ 235 (485)
+.++.++.. +.+++|+.++ ||+||+.+. +|+.++.+|.+-+
T Consensus 374 ------------------------------------V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 374 ------------------------------------VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred ------------------------------------EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 346677765 8999999987 999999999 9999999987321
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCccccc
Q 011473 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELL 315 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~ 315 (485)
- .+ .....++.|++.|+.|++|+..+.+-.+ +...| + ...+.
T Consensus 417 ~--~l----------------------------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~-~~~~~----~---~~~v~ 458 (537)
T KOG0274|consen 417 S--SL----------------------------LLRDNFLVSSSADGTIKLWDAEEGECLR-TLEGR----H---VGGVS 458 (537)
T ss_pred c--cc----------------------------ccccceeEeccccccEEEeecccCceee-eeccC----C---cccEE
Confidence 0 01 1456778999999999999776554332 11122 1 11111
Q ss_pred ccccCCCCccCCCCCEEEEEeCCeEEEEE
Q 011473 316 AVSDIGNSVTTSLPDNVILHTTMGDIHMK 344 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~t~~G~i~i~ 344 (485)
... .....++.....|.+.+.
T Consensus 459 ~l~--------~~~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 459 ALA--------LGKEEILCSSDDGSVKLW 479 (537)
T ss_pred Eee--------cCcceEEEEecCCeeEEE
Confidence 111 014567778888888777
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=8.3e-19 Score=159.79 Aligned_cols=227 Identities=16% Similarity=0.151 Sum_probs=169.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---------
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--------- 94 (485)
++-||.|++.|.++.+|=.- +++.+.++.||++.|+|+..+-+.+.++++|.|.++++||.++++....
T Consensus 21 eGDLlFscaKD~~~~vw~s~--nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~ 98 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSL--NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKR 98 (327)
T ss_pred CCcEEEEecCCCCceEEEec--CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEE
Confidence 56689999999999999764 6889999999999999999999999999999999999999999886522
Q ss_pred -----------------------eeEEEEc-------CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011473 95 -----------------------EVSFRLK-------SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 95 -----------------------~~~~~~~-------~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t 144 (485)
.-.|+++ ...+++.+..+.+.++.+-|+|-++++++|..|+.|.+||+++
T Consensus 99 ~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 99 VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 0113333 3455777777888899999999999999999999999999999
Q ss_pred CcEEEEe-ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011473 145 GKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 145 g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
|+.+..- ++|.. .++.+.|+++..|++++|.+. .|+||..+-
T Consensus 179 g~~~v~s~~~h~~------------------------------------~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 179 GKELVDSDEEHSS------------------------------------KINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred Cceeeechhhhcc------------------------------------ccccccccCCcceEEecccCccceeeeccce
Confidence 9764322 22211 346888999999999999987 999999999
Q ss_pred eEEEeecccCCccceeeee------eccCCccCcceeeeeccccc---------------------c-ccCCCCCCCCeE
Q 011473 223 KVSRILGKVENNDRFLRIA------LYQGDRSSKKVRKIPAAAAN---------------------A-NESKEPFSDPTL 274 (485)
Q Consensus 223 ~~v~~~~~~~~~~r~~~~s------~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~d~~l 274 (485)
++++++.-.. ++...+++ +.+|-+....+.+....... . ...-..-||+..
T Consensus 223 ~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 223 EVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred eeEEEeeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 9999997655 44443333 22222222222222111110 0 011113399999
Q ss_pred EEeeecCceEEEEec
Q 011473 275 LCCAFKRHRIYLFSR 289 (485)
Q Consensus 275 ~~s~~~d~~i~~f~~ 289 (485)
++||.+|+.+++.+-
T Consensus 302 YsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHF 316 (327)
T ss_pred cccCCCCceEEEEEe
Confidence 999999999999754
No 92
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=1.2e-18 Score=182.49 Aligned_cols=160 Identities=12% Similarity=0.185 Sum_probs=122.9
Q ss_pred ceEEEEeCCCCeEEEEEcCCCC------CcceEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 25 AGLAISDRNSSFVHIYDARADS------NEPLISKKVHMGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~------~~~~~~l~~h~~~V~~l~fspd~~~-l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+.+++||+.|++|+|||+..+. ..++..+.+|...|.+++|+|++.. |+|++.|++|++||+++++
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~------- 159 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK------- 159 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-------
Confidence 5689999999999999996211 1245678899999999999999875 5799999999999998743
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
.+..+. |...|.+++|+|+|++|++++.|++|+|||+++++++.++..|...+.
T Consensus 160 -------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~------------------ 213 (568)
T PTZ00420 160 -------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN------------------ 213 (568)
T ss_pred -------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce------------------
Confidence 233343 456799999999999999999999999999999999888755332111
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-----CeEEEEccc-CeEEEeecc
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-----GIKIVNLHT-NKVSRILGK 230 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-----~i~v~d~~t-g~~v~~~~~ 230 (485)
...++...|++++++|++++.+ .|+|||+.+ ++.+.++..
T Consensus 214 -------------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 214 -------------TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred -------------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 0011234577899999997765 499999984 666666543
No 93
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1e-19 Score=182.05 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=137.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.|..-+++|+|+|-+|++||.. ..-.+.++++||..-|.+++|+| |.+.++|||-|++|++|.+.+
T Consensus 106 HPt~P~vLtsSDDm~iKlW~we-~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------------ 172 (794)
T KOG0276|consen 106 HPTLPYVLTSSDDMTIKLWDWE-NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------------ 172 (794)
T ss_pred cCCCCeEEecCCccEEEEeecc-CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------------
Confidence 4566688899999999999997 35678999999999999999999 567999999999999998865
Q ss_pred cCCCceEEeecCCccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDG--KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg--~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
..+.+++.+|...|+|+.+-|.| .+|+||+.|.+|+|||.+|.+|++++++|...+
T Consensus 173 --~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv-------------------- 230 (794)
T KOG0276|consen 173 --PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV-------------------- 230 (794)
T ss_pred --CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc--------------------
Confidence 55677799999999999998855 699999999999999999999999998765443
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
+.+.|.|.=..+++||.|| +|||+..|-++..++.-
T Consensus 231 ----------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 231 ----------------SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred ----------------eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence 4788999999999999998 99999998877766643
No 94
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.6e-20 Score=174.72 Aligned_cols=213 Identities=15% Similarity=0.183 Sum_probs=164.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+-+.-.+++|+.||.|++|.+. +++|++.|. .|+..|+|+.||.|+..++|+|.|.++|+.-+.+
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS------------ 337 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS------------ 337 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc------------
Confidence 3456689999999999999998 899999998 9999999999999999999999999999987765
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh-----HHHhhhcCCCcc-------
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE-----VAQDLQRSDAPL------- 168 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~-----~i~~~~~~~~~~------- 168 (485)
+..+.+|++|.+.|+...|++||.+++++|.|++|++|+.+|++|+.+|..... .+--+..++..+
T Consensus 338 --GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 338 --GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred --chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 556666999999999999999999999999999999999999999988832211 111111122111
Q ss_pred --ccc-------ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCcccee
Q 011473 169 --YRL-------EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFL 238 (485)
Q Consensus 169 --~~~-------~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~ 238 (485)
|-+ .++..|+ .+.....+.+.+|-|.++-..+.++ +..+...+|++-+++.-||..+
T Consensus 416 tv~imn~qGQvVrsfsSGk----------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv--- 482 (508)
T KOG0275|consen 416 TVYIMNMQGQVVRSFSSGK----------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV--- 482 (508)
T ss_pred eEEEEeccceEEeeeccCC----------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc---
Confidence 111 1111122 1233345788999999998888888 6888999999999998887211
Q ss_pred eeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 239 RIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
+.+- . -|...++||=++|+.+++|.
T Consensus 483 -IGl~---------------H---------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 -IGLT---------------H---------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccc---------------c---------CcccchhhhhcccchhhhcC
Confidence 1111 1 17777899999999999995
No 95
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=5.6e-19 Score=167.82 Aligned_cols=244 Identities=16% Similarity=0.184 Sum_probs=162.9
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
..+.|+....+ ...+++++.|.++++|..+.+.. +.++.-.||..+|.+|+.++++..++|+|.|.+|++|+.++-
T Consensus 148 k~v~~v~~n~~--~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 148 KSVAWVIKNSS--SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeEEEecCCc--cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 45778766433 34789999999999999873222 223333499999999999999999999999999999983221
Q ss_pred CCC---------CceeE--EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHH
Q 011473 90 QFP---------ESEVS--FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVA 158 (485)
Q Consensus 90 ~~~---------~~~~~--~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i 158 (485)
... +.... =.-...+++..+.+|..+|.++.|++ ...+.++|.|.+|+.||+.+|+++-++...-. +
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-l 303 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-L 303 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc-e
Confidence 100 00000 01123568889999999999999998 66788999999999999999998776633211 1
Q ss_pred HhhhcC----------CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCE-EEEecCCC-eEEEEcccCe-EE
Q 011473 159 QDLQRS----------DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF-LIYATLLG-IKIVNLHTNK-VS 225 (485)
Q Consensus 159 ~~~~~~----------~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~-l~~~s~~~-i~v~d~~tg~-~v 225 (485)
.++... .++..++.+...+.-.++...+. .+...+.++.|+|...| |++++.|+ +|+||+.+-. .+
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 111111 11222222221111001111121 22336789999999885 55677787 9999999876 77
Q ss_pred EeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 226 RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 226 ~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
..+.+|. .+.+...= .++.+|+||+.|+++|+|.-
T Consensus 383 ydI~~h~--DKvl~vdW---------------------------~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 383 YDIAGHN--DKVLSVDW---------------------------NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eeeccCC--ceEEEEec---------------------------cCCceEEeccCcceEEEecc
Confidence 8887775 34332211 46778999999999999954
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=7.8e-19 Score=186.23 Aligned_cols=257 Identities=14% Similarity=0.152 Sum_probs=177.5
Q ss_pred eCCCCcceEEEEeC--CCCeEEEEEcCC---------CC-CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 19 KQGDVKAGLAISDR--NSSFVHIYDARA---------DS-NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 19 ~~~~~~~~l~vs~s--~d~~I~iwd~~~---------~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
.+-+|++..+++|+ .|+.++||.... .. ...+.++..|.+.|+|++|+|||++||+||+|+.|.+|.-
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 34467899999998 899999998642 11 3456777899999999999999999999999999999976
Q ss_pred CCCCCCCceeEEE-------EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 87 HTLQFPESEVSFR-------LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 87 ~t~~~~~~~~~~~-------~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
... .... +|- ...=+....+.+|...|..++|+||+.+||++|.|++|.|||.++.++++++++|...+.
T Consensus 99 ~~~--~~~~-~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK 175 (942)
T KOG0973|consen 99 AEI--GSGT-VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK 175 (942)
T ss_pred ccc--CCcc-cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc
Confidence 531 1000 010 000124566899999999999999999999999999999999999999999999988887
Q ss_pred hhhcCCCcccccccccccchh--------hhhHhhhccCCC-----CCceEEECCCCCEEEEecC-----CCeEEEEccc
Q 011473 160 DLQRSDAPLYRLEAIDFGRRM--------AVEKEIEKTETA-----PPSNAIFDESSNFLIYATL-----LGIKIVNLHT 221 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~--------~~~~~i~~~~~~-----~~~~i~fd~~g~~l~~~s~-----~~i~v~d~~t 221 (485)
.+.++|..-|-.... ..|.+ ..|+.|.++... -...++|||||+||+++-. ..+.|++-.+
T Consensus 176 Gvs~DP~Gky~ASqs-dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 176 GVSWDPIGKYFASQS-DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ceEECCccCeeeeec-CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 777776533321111 11111 123334433221 1246788888888888643 1377887777
Q ss_pred CeEEEeecccCCccceeeee--eccCCccCcceeeeeccccccccCCCCCCC-C-eEEEeeecCceEEEEecCCCCC
Q 011473 222 NKVSRILGKVENNDRFLRIA--LYQGDRSSKKVRKIPAAAANANESKEPFSD-P-TLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 222 g~~v~~~~~~~~~~r~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~-~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
.++-..|-||+.+.+++.|. +|... .+++... .++ . .++|+|+.|+.|-||..-.|+.
T Consensus 255 Wk~~~~LvGH~~p~evvrFnP~lfe~~-~~ng~~~--------------~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 255 WKVDKDLVGHSAPVEVVRFNPKLFERN-NKNGTST--------------QPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred ceeeeeeecCCCceEEEEeChHHhccc-cccCCcc--------------CCCcceEEEEEecCCccEEEEecCCCCc
Confidence 77777777777666666653 44321 1111110 011 1 4789999999999998865543
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=7.9e-20 Score=183.78 Aligned_cols=203 Identities=17% Similarity=0.190 Sum_probs=161.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc----ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNE----PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~----~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
.|.++++.+|+.||.|++|++...... .+.+++.|+..|+.+....+++.|+|||.|-+|++|+.+...
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------- 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------- 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-------
Confidence 456778999999999999998643332 477788999999999999999999999999999999886531
Q ss_pred EEEcCCCceEEeecCCccEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccchhHHHhhhcCCCcccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEV-SPDGKQFSITSPDRRIRVFWFRTGK--LRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~-spdg~~lat~s~D~~I~iwd~~tg~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
.-++..+..|+..|.|+++ -++...+|+||.|+.|.|||+.+|. ++.+++. ...-.+
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~------------~t~~sl--- 166 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN------------VTVNSL--- 166 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc------------cccccC---
Confidence 1345558899999999999 8999999999999999999999883 4433321 000000
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCccee
Q 011473 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
......++-+++-.++|..|++|+..+ +++||..|++-+-.+.||..++|.+.+
T Consensus 167 ------------~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~------------- 221 (735)
T KOG0308|consen 167 ------------GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV------------- 221 (735)
T ss_pred ------------CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE-------------
Confidence 001123445888889998888888776 999999999988888899989995544
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.+|++.++||+.|++|++|+-.+
T Consensus 222 ---------------~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 222 ---------------NDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ---------------cCCCCeEeecCCCceEEeeeccc
Confidence 28999999999999999998754
No 98
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2e-19 Score=172.27 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=156.1
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.++|+.+.+++++.|..+++||+. ++.+.+.++ +|...+.+++|.|||..+++||.|++|..||+..
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~--tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---------- 343 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVD--TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---------- 343 (519)
T ss_pred EECCCCCeEEecCchHheeeccCC--cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc----------
Confidence 347888888888889999999997 788877775 5668899999999999999999999999999863
Q ss_pred EEcCCCceEEeecCC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh--HH----------HhhhcCC
Q 011473 99 RLKSDTNLFEILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE--VA----------QDLQRSD 165 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~-~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~--~i----------~~~~~~~ 165 (485)
..+..+++.. ..|.++++++||+++++.+.|..|++++.++..+...+.++.. .+ ..++.+.
T Consensus 344 -----n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe 418 (519)
T KOG0293|consen 344 -----NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE 418 (519)
T ss_pred -----chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe
Confidence 2222233322 4489999999999999999999999999887665433322211 11 1122222
Q ss_pred CcccccccccccchhhhhHhhhccC-CCCCceEEE-CCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeee
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTE-TAPPSNAIF-DESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIAL 242 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~-~~~~~~i~f-d~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~ 242 (485)
..+ ++.+ .+++. +....+. ..-+-.-+| -.+..|+++||.|+ |.||+-.+|+++.++.||.+.+.++
T Consensus 419 i~L---WDl~-e~~lv--~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV---- 488 (519)
T KOG0293|consen 419 IHL---WDLE-ENKLV--RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV---- 488 (519)
T ss_pred eEE---eecc-hhhHH--HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE----
Confidence 222 2221 11110 0111111 111223345 33558999999987 9999999999999999998444433
Q ss_pred ccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 243 YQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+|++.||.++|||++|++|+||....
T Consensus 489 -----------------------swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 -----------------------SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------------------ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 23458899999999999999998754
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=1.8e-19 Score=167.09 Aligned_cols=199 Identities=13% Similarity=0.195 Sum_probs=153.4
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCC-------------CC---CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARA-------------DS---NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 84 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~-------------~~---~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W 84 (485)
.++++.++++|+.|.+|+|.|++- ++ ...+++|-.|..+|++|.|+|-...|+|++.|++|+++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF 199 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF 199 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE
Confidence 377999999999999999999850 11 23578888999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcC
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 164 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 164 (485)
|...-... +..+.| ....+|.+++|+|.|.+|+.|..-.++|+||+.|-+|.-.-.. +
T Consensus 200 DfsK~saK-----------rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP---------d- 257 (430)
T KOG0640|consen 200 DFSKTSAK-----------RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP---------D- 257 (430)
T ss_pred ecccHHHH-----------HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc---------c-
Confidence 86421110 111112 1335699999999999999999999999999999998533210 0
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeec
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALY 243 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~ 243 (485)
......++++.|+++|++-+++|.+| ||+||-..++|+++++.-.+ ..-+.-+.|
T Consensus 258 -----------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcSa~F 313 (430)
T KOG0640|consen 258 -----------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCSAVF 313 (430)
T ss_pred -----------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-CceeeeEEE
Confidence 11223457899999999999999999 99999999999999975331 122222344
Q ss_pred cCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 244 QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
- .++..|.|...|..+|||.--
T Consensus 314 t-------------------------kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 314 T-------------------------KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred c-------------------------cCCeEEeecCCcceeeeeeec
Confidence 3 688899999999999999553
No 100
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=3.5e-19 Score=178.24 Aligned_cols=196 Identities=16% Similarity=0.308 Sum_probs=141.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+.+|+|.+ +||.|+||.+..+ ..++...|++|...|++++|||- .+.|++++.|-+|++||+++.+.
T Consensus 640 ~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~------ 712 (1012)
T KOG1445|consen 640 DERLAVAT-DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL------ 712 (1012)
T ss_pred hHHeeecc-cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh------
Confidence 45566655 8999999998632 23466778899999999999995 46899999999999999988443
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
-..|.+|+..|.+++|||||+.+||.|.|++||+|..++++.- .+++ ... -|
T Consensus 713 --------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-v~Eg------------------~gp-vg 764 (1012)
T KOG1445|consen 713 --------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-VYEG------------------KGP-VG 764 (1012)
T ss_pred --------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-cccC------------------CCC-cc
Confidence 3348999999999999999999999999999999999887641 1111 000 01
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccC-cceeeee
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSS-KKVRKIP 256 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~-~~~~~~~ 256 (485)
.|- ..|.|--+|+++++. |....+.| ++.+|...... ..+.+.-
T Consensus 765 tRg--------------ARi~wacdgr~viv~-------------------Gfdk~SeR--Qv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 765 TRG--------------ARILWACDGRIVIVV-------------------GFDKSSER--QVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred Ccc--------------eeEEEEecCcEEEEe-------------------cccccchh--hhhhhhhhhccCCcceeee
Confidence 110 134444455555444 44443455 55566554333 3456666
Q ss_pred cccccc-ccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 257 AAAANA-NESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 257 ~~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+++++. +.++++...+.+|+||.+|.+||+|.-
T Consensus 810 lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 810 LDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 777777 778888788999999999999999954
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-17 Score=155.05 Aligned_cols=194 Identities=17% Similarity=0.213 Sum_probs=143.7
Q ss_pred CCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 011473 8 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~ 87 (485)
.|-+...+|.+.+ +..+..|...|.+||.-++. +.+.++.|.||+..|++|+.+|-++.++|+|.|++|++||++
T Consensus 56 kyG~~~~~Fth~~---~~~i~sStk~d~tIryLsl~--dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 56 KYGVDLACFTHHS---NTVIHSSTKEDDTIRYLSLH--DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR 130 (311)
T ss_pred cccccEEEEecCC---ceEEEccCCCCCceEEEEee--cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec
Confidence 3555666666542 33333344458999999997 789999999999999999999999999999999999999998
Q ss_pred CCCCCCc--------------eeEEEEcCCC--------------ceEEee---cCCccEEEEEEcCCCCEEEEEeCCCc
Q 011473 88 TLQFPES--------------EVSFRLKSDT--------------NLFEIL---KSKTTVSAIEVSPDGKQFSITSPDRR 136 (485)
Q Consensus 88 t~~~~~~--------------~~~~~~~~~~--------------~l~~~~---~~~~~v~~i~~spdg~~lat~s~D~~ 136 (485)
+-++..- .+.|....++ +...+. ......+.+.|||||++++.+...+.
T Consensus 131 ~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 131 VKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred CCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 7555421 1223332222 111221 22456789999999999999999999
Q ss_pred EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eE
Q 011473 137 IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IK 215 (485)
Q Consensus 137 I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~ 215 (485)
+++.|.-+|..+.++.+.... ....-+.+|+|+|+|+++|+.+| |+
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~---------------------------------~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNA---------------------------------GNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred EEEEEccCCcEeeeEeeccCC---------------------------------CCcceeEEECCCCcEEEEecCCCcEE
Confidence 999999999988887542111 00113778999999999999988 99
Q ss_pred EEEcccCeEEEeeccc-CCccceee
Q 011473 216 IVNLHTNKVSRILGKV-ENNDRFLR 239 (485)
Q Consensus 216 v~d~~tg~~v~~~~~~-~~~~r~~~ 239 (485)
+|++.+|..+..+.+. -...+++.
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccc
Confidence 9999999999888773 33344333
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=2.1e-18 Score=156.76 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=134.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc--------e
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------E 95 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--------~ 95 (485)
++-++++++.|++|++||++ .+++.+......+.+ .+.|+|+|++++.++.|..|-..|.++++.... -
T Consensus 76 ~~d~~atas~dk~ir~wd~r--~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne 152 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIR--SGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE 152 (313)
T ss_pred CCcceEEecCCceEEEEEec--cCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeee
Confidence 44467778889999999998 788888876554444 578999999999999999999999887665422 1
Q ss_pred eEE-------------------EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh
Q 011473 96 VSF-------------------RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE 156 (485)
Q Consensus 96 ~~~-------------------~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~ 156 (485)
+.| .|..-++++.++.|.+...||.|+|+|++||+|+.|..+.+||+..--|+|.+...
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-- 230 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-- 230 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--
Confidence 111 12334566778899999999999999999999999999999999998888887321
Q ss_pred HHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011473 157 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
.-++..++|+.+|++|++||.+. |-|-+++||.-+..+.-
T Consensus 231 ----------------------------------dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 231 ----------------------------------DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ----------------------------------cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence 12345899999999999999987 89999999998877744
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4e-20 Score=187.79 Aligned_cols=187 Identities=12% Similarity=0.235 Sum_probs=161.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
..+.+++|+.|..+-+|.+. ...++..|.+|.++|.+|.|+++..+|++|+.+|+|++||++..+..
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~--kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v----------- 105 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIG--KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV----------- 105 (825)
T ss_pred cceeeccCCCceeecccccc--CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-----------
Confidence 46789999999999999985 55566778999999999999999999999999999999999875444
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
+.+.+|...+.++.|+|-|.++|+|+.|..+++||.+..-|.++|+.|.+.+
T Consensus 106 ---rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv------------------------- 157 (825)
T KOG0267|consen 106 ---RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV------------------------- 157 (825)
T ss_pred ---hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee-------------------------
Confidence 4489999999999999999999999999999999999888888887654443
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccc
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 262 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~ 262 (485)
..+.|+|+|++++.++.+. +++||...|+++..|..|+..+- .+. |.
T Consensus 158 -----------~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~--sle-~h------------------ 205 (825)
T KOG0267|consen 158 -----------DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ--SLE-FH------------------ 205 (825)
T ss_pred -----------EEEeecCCCceeeccCCcceeeeeccccccccccccccccccc--ccc-cC------------------
Confidence 3788999999999999976 99999999999999998885433 221 11
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 263 NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
|...|+++|+.|..+++|+-+
T Consensus 206 -------p~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 206 -------PLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred -------chhhhhccCCCCceeeeeccc
Confidence 667889999999999999886
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.3e-18 Score=156.61 Aligned_cols=196 Identities=14% Similarity=0.224 Sum_probs=146.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCC-cceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSN-EPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.++.+++++.|++|+|+.++.+.+ .++.+|.||++||.-++|.. -|.+|||||.||.|.||.-++++.
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w--------- 92 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW--------- 92 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch---------
Confidence 467899999999999999984333 67899999999999999965 789999999999999997766532
Q ss_pred cCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC-c-EEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTG-K-LRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg-~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
+..+++..|.+.|++++|.|. |-.||++|.||.|+|.+.++. . ..
T Consensus 93 ---~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---------------------------- 141 (299)
T KOG1332|consen 93 ---TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---------------------------- 141 (299)
T ss_pred ---hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc----------------------------
Confidence 234557889999999999995 678999999999999987653 1 10
Q ss_pred cchhhhhHhhhccCCCCCceEEECCC---C-----------CEEEEecCCC-eEEEEcccCe--EEEeecccCCccceee
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDES---S-----------NFLIYATLLG-IKIVNLHTNK--VSRILGKVENNDRFLR 239 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~---g-----------~~l~~~s~~~-i~v~d~~tg~--~v~~~~~~~~~~r~~~ 239 (485)
..+...+..-+++++|.|. | +-|++|+.|. +|||....++ +-++|.+|.+-+|-++
T Consensus 142 -------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 142 -------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred -------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence 0111223334466777666 5 5688888776 9999987763 4477888886667444
Q ss_pred eeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 240 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+---+ .+. ..|||++.|+++.||+.+
T Consensus 215 waP~~g-----------------------l~~-s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 215 WAPSVG-----------------------LPK-STIASCSQDGTVIIWTKD 241 (299)
T ss_pred hccccC-----------------------CCc-eeeEEecCCCcEEEEEec
Confidence 322111 122 347999999999999987
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.9e-18 Score=157.06 Aligned_cols=225 Identities=16% Similarity=0.184 Sum_probs=159.9
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceE--EEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLI--SKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~--~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.++..+++++.|+++.+|.+. ...... ...+|.+.|.-++|+|. .+++++++.|.+|++||.++++
T Consensus 30 ~~g~~lasgs~dktv~v~n~e--~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k--------- 98 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLE--RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK--------- 98 (313)
T ss_pred ccCceeeecccCCceEEEEec--chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc---------
Confidence 357789999999999999996 333332 34589999999999984 5699999999999999998744
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC-Ccccccccccccc
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD-APLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~g~ 178 (485)
+......... -.-++|||+|.+++.++.|..|.+.|.++-+.+..++.... +.+..++. ..++-+... .|.
T Consensus 99 -----~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~~~nd~Fflt~G-lG~ 170 (313)
T KOG1407|consen 99 -----CTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWNNSNDLFFLTNG-LGC 170 (313)
T ss_pred -----EEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeecCCCCEEEEecC-Cce
Confidence 3333433222 35579999999999999999999999999887665532111 12222221 122222111 011
Q ss_pred hh-----hhh--HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCc
Q 011473 179 RM-----AVE--KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 250 (485)
Q Consensus 179 ~~-----~~~--~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~ 250 (485)
.- +++ ..|+.|. ...-+|.|||+|+|+++|+.+- +-+||+..--|+|.+..++-++|-++||
T Consensus 171 v~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS--------- 240 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS--------- 240 (313)
T ss_pred EEEEeccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec---------
Confidence 00 011 1233332 3346889999999999999997 8999999999999999999888977664
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 251 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
-|+.+|||||+|.-|=|=..+.++.+
T Consensus 241 -------------------~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 241 -------------------HDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred -------------------cCcceeeccCccceEEeEecccCCeE
Confidence 46788999999999988766655544
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=167.41 Aligned_cols=206 Identities=16% Similarity=0.267 Sum_probs=158.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCce------
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE------ 95 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~------ 95 (485)
+++++.+++++.|+.+++|++. ..+..++|.||++.|+++.|......++|++.|.+|++||+....+.+..
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd--~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c 305 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVD--SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQC 305 (459)
T ss_pred cCCCceEEeecCCCceeeeecc--chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccc
Confidence 4566677777899999999997 78899999999999999999887777999999999999999876554331
Q ss_pred -------------------eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh
Q 011473 96 -------------------VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE 156 (485)
Q Consensus 96 -------------------~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~ 156 (485)
=.|+.++....+....+. .|+++..+++|..+.+++.|.++++.|+++....++|...
T Consensus 306 nDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-- 382 (459)
T KOG0288|consen 306 NDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-- 382 (459)
T ss_pred cceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc--
Confidence 115556666666666654 7999999999999999999999999999999988887320
Q ss_pred HHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCcc
Q 011473 157 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENND 235 (485)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~ 235 (485)
|-+. ..-++.+.|||+|.|++.||.+| ++||++.+|+|..++.....+.
T Consensus 383 --------------------g~k~----------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 383 --------------------GFKC----------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred --------------------cccc----------ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 0000 11246789999999999999998 9999999999998886654221
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
- +....|+ +.+.-+++++++..+.+|.
T Consensus 433 a-I~s~~W~-------------------------~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 433 A-ITSLSWN-------------------------PSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred c-eEEEEEc-------------------------CCCchhhcccCCcceEecC
Confidence 1 1111122 4444567888888888883
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-18 Score=173.69 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=177.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++..|+.|..+|.|.|||.. +...++++.+ |...|-+++|+ ...+.+|+.|+.|..+|++..+..
T Consensus 226 s~~G~~LavG~~~g~v~iwD~~--~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-------- 293 (484)
T KOG0305|consen 226 SPDGSHLAVGTSDGTVQIWDVK--EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-------- 293 (484)
T ss_pred CCCCCEEEEeecCCeEEEEehh--hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh--------
Confidence 5677788888899999999997 6777888888 99999999998 678999999999999998763221
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC-------------c
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA-------------P 167 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~-------------~ 167 (485)
...+.+|...|..++|++|+++||+|+.|..+.|||..+...+..+.+|...+.+++|+|- .
T Consensus 294 -----~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 294 -----VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred -----hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 1127889999999999999999999999999999999888888999999999999998774 2
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC---CCeEEEEcccCeEEEeecccCCccceeeeeecc
Q 011473 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL---LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQ 244 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~---~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~ 244 (485)
.++++....|.++. .......+++|.|++..+-|+++-- ..|.||...+-+.+..+.+|. .|.+.+++
T Consensus 369 ~i~fwn~~~g~~i~-----~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~-- 439 (484)
T KOG0305|consen 369 CIKFWNTNTGARID-----SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLAL-- 439 (484)
T ss_pred EEEEEEcCCCcEec-----ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEE--
Confidence 23333333333221 1134456789999999987777532 349999999999999999997 46665554
Q ss_pred CCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 245 GDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.||+..|+||..|.++++|.--.
T Consensus 440 ------------------------SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 440 ------------------------SPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ------------------------CCCCCEEEEecccCcEEeccccC
Confidence 28999999999999999996543
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=7.2e-18 Score=162.71 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=163.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
...+.+|+.|.++.++|.. +.+.+.+|+||...|+.+.|+|+...++++|.|..|++|.......+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~--s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~----------- 297 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKP--SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT----------- 297 (506)
T ss_pred CCcceecCCCCceEEEecc--hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc-----------
Confidence 3467788899999999987 788899999999999999999999999999999999999775533333
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhH
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 184 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (485)
....|..+|+.+..+|.|.||++++.|+++-+.|+++|+++.....
T Consensus 298 ---~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------------------- 343 (506)
T KOG0289|consen 298 ---SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------------------- 343 (506)
T ss_pred ---ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-------------------------------
Confidence 3678999999999999999999999999999999999998765421
Q ss_pred hhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccc
Q 011473 185 EIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 263 (485)
Q Consensus 185 ~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
+.....+.+++|+|||-.+.+|+.++ +|+||+..+..+..+++|+++++-++|+
T Consensus 344 ---~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs---------------------- 398 (506)
T KOG0289|consen 344 ---ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS---------------------- 398 (506)
T ss_pred ---ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec----------------------
Confidence 01223457999999999999999998 8999999999999999999888855551
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 264 ESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 264 ~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.++-+++++.+|..|++|+-|--+
T Consensus 399 ------ENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 399 ------ENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ------cCceEEEEEecCCeEEEEEehhhc
Confidence 568899999999999999988544
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=161.80 Aligned_cols=220 Identities=15% Similarity=0.201 Sum_probs=159.0
Q ss_pred CCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011473 11 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
|..+..+ ..+|.+.+++.|...+.+++|.+. ++.++..+.+|..+|+|+.|+.|+.+|+|+|.||.|.+|++-+.-
T Consensus 81 Pg~v~al--~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHAL--ASSNLGYFLLAGTISGNLYLWELS--SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeee--ecCCCceEEEeecccCcEEEEEec--cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 4444444 346788899988899999999998 899999999999999999999999999999999999999543210
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc
Q 011473 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG--KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg--~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 168 (485)
-. .+-..-.+++.|..|+-+|+++...+.| .+++|+|.|.+||+||+..|.++.++-
T Consensus 157 ~a-----~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---------------- 215 (476)
T KOG0646|consen 157 SA-----DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---------------- 215 (476)
T ss_pred cc-----ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----------------
Confidence 00 0111245788899999999999887754 689999999999999999999887661
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe--EE--EeecccCCccceeeeeec
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK--VS--RILGKVENNDRFLRIALY 243 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~--~v--~~~~~~~~~~r~~~~s~~ 243 (485)
...++.+++.||.++.+-.|+.+| |-+.++++-. -- ..-+.|+.+. ++-.|
T Consensus 216 ---------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t---~~~~~ 271 (476)
T KOG0646|consen 216 ---------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT---QINVL 271 (476)
T ss_pred ---------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc---eeeee
Confidence 112346899999999999999988 6666654321 10 0112222111 12233
Q ss_pred cCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 244 QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.|......+..++.. .|+++++||.+|+.+.+|.-.
T Consensus 272 ~Gh~~~~~ITcLais-----------~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 272 VGHENESAITCLAIS-----------TDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ccccCCcceeEEEEe-----------cCccEEEeeCCCCCEEEEecc
Confidence 332222233333332 899999999999999999764
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=3.1e-18 Score=173.59 Aligned_cols=190 Identities=14% Similarity=0.223 Sum_probs=150.6
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC
Q 011473 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t 88 (485)
|.+..+|+.. .+.-.++.|+.|.+|.+|... ...|+.+|++|++.|.|++...++. ++|+|+|.++++|-.
T Consensus 59 ~i~~~i~y~e----~~~~~l~~g~~D~~i~v~~~~--~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~-- 129 (745)
T KOG0301|consen 59 FIANSICYAE----SDKGRLVVGGMDTTIIVFKLS--QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI-- 129 (745)
T ss_pred eeeccceecc----ccCcceEeecccceEEEEecC--CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--
Confidence 4444455543 134457778899999999986 7899999999999999999877777 999999999999965
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc
Q 011473 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 168 (485)
+...+.+.+|++.|++++.-|++ .++|||.|++||+|.- ++++++|.+|...+.
T Consensus 130 --------------~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR--------- 183 (745)
T KOG0301|consen 130 --------------GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR--------- 183 (745)
T ss_pred --------------hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee---------
Confidence 34455589999999999999998 7799999999999964 888999987665544
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
.+++=+++. +++++.+| |++|++ +|++++.+-+|+.-+..+ +.
T Consensus 184 ---------------------------gL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi--s~----- 227 (745)
T KOG0301|consen 184 ---------------------------GLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI--SM----- 227 (745)
T ss_pred ---------------------------eeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEE--Ee-----
Confidence 555554444 56888888 999999 899999999998322211 11
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
..+..+|+|+++|+++++|...
T Consensus 228 ---------------------~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ---------------------ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ---------------------cCCCCeEEEecCCceEEEeecC
Confidence 1556779999999999999875
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=5e-18 Score=153.29 Aligned_cols=202 Identities=14% Similarity=0.192 Sum_probs=157.7
Q ss_pred cCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 7 LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
......+|.|- .+...+++|+.++.+||||++. ...+...+.+|.+.|..+-|....+.++|++.|++||+||.
T Consensus 99 hkhivk~~af~-----~ds~~lltgg~ekllrvfdln~-p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 99 HKHIVKAVAFS-----QDSNYLLTGGQEKLLRVFDLNR-PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhheeeeEEec-----ccchhhhccchHHHhhhhhccC-CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 34444555553 3456788899999999999973 34567788899999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 166 (485)
+++ +.++.+. -+..|.++.+|+||+++.+ +.-+.|+.||..+-.+++.++-.
T Consensus 173 rTg--------------t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P------------ 224 (334)
T KOG0278|consen 173 RTG--------------TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP------------ 224 (334)
T ss_pred ccC--------------cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc------------
Confidence 884 4444444 2356999999999998655 66788999999998888777431
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee-cccCCccceeeeeecc
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL-GKVENNDRFLRIALYQ 244 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~-~~~~~~~r~~~~s~~~ 244 (485)
..+.+.+.+|+..+++.|..+. +..+|..||+.+..+ .+|-+++-++.+
T Consensus 225 -------------------------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF---- 275 (334)
T KOG0278|consen 225 -------------------------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF---- 275 (334)
T ss_pred -------------------------cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE----
Confidence 1234677899999999999987 999999999988775 555556555544
Q ss_pred CCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 245 GDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.||+-+.||||+|++|+||-..-.++.
T Consensus 276 ------------------------SPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 276 ------------------------SPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ------------------------CCCCceeeccCCCceEEEEEecCCCch
Confidence 289999999999999999966444433
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=5.5e-18 Score=164.63 Aligned_cols=203 Identities=12% Similarity=0.184 Sum_probs=142.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC-----CcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARADS-----NEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~-----~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
..-.++|+++|++|++||+.... ..+...+.+|.+.|..++|+|-. .+++|++.|+.+.|||+++..
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------- 261 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------- 261 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-------
Confidence 34567888899999999997322 23456678999999999999954 589999999999999998521
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-EEEEeccchhHHHhhhcCCCccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
.++.....+|.+.|.|++|+| ++..|||||.|++|++||++..+ +++++.+|-
T Consensus 262 -----~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-------------------- 316 (422)
T KOG0264|consen 262 -----SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-------------------- 316 (422)
T ss_pred -----CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC--------------------
Confidence 333444778999999999999 67788999999999999998744 455554322
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEccc-CeEEEeecccCCccceeeeeeccCCccCcce
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
..+..+.|||.-. .|++++.++ +++||+.. |+..-.-.+.+++.- -+|.-
T Consensus 317 ----------------dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE----llF~H------- 369 (422)
T KOG0264|consen 317 ----------------DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE----LLFIH------- 369 (422)
T ss_pred ----------------cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc----eeEEe-------
Confidence 2345788888876 556666666 99999853 211000000010111 11210
Q ss_pred eeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 253 RKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 253 ~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+++.. .+-.|+..+|-+|||.++|+.+.||.-.
T Consensus 370 -----gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 370 -----GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -----cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 11111 4557777889999999999999999653
No 113
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1e-17 Score=150.19 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=156.4
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCE
Q 011473 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 127 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~ 127 (485)
+.++.|..|+++|.+++|+-||+++++|+.|++|++|++.. +..++++.+|...|..++.+.|...
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--------------g~liktYsghG~EVlD~~~s~Dnsk 73 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--------------GALIKTYSGHGHEVLDAALSSDNSK 73 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc--------------cceeeeecCCCceeeeccccccccc
Confidence 35678889999999999999999999999999999999866 6677779999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEE
Q 011473 128 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 207 (485)
Q Consensus 128 lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~ 207 (485)
||+++.|+.|.+||+.||+.+|.+.+|... ++.+.|.++...++
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq------------------------------------VNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQ------------------------------------VNTVRFNEESSVVA 117 (307)
T ss_pred cccCCCCceEEEEEcccCeeeeecccccce------------------------------------eeEEEecCcceEEE
Confidence 999999999999999999999999764433 35889999999999
Q ss_pred EecCCC-eEEEEcccC--eEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceE
Q 011473 208 YATLLG-IKIVNLHTN--KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRI 284 (485)
Q Consensus 208 ~~s~~~-i~v~d~~tg--~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i 284 (485)
+|+.+. +++||-... +.++++.... .+++++. -....|++||-|+++
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQildea~-----------------D~V~Si~-------------v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDEAK-----------------DGVSSID-------------VAEHEIVAGSVDGTV 167 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhhhc-----------------CceeEEE-------------ecccEEEeeccCCcE
Confidence 999987 999998653 3344443222 2233321 224568999999999
Q ss_pred EEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeEEEEEecCCCCh
Q 011473 285 YLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECP 351 (485)
Q Consensus 285 ~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP 351 (485)
+.|+-|..... -|||....+ ....+....+.+-..++... .|.....-
T Consensus 168 RtydiR~G~l~------sDy~g~pit------------~vs~s~d~nc~La~~l~stl-rLlDk~tG 215 (307)
T KOG0316|consen 168 RTYDIRKGTLS------SDYFGHPIT------------SVSFSKDGNCSLASSLDSTL-RLLDKETG 215 (307)
T ss_pred EEEEeecceee------hhhcCCcce------------eEEecCCCCEEEEeecccee-eecccchh
Confidence 99999977655 567765322 12234445566666666543 34433333
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=4.7e-18 Score=173.48 Aligned_cols=203 Identities=12% Similarity=0.214 Sum_probs=160.2
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC-------C------
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-------L------ 89 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t-------~------ 89 (485)
|..++++.|...|.+.+||+. +...+.+++.|.+.|++++.+||++.++++|.|.+|++||..- .
T Consensus 422 pgd~~Iv~G~k~Gel~vfdla--S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 422 PGDRYIVLGTKNGELQVFDLA--SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred CCCceEEEeccCCceEEEEee--hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 345677777788888888886 5667777889999999999999999999999999999996421 0
Q ss_pred ------CCCCc--ee-------------------EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011473 90 ------QFPES--EV-------------------SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWF 142 (485)
Q Consensus 90 ------~~~~~--~~-------------------~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~ 142 (485)
+++.. ++ +|-+.+-.-...+-||+-+|.|+.+|||++.++|||.|+.|+||-+
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 01100 00 0112222222346799999999999999999999999999999999
Q ss_pred CCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011473 143 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 143 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
.=|.|-+.+-.|. ..+.++.|-|..+++.+++-++ +|-||-..
T Consensus 580 dFGDCHKS~fAHd------------------------------------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 580 DFGDCHKSFFAHD------------------------------------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred ccchhhhhhhccc------------------------------------CceeEEEEcccceeEEEecCcceEEeechhh
Confidence 9999976663322 2346899999999999999987 99999999
Q ss_pred CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 222 NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 222 g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
-++++++.+|...+|++++ .|++.+++|++.|..|++|.+..
T Consensus 624 Fe~iq~L~~H~~ev~cLav----------------------------~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 FEEIQKLDGHHSEVWCLAV----------------------------SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhheeeccchheeeeeEE----------------------------cCCCCeEEeccCCceeEeeeccC
Confidence 9999999999867775544 17888999999999999998854
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.9e-19 Score=178.47 Aligned_cols=167 Identities=14% Similarity=0.202 Sum_probs=141.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++...++++|+.+|+|++||+. ....+++|.+|...+.+|.|+|-+.+.+++|.|+.+++||.+-
T Consensus 79 ~~~E~LlaagsasgtiK~wDle--eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk------------- 143 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLE--EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK------------- 143 (825)
T ss_pred CcchhhhcccccCCceeeeehh--hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-------------
Confidence 4567788899999999999997 7888999999999999999999999999999999999999864
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
..+.+.+.+|...|.++.|+|||+++++++.|.+++|||...|+.+..|..|..
T Consensus 144 -~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~------------------------- 197 (825)
T KOG0267|consen 144 -KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG------------------------- 197 (825)
T ss_pred -cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-------------------------
Confidence 456777889999999999999999999999999999999999999888753221
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeee
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI 240 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~ 240 (485)
.+.++.|+|..-+|+.|+.+. +++||++|-+++-..+.....+|.+.+
T Consensus 198 -----------~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 198 -----------KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAF 246 (825)
T ss_pred -----------cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeee
Confidence 224667888888889999987 999999998887666555444554443
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=6.4e-18 Score=170.16 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=140.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEcCCCCC--CCCceeEEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRY-NPVFDTVISADDKGIIEYWSPHTLQ--FPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~f-spd~~~l~s~s~dg~i~~Wd~~t~~--~~~~~~~~~~ 100 (485)
++..++|+|.|-+|++|+...+..-++.++..|+..|.||++ -++..++|||+-|+.|.+||++++. .... |+-
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s---~n~ 160 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS---FNN 160 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh---ccc
Confidence 456899999999999999973333688889999999999999 8889999999999999999998762 2111 111
Q ss_pred cCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 101 KSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 101 ~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
. ....+. +++..|+++|-+|.|..|++|+..+.+|+||.++++.+..+.+|...+
T Consensus 161 ~---t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNV--------------------- 216 (735)
T KOG0308|consen 161 V---TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNV--------------------- 216 (735)
T ss_pred c---ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccce---------------------
Confidence 1 111233 889999999999999999999999999999999999877776644333
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
..+..++||+.++++|.++ |++||+..-+|+.++.-|+..+.
T Consensus 217 ---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 217 ---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred ---------------EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 3667889999999999998 99999999999999999885544
No 117
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-17 Score=149.92 Aligned_cols=195 Identities=17% Similarity=0.170 Sum_probs=139.5
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe
Q 011473 53 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 53 l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s 132 (485)
|.||..|++-+.|+.+|++|.||+.|.+..+|-..+ +..|-++.+|++.|+||+.+-+.++++||+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--------------GerlGty~GHtGavW~~Did~~s~~liTGS 71 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--------------GERLGTYDGHTGAVWCCDIDWDSKHLITGS 71 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC--------------CceeeeecCCCceEEEEEecCCcceeeecc
Confidence 579999999999999999999999999999996555 455556999999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc--cccc--------------hhhhhH---hhhccCCCC
Q 011473 133 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI--DFGR--------------RMAVEK---EIEKTETAP 193 (485)
Q Consensus 133 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~g~--------------~~~~~~---~i~~~~~~~ 193 (485)
.|.++++||+++||++.+++-.. ++..+.++...-+.+-.. ..|. ....+. .+..++ ..
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-sk 149 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SK 149 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cc
Confidence 99999999999999988874321 112222222111111000 0000 000010 011111 23
Q ss_pred CceEEECCCCCEEEEecCCC-eEEEEcccCe-EEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCC
Q 011473 194 PSNAIFDESSNFLIYATLLG-IKIVNLHTNK-VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD 271 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~-~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 271 (485)
..++.|+|.|++|++|-.+| |.+||+.+|+ ++.....|...+.-+++ .+|
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~----------------------------s~d 201 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF----------------------------SRD 201 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc----------------------------cCC
Confidence 46788999999999999988 9999999985 44555555532221111 289
Q ss_pred CeEEEeeecCceEEEEecCC
Q 011473 272 PTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~ 291 (485)
-+.|+||+.|.+-++|+-+.
T Consensus 202 ~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cceEEecccCccceeeeccc
Confidence 99999999999999998764
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=6.8e-18 Score=172.96 Aligned_cols=157 Identities=11% Similarity=0.230 Sum_probs=121.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+++|||.||+|++||++ ...-..++.+....|..|+|+| .+..++++...|.+++||++..
T Consensus 145 ep~iliSGSQDg~vK~~DlR--~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp------------- 209 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLR--SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP------------- 209 (839)
T ss_pred CccEEEecCCCceEEEEeee--cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc-------------
Confidence 67799999999999999998 5566777888999999999999 5679999999999999999642
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..+...+..|.++|.|+.|+|++.+|||||.|++|+|||+.+++. +.++
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI----------------------------- 260 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI----------------------------- 260 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-----------------------------
Confidence 345555889999999999999999999999999999999987654 2222
Q ss_pred hhhHhhhccCCCCCceEEECCCCC-EEEEecC--C-CeEEEEcccC-eEEEeecccC
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSN-FLIYATL--L-GIKIVNLHTN-KVSRILGKVE 232 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~--~-~i~v~d~~tg-~~v~~~~~~~ 232 (485)
+...++..+.|=|.-+ .|+++++ + .|+|||+..- -..+++..|.
T Consensus 261 --------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 261 --------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred --------eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 1223455677777666 4555555 2 4999998632 2224454444
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=5.5e-17 Score=150.32 Aligned_cols=228 Identities=14% Similarity=0.118 Sum_probs=145.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcce-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPL-ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~-~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
...+++.+|.|++||+|+++. ++..+ +....|.+||.+++|+.||..+++++.|+.+++||+.+++
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~-~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------------ 105 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQN-SGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------------ 105 (347)
T ss_pred cCceEEecccCCceEEEEEec-CCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------------
Confidence 455677888999999999973 23322 3445799999999999999999999999999999998754
Q ss_pred CCceEEeecCCccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEeccchhHHH----------hhhcCCCcccc
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGK--QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ----------DLQRSDAPLYR 170 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~--~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~----------~~~~~~~~~~~ 170 (485)
+..+..|.++|.++.|=+... .|+|||.|++||.||++..+.+.+++-..+.+. ..+.....+|.
T Consensus 106 ---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 106 ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred ---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 334778999999999987665 899999999999999999998887754433221 12233334454
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE--EeecccCCccceeeeeeccCCc
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS--RILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v--~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
|...- ...+.+..+..-...+|+--++..-.+.|+-.| +-+-++..+... .++.=|....- +.=.+|.
T Consensus 183 L~n~~-----te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYa--- 253 (347)
T KOG0647|consen 183 LENPP-----TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYA--- 253 (347)
T ss_pred cCCCc-----chhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEE---
Confidence 43210 011223333333445665444444447777766 666666554211 12211210000 0000111
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+..+ ... |--..|+|+..|++|-.|++..
T Consensus 254 ----VNsi----------~Fh-P~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 254 ----VNSI----------AFH-PVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred ----ecce----------Eee-cccceEEEecCCceEEEecchh
Confidence 1111 111 5556689999999999998853
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.7e-17 Score=154.28 Aligned_cols=203 Identities=13% Similarity=0.193 Sum_probs=152.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC-CCCCCCc------
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TLQFPES------ 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~-t~~~~~~------ 94 (485)
+..+.++.++|.|.+.+||.++ ++.|+.++.||.+.|++++|++.+.+++++|.|++..||... ..+.|..
T Consensus 157 ~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 157 DSTQPICGTASADHTARIWSLE--SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred hcCCcceeecccccceeEEeec--cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 3344588899999999999997 899999999999999999999999999999999999999411 1222211
Q ss_pred ----eeE-------E---EEcC-----CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccch
Q 011473 95 ----EVS-------F---RLKS-----DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL 155 (485)
Q Consensus 95 ----~~~-------~---~~~~-----~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~ 155 (485)
-.. + +.+. ..++..|.+|.+.|.++.|-..|+.++++|.|++..+||+++|+.+..+.+|.
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc
Confidence 000 0 0111 23567789999999999999999999999999999999999999998887654
Q ss_pred hHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc-CeEEEeecccCC
Q 011473 156 EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT-NKVSRILGKVEN 233 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~ 233 (485)
..+ ..++-.|+.++++++|.+. .++||... =.-+.++.||..
T Consensus 315 ~EL------------------------------------tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 315 SEL------------------------------------THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred hhc------------------------------------cccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 433 2455678899999999887 89999862 123344444442
Q ss_pred ccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 234 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 234 ~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.+ .-++|. .|. -++||++|.+|++|.-+.
T Consensus 359 tV---TS~vF~-------------------------~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 359 TV---TSVVFN-------------------------TDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ce---eEEEEe-------------------------cCC-ceeecCCCceEEEeeecc
Confidence 21 222332 222 268999999999998764
No 121
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.75 E-value=4.6e-17 Score=154.23 Aligned_cols=167 Identities=14% Similarity=0.209 Sum_probs=140.7
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCE
Q 011473 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 127 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~ 127 (485)
..+.+|..|+.+|.+++.+|+.++++||+.|....+|+..+++ .+..+.+|+..|+++.||.||.+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------------~~~eltgHKDSVt~~~Fshdgtl 120 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------------FAGELTGHKDSVTCCSFSHDGTL 120 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------ceeEecCCCCceEEEEEccCceE
Confidence 3478899999999999999999999999999999999998854 44559999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEE
Q 011473 128 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 207 (485)
Q Consensus 128 lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~ 207 (485)
||||..+|.|+||+..+|...+.+++...- +.=+.|+|-+++|+
T Consensus 121 LATGdmsG~v~v~~~stg~~~~~~~~e~~d------------------------------------ieWl~WHp~a~ill 164 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKVSTGGEQWKLDQEVED------------------------------------IEWLKWHPRAHILL 164 (399)
T ss_pred EEecCCCccEEEEEcccCceEEEeecccCc------------------------------------eEEEEecccccEEE
Confidence 999999999999999999998888531111 12367999999999
Q ss_pred EecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 011473 208 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 286 (485)
Q Consensus 208 ~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~ 286 (485)
.|+.+| +=.|.+..+...+++.||..+.. ...| .||+..+++++.|++|++
T Consensus 165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct---~G~f-------------------------~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCT---CGEF-------------------------IPDGKRILTGYDDGTIIV 216 (399)
T ss_pred eecCCCcEEEEECCCcceeeEecCCCCCcc---cccc-------------------------cCCCceEEEEecCceEEE
Confidence 999998 89999998888899988863222 1111 288999999999999999
Q ss_pred EecCCC
Q 011473 287 FSRREP 292 (485)
Q Consensus 287 f~~~~~ 292 (485)
|+....
T Consensus 217 Wn~ktg 222 (399)
T KOG0296|consen 217 WNPKTG 222 (399)
T ss_pred EecCCC
Confidence 988654
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.75 E-value=3.5e-17 Score=166.03 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=146.3
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
..+|.++... ++. ++|||.|.++++|-. +++..++++|..+|+++++-|++ .++|||.|++|++|..
T Consensus 102 snVC~ls~~~--~~~-~iSgSWD~TakvW~~----~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~----- 168 (745)
T KOG0301|consen 102 SNVCSLSIGE--DGT-LISGSWDSTAKVWRI----GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG----- 168 (745)
T ss_pred cceeeeecCC--cCc-eEecccccceEEecc----hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-----
Confidence 3345554432 233 899999999999975 46777899999999999999988 8999999999999965
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
++.+..|.+|..-|..+++-|++. |++++.||.||+|++ +|.+++.+.+|...+
T Consensus 169 -----------~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v------------- 222 (745)
T KOG0301|consen 169 -----------GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV------------- 222 (745)
T ss_pred -----------CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEE-------------
Confidence 456667999999999999998864 689999999999998 899998886655433
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCc
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 250 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~ 250 (485)
-+++..+++..+++++.++ +++|+.. +|++.+.....++. ...+...
T Consensus 223 -----------------------Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW--sa~~L~N----- 270 (745)
T KOG0301|consen 223 -----------------------YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIW--SAKVLLN----- 270 (745)
T ss_pred -----------------------EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceE--EEEEeeC-----
Confidence 2666777889999999987 9999986 88888766542222 2222210
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 251 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.| |++|+.|++||+|+..
T Consensus 271 -------------------gD---Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 271 -------------------GD---IVVGGSDGRVRVFTVD 288 (745)
T ss_pred -------------------CC---EEEeccCceEEEEEec
Confidence 12 7899999999999986
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.74 E-value=4.7e-17 Score=159.98 Aligned_cols=201 Identities=13% Similarity=0.111 Sum_probs=141.4
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
.|.||... +...+++++.|+++||||+. .....+..++ +.+-+|++++|+||+.+||+|-.||.|++|+.
T Consensus 272 t~g~whP~----~k~~FlT~s~DgtlRiWdv~-~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 272 TCGCWHPD----NKEEFLTCSYDGTLRIWDVN-NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred eccccccC----cccceEEecCCCcEEEEecC-CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 45667544 33456677899999999997 2344455554 45668999999999999999999999999997
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccchhHHHhhhc
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKT--TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQR 163 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~ 163 (485)
...... ...+.-..|.. .++||+||+||++|++-|.|.++++||++..+ ++.+..+
T Consensus 347 ~~~~v~-----------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg---------- 405 (641)
T KOG0772|consen 347 GSRTVR-----------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG---------- 405 (641)
T ss_pred CCcccc-----------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC----------
Confidence 442111 11222345655 79999999999999999999999999998654 3322211
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC------C-eEEEEcccCeEEEeecccCCccc
Q 011473 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL------G-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~------~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
.........++|||+.++|++|+.. + +.++|..|-+.+.++.-...
T Consensus 406 ------------------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--- 458 (641)
T KOG0772|consen 406 ------------------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--- 458 (641)
T ss_pred ------------------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc---
Confidence 0111233578999999999999752 4 78999999999988876542
Q ss_pred eeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 237 FLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+...+|.. .-.-|.-|++|+.+|++...
T Consensus 459 Svv~~~Whp-------------------------kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 459 SVVRCLWHP-------------------------KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eEEEEeecc-------------------------hhhheeeecCCCceEEEECc
Confidence 223344442 11124557788999999775
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=1.3e-16 Score=169.45 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=174.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCC----------------CCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARA----------------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 84 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~----------------~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W 84 (485)
+++++.++++||+|+.|.||+-.. +.-+....|.+|.+.|..++|+|++.+++|+|.|++|.+|
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 367999999999999999998751 0112567788999999999999999999999999999999
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh------HH
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE------VA 158 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~------~i 158 (485)
+..+++.. ..+.+|.+.|-.++|.|-|++||+-+.|++|+||++.+-.+.+++.++.. .+
T Consensus 157 n~~tF~~~--------------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 157 NAKTFELL--------------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ccccceee--------------eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 99886544 44999999999999999999999999999999999888778888866644 34
Q ss_pred HhhhcCCCcccccccc--cccchhh---------hhHhhhccCCCCCceEEECCC------C---------C--EEEEec
Q 011473 159 QDLQRSDAPLYRLEAI--DFGRRMA---------VEKEIEKTETAPPSNAIFDES------S---------N--FLIYAT 210 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~g~~~~---------~~~~i~~~~~~~~~~i~fd~~------g---------~--~l~~~s 210 (485)
..+.|+|++-|-.... ..+...+ .+..+-.|.. ++..+.|.|. . . .+|+|+
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 4566777644332211 1111110 1122222333 5567777652 1 1 466677
Q ss_pred CCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 211 LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 211 ~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.|+ |-||....-+.+ |++.-+|+. .-.+..|. ||+..|.-.|-|+.|++++-
T Consensus 302 qDrSlSVW~T~~~RPl-----------~vi~~lf~~---------------SI~DmsWs-pdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPL-----------FVIHNLFNK---------------SIVDMSWS-PDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred CCccEEEEecCCCCch-----------hhhhhhhcC---------------ceeeeeEc-CCCCeEEEEecCCeEEEEEc
Confidence 776 888887544432 333344442 11455666 88888888899999999988
Q ss_pred CCCCC---C---CccCCCccccCCCCCccccc
Q 011473 290 REPEE---P---EDATKGRDIFNEKPPPDELL 315 (485)
Q Consensus 290 ~~~~~---~---~~~~~~rd~~n~~p~~e~~~ 315 (485)
++.+. . |.....+-+|+..++.-+.+
T Consensus 355 ee~ElG~~ls~ee~~~~~l~~yg~~~~~le~p 386 (942)
T KOG0973|consen 355 EEKELGVALSEEEISELDLSRYGKSRPKLELP 386 (942)
T ss_pred chHHhCcccChhhhchhhHHHhcCCchhhcCC
Confidence 66321 1 11112456677766433333
No 125
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=4.8e-18 Score=163.01 Aligned_cols=226 Identities=10% Similarity=0.148 Sum_probs=166.1
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCc
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 105 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~ 105 (485)
-.+++|+.|..|++|++..+..+.+.+|.|..++|+++.|.+++..+++++.|+.+++|+....+.
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~-------------- 253 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL-------------- 253 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh--------------
Confidence 367788889999999997545567888999999999999999999999999999999999887444
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccch--h-----HHHhhhcCCCcccccccccccc
Q 011473 106 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL--E-----VAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~--~-----~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+.+|.+|+..|+++.|......+++|+.|.+|++||+..+.|.+++-..- . ....+..+.+...++++.-.+.
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~ 333 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD 333 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCc
Confidence 44499999999999999988889999999999999999999988761110 0 1111122222223333320000
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCc-cceeeeeeccCCccCcceeeee
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENN-DRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~-~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
..........+.++..+++|.-|++++.+ .++++|+.+.++.+++....-. .--+..++|.
T Consensus 334 -----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS------------ 396 (459)
T KOG0288|consen 334 -----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS------------ 396 (459)
T ss_pred -----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC------------
Confidence 00111222356799999999999999876 5999999999998887542100 0012345554
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
||+..+|+|+.|+++|||+....|..
T Consensus 397 -------------pd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 397 -------------PDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred -------------CCCceeeeccCCCcEEEEEccCceEE
Confidence 99999999999999999998765544
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=2e-16 Score=146.06 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=156.1
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCC--------cceEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCC
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSN--------EPLISK-----KVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~--------~~~~~l-----~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t 88 (485)
..+++++||+.||.|.+||++..+. +.+..+ .+|+-.|.++.|=| |..++.|+|.|.++++||..|
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 3688999999999999999973220 011111 27999999999999 566999999999999999987
Q ss_pred CCCC------Cc------------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCE-EEEEeCCCcE
Q 011473 89 LQFP------ES------------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ-FSITSPDRRI 137 (485)
Q Consensus 89 ~~~~------~~------------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~-lat~s~D~~I 137 (485)
.+.. .. .-.++++++...+.+.+|...|.++.|||...+ |||||.|+.|
T Consensus 134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 5432 11 111567788888999999999999999998765 6899999999
Q ss_pred EEEECCCC-cEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeE
Q 011473 138 RVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIK 215 (485)
Q Consensus 138 ~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~ 215 (485)
|+||++.. -|.+++|.|.... .|. ... .......++.++|+.+|.+|++++.+ .++
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~-----~p~--~~~---------------n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKR-----PPI--LKT---------------NTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeecccceeEEeecccCcc-----Ccc--ccc---------------cccccceeeeeeecccchhhhhccCccceE
Confidence 99999875 7888988765310 000 000 01123345799999999999998776 499
Q ss_pred EEEcccCeE-EEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 216 IVNLHTNKV-SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 216 v~d~~tg~~-v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+|+...|+- ++.++.--.+.+ ...++....|.+..-...+. .++.-+.+..+-.+|++|+-.
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~-----------~~~~~~~~~~~s~vfv~~p~--~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQT-----------TSFAVHIQSMDSDVFVLFPN--DGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred EeecccCccccccccccccccc-----------ccceEEEeecccceEEEEec--CCeEEEEEccCceEEEeeecc
Confidence 999998863 233322110101 00011111111111111111 256667888888889988665
No 127
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=4.3e-16 Score=159.30 Aligned_cols=210 Identities=12% Similarity=0.124 Sum_probs=154.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+.+..+++||+ .++|+||+.. +.++++++... .+.+..|-|.++++++|...|.+.++|+.+..+
T Consensus 382 S~d~~~~~Sga-~~SikiWn~~--t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l---------- 446 (888)
T KOG0306|consen 382 SSDSILLASGA-GESIKIWNRD--TLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL---------- 446 (888)
T ss_pred ecCceeeeecC-CCcEEEEEcc--CcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh----------
Confidence 34556677764 5789999997 88999999643 789999999999999999999999999876433
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+...+.|.+.+++++.+||++.++|||.|.+|++||+.- +....++.+ +++.
T Consensus 447 ----~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l---~~~~~gt~~---------------------k~ls 498 (888)
T KOG0306|consen 447 ----VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL---VVSVPGTQK---------------------KVLS 498 (888)
T ss_pred ----hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE---EeccCcccc---------------------eeee
Confidence 333778999999999999999999999999999999741 111111000 0000
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
+...-.-.-...+.++++||||+||+.+=.+. ++++.+.|-+..-.+-||.-+++++.+
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI-------------------- 558 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI-------------------- 558 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec--------------------
Confidence 00000001122346899999999999998876 999999988876666677655554333
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCC
Q 011473 261 NANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEK 308 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~ 308 (485)
.+|+.+++|||.|..+++|.-.=+ .|++-+|...
T Consensus 559 --------S~DSklivTgSADKnVKiWGLdFG------DCHKS~fAHd 592 (888)
T KOG0306|consen 559 --------SPDSKLIVTGSADKNVKIWGLDFG------DCHKSFFAHD 592 (888)
T ss_pred --------cCCcCeEEeccCCCceEEeccccc------hhhhhhhccc
Confidence 289999999999999999976433 2567777753
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.6e-15 Score=135.32 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=152.3
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCc---ceEEEecCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEcCCCCCCC
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNE---PLISKKVHMGPVKVMRYNPV----FDTVISAD-DKGIIEYWSPHTLQFP 92 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~fspd----~~~l~s~s-~dg~i~~Wd~~t~~~~ 92 (485)
++|.+.++++||+|++|++..++.++.+ +-..|..|.+.|..++|-.+ +.+|+|++ .|..|.+-|-.+
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~---- 172 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR---- 172 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC----
Confidence 4788999999999999999877633322 22356689999999999654 44777766 455555556655
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
++.++.+.+|++.+.++ ++=+|-+||+||.|.+||+||++-..|+++++.....
T Consensus 173 ----------g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~--------------- 226 (350)
T KOG0641|consen 173 ----------GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD--------------- 226 (350)
T ss_pred ----------CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC---------------
Confidence 66777799999988775 3447999999999999999999999999988541100
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011473 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
|. -+...+.+++.||+|++|++|-.+. ..++|+..|+.++.+-.|...+|++.||
T Consensus 227 ----~g----------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs---------- 282 (350)
T KOG0641|consen 227 ----GG----------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---------- 282 (350)
T ss_pred ----CC----------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----------
Confidence 00 0112346889999999999999886 8999999999999999998888987772
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
|..-.+.|++-|..|++=+-+-
T Consensus 283 ------------------p~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 283 ------------------PGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred ------------------CCceEEEEecccceEEEeeccc
Confidence 5556678888888888875543
No 129
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=9.6e-16 Score=150.25 Aligned_cols=183 Identities=15% Similarity=0.204 Sum_probs=141.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+.+++++|++|+.+++||+. +......+.+|+..|.|.+|+|... +++|||.||.||+||+++-
T Consensus 122 d~t~l~s~sDd~v~k~~d~s--~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~------------- 186 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLS--TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL------------- 186 (487)
T ss_pred CCeEEEecCCCceEEEEEcC--CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-------------
Confidence 67899999999999999997 5555568889999999999999755 8999999999999999762
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
...+.++ .|..+|.++.+-|.|..+|+++ ...|||||+.+|..+-...
T Consensus 187 ~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~------------------------------ 234 (487)
T KOG0310|consen 187 TSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM------------------------------ 234 (487)
T ss_pred CceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh------------------------------
Confidence 1333344 4778999999999999999977 4579999999765431110
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011473 183 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
.++.-+++++.+..+++-|++++.|+ +|++|+.+-++++.++... -.+.++++
T Consensus 235 -----~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs------------------ 288 (487)
T KOG0310|consen 235 -----FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVS------------------ 288 (487)
T ss_pred -----hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEec------------------
Confidence 11223457999999999999999998 9999988888888776544 24444443
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEE
Q 011473 262 ANESKEPFSDPTLLCCAFKRHRIYLF 287 (485)
Q Consensus 262 ~~~~~~~~~d~~l~~s~~~d~~i~~f 287 (485)
||...++-|..++-+-+=
T Consensus 289 --------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 289 --------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred --------CCCceEEEecccceeeee
Confidence 555666777777766555
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=146.89 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=124.0
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc----------------------eeEEEEcCCCceEE
Q 011473 51 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----------------------EVSFRLKSDTNLFE 108 (485)
Q Consensus 51 ~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~----------------------~~~~~~~~~~~l~~ 108 (485)
.+|++|.+.|++++|+.||+.|+|++.|++|++|+++.+..... .+++.++.+..|+.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 45779999999999999999999999999999998876543210 11122222222221
Q ss_pred -----------------------eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011473 109 -----------------------ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 109 -----------------------~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
-++|+..+..+-..-.++++++++.|.+|.|||++ |+.+.+++...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---------- 228 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---------- 228 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc----------
Confidence 13566778888888899999999999999999998 99988875411
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc---CeE---E--EeecccCCccc
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT---NKV---S--RILGKVENNDR 236 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t---g~~---v--~~~~~~~~~~r 236 (485)
......+.||+|+||++++..- +++|.+.- |+. . ..|.||+
T Consensus 229 --------------------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~---- 278 (420)
T KOG2096|consen 229 --------------------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ---- 278 (420)
T ss_pred --------------------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch----
Confidence 1123567899999999998865 99998642 211 1 1123333
Q ss_pred eeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 237 FLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
..+...++ .+++..++|.|+|+++++|+.
T Consensus 279 -------------saV~~~aF-----------sn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 279 -------------SAVLAAAF-----------SNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred -------------hheeeeee-----------CCCcceeEEEecCCcEEEeec
Confidence 11222211 278889999999999999976
No 131
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.71 E-value=4.3e-17 Score=147.32 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=160.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
-|++.+|+|++.|+.-.+=+-. ++.-+.+|.||++.|++...+.+....+|++.|=+.++||.-++.
T Consensus 26 tp~g~flisa~kd~~pmlr~g~--tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd----------- 92 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGD--TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD----------- 92 (334)
T ss_pred CCCceEEEEeccCCCchhccCC--CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh-----------
Confidence 5789999999999988876654 788899999999999999999999999999999999999987743
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.++.|. |+..|.+++|+.|.++|+||+.++.+||||+...+. ...+.+|.
T Consensus 93 ---elhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght------------------------- 143 (334)
T KOG0278|consen 93 ---ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT------------------------- 143 (334)
T ss_pred ---hhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-------------------------
Confidence 444454 788899999999999999999999999999875442 11222211
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCcc---------ceeeeeeccC-----
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENND---------RFLRIALYQG----- 245 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~---------r~~~~s~~~~----- 245 (485)
..+..+.|....+.|++++.++ ||+||..||+.++++.... ++ |++..+ |++
T Consensus 144 -----------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTia-~gssV~Fw 210 (334)
T KOG0278|consen 144 -----------GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTIA-YGSSVKFW 210 (334)
T ss_pred -----------CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEEe-cCceeEEe
Confidence 2234778988999999988876 9999999999999997643 22 333322 111
Q ss_pred CccCcc-eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 246 DRSSKK-VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+..-+ +...+| --|.......|+.-++++|.+|..+|-|+-...+
T Consensus 211 daksf~~lKs~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 211 DAKSFGLLKSYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ccccccceeeccC--ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 011111 111111 1223445566888999999999999999875444
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.1e-16 Score=143.30 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=141.8
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc--------
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-------- 94 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~-------- 94 (485)
+-+.+++.|..||.|-|||+. +...-+.|.+|..||++++||+||+.|+|+|.|..|.+||+..+.+.+.
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~ 110 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW 110 (405)
T ss_pred cCcceeeeeccCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc
Confidence 456688888899999999997 7777788999999999999999999999999999999999988775432
Q ss_pred -----------eeEEEEcCCCceEEeec--CC-----------ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011473 95 -----------EVSFRLKSDTNLFEILK--SK-----------TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 95 -----------~~~~~~~~~~~l~~~~~--~~-----------~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
.++..++...-+..+.. |+ ....+..|.+.|+++.+|...|.+-++|..|-+|+..
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 01111111111112211 10 1122345889999999999999999999999999887
Q ss_pred eccch-hHHHhhhcCC-------------Ccccccccc-cccchhhhh--Hhhhc-cCCCCCceEEECCCCCEEEEecCC
Q 011473 151 YDESL-EVAQDLQRSD-------------APLYRLEAI-DFGRRMAVE--KEIEK-TETAPPSNAIFDESSNFLIYATLL 212 (485)
Q Consensus 151 ~~~~~-~~i~~~~~~~-------------~~~~~~~~~-~~g~~~~~~--~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~ 212 (485)
+.-.. ..|..+..+. +..|..... ..||-...| ..++. -....+.+++||.+|.|+..+|..
T Consensus 191 ~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~ 270 (405)
T KOG1273|consen 191 FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR 270 (405)
T ss_pred eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccc
Confidence 74333 2222221111 122222211 112222222 12222 234567899999999999999864
Q ss_pred --CeEEEEcccCeEEEeecccC
Q 011473 213 --GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 213 --~i~v~d~~tg~~v~~~~~~~ 232 (485)
.+.||....|.+++++.|.+
T Consensus 271 aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 271 AHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ceeEEEEecCCcceeeeecCCc
Confidence 49999999999999998866
No 133
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=150.09 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=169.5
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSN--EPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
..+|.+..++||+-|.+|++||+...+. ...+.|. .....|.+++|++.+.+|+..+....++|.|-..++....
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~-- 251 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF-- 251 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeee--
Confidence 4578889999999999999999973221 1222332 3445799999999999999999899999998765443221
Q ss_pred EEEEcCC---CceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCccccc
Q 011473 97 SFRLKSD---TNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 97 ~~~~~~~---~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
.|.+ .+++.-++|.+.++|.+|+|+. ..|+|++.|+++||||+..-+. ++++..
T Consensus 252 ---~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~------------------ 310 (641)
T KOG0772|consen 252 ---SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT------------------ 310 (641)
T ss_pred ---eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee------------------
Confidence 1212 2455568999999999999975 5789999999999999976542 333311
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe--EE-EeecccCC--ccceeeeeeccC
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK--VS-RILGKVEN--NDRFLRIALYQG 245 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~--~v-~~~~~~~~--~~r~~~~s~~~~ 245 (485)
. .......++.+++|+++|+.||.|+.+| |++|+..... .. .+-..|.. .+.++.|
T Consensus 311 k-------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F----- 372 (641)
T KOG0772|consen 311 K-------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF----- 372 (641)
T ss_pred c-------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe-----
Confidence 0 0012234567999999999999999998 9999973211 11 11123332 1121111
Q ss_pred CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCC------Cccccccccc
Q 011473 246 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKP------PPDELLAVSD 319 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p------~~e~~~~~~~ 319 (485)
..|+..|+|=+.|..+++|+-|..+.-- +..-+++|-.| ++.+.++.+.
T Consensus 373 -----------------------S~dg~~LlSRg~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 373 -----------------------SYDGNYLLSRGFDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred -----------------------ccccchhhhccCCCceeeeeccccccch--hhhcCCCccCCCCccccCCCceEEEec
Confidence 2789999999999999999998765442 23556666554 3444444443
Q ss_pred CCCCccCCCCCEEEEEeCCeEEEEEec
Q 011473 320 IGNSVTTSLPDNVILHTTMGDIHMKLY 346 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~t~~G~i~i~L~ 346 (485)
.+.+.....+..+.+.+..=+++-+++
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred ccccCCCCCceEEEEeccceeeEEEec
Confidence 233333333334444444434444443
No 134
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=1.8e-16 Score=154.11 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=147.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--------CcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 24 KAGLAISDRNSSFVHIYDARADS--------NEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--------~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
++.++++.+..+.|.|||..... ..+-.+|.||++.=.+|+|++... .|+|++.|++|++||+..+....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~- 214 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED- 214 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-
Confidence 56788888889999999975211 123347889999788999999665 89999999999999987644321
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC--cEEEEeccchhHHHhhhcCCCccccc
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+...+...+.+|...|..++|+| +...|++++.|+.+.|||++++ ++.+...
T Consensus 215 ------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~------------------- 269 (422)
T KOG0264|consen 215 ------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK------------------- 269 (422)
T ss_pred ------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-------------------
Confidence 11344556889999999999999 5678999999999999999953 3222221
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEccc-CeEEEeecccCCccceeeeeeccCCcc
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
.....+++++|.|-+. .||+||.++ +++||++. .+.++++.+|+..+-.+.
T Consensus 270 -----------------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~--------- 323 (422)
T KOG0264|consen 270 -----------------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE--------- 323 (422)
T ss_pred -----------------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE---------
Confidence 2234567899987665 666777776 99999986 457788888885333222
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 249 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
|++-..++|||++.|+|+.+|+-.
T Consensus 324 ------------------WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 324 ------------------WSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ------------------eCCCCCceeEecccCCcEEEEecc
Confidence 233457889999999999999874
No 135
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.1e-17 Score=146.75 Aligned_cols=169 Identities=11% Similarity=0.160 Sum_probs=129.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
....++++|.|++|++||.. ..+-++++.||..-|...+||| ..++++|+|.|+++++||++. +
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~--r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---~---------- 180 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPN--RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---P---------- 180 (311)
T ss_pred cceeEEeeccCCceEeecCC--CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---C----------
Confidence 44566666999999999987 6778999999999999999999 567999999999999999754 1
Q ss_pred CCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 103 DTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
+..+. +..|...+.|+.|+. +-..++||+.|+.||+||++.-+. +-.+.+
T Consensus 181 gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--------------------------- 232 (311)
T KOG0277|consen 181 GKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--------------------------- 232 (311)
T ss_pred CceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC---------------------------
Confidence 22333 778889999999998 667899999999999999987552 112211
Q ss_pred hhhHhhhccCCCCCceEEECCCCC-EEEEecCC-CeEEEEccc-CeEEEeecccCCccceeeeeecc
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSN-FLIYATLL-GIKIVNLHT-NKVSRILGKVENNDRFLRIALYQ 244 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~-~i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~ 244 (485)
....+..+.|||... .|++++.| .+++||... ..++++...|..-.+-+-.|+|.
T Consensus 233 ---------h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 233 ---------HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFD 290 (311)
T ss_pred ---------CceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccccc
Confidence 111234778888776 67777777 499999884 45677777776445555566664
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.6e-16 Score=144.89 Aligned_cols=248 Identities=13% Similarity=0.157 Sum_probs=161.3
Q ss_pred ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEE
Q 011473 49 PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 128 (485)
Q Consensus 49 ~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~l 128 (485)
+-++|+ |.. -.|+.||+-|.+||.|-.||.|-+||..|+...+. +.+|..+|.+++||+||++|
T Consensus 17 l~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~--------------lsaH~~pi~sl~WS~dgr~L 80 (405)
T KOG1273|consen 17 LTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM--------------LSAHVRPITSLCWSRDGRKL 80 (405)
T ss_pred hceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhh--------------hhccccceeEEEecCCCCEe
Confidence 445564 222 68999999999999999999999999998765555 88999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc-----cc----cccccchhhhhHhhhccC----CCCCc
Q 011473 129 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR-----LE----AIDFGRRMAVEKEIEKTE----TAPPS 195 (485)
Q Consensus 129 at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~-----~~----~~~~g~~~~~~~~i~~~~----~~~~~ 195 (485)
+|+|.|..|++||+..|.+++.+.=.. ++...++.|...-. +. -..++.+.. +-+.... ...-.
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRFDS-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSAS 157 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEccC-ccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccc
Confidence 999999999999999999988762211 12222222210000 00 001111000 0011111 11112
Q ss_pred eEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC-CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCe
Q 011473 196 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE-NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT 273 (485)
Q Consensus 196 ~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~-~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 273 (485)
...|++.|+||++|+..| +.++|..|-+|+..+.-.. .+++-+.++ ..+.
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s----------------------------~~g~ 209 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS----------------------------RKGR 209 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe----------------------------ccCc
Confidence 346999999999999998 9999999999986553322 133433332 3456
Q ss_pred EEEeeecCceEEEEecCCCCCC----Cc--cCCCccccCCCC-------CcccccccccCCCCccCCCCCEEEEEeCCeE
Q 011473 274 LLCCAFKRHRIYLFSRREPEEP----ED--ATKGRDIFNEKP-------PPDELLAVSDIGNSVTTSLPDNVILHTTMGD 340 (485)
Q Consensus 274 l~~s~~~d~~i~~f~~~~~~~~----~~--~~~~rd~~n~~p-------~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~ 340 (485)
+|+.-..|..|+.+.-++-... |- .+.--|+.|..+ ...+..-++ .......-+++++.|.
T Consensus 210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~------s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG------SARAHALYIWEKSIGS 283 (405)
T ss_pred EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec------cccceeEEEEecCCcc
Confidence 7888889999999987642222 21 222355666544 111222221 1356678899999999
Q ss_pred EEEEecCCC
Q 011473 341 IHMKLYPEE 349 (485)
Q Consensus 341 i~i~L~~~~ 349 (485)
++=-|.+..
T Consensus 284 LVKILhG~k 292 (405)
T KOG1273|consen 284 LVKILHGTK 292 (405)
T ss_pred eeeeecCCc
Confidence 988888764
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.69 E-value=7e-17 Score=158.23 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=151.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.|+++-|+.|++-.++-|||+...+......+..-.-...+|+.|||.+.+.+|-.||.|.|||+++
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn------------- 540 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN------------- 540 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-------------
Confidence 4677778888889999999997544444445555455778899999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
++-+..|++|+..+.||.+|+||..|=||+.|.+||-||+++++.+...+=... |-.+...+..-|-...++.+....
T Consensus 541 -q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ-IfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 541 -QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ-IFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred -ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhh-heecccCCCccceeeecccCcEEE
Confidence 555666999999999999999999999999999999999999987655432111 111122222112111221111100
Q ss_pred -----hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011473 182 -----VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 182 -----~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
.++-........+-++.|.+.|++.++.+.|. +..|.+-.|.-+.-..+.. ++- +|-
T Consensus 619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-sVl----sCD------------ 681 (705)
T KOG0639|consen 619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVL----SCD------------ 681 (705)
T ss_pred EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-cce----eee------------
Confidence 01111111223456899999999999999887 8999988776443332222 111 110
Q ss_pred eccccccccCCCCCCCCeEEEeeecCceEEEE
Q 011473 256 PAAAANANESKEPFSDPTLLCCAFKRHRIYLF 287 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f 287 (485)
-..|..+|+|||+|.+--+|
T Consensus 682 ------------IS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 682 ------------ISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ------------eccCceEEEecCCCcceEEE
Confidence 02678899999999776665
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.1e-16 Score=164.12 Aligned_cols=209 Identities=12% Similarity=0.174 Sum_probs=147.1
Q ss_pred cceEEEEeCCCCeEEEEEcCC-CCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 24 KAGLAISDRNSSFVHIYDARA-DSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
...++++++..|.|-+||+.. ...+.+..|..|...|+++.||+. ..+|+|||.||+|++||++.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~------------- 165 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS------------- 165 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-------------
Confidence 567889999999999999962 124556678899999999999985 46899999999999999875
Q ss_pred CCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
......+.+....|..+.|+| .+.+|+++...|.+++||++..+.-
T Consensus 166 -~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-------------------------------- 212 (839)
T KOG0269|consen 166 -KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-------------------------------- 212 (839)
T ss_pred -ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--------------------------------
Confidence 333444677778899999999 7899999999999999999754320
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
++.+. .+..++.++.|+|++.|||+|+-|+ |||||..+++.-..+.=+. +-.|.+.-|.
T Consensus 213 --~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWR--------------- 272 (839)
T KOG0269|consen 213 --EKKLT-AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWR--------------- 272 (839)
T ss_pred --HHHhh-cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeec---------------
Confidence 11111 2344567999999999999999987 9999998654321111111 1111112221
Q ss_pred cccccCCCCCCCCeEEE--eeecCceEEEEecCCCCCCCc-cCCCccccCC
Q 011473 260 ANANESKEPFSDPTLLC--CAFKRHRIYLFSRREPEEPED-ATKGRDIFNE 307 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~--s~~~d~~i~~f~~~~~~~~~~-~~~~rd~~n~ 307 (485)
+.-+-.|| +-..|..|++|+-+.|....- ..++||+...
T Consensus 273 ---------P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 273 ---------PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred ---------cCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 12223344 345699999999998765532 2335555443
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=5.4e-16 Score=146.87 Aligned_cols=236 Identities=13% Similarity=0.172 Sum_probs=156.5
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC-----CCCCC-------
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-----LQFPE------- 93 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t-----~~~~~------- 93 (485)
..++||+.||.|+|||+. .-.++.+++.|.+.|..|++.. .-+++++.|.+|+.|-++- +-.-.
T Consensus 80 s~~aSGs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehh--hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 578899999999999997 6788999999999999999977 7789999999999994321 10000
Q ss_pred ------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHh
Q 011473 94 ------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQD 160 (485)
Q Consensus 94 ------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~ 160 (485)
.+=.|+..-..++..+.-....+.++.|+|-- ..|+++++|+.|.|||+++++.++.+--..+. ..
T Consensus 156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT-N~ 234 (433)
T KOG0268|consen 156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT-NT 234 (433)
T ss_pred ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc-cc
Confidence 01126666666777777777889999999965 56677779999999999999987755221111 12
Q ss_pred hhcCCCcccccccccccchh-----hhhHhh--hccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 161 LQRSDAPLYRLEAIDFGRRM-----AVEKEI--EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~-----~~~~~i--~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
+.|+|.+..-....+.-... .++..+ -......+.++.|||.|+-+++||.|. |+|+....+.-
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-------- 306 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-------- 306 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc--------
Confidence 23333221111111000000 001111 112333467899999999999999986 99998864431
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
| .+|..++.. .+..+ +| ..|+..|.|||+|..|+||-....+
T Consensus 307 ---R----diYhtkRMq-~V~~V----------k~-S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 307 ---R----DIYHTKRMQ-HVFCV----------KY-SMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ---h----hhhhHhhhh-eeeEE----------EE-eccccEEEecCCCcceeeeecchhh
Confidence 2 333322211 12222 12 2799999999999999999775543
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1e-15 Score=145.72 Aligned_cols=167 Identities=20% Similarity=0.325 Sum_probs=117.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
...+++|+|-|++|+|||+++...+.--..+.|.+.|+.+.||..-.+||||+.||+++|||++.++ .+
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-----------~~ 337 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-----------SG 337 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-----------CC
Confidence 4568999999999999999843233333338999999999999998899999999999999998743 46
Q ss_pred CceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 104 TNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
+++..|+-|+.+|++|.|+| +...||++|.|.+|.|||+..-+-....+. .....+++-|..+. .+..|.
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~--~a~~~L~dlPpQLL---FVHqGQ---- 408 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ--EAAEGLQDLPPQLL---FVHQGQ---- 408 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc--ccccchhcCCceeE---EEecch----
Confidence 78888999999999999999 567888999999999999864332111100 00111222222111 111121
Q ss_pred hHhhhccCCCCCceEEECCCCC-EEEEecCCCeEEEEc
Q 011473 183 EKEIEKTETAPPSNAIFDESSN-FLIYATLLGIKIVNL 219 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~i~v~d~ 219 (485)
++ +..+.|++.-. +|++.+.+|+.||..
T Consensus 409 -ke--------~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 409 -KE--------VKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred -hH--------hhhheeccCCCCeEEEecccceeEEEe
Confidence 12 23566776655 677777889888864
No 141
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=1.1e-15 Score=148.80 Aligned_cols=201 Identities=14% Similarity=0.147 Sum_probs=147.4
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.-+++++++++|+.|..|.|||.. +.++++++++|.+.|.+++|-.....+.|++.|+.|++|+++...+...
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet----- 281 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCD--TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET----- 281 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCc--ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-----
Confidence 346799999999999999999997 8899999999999999999988888999999999999998876444333
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+-+|+..|.+|....-++.+.+|+.|+++|+|++.....+ +|.++
T Consensus 282 ---------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~------------------------- 326 (479)
T KOG0299|consen 282 ---------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGG------------------------- 326 (479)
T ss_pred ---------HhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCC-------------------------
Confidence 7899999999999988888888889999999998433221 22221
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
...+.+++|= +...+++||++| |-+|++.+-+.+.+..-.. .+.-.. ..-++..=...+..
T Consensus 327 -----------~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH-gv~~~~-~~~~~~~Witsla~---- 388 (479)
T KOG0299|consen 327 -----------EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH-GVIPEL-DPVNGNFWITSLAV---- 388 (479)
T ss_pred -----------CCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccc-cccCCc-cccccccceeeeEe----
Confidence 1123477776 445678999988 9999999998887664321 011000 00000000001111
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
-+.+-|+|||+.++-++||--.
T Consensus 389 ----------i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 389 ----------IPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ----------cccCceEEecCCCCceEEEEec
Confidence 1667789999999999999554
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.9e-15 Score=146.64 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=149.7
Q ss_pred cCCCCCeEEEEEeC--CCCcceEEEEeCCCCeEEEEEcCCC-CCcceEEE------------------ecCCCCeEEEEE
Q 011473 7 LPFIPGAVEWVYKQ--GDVKAGLAISDRNSSFVHIYDARAD-SNEPLISK------------------KVHMGPVKVMRY 65 (485)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~~~~l~vs~s~d~~I~iwd~~~~-~~~~~~~l------------------~~h~~~V~~l~f 65 (485)
|+-.|-|++|+... ....+.+++-|.-|..|.|||+.-. .-.|..+| .+|+..|.+|+|
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34457899998772 1224556777778999999997411 11111122 279999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011473 66 NPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 66 spd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~ 143 (485)
+...+ .|||+|.|.+|++||+.++++.. .+..|...|.+++|+| ....|++||.|++|++.|.+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS--------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce--------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 98764 89999999999999999865544 4778899999999999 57899999999999999998
Q ss_pred CCcE---EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEE
Q 011473 144 TGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVN 218 (485)
Q Consensus 144 tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d 218 (485)
...+ .+.+++ .+-.++|+|... .+++++.+| ++-+|
T Consensus 318 ~~~~s~~~wk~~g---------------------------------------~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 318 DPSNSGKEWKFDG---------------------------------------EVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred CccccCceEEecc---------------------------------------ceEEEEecCCCceeEEEecCCceEEeee
Confidence 4221 111111 123678888776 445556677 89999
Q ss_pred ccc-CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 219 LHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 219 ~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
++. |++++++..|+..+..+.+ +. ..|.+++|++.|..+++|+-.
T Consensus 359 ~R~~~~~vwt~~AHd~~ISgl~~--n~-------------------------~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDDEISGLSV--NI-------------------------QTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred cCCCCCceeEEEeccCCcceEEe--cC-------------------------CCCcceeeccccceEEEEeec
Confidence 986 5999999999866553332 21 457789999999999999764
No 143
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=1.9e-15 Score=153.52 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=149.4
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF--DTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~--~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+.-..+||+|++.|..|+|||+. .+..+++++.+|++.|++|.|.-.| ..++||+.|+.|.+- ... .......|
T Consensus 512 p~~~~kLLASasrdRlIHV~Dv~-rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr-~~q--k~~~g~~f 587 (1080)
T KOG1408|consen 512 PVLTNKLLASASRDRLIHVYDVK-RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR-VNQ--KASSGRLF 587 (1080)
T ss_pred chhhhHhhhhccCCceEEEEecc-cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee-hhc--cccCceec
Confidence 34456799999999999999996 3567899999999999999998877 689999999988653 211 00000000
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
-. . +..-.+..++.++..|..++++++|.|+.|||||+++||..+.|.++.
T Consensus 588 ~r--~----t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~----------------------- 638 (1080)
T KOG1408|consen 588 PR--H----TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR----------------------- 638 (1080)
T ss_pred cc--c----ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc-----------------------
Confidence 00 0 011123558899999999999999999999999999999999985411
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
.+......+..||+|.||++.+.+. +.++|..+|+|+...-||..-+.-+.|
T Consensus 639 ----------~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF----------------- 691 (1080)
T KOG1408|consen 639 ----------DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF----------------- 691 (1080)
T ss_pred ----------cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee-----------------
Confidence 1112234678999999999988775 999999999999777777533332222
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+|..-|+|.++|+-|++|--
T Consensus 692 -----------~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 692 -----------LNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -----------cccchhheeecCCceEEEEEC
Confidence 278888999999999999965
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=142.68 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=149.8
Q ss_pred eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC--------------CCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeC
Q 011473 13 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--------------DSNEPLISKKVHMGPVKVMRYNPVF-DTVISADD 77 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~--------------~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~ 77 (485)
++.-+....-++..++++=++.|.|+|||+.. ....++.++.+|+..=.+|.|||-- ..|+||+.
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 33344444445677888889999999999851 1246889999999999999999933 35899999
Q ss_pred CCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccchh
Q 011473 78 KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLE 156 (485)
Q Consensus 78 dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~ 156 (485)
-+.|++|...++. |.+ +-..|.+|+..|-.++|||. ...||++|.|++|||||+++++.-..+-
T Consensus 233 ~~~I~lw~~~~g~-------W~v----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~---- 297 (440)
T KOG0302|consen 233 VKGIHLWEPSTGS-------WKV----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS---- 297 (440)
T ss_pred ccceEeeeeccCc-------eee----cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE----
Confidence 9999999776533 321 22336789999999999995 4688999999999999999984311110
Q ss_pred HHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc---CeEEEeecccC
Q 011473 157 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT---NKVSRILGKVE 232 (485)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t---g~~v~~~~~~~ 232 (485)
.+....-++-|+|+..-.+|++|+++| ++|||+.+ ++.|..+..|.
T Consensus 298 ------------------------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 298 ------------------------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred ------------------------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 001112346788988878999999998 99999864 56666666666
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.++..+.. ..-+...|+.+++|++|-||+-.
T Consensus 348 ~pItsieW---------------------------~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 348 APITSIEW---------------------------HPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCeeEEEe---------------------------ccccCceEEeccCCCcEEEEEee
Confidence 54443222 23556778899999999999864
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=152.25 Aligned_cols=196 Identities=9% Similarity=0.078 Sum_probs=152.3
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCc
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 105 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~ 105 (485)
..+++++.+++|.+|... +++.-..|..-+-++++++|+-+|+++|.||.|-.|++-+..+ ...
T Consensus 67 ~~f~~~s~~~tv~~y~fp--s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D--------------~s~ 130 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFP--SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--------------SSQ 130 (933)
T ss_pred cceEEeeccceEEEeeCC--CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc--------------cch
Confidence 377888899999999987 4444334445567999999999999999999999999998766 445
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHh
Q 011473 106 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 185 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~ 185 (485)
...+++|+++|.++.|+|.+.+||+.+.||+|++||+.++.+..++.+-.... ..
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n--------------~~----------- 185 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN--------------EF----------- 185 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccc--------------cc-----------
Confidence 56699999999999999999999999999999999999999987774411100 00
Q ss_pred hhccCCCCCceEEECCC-CCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccccc
Q 011473 186 IEKTETAPPSNAIFDES-SNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 264 (485)
Q Consensus 186 i~~~~~~~~~~i~fd~~-g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 264 (485)
.....+..++|+|+ |++++.+..+.|++++..+++...++........ +++.+
T Consensus 186 ---~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~---~~~~~-------------------- 239 (933)
T KOG1274|consen 186 ---ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK---FSDLQ-------------------- 239 (933)
T ss_pred ---cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc---eEEEE--------------------
Confidence 00223467899999 5666667777799999999999888876542211 22221
Q ss_pred CCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 265 SKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 265 ~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
| .|.+..||++.-|+.|-||+-+.
T Consensus 240 --w-sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 --W-SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --E-cCCCcEEeeeccCCcEEEEeccc
Confidence 1 27899999999999999998864
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=4.9e-14 Score=137.77 Aligned_cols=185 Identities=11% Similarity=0.097 Sum_probs=133.0
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.+++|++.|+.|++||+. +++++..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~--t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------------- 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA--TLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------------- 65 (300)
T ss_pred cEEEEecCCCEEEEEECC--CCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------------
Confidence 467888899999999997 6778888886654 6789999999876 6777899999999877442
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
+..+..+.. +..++|+|+|+.++++ +.|+.|++||+++++++..++..
T Consensus 66 -~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------------------------- 114 (300)
T TIGR03866 66 -IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------------------------- 114 (300)
T ss_pred -EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------------------------
Confidence 222333332 5678999999977655 56899999999998877665310
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC--eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG--IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~--i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
.....++|+|+|+++++++.++ +.+||..+++++..+.... ..+.+ .|.
T Consensus 115 --------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~---~~s----------------- 165 (300)
T TIGR03866 115 --------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-RPRFA---EFT----------------- 165 (300)
T ss_pred --------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-CccEE---EEC-----------------
Confidence 0124789999999999988764 6788998888765543222 11211 111
Q ss_pred cccCCCCCCCCeE-EEeeecCceEEEEecCCCCC
Q 011473 262 ANESKEPFSDPTL-LCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 262 ~~~~~~~~~d~~l-~~s~~~d~~i~~f~~~~~~~ 294 (485)
+|+.. ++++..++++++|+.+..+.
T Consensus 166 --------~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 166 --------ADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred --------CCCCEEEEEcCCCCEEEEEEcCccee
Confidence 55554 46666799999998875543
No 147
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.9e-16 Score=150.79 Aligned_cols=322 Identities=15% Similarity=0.203 Sum_probs=208.8
Q ss_pred eEEEEeCCCCeEEEEEcCCC----CCcceE---------EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011473 26 GLAISDRNSSFVHIYDARAD----SNEPLI---------SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~----~~~~~~---------~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
-.++|....|.|..|..... ...... .+..-+...+++.|+|++..+.+-+.|..|++.+..++++.
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 35677777899999987620 111111 12234567789999999999999999999999998888765
Q ss_pred Cce------eEEEEcCC---------Cce---EEeecCCcc-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--
Q 011473 93 ESE------VSFRLKSD---------TNL---FEILKSKTT-VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-- 151 (485)
Q Consensus 93 ~~~------~~~~~~~~---------~~l---~~~~~~~~~-v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-- 151 (485)
+.. ..++-++. ..+ +++.+|.+. -+.+.|...|++|+-++-=| |+|.++.|+.++|++
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 420 00111110 000 123344433 35688999999988766554 999999999999999
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeeccc
Q 011473 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~ 231 (485)
+|.++.... ++|+-... +.+.+. +......+. +.|.+|=. +.|+....+.++++ .+ -...
T Consensus 316 ~e~ir~~~~------sl~q~~~k--~~~~~~--~~~a~~np~---~~~~~dpt--~~c~a~kk~rfylf-~e----p~~~ 375 (558)
T KOG0882|consen 316 DEAIRFTRL------SLYQGAQK--SNLAAL--EVAASNNPL---LEFQKDPT--IVCTAFKKNRFYLF-RE----PEFT 375 (558)
T ss_pred chhhhhhhH------HHHhhhhh--ccchhh--hhhhccCcc---cccCCCCe--EEEeeeecceEEEE-ec----CCCC
Confidence 455544321 11111111 122222 333333332 22544422 34444333333333 11 1111
Q ss_pred CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC
Q 011473 232 ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP 309 (485)
Q Consensus 232 ~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p 309 (485)
+ ..| .+|+++|.++.+++..- ..-....++..+++|..+|.+++||+.+|||++|| +|++|+|||+..
T Consensus 376 ~-~~~----dvfne~p~~~~~~~~~~-----~~g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~ 445 (558)
T KOG0882|consen 376 E-SDR----DVFNEKPLKEELMEARQ-----EEGNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHT 445 (558)
T ss_pred c-chh----hhhccCcChhHhhhhhh-----ccCceecccceEEEecccceEEEecccccchhhhhhhccccCccccCcc
Confidence 2 234 89999888776544311 11222347899999999999999999999999999 999999999987
Q ss_pred ---CcccccccccCCCCccCCCCCEEEEEeCCeE-EEEEecCCCChHH------------HHHHHHhhhcCccCC--ceE
Q 011473 310 ---PPDELLAVSDIGNSVTTSLPDNVILHTTMGD-IHMKLYPEECPKT------------VENFTTHCRNEYYNN--LIF 371 (485)
Q Consensus 310 ---~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~-i~i~L~~~~aP~~------------~~nF~~l~~~~~y~g--~~f 371 (485)
..+.+++|+ ++|.+.++++..+|.-.+-+ +.=.|..| -|-+ .+.|+..|-..|.|| +.|
T Consensus 446 fhriik~fmiqt--gdp~g~gtggesiwg~dfedefh~~lrhd-rpft~smanag~ntngsqffit~~~tpwld~khtvf 522 (558)
T KOG0882|consen 446 FHRIIKGFMIQT--GDPLGDGTGGESIWGKDFEDEFHPNLRHD-RPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVF 522 (558)
T ss_pred hHHhhhhheeec--CCCCCCCCCCcccccccchhhcCcccccC-CCceEEecccCCCCCCceEEEEecCccccCCcceeE
Confidence 688999999 99999999999999877654 44444443 4433 357888888888886 899
Q ss_pred EEEEeCc-EEE
Q 011473 372 HRVIKGF-MIQ 381 (485)
Q Consensus 372 ~rv~~~~-~iq 381 (485)
-|+..|. ++|
T Consensus 523 grv~~gm~vvq 533 (558)
T KOG0882|consen 523 GRVTAGMDVVQ 533 (558)
T ss_pred EEEecchhHHh
Confidence 9999986 555
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2e-14 Score=133.79 Aligned_cols=251 Identities=14% Similarity=0.167 Sum_probs=151.4
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCce
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESE 95 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~ 95 (485)
..+..++.++++|.|++|+|||.+.+++ .+-...+.|.+.|..|.|.+ -|+.+|+||.|+++.||.-..-......
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 3466889999999999999999764443 45556779999999999965 3789999999999999954211111110
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEE--ecc-----------chhHHHh
Q 011473 96 VSFRLKSDTNLFEILKSKTTVSAIEVSP--DGKQFSITSPDRRIRVFWFRTGKLRRV--YDE-----------SLEVAQD 160 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~sp--dg~~lat~s~D~~I~iwd~~tg~~~~~--~~~-----------~~~~i~~ 160 (485)
..|. ....+....+.|+++.|.| -|-+||+++.||++|||+.-.---+.. +.. +.....+
T Consensus 100 ~~Wv-----~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 100 RRWV-----RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred ceeE-----EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 1121 1234666778899999999 588999999999999998654222221 111 1111222
Q ss_pred hhcCCC----cccc---------------cccccccchhhhhHhhhccCCCCCceEEECCCC----CEEEEecCCCeEEE
Q 011473 161 LQRSDA----PLYR---------------LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS----NFLIYATLLGIKIV 217 (485)
Q Consensus 161 ~~~~~~----~~~~---------------~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g----~~l~~~s~~~i~v~ 217 (485)
+.+.+. .++. ..-.+.+|+.....++. ....++..|+|.|+- +.|++++.+||+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKDGVRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecCcEEEE
Confidence 222221 1111 11123344443333443 455677899999873 47899999999999
Q ss_pred EcccCe-EE---EeecccC-CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 218 NLHTNK-VS---RILGKVE-NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 218 d~~tg~-~v---~~~~~~~-~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+..-+ .+ ..+.... .....-.++.|.++.. .+= ...|+ -.+++|+|++.|+.+++|-.
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--~VW----------rv~wN-mtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG--EVW----------RVRWN-MTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCC--ceE----------EEEEe-eeeeEEeecCCCceeeehhh
Confidence 986422 00 0000000 0011112233322110 011 11222 56889999999999999954
No 149
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.3e-15 Score=150.52 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=150.2
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++..+.++++- ...|++|+.. ++....-...+...|++|.|+++|+.|+.|-.+|.|.|||..+.+....
T Consensus 185 Wss~n~laVal--g~~vylW~~~--s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------ 254 (484)
T KOG0305|consen 185 WSSANVLAVAL--GQSVYLWSAS--SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------ 254 (484)
T ss_pred cccCCeEEEEe--cceEEEEecC--CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------
Confidence 34455666654 4679999986 4443333334589999999999999999999999999999987544433
Q ss_pred cCCCceEEeec-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 101 KSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 101 ~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+..-.
T Consensus 255 --------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----------------------------- 295 (484)
T KOG0305|consen 255 --------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----------------------------- 295 (484)
T ss_pred --------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-----------------------------
Confidence 667 89999999998 77899999999999999987664211
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
....+...++.+.|++|+++|++|+.|. +.|||...-+.+..+..|...++-++++-|+
T Consensus 296 ------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-------------- 355 (484)
T KOG0305|consen 296 ------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-------------- 355 (484)
T ss_pred ------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc--------------
Confidence 0123344568999999999999999987 9999998888889999998788877776665
Q ss_pred ccccccCCCCCCCCeEEEee--ecCceEEEEecCCCCCC
Q 011473 259 AANANESKEPFSDPTLLCCA--FKRHRIYLFSRREPEEP 295 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~--~~d~~i~~f~~~~~~~~ 295 (485)
+.+|||| +.|.+|++|+.......
T Consensus 356 -------------~~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 356 -------------SGLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred -------------cCceEEcCCCcccEEEEEEcCCCcEe
Confidence 3457775 55999999988754433
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.64 E-value=8.1e-15 Score=147.76 Aligned_cols=226 Identities=16% Similarity=0.197 Sum_probs=145.2
Q ss_pred eCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEE--EecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCc-
Q 011473 19 KQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS--KKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPES- 94 (485)
Q Consensus 19 ~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~--l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~- 94 (485)
..+-|...++|+++.|.+|++||++ ...+... +.||...|.+++|.|+.. .+++|+.||.|.|||++--.....
T Consensus 106 l~wapge~~lVsasGDsT~r~Wdvk--~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e 183 (720)
T KOG0321|consen 106 LKWAPGESLLVSASGDSTIRPWDVK--TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALE 183 (720)
T ss_pred eccCCCceeEEEccCCceeeeeeec--cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHH
Confidence 3455667789999999999999998 5555544 779999999999999765 789999999999998753221000
Q ss_pred ---eeEEEEcCC--CceE-------EeecCCccEEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhHH
Q 011473 95 ---EVSFRLKSD--TNLF-------EILKSKTTVSA---IEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVA 158 (485)
Q Consensus 95 ---~~~~~~~~~--~~l~-------~~~~~~~~v~~---i~~spdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~i 158 (485)
...+....+ ++.. ..+.+...+.+ +.+..|...||++|. |+.|||||++...+......
T Consensus 184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep----- 258 (720)
T KOG0321|consen 184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP----- 258 (720)
T ss_pred HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC-----
Confidence 000000111 1211 12233344554 667788899999997 99999999998776432210
Q ss_pred HhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccce
Q 011473 159 QDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRF 237 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~ 237 (485)
.+...+... .....-+.+++.|..|.+|...|.|+ |..||+.+-.+ +
T Consensus 259 -----~~~~~~~t~---------------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~-----------s- 306 (720)
T KOG0321|consen 259 -----RGSDKYPTH---------------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI-----------S- 306 (720)
T ss_pred -----CcccCccCc---------------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc-----------C-
Confidence 000000000 11122346899999999887777665 99999865321 1
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
++++|.+++.+.- -..+...+|...++||+-|.+.|+|.-..++..
T Consensus 307 -P~~~~sg~~~~sf-----------~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 307 -PVAEFSGKLNSSF-----------YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred -chhhccCccccee-----------eeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 3345544321110 011223499999999999999999988766544
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.63 E-value=4.5e-15 Score=142.62 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=118.4
Q ss_pred EEEEeCCCCeEEEEEcCCC---C----CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC-C------
Q 011473 27 LAISDRNSSFVHIYDARAD---S----NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF-P------ 92 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~---~----~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~-~------ 92 (485)
.++||+.|..||||-+... . -+.+..|..|...|++|+|+|+|++|+||+.+|.|.+|-...-.. .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 7888989999999987521 1 123456778999999999999999999999999999994331000 0
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
...-.|.. ...+.+|...+..++|+||+.++++++.|..+++||+..|+++..+++|-..+
T Consensus 108 ~~ke~w~v-----~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv-------------- 168 (434)
T KOG1009|consen 108 LNKEKWVV-----KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV-------------- 168 (434)
T ss_pred hCccceEE-----EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc--------------
Confidence 00001211 23467798999999999999999999999999999999999999988755443
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE
Q 011473 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
+-++|||-++|+++-+.+. .+.+++..-+++
T Consensus 169 ----------------------qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 169 ----------------------QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred ----------------------ceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence 3667888888888877665 566665544433
No 152
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.63 E-value=6.9e-15 Score=152.21 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=148.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISK---KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l---~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+.+++-|+..|+|-+|+++ ++-..+++ +.|+++|+.|+...-++.++|++.+|.+++||.....+..
T Consensus 460 GNF~~IG~S~G~Id~fNmQ--SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-------- 529 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQ--SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-------- 529 (910)
T ss_pred CceEEEeccCCeEEEEEcc--cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee--------
Confidence 4567778889999999998 66666667 4899999999999999999999999999999986532211
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
.++ -...+.++..+.....||.++.|-.|+++|+.|.+.+|.|.+|..
T Consensus 530 ------~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n------------------------- 577 (910)
T KOG1539|consen 530 ------SLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN------------------------- 577 (910)
T ss_pred ------eec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-------------------------
Confidence 122 234577888888999999999999999999999998877754322
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
.++.++|||||++|+++++|+ |++||+.|+.++..+.-.. ....+.+
T Consensus 578 -----------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~-~~~sls~-------------------- 625 (910)
T KOG1539|consen 578 -----------RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS-PCTSLSF-------------------- 625 (910)
T ss_pred -----------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC-cceeeEE--------------------
Confidence 235889999999999999987 9999999999997776554 2222211
Q ss_pred ccccCCCCCCCCeEEEeeecC-ceEEEEecCCC
Q 011473 261 NANESKEPFSDPTLLCCAFKR-HRIYLFSRREP 292 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d-~~i~~f~~~~~ 292 (485)
.|.+-++||++.| .=||+|+++.-
T Consensus 626 --------SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 626 --------SPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred --------CCCCCEEEEEEecCceEEEEEchhH
Confidence 2888999999999 88999999753
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=1.5e-13 Score=134.28 Aligned_cols=209 Identities=13% Similarity=0.112 Sum_probs=132.3
Q ss_pred Ccce-EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCc------
Q 011473 23 VKAG-LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPES------ 94 (485)
Q Consensus 23 ~~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~------ 94 (485)
|++. ++++++.++.|++||+. +++.++.+..|.. +..++|+|+++.++ +++.|+.+++||+.+.+....
T Consensus 40 ~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 116 (300)
T TIGR03866 40 KDGKLLYVCASDSDTIQVIDLA--TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE 116 (300)
T ss_pred CCCCEEEEEECCCCeEEEEECC--CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC
Confidence 3444 55777789999999997 6677777765544 46789999999665 556789999999877542210
Q ss_pred --eeEE--------------------EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEe
Q 011473 95 --EVSF--------------------RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 --~~~~--------------------~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~ 151 (485)
.+.| +......+..+. ....+.+++|+|||++|+.++ .|+.|++||+.++++++.+
T Consensus 117 ~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 117 PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 0111 111111111111 122356789999999886554 6999999999999988776
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEe--cCCCeEEEEcccCeEEEeec
Q 011473 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA--TLLGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~--s~~~i~v~d~~tg~~v~~~~ 229 (485)
+.+...+. ........++|+|+|++++.+ +.+.+.+||..++++++.+.
T Consensus 196 ~~~~~~~~-----------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 196 TFEIPGVH-----------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred eecccccc-----------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 42110000 001112468899999986554 34469999999998876553
Q ss_pred ccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEee-ecCceEEEEecCCCC
Q 011473 230 KVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA-FKRHRIYLFSRREPE 293 (485)
Q Consensus 230 ~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~-~~d~~i~~f~~~~~~ 293 (485)
.+. ....+. | .||+..|+++ ..++.|++|+.+..+
T Consensus 247 ~~~-~~~~~~---~-------------------------~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 247 VGQ-RVWQLA---F-------------------------TPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred eCC-CcceEE---E-------------------------CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 222 122111 1 1666666665 569999999887544
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.3e-14 Score=144.73 Aligned_cols=236 Identities=14% Similarity=0.154 Sum_probs=151.9
Q ss_pred cceEEEEeCCCCeEEEEEcC---C---CCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDAR---A---DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~---~---~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
..-.+++++.|+++++|.+. . ...+++.+|.+|.+||.|+++.+.++.+.|++.||+|+.|++-...-|-. .
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d--s 382 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD--S 382 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc--c
Confidence 34478899999999999992 1 12468899999999999999999999999999999999994421110100 0
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh---H----------HHhhhcC
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE---V----------AQDLQRS 164 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~---~----------i~~~~~~ 164 (485)
+....-.-.+.||...|+.+++|+....|++++.|+++|+|+...... .+|.+.-. + .-..+.-
T Consensus 383 --~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~ 459 (577)
T KOG0642|consen 383 --YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASF 459 (577)
T ss_pred --cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhc
Confidence 000112234789999999999999999999999999999999876554 33321100 0 0000000
Q ss_pred CCcccccccccccchhhhhHhhhcc---CCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeee
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKT---ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI 240 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~---~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~ 240 (485)
....+.+..++-+..+.+....... ....+.-+...|++-+.+.+-.+. |+++|..+|++++....|...+..+++
T Consensus 460 ~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai 539 (577)
T KOG0642|consen 460 RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAI 539 (577)
T ss_pred ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceee
Confidence 0111222222211111111000011 113345677788887777777665 899999888887666555422221111
Q ss_pred eeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 241 ALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.+.+..|++++.|+++++|....+
T Consensus 540 ----------------------------~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 540 ----------------------------DPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ----------------------------cCCCceEEeecCCceeehhhccch
Confidence 277888999999999999977544
No 155
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.2e-14 Score=125.66 Aligned_cols=161 Identities=14% Similarity=0.233 Sum_probs=120.4
Q ss_pred eEEEEEeCCCCcceEEEEeC-CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 13 AVEWVYKQGDVKAGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s-~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
..+|+..+. ..+.+++|++ .|..|++-|.. .++..+.+.||++.|.++ ++=++-+++|+|.|.+|++||++...+
T Consensus 141 dl~fld~~~-s~~~il~s~gagdc~iy~tdc~--~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 141 DLAFLDDPE-SGGAILASAGAGDCKIYITDCG--RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred eeEEecCCC-cCceEEEecCCCcceEEEeecC--CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce
Confidence 455655443 3566666654 46677776764 889999999999999887 455688999999999999999865322
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
... .+++.+.---..+.|.+++..|.|++||+|-.|....+||++-|+.++.|-.|..
T Consensus 217 v~~-------l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa--------------- 274 (350)
T KOG0641|consen 217 VNT-------LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA--------------- 274 (350)
T ss_pred eee-------ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc---------------
Confidence 211 0111111011236799999999999999999999999999999999988844322
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
.+.++.|+|...||+++|.+- ||+-|++
T Consensus 275 ---------------------dir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 275 ---------------------DIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ---------------------ceeEEEeCCCceEEEEecccceEEEeecc
Confidence 234889999999999999986 9999886
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.9e-14 Score=149.15 Aligned_cols=154 Identities=14% Similarity=0.217 Sum_probs=123.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++..++.||+|-.|++-++. +......+++|.++|.+|.|+|.+.+||+.+.||.|++||++++.+... -
T Consensus 107 ~g~~iaagsdD~~vK~~~~~--D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t--------l 176 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLD--DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT--------L 176 (933)
T ss_pred CCcEEEeecCceeEEEEecc--ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh--------c
Confidence 56789999999999999987 6667888999999999999999999999999999999999998765543 0
Q ss_pred CceE-EeecC-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 104 TNLF-EILKS-KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 104 ~~l~-~~~~~-~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+.+. ...-. ...+..++|+|+|..||..+.|+.|++|+..+......+...
T Consensus 177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~--------------------------- 229 (933)
T KOG1274|consen 177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK--------------------------- 229 (933)
T ss_pred ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc---------------------------
Confidence 0000 01111 355788999999999999999999999999998876666320
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
.....++.+.|||+|+|||+++.++ |-|||..|
T Consensus 230 -------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 -------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -------ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 0011146889999999999999987 99999987
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=134.46 Aligned_cols=203 Identities=12% Similarity=0.102 Sum_probs=143.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC---CCCCCCceeEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH---TLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~---t~~~~~~~~~~ 98 (485)
..+..++.|++.|.+|.|||++ ++.+.++......-+..+.||+|+++++++.---+++|.+- .+.+
T Consensus 196 A~~~k~imsas~dt~i~lw~lk---Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~f------- 265 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK---GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTF------- 265 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC---CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcch-------
Confidence 3467899999999999999995 78888887777777788999999999999999999999541 1211
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+.-...+.+++|++.|.+++|||+++.++|.|.||++||||+.- .+..++....+... .
T Consensus 266 --qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV---rY~~~qDpk~Lk~g----------------~ 324 (420)
T KOG2096|consen 266 --QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV---RYEAGQDPKILKEG----------------S 324 (420)
T ss_pred --hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc---eEecCCCchHhhcC----------------C
Confidence 11234567899999999999999999999999999999999752 11111111111100 0
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecc-cCCccceeeeeeccCCccCcceeeeec
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGK-VENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~-~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
..+......+ ..++.+|+|+.|+.+.-..++++..++|+..-.++. |+..+..+++
T Consensus 325 -----~pl~aag~~p-~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~----------------- 381 (420)
T KOG2096|consen 325 -----APLHAAGSEP-VRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISY----------------- 381 (420)
T ss_pred -----cchhhcCCCc-eEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEe-----------------
Confidence 0011111222 478999999999998887899999999986655533 3322221111
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+|+..++|. +|..++++.+.
T Consensus 382 -----------~~~g~~~atc-Gdr~vrv~~nt 402 (420)
T KOG2096|consen 382 -----------SSDGKYIATC-GDRYVRVIRNT 402 (420)
T ss_pred -----------cCCCcEEeee-cceeeeeecCC
Confidence 2777777765 67789999754
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=1e-14 Score=136.75 Aligned_cols=236 Identities=14% Similarity=0.209 Sum_probs=157.0
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
+.|.|.......++.++++| .-|.|||.|+. +.++...+.+|...|+.+.|+|+. ++++|||.|..||+|++++..
T Consensus 93 ytcsw~yd~~~~~p~la~~G-~~GvIrVid~~--~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGG-YLGVIRVIDVV--SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred EEEEEEecCCCCCeeEEeec-ceeEEEEEecc--hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 67899888766677777776 78999999997 778888999999999999999976 689999999999999998843
Q ss_pred CCCceeEEEEcCCCceEE---eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe----------------
Q 011473 91 FPESEVSFRLKSDTNLFE---ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY---------------- 151 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~---~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~---------------- 151 (485)
++.. +.+|...|.++.|+++|.++|++|.|.++++|++...+....+
T Consensus 170 --------------Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 170 --------------CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred --------------EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 3333 4679999999999999999999999999999999843321111
Q ss_pred ------------ccchhHHHhhhcCCC---------cccccccccccchhh------hhHhhhccCCCC-----CceEEE
Q 011473 152 ------------DESLEVAQDLQRSDA---------PLYRLEAIDFGRRMA------VEKEIEKTETAP-----PSNAIF 199 (485)
Q Consensus 152 ------------~~~~~~i~~~~~~~~---------~~~~~~~~~~g~~~~------~~~~i~~~~~~~-----~~~i~f 199 (485)
+-|..++.+.+|-.. ++........+.++- .+..+...-..+ ..-.+|
T Consensus 236 t~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 223334444443221 111111101111100 000011111111 124477
Q ss_pred CCCCCEEEEecCCC-eEEEEcccCeEE--EeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEE
Q 011473 200 DESSNFLIYATLLG-IKIVNLHTNKVS--RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 276 (485)
Q Consensus 200 d~~g~~l~~~s~~~-i~v~d~~tg~~v--~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 276 (485)
||=++.|+.|...| +.+||+...+.. -++-.+. ..+-+.=.+| ..|+.+|+
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sf-------------------------S~dgs~lv 369 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSF-------------------------SRDGSILV 369 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeee-------------------------cccCcEEE
Confidence 99999999998877 999999876542 2222222 1121111122 26788888
Q ss_pred eeecCceEEEEecC
Q 011473 277 CAFKRHRIYLFSRR 290 (485)
Q Consensus 277 s~~~d~~i~~f~~~ 290 (485)
.--+|..|-=|++.
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 88899999999875
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.60 E-value=5.1e-14 Score=137.22 Aligned_cols=225 Identities=14% Similarity=0.150 Sum_probs=155.3
Q ss_pred EEEeCCCCcceEEEEeCCCCeEEEEEcC--CCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCC
Q 011473 16 WVYKQGDVKAGLAISDRNSSFVHIYDAR--ADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 16 ~~~~~~~~~~~l~vs~s~d~~I~iwd~~--~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
.+..++..+..++++|+..|.|-+||+. .....-+..+..|+.+|.++.|+|.. ..+++.|.||+|++-|.++..+.
T Consensus 191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e 270 (498)
T KOG4328|consen 191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE 270 (498)
T ss_pred EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence 3344445455788888899999999994 12234466677999999999999965 58999999999999887753321
Q ss_pred C---------------------ce---------eEEEEcCCC-ceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 011473 93 E---------------------SE---------VSFRLKSDT-NLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVF 140 (485)
Q Consensus 93 ~---------------------~~---------~~~~~~~~~-~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iw 140 (485)
. .. -+|+++++. ....+.-|+..|.+++++|- -.+|||+|.|++.+||
T Consensus 271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW 350 (498)
T KOG4328|consen 271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW 350 (498)
T ss_pred HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence 0 00 113444333 24445667789999999995 4688999999999999
Q ss_pred ECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEc
Q 011473 141 WFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 219 (485)
Q Consensus 141 d~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~ 219 (485)
|++.-.-... | -++. -.+...+.+..|||+|-.|++.+.+. |+|||.
T Consensus 351 D~R~l~~K~s--------------p-~lst-----------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 351 DLRQLRGKAS--------------P-FLST-----------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ehhhhcCCCC--------------c-ceec-----------------ccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 9875321110 0 0000 02234567899999999899888875 999998
Q ss_pred ----ccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 220 ----HTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 220 ----~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
...+.+.++.+.....|++ +-|+. .|. ||..+|+.|---..|-+|+....+++
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~Rwl--T~fKA--------------------~W~-P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWL--TPFKA--------------------AWD-PDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred ccccccCCccceeeccCcccccc--cchhh--------------------eeC-CCccEEEEeccCcceeEEcCCCCEEe
Confidence 4555566666654344544 33432 122 78888999988888999988766644
No 160
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.9e-14 Score=129.97 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=119.3
Q ss_pred eeeecCCCCC-eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 011473 3 LMIRLPFIPG-AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGII 81 (485)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i 81 (485)
+.++|++.|. .+.-+..+ ...+.|||+. .||++++||+. ...+...+ .|..|+.+++|.+ ...+++++.||.|
T Consensus 4 ~~~~l~npP~d~IS~v~f~-~~~~~LLvss-WDgslrlYdv~--~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 4 NEFELENPPEDGISSVKFS-PSSSDLLVSS-WDGSLRLYDVP--ANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQV 77 (323)
T ss_pred cccccCCCChhceeeEEEc-CcCCcEEEEe-ccCcEEEEecc--chhhhhhe-ecCCceeeeeccC-CceEEEeccCceE
Confidence 4566777763 34444444 2244555555 99999999997 44444444 5899999999987 4678999999999
Q ss_pred EEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhh
Q 011473 82 EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 161 (485)
Q Consensus 82 ~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 161 (485)
+..|+.++.. ..+..|...+.|+.+++--..+++||.|++|++||.+...+.-+++.
T Consensus 78 r~~Dln~~~~---------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------- 134 (323)
T KOG1036|consen 78 RRYDLNTGNE---------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-------- 134 (323)
T ss_pred EEEEecCCcc---------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--------
Confidence 9999987432 22567889999999999888999999999999999987444434322
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEE
Q 011473 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSR 226 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~ 226 (485)
+.++ -+-|-.|+.|+.|+.+. +.+||+.+.+...
T Consensus 135 ---~kkV----------------------------y~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 135 ---GKKV----------------------------YCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ---CceE----------------------------EEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 0111 13455788899988775 9999998766543
No 161
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.4e-13 Score=128.52 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=110.5
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC--------ceeEE
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE--------SEVSF 98 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~--------~~~~~ 98 (485)
.|+||++||.|.+|++. ...+++++++|++.|+.++.||.+++.+|.+.|+.+++||+-+++... ..+.|
T Consensus 99 hLlS~sdDG~i~iw~~~--~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w 176 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVG--SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW 176 (362)
T ss_pred heeeecCCCcEEEEEcC--CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE
Confidence 67889999999999996 789999999999999999999999999999999999999987655321 12223
Q ss_pred EEcCC---------CceEEee--------cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhh
Q 011473 99 RLKSD---------TNLFEIL--------KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 161 (485)
Q Consensus 99 ~~~~~---------~~l~~~~--------~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 161 (485)
.-+.+ -.++.+. .....+.|+.|- ++..|++|+.|+.|++||..++.++..+..|..-+.
T Consensus 177 ~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK-- 253 (362)
T KOG0294|consen 177 SPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK-- 253 (362)
T ss_pred cCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee--
Confidence 21100 0111110 011223444443 556677777777777777777666666655443332
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEE-E-CCCCCEEEEecCCC-eEEEEcccC
Q 011473 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI-F-DESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~-f-d~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
.+. | +|.+.||+++|.+| |++||+...
T Consensus 254 ----------------------------------~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 ----------------------------------DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ----------------------------------eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 333 3 67889999999998 999999876
No 162
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=2.9e-14 Score=139.06 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=136.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC---------------cceEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSN---------------EPLISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 85 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~---------------~~~~~l-~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd 85 (485)
+++.....+++.|++|.=|++..+.. .++..- ++|.+.|.+++.|||+++|++++.|..|.|||
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~ 230 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWD 230 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEec
Confidence 44677889999999999999852110 011111 37999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011473 86 PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 86 ~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
.++.+. ++.+.+|...|.+++|-.....|.++|.|++|++|++.....+.++-+|...
T Consensus 231 ~~t~eh--------------v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------- 288 (479)
T KOG0299|consen 231 CDTLEH--------------VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------- 288 (479)
T ss_pred Ccccch--------------hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------
Confidence 988554 4449999999999999998889999999999999998776655555443322
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeecc
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQ 244 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~ 244 (485)
+..++.. .-++.+-+|..| .+++|.+. -+.--++.++++++.++.+
T Consensus 289 --v~~IdaL--------------------------~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~---- 335 (479)
T KOG0299|consen 289 --VLGIDAL--------------------------SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF---- 335 (479)
T ss_pred --eeeechh--------------------------cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE----
Confidence 2222221 233444455455 49999994 3333345556545554433
Q ss_pred CCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 245 GDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
-+..-|+||+.|+.|+||+--.
T Consensus 336 -------------------------In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 336 -------------------------INDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred -------------------------ecccceeeccCCceEEEeeecc
Confidence 2334489999999999998753
No 163
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=1.2e-13 Score=128.40 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=148.3
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCC-CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011473 56 HMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 56 h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
-...|.+|+|||. ..+++.+|.|++||+|+++. +.... .....|.++|.+++||.||..+++|+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------KAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-------------hhhhccCCCeEEEEEccCCceEEeecc
Confidence 4567999999994 45677899999999998865 22111 125668899999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCC--EEEEecC
Q 011473 134 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN--FLIYATL 211 (485)
Q Consensus 134 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~--~l~~~s~ 211 (485)
|+.+++||+.+++.. .+..|...+ .++.|=+... .|++||.
T Consensus 93 Dk~~k~wDL~S~Q~~-~v~~Hd~pv------------------------------------kt~~wv~~~~~~cl~TGSW 135 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVS-QVAAHDAPV------------------------------------KTCHWVPGMNYQCLVTGSW 135 (347)
T ss_pred CCceEEEEccCCCee-eeeecccce------------------------------------eEEEEecCCCcceeEeccc
Confidence 999999999999753 343333332 3445533333 8899998
Q ss_pred CC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 212 LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 212 ~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
|. +|.||...-+.+.++.-.+ |+-...+-. |. ++-|-.+..|.+|+-+
T Consensus 136 DKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv~~---------------------------pm-~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQLPE---RVYAADVLY---------------------------PM-AVVATAERHIAVYNLE 184 (347)
T ss_pred ccceeecccCCCCeeeeeeccc---eeeehhccC---------------------------ce-eEEEecCCcEEEEEcC
Confidence 86 9999999888888886644 644444322 22 3445567789999887
Q ss_pred CCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcC------
Q 011473 291 EPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNE------ 364 (485)
Q Consensus 291 ~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~------ 364 (485)
.|-+.-+ .+-. | .+ +..... .- - ...+.-.+..-.|++-|.--.+-.| ..||.=-|-..
T Consensus 185 n~~te~k-----~~~S--p-Lk-~Q~R~v-a~--f-~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 185 NPPTEFK-----RIES--P-LK-WQTRCV-AC--F-QDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVND 249 (347)
T ss_pred CCcchhh-----hhcC--c-cc-ceeeEE-EE--E-ecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCC
Confidence 6554421 1111 1 00 111100 00 0 0111126677789988888777666 77886555321
Q ss_pred -cc--CCceEEEEEeCcEEEecC
Q 011473 365 -YY--NNLIFHRVIKGFMIQTGD 384 (485)
Q Consensus 365 -~y--~g~~f~rv~~~~~iq~G~ 384 (485)
-| +.-.||-+---++-.|||
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred ceEEecceEeecccceEEEecCC
Confidence 23 345566543334444544
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=9.9e-14 Score=134.80 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=140.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
...+|+|||.|.+|++||+. +++|..++..|.+.|.++.|+|. ...|++||.|+++.+.|.+.-.. ....|.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~--~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk--- 327 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVD--TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWK--- 327 (463)
T ss_pred cceeEEecCCCceEEEEEcC--CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--cCceEE---
Confidence 34589999999999999998 89999999999999999999995 56899999999999999875111 111222
Q ss_pred CCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..+.|-.++|.|.. ..|.++..||++|-+|++. |++++++..|...|
T Consensus 328 ---------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I---------------------- 376 (463)
T KOG0270|consen 328 ---------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI---------------------- 376 (463)
T ss_pred ---------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc----------------------
Confidence 22458889999965 4667777899999999986 48888886544333
Q ss_pred hhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
++|+++..-. +|++++.++ +++|++...+.- ....|+.. .-.+.||+-.
T Consensus 377 --------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~--~~rl~c~~~~------------ 427 (463)
T KOG0270|consen 377 --------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFK--LGRLHCFALD------------ 427 (463)
T ss_pred --------------ceEEecCCCCcceeeccccceEEEEeecCCCCc-cccccccc--ccceeecccC------------
Confidence 4666665544 667777777 999998644321 11222211 1124555431
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
...+.++|.|..+..+++|+-.....+
T Consensus 428 ----------~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 428 ----------PDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ----------CCcceEEEecCccceEEEeecccChhH
Confidence 245778899999999999987654333
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.58 E-value=1.1e-14 Score=139.40 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=116.2
Q ss_pred EecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEE
Q 011473 53 KKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSI 130 (485)
Q Consensus 53 l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat 130 (485)
+.||+++|..++|+|- ...|||||.|.+|.+|.+-...+... ...++..|.+|...|-.++|+|.. +.|++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------LTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------cccceEEEeecceeEEEEeecccchhhHhh
Confidence 3489999999999995 45899999999999996643322221 135677899999999999999965 67899
Q ss_pred EeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec
Q 011473 131 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 210 (485)
Q Consensus 131 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s 210 (485)
+|.|.+|.+||+.||+.+-+++ | ...+.+++|+.+|.+|++.+
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-h------------------------------------pd~i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-H------------------------------------PDMVYSMSFNRDGSLLCTTC 192 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-C------------------------------------CCeEEEEEeccCCceeeeec
Confidence 9999999999999999876653 1 12346999999999999999
Q ss_pred CCC-eEEEEcccCeEEEeecccCCccceeeeeecc
Q 011473 211 LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQ 244 (485)
Q Consensus 211 ~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~ 244 (485)
.|. |+|||..+|+++..-.+|++. | -++++|-
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~-k-~~Raifl 225 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGA-K-PARAIFL 225 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCC-C-cceeEEe
Confidence 886 999999999999887777742 2 1335664
No 166
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=6.1e-15 Score=137.45 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=136.7
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCE
Q 011473 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 127 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~ 127 (485)
.+++.+.||+..|+.++-......+.++|.|.+.+||.+++ +.+|..+.+|.+.|++|.|+|.+.+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--------------g~CL~~Y~GH~GSVNsikfh~s~~L 204 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES--------------GACLATYTGHTGSVNSIKFHNSGLL 204 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeecc--------------ccceeeecccccceeeEEeccccce
Confidence 45667789999999999887777999999999999999988 5667779999999999999999999
Q ss_pred EEEEeCCCcEEEEECC----CCcE-----------EEEeccchhHHHhhhcCCCcccccccccccchhhhh-HhhhccCC
Q 011473 128 FSITSPDRRIRVFWFR----TGKL-----------RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE-KEIEKTET 191 (485)
Q Consensus 128 lat~s~D~~I~iwd~~----tg~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~-~~i~~~~~ 191 (485)
++++|.|++..||... ..+. +..-|++........ ...|.++.+- .++. ...
T Consensus 205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~-----------~sD~~tiRvPl~~lt-gH~ 272 (481)
T KOG0300|consen 205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSE-----------KSDGHTIRVPLMRLT-GHR 272 (481)
T ss_pred EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccc-----------ccCCceeeeeeeeee-ccc
Confidence 9999999999999621 1110 000011111110000 0011111110 0111 233
Q ss_pred CCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCC
Q 011473 192 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFS 270 (485)
Q Consensus 192 ~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (485)
..+....|=..|+.++++|.+. ..+||++||++++.+.||+.... -|. + -|
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt----Hcs----------t--------------Hp 324 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT----HCS----------T--------------HP 324 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc----ccc----------c--------------CC
Confidence 3455667888999999999986 89999999999999999983222 111 1 17
Q ss_pred CCeEEEeeecCceEEEEecCCC
Q 011473 271 DPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 271 d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
...|++|++.|.+|+||+-|+.
T Consensus 325 tQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cceEEEEeccCceeEeccchhh
Confidence 8899999999999999998854
No 167
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=5.7e-14 Score=129.99 Aligned_cols=202 Identities=16% Similarity=0.194 Sum_probs=138.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC-
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS- 102 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~- 102 (485)
.-|+++|..|-.||+-|+. ++.+-|+|.||+..|.+|.|+|..+ .|+++|.||.|++||++.-. ......+...
T Consensus 158 HcLiA~gtr~~~VrLCDi~--SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras--gcf~~lD~hn~ 233 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIA--SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS--GCFRVLDQHNT 233 (397)
T ss_pred ceEEEEecCCCcEEEEecc--CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc--ceeEEeecccC
Confidence 5578888889999999998 7889999999999999999999888 57899999999999986420 0000011111
Q ss_pred --CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 103 --DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 103 --~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
...+..-..|.+.|+.++|+.||.++++.+.|..+++|+...|+- ++.+. ..+. .+..
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g---~~~~---n~~~------------- 294 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG---PIIH---NQTT------------- 294 (397)
T ss_pred ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccc---cccc---cccc-------------
Confidence 111222345778899999999999999999999999999999874 22221 1111 0000
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
..-..+.--.++-|+.....+++-++++..|..++.+..|- |-+...+|++
T Consensus 295 ------------~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~---k~i~c~~~~~-------------- 345 (397)
T KOG4283|consen 295 ------------SFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL---KRINCAAYRP-------------- 345 (397)
T ss_pred ------------cceEEEeecccceEEEEecCCeEEEEEccCceEEEeeeccc---ceeeEEeecC--------------
Confidence 00001111123445555555668888888898888888874 4445556653
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
|=.-.-+|.-|+.||.|..
T Consensus 346 -----------~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 346 -----------DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -----------chhhhhccccCCccccccc
Confidence 3222467888999999988
No 168
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.4e-14 Score=132.42 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=123.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
..-+++|+-||.|+.+|++ ++ ....+..|..+|.|+.+++....++|+|+|++|++||++.-...
T Consensus 65 ~~~~~~G~~dg~vr~~Dln--~~-~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~------------ 129 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLN--TG-NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV------------ 129 (323)
T ss_pred CceEEEeccCceEEEEEec--CC-cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc------------
Confidence 4467888899999999997 33 33455689999999999999999999999999999999751111
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc-hhH-HHhhhcCC-Ccccccccccccchhh
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES-LEV-AQDLQRSD-APLYRLEAIDFGRRMA 181 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~-~~~-i~~~~~~~-~~~~~~~~~~~g~~~~ 181 (485)
..+.. ...|.++.. .|..|+.|+.|+.+.+||+++........++ ++. +.+++.-| ..-|.+.+. ..|++
T Consensus 130 --~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi--eGRVa 202 (323)
T KOG1036|consen 130 --GTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI--EGRVA 202 (323)
T ss_pred --ccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee--cceEE
Confidence 11222 226888777 4789999999999999999876543211111 110 11111111 111222222 11222
Q ss_pred hh----------------H--hhhc--cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 182 VE----------------K--EIEK--TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 182 ~~----------------~--~i~~--~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
+| . ...+ ....++++|+|+|--+++++|+.+| |.+||+++.+-++.+.+-+
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 21 0 0111 1235679999999999999999999 8999999988776665554
No 169
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.57 E-value=2.7e-14 Score=145.31 Aligned_cols=229 Identities=11% Similarity=0.138 Sum_probs=158.3
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcce-EE----------------------------------EecCCCCeEEEEEcCCCCE
Q 011473 27 LAISDRNSSFVHIYDARADSNEPL-IS----------------------------------KKVHMGPVKVMRYNPVFDT 71 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~-~~----------------------------------l~~h~~~V~~l~fspd~~~ 71 (485)
-++++|.|++||+||+...+...+ +. .-..+-.+.+++.||+|+.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 378889999999999863111000 00 0023567999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-CcE
Q 011473 72 VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DGKQFSITSPDRRIRVFWFRT-GKL 147 (485)
Q Consensus 72 l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp---dg~~lat~s~D~~I~iwd~~t-g~~ 147 (485)
||+|+.-|+++++|+...+.. ..+..|.+.|.|+.||- ..++||++|.|+.|+|||+.. -.+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~--------------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYT--------------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred ecccCccCceEEEEehhhhhh--------------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 999999999999998763332 23788999999999986 457899999999999999964 456
Q ss_pred EEEeccchhHHHhhhcCCCccc-ccccccccchhhhh------------HhhhccCCCCCceEEECCCCCEEEEecCCC-
Q 011473 148 RRVYDESLEVAQDLQRSDAPLY-RLEAIDFGRRMAVE------------KEIEKTETAPPSNAIFDESSNFLIYATLLG- 213 (485)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~------------~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~- 213 (485)
++++++|...|+.+.+....+. ++-+-.-.+.+... +.-......++-.++.+|+.+++++++.|.
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 7889998888877666543211 11110000000000 000111223446789999999999999886
Q ss_pred eEEEEcccCeEEEeecccCCc-cceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 214 IKIVNLHTNKVSRILGKVENN-DRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 214 i~v~d~~tg~~v~~~~~~~~~-~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
|+|+|+..|+.++.+.+..+. ...+.+.+ +|.+..+||...|.++-+|+--..
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~l--------------------------DPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVIL--------------------------DPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEE--------------------------CCCccEEEEeecCCceEEEEeccc
Confidence 999999999999999775422 12122211 388899999999999988876544
Q ss_pred CCC
Q 011473 293 EEP 295 (485)
Q Consensus 293 ~~~ 295 (485)
+-+
T Consensus 674 Ecv 676 (1080)
T KOG1408|consen 674 ECV 676 (1080)
T ss_pred hhh
Confidence 433
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.9e-13 Score=131.21 Aligned_cols=228 Identities=15% Similarity=0.218 Sum_probs=158.7
Q ss_pred eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCC
Q 011473 13 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
.+..++.+ |...++++++-|++++||.+.......++.+.--+.||.+++|+|+|. .+++++....+..||+++.++
T Consensus 215 ~I~sv~FH--p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 215 GITSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CceEEEec--CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 34444443 345577777799999999997445567787777788999999999999 899999999999999998765
Q ss_pred CCce--eE--------EEEcCCCceEEeec--------------------CCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011473 92 PESE--VS--------FRLKSDTNLFEILK--------------------SKTTVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 92 ~~~~--~~--------~~~~~~~~l~~~~~--------------------~~~~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.+-. +. |.+.-......+.| -.+.|..++|+.||+.|.+.+.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 4210 00 22111111111221 225688999999999999999999999999
Q ss_pred CCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 142 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 142 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
+++.+|++++... | ...-.+++-+++|.|||+||..| +.|||..
T Consensus 373 l~~~~~~~rf~D~----------------------G-------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 373 LRQNSCLHRFVDD----------------------G-------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred cCCcceEEEEeec----------------------C-------------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999888320 0 01124788899999999999999 7999843
Q ss_pred c------CeEEEeec----------c-------------cCCccceeee---eeccCCccCcc----eeeeecccccccc
Q 011473 221 T------NKVSRILG----------K-------------VENNDRFLRI---ALYQGDRSSKK----VRKIPAAAANANE 264 (485)
Q Consensus 221 t------g~~v~~~~----------~-------------~~~~~r~~~~---s~~~~~~~~~~----~~~~~~~~~~~~~ 264 (485)
+ -+.+.++. . .....|.+.+ ++|..+|.+++ +.++++
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF------- 490 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF------- 490 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe-------
Confidence 2 12222221 0 1113344433 57777776663 344444
Q ss_pred CCCCCCCCeEEEeeecCceEEEEe
Q 011473 265 SKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 265 ~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
.|.+.++|-|-+++|+.||-
T Consensus 491 ----SP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 491 ----SPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred ----cCCCceEEeecCCCceeeEe
Confidence 28899999999999999993
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.2e-14 Score=155.42 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=152.9
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC----CCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA----DSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSP 86 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~----~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~ 86 (485)
..+.|-.....+. -++++|.+||.|.+||... .....+.+...|+++|..|.|++... +||||+.||.|.|||+
T Consensus 68 ~kL~W~~~g~~~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred eeeeecccCCCcc-ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 4567766554444 4788899999999999752 12345677789999999999999766 9999999999999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
...+.|-. + + -..-...|.+++|+. ..+.||+++.++.+-|||++..+.+-.+.++
T Consensus 147 nn~~tP~~-----~--~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~----------- 203 (1049)
T KOG0307|consen 147 NKPETPFT-----P--G-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT----------- 203 (1049)
T ss_pred CCcCCCCC-----C--C-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-----------
Confidence 87554432 0 0 011235699999988 4577899999999999999877654333210
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCC----CeEEEEcc-cCeEEEeecccCCccceee
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLL----GIKIVNLH-TNKVSRILGKVENNDRFLR 239 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~----~i~v~d~~-tg~~v~~~~~~~~~~r~~~ 239 (485)
++| ..++.++|+|++- .|++++.+ .|++||++ ....++++.+|+.. .+.
T Consensus 204 -----------~~~------------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--ils 258 (1049)
T KOG0307|consen 204 -----------PGR------------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--ILS 258 (1049)
T ss_pred -----------CCc------------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc--eee
Confidence 111 2356889999987 56666654 38999976 45677888888732 122
Q ss_pred eeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCC
Q 011473 240 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 296 (485)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~ 296 (485)
+ .|...|+.+++|..+|+||++|+.+..+-+.
T Consensus 259 l-------------------------sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 259 L-------------------------SWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred e-------------------------ccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 2 3444899999999999999999987655553
No 172
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=9.2e-15 Score=138.57 Aligned_cols=151 Identities=19% Similarity=0.287 Sum_probs=121.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
...+|++++.|++|.|||++ ...+++.+.- ...-+.++|+|.+-.+++++.|..+..+|++.. .
T Consensus 199 ETsILas~~sDrsIvLyD~R--~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l-------------~ 262 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLR--QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL-------------S 262 (433)
T ss_pred cchheeeeccCCceEEEecc--cCCccceeee-eccccceecCccccceeeccccccceehhhhhh-------------c
Confidence 34477778789999999998 7777776642 234478899998889999999999999998753 5
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
+++..+.+|.+.|.+++|||.|+-|++||.|++||||.+..+..-.+|- -+|
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh------------------------tkR---- 314 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH------------------------TKR---- 314 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh------------------------Hhh----
Confidence 6677789999999999999999999999999999999998776532220 111
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
...+.++.||-|.+|+++||+++ |++|-..--+-+
T Consensus 315 -------Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 315 -------MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred -------hheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 22457999999999999999998 999987544433
No 173
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=3.9e-14 Score=146.75 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=122.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+...++++|++.+|.++.||.+ ...++.+++ -...+.++.++....+++.+-.|-.|++.|..|.+..+.
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~--~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~------- 571 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFK--KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE------- 571 (910)
T ss_pred cCCCceEEEccCcceEEEEecC--Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH-------
Confidence 4567789999999999999997 666777775 234678899999999999999999999999988666655
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
|.+|...+++++|||||++|++++.|++||+||+-||.++..+- +
T Consensus 572 -------f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~------------------v---------- 616 (910)
T KOG1539|consen 572 -------FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL------------------V---------- 616 (910)
T ss_pred -------hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe------------------c----------
Confidence 99999999999999999999999999999999999999986651 1
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNL 219 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~ 219 (485)
..+..++.|+|+|.|||+...+ ||.+|--
T Consensus 617 ---------d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 ---------DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ---------CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 1123589999999999999876 5999963
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=4.6e-13 Score=125.51 Aligned_cols=185 Identities=13% Similarity=0.172 Sum_probs=131.2
Q ss_pred CCCeEEEEEe--CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCC---eEEEEEcCCCCEEEEEeCCCcEE
Q 011473 10 IPGAVEWVYK--QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGP---VKVMRYNPVFDTVISADDKGIIE 82 (485)
Q Consensus 10 ~~~~~~~~~~--~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~---V~~l~fspd~~~l~s~s~dg~i~ 82 (485)
+.+.+||... +..|+..+.++.+.+.-|++||.- +++.-..+. .|... -.+|+|+|||.+|..+- ...|+
T Consensus 106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf--tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF--TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred EEEEEEeeeccccCCCccceeeeccccCceeeeecc--ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3467889753 345677778888899999999997 666555554 35443 45899999999988765 67999
Q ss_pred EEcC-CCCCCC-------C-----c-e---eE--------------------EEEcCCCceEEeecCCccEEEEEEcCCC
Q 011473 83 YWSP-HTLQFP-------E-----S-E---VS--------------------FRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 83 ~Wd~-~t~~~~-------~-----~-~---~~--------------------~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
++|+ +.+..- + . + +. |....+.+++.+-+|++.|+.+.|.+||
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9988 333211 0 0 0 00 2233466788888999999999999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEE--CC
Q 011473 126 KQFSITSP-DRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF--DE 201 (485)
Q Consensus 126 ~~lat~s~-D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~f--d~ 201 (485)
++|.+|+. |-.|-.||++..+. +.. +.++...+...|-| +|
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~-----------------------------------L~rhv~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYA-----------------------------------LERHVGDTNQRILFDLDP 307 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhh-----------------------------------hhhhccCccceEEEecCC
Confidence 99999985 88999999975432 111 11222223345555 79
Q ss_pred CCCEEEEecCCC-eEEEEccc-CeEEEeecccC
Q 011473 202 SSNFLIYATLLG-IKIVNLHT-NKVSRILGKVE 232 (485)
Q Consensus 202 ~g~~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~ 232 (485)
.|++|++|+.+| |++||+.+ |+.+..++.+.
T Consensus 308 ~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 308 KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 999999998887 99999987 77666665554
No 175
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.53 E-value=1.3e-13 Score=139.11 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=139.0
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCc----ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNE----PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~----~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
....+|+-+.+||.|.++|.+.-..+ .+..+..|...|..+.|-|...+|++++.|.++++||+++.++...
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~---- 137 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG---- 137 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc----
Confidence 35567777789999999998621112 1334458999999999999656899999999999999988655432
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcC-CCcccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS-DAPLYRLEAIDF 176 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 176 (485)
..+.+|...|-+++|.|+ ...|++|+.|+.|.|||++-.. +..+.+-...+...... +... ...
T Consensus 138 --------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~-~d~~e~~~~~~~~~~n~~ptps---kp~-- 203 (720)
T KOG0321|consen 138 --------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG-VDALEEFDNRIYGRHNTAPTPS---KPL-- 203 (720)
T ss_pred --------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc-hhhHHHHhhhhhccccCCCCCC---chh--
Confidence 137799999999999995 5688999999999999987544 11111111111111110 0000 000
Q ss_pred cchhhhhHhhhc-cCCCCCceEEECCCCCEEEEecC-CC-eEEEEcccCeEEEeecc------cCCccceeeeeeccCCc
Q 011473 177 GRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATL-LG-IKIVNLHTNKVSRILGK------VENNDRFLRIALYQGDR 247 (485)
Q Consensus 177 g~~~~~~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~tg~~v~~~~~------~~~~~r~~~~s~~~~~~ 247 (485)
-+|+. +-... .....+..+.|..|...||+++. |+ |||||+.+.......+. +..+.|++
T Consensus 204 ~kr~~--k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~--------- 272 (720)
T KOG0321|consen 204 KKRIR--KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV--------- 272 (720)
T ss_pred hcccc--ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee---------
Confidence 00000 00000 11111223666678899999887 66 99999988765422211 11111111
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
++..+-+ +...+.|+|+.. |++||+|+-+.
T Consensus 273 ---G~~nL~l----------DssGt~L~AsCt-D~sIy~ynm~s 302 (720)
T KOG0321|consen 273 ---GQVNLIL----------DSSGTYLFASCT-DNSIYFYNMRS 302 (720)
T ss_pred ---eeEEEEe----------cCCCCeEEEEec-CCcEEEEeccc
Confidence 1111111 124578899998 99999998764
No 176
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.4e-13 Score=124.53 Aligned_cols=193 Identities=13% Similarity=0.119 Sum_probs=138.0
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEcCCCCCC
Q 011473 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF--DTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~--~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
+.|.+. ..+.+|+|++-||.|.||.-..+.-+..+....|+..|++++|.|.. -+|+.++.||.|.+.+..+-..
T Consensus 62 v~wahP---k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 62 VAWAHP---KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred Eeeccc---ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 455543 26789999999999999987644445666777999999999999964 4889999999999985543100
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCC---C-----------CEEEEEeCCCcEEEEECCCCc--EEEEeccch
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD---G-----------KQFSITSPDRRIRVFWFRTGK--LRRVYDESL 155 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd---g-----------~~lat~s~D~~I~iwd~~tg~--~~~~~~~~~ 155 (485)
-+.-.....|.-.|++++|.|- | ++||+|+.|..|+||+..+++ +.+++.+|.
T Consensus 139 -----------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~ 207 (299)
T KOG1332|consen 139 -----------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK 207 (299)
T ss_pred -----------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence 0111224568888999999996 6 679999999999999998763 455688898
Q ss_pred hHHHhhhcCCCcccc---cccc-cccchhh---------hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 156 EVAQDLQRSDAPLYR---LEAI-DFGRRMA---------VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~---~~~~-~~g~~~~---------~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
..+...++.|..-+. +.+. ..|+.+. .+..+.+.....+++++||.+|++|+.+.-+. +.+|-..
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 889998888752111 1111 1121111 11233344555678999999999999988765 8999654
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.4e-12 Score=129.98 Aligned_cols=211 Identities=12% Similarity=0.133 Sum_probs=150.3
Q ss_pred CCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 8 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH-MGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
.|.|..+..+..+.. ...++ .+-.||.|.||++.. ..-+...+.+| ...|.+++|+ ++..|.|.+.+|.|.-||+
T Consensus 22 d~~Ps~I~slA~s~k-S~~lA-vsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHK-SNQLA-VSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeeccceEEEEEecc-CCcee-eeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 678877766655433 23344 455799999999972 34455666665 4589999999 5667889999999999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 166 (485)
.+ ..+++.+....+.+++++.+|.+..++.||.||.+..++...+++..... .
T Consensus 98 ~~--------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~--l----------- 150 (691)
T KOG2048|consen 98 HT--------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS--L----------- 150 (691)
T ss_pred cc--------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee--c-----------
Confidence 87 45666688888899999999999999999999988888888887643220 0
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCC----ccceeeee
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN----NDRFLRIA 241 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~----~~r~~~~s 241 (485)
+| ....+-+++|+|+|..|+.||.|| |++||..+++.++.+...-+ ....+..|
T Consensus 151 ----------~r-----------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 151 ----------MR-----------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred ----------cc-----------ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 00 011235899999999999999999 99999999988874322211 11222222
Q ss_pred eccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 242 LYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
+-. ..|+ .|+||-.-+.|.+|+....-+.
T Consensus 210 v~~------------------------Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 210 VLF------------------------LRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEE------------------------eecC-cEEEecCCceEEEEcccCcchh
Confidence 211 1343 3678888888999987655443
No 178
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=2.3e-13 Score=133.62 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=135.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC------CCc---
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF------PES--- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~------~~~--- 94 (485)
..+++++|+..++|+|||++ ..-+.+.+++|++.|++|.|+-...+||+++..|-|.+..+.+..- +..
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred cceeeeccCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 45789999999999999997 5566677889999999999999999999999999999986654322 111
Q ss_pred ---------------------eeEEEEcCCCceEEe-ecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 95 ---------------------EVSFRLKSDTNLFEI-LKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 ---------------------~~~~~~~~~~~l~~~-~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.-.|+.....+.+.+ ..|+++...|+|||. ...|++.+.|++|.+||+.+.+...++
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 112555555555444 468899999999995 467899999999999999876654433
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc-cCeEEEeec
Q 011473 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH-TNKVSRILG 229 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~-tg~~v~~~~ 229 (485)
. ...+..+++|.++|.+|+.|+..| |-.||+. +-..|.++-
T Consensus 248 ~-------------------------------------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 248 T-------------------------------------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred e-------------------------------------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 1 123567999999999999999988 8999987 456788888
Q ss_pred ccCCccc
Q 011473 230 KVENNDR 236 (485)
Q Consensus 230 ~~~~~~r 236 (485)
.|+..+.
T Consensus 291 ah~~sVt 297 (673)
T KOG4378|consen 291 AHDASVT 297 (673)
T ss_pred eccccee
Confidence 8875543
No 179
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.7e-13 Score=130.92 Aligned_cols=181 Identities=12% Similarity=0.107 Sum_probs=133.5
Q ss_pred CcceEEEEeCCCCeEEEEEcCC-------CCCcceEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEcCCCCCCCC
Q 011473 23 VKAGLAISDRNSSFVHIYDARA-------DSNEPLISKKVHMGPVKVMRYNPVF--DTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~-------~~~~~~~~l~~h~~~V~~l~fspd~--~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
.++.+++|||.||.|.+|++.. .+..+++.|..|+-+|+.+...+.+ ..++|+|.|.++++||+-.+.+..
T Consensus 133 ~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 133 DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 3778999999999999998631 1356889999999999999887754 589999999999999997754432
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EE----EEeccchhHHHhhhcCCCc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK--LR----RVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~--~~----~~~~~~~~~i~~~~~~~~~ 167 (485)
. + .-...+.+++++|-++.+.+|+.+|.|.+.++..-. .. +.+.++. ..
T Consensus 213 t--------------i-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~----------t~ 267 (476)
T KOG0646|consen 213 T--------------I-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN----------TQ 267 (476)
T ss_pred E--------------E-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc----------ce
Confidence 2 2 123568999999999999999999999999876433 11 1111100 00
Q ss_pred ccccccccccchhhhhHhhhccC-CCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeec
Q 011473 168 LYRLEAIDFGRRMAVEKEIEKTE-TAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALY 243 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~-~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~ 243 (485)
+.. +..+. .-.+++++.+-||..|++|+.+| ++|||+...+|+|++....+++..+++-+|
T Consensus 268 ~~~---------------~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 268 INV---------------LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eee---------------eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 000 00111 13568999999999999999998 999999999999999754445666665443
No 180
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.1e-12 Score=131.48 Aligned_cols=173 Identities=15% Similarity=0.226 Sum_probs=129.6
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
..+||. .+.-|.|.+-+|+|.-||+. +.+++..+..-.++|++++.+|.++.++.+..||.+.+.+....++
T Consensus 73 E~L~W~------e~~RLFS~g~sg~i~EwDl~--~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 73 ESLAWA------EGGRLFSSGLSGSITEWDLH--TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred eeEEEc------cCCeEEeecCCceEEEEecc--cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 345665 33455666689999999998 7888888888899999999999999999999999777777655332
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+|.. .|...++.|.+++|+|++.++|+||.|+.||+||..++..++..+.. +
T Consensus 145 -----~~~r-------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~----------------~ 196 (691)
T KOG2048|consen 145 -----TYKR-------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ----------------L 196 (691)
T ss_pred -----EEEe-------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec----------------c
Confidence 2211 24556788999999999999999999999999999999987644220 0
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCC
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN 233 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~ 233 (485)
+ .+.+.....++++.|=.++ .|++|-..| |++||...|.+++.+.-|..
T Consensus 197 d------------~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 197 D------------RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred c------------ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 0 0112234456888887554 466666655 99999999999877766653
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=7e-12 Score=115.32 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCcceEEEec-CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011473 36 FVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISA--DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~fspd~~~l~s~--s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
...||.++. ...+...+.- +.++|.+++|+|+++.++.+ ..++.|.+||++. ..+..+.
T Consensus 38 ~~~l~~~~~-~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------~~i~~~~-- 99 (194)
T PF08662_consen 38 EFELFYLNE-KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------KKIFSFG-- 99 (194)
T ss_pred eEEEEEEec-CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------cEeEeec--
Confidence 456666641 3445555553 45579999999999986544 4678999999852 2333343
Q ss_pred CccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhcc
Q 011473 113 KTTVSAIEVSPDGKQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 189 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~ 189 (485)
...+..+.|||+|++||+++.+ |.|.+||+++.+++.+++.
T Consensus 100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~------------------------------------ 143 (194)
T PF08662_consen 100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH------------------------------------ 143 (194)
T ss_pred CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc------------------------------------
Confidence 3567899999999999999854 5699999998888766522
Q ss_pred CCCCCceEEECCCCCEEEEecC-------CCeEEEEcccCeEEEeecc
Q 011473 190 ETAPPSNAIFDESSNFLIYATL-------LGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 190 ~~~~~~~i~fd~~g~~l~~~s~-------~~i~v~d~~tg~~v~~~~~ 230 (485)
.....++|||+|+||++++. .+++||+. +|+++.....
T Consensus 144 --~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 144 --SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred --CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecch
Confidence 11258899999999999874 36899997 5777765533
No 182
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.43 E-value=1.2e-12 Score=128.78 Aligned_cols=163 Identities=9% Similarity=0.058 Sum_probs=127.5
Q ss_pred EeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---
Q 011473 18 YKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--- 94 (485)
Q Consensus 18 ~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--- 94 (485)
...-+|+.+++.++..||.|+|||+. +...++.|+||...+.|+.+++||..|=|++-|.+||.||+++++.+..
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLh--nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLH--NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcc--cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence 34557889999999999999999998 7788999999999999999999999999999999999999988765432
Q ss_pred ----------------------eeEEEE-cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 95 ----------------------EVSFRL-KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 ----------------------~~~~~~-~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
..+|-+ .++.+-|.+.-|.+-|.++.|++.|++|++.+.|..+..|.+--|..+-..
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 001111 123344455567788999999999999999999999999988766654333
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEc
Q 011473 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 219 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~ 219 (485)
.| ..++.+...|-|.+||++||-+. ..||.+
T Consensus 672 kE-------------------------------------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KE-------------------------------------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc-------------------------------------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22 22345667777899999999874 566543
No 183
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.43 E-value=3.6e-12 Score=124.45 Aligned_cols=203 Identities=20% Similarity=0.252 Sum_probs=136.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
++.+++.. .=|...+||.+. .+.....+..|+..|.+|+++|.. .++||||.|++.+|||++...-.
T Consensus 291 ~~~vl~~~-~~G~f~~iD~R~-~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K---------- 358 (498)
T KOG4328|consen 291 SRSVLFGD-NVGNFNVIDLRT-DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK---------- 358 (498)
T ss_pred CccEEEee-cccceEEEEeec-CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC----------
Confidence 34444444 445889999983 334455567899999999999965 47899999999999999763211
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
..++.....|+..|.++.|||+|-.|+|-|.|..|||||.. |+-..++....| +|-. ..||.+.
T Consensus 359 ~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss---~~sa~~~p~~~I----------~Hn~--~t~RwlT- 422 (498)
T KOG4328|consen 359 ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS---CISAKDEPLGTI----------PHNN--RTGRWLT- 422 (498)
T ss_pred CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc---cccccCCcccee----------eccC--ccccccc-
Confidence 11344556799999999999988889999999999999974 332222211111 1111 1133221
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011473 183 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
.....|+|+-.++++|-.-. |.++|...++.+..+...+ .+ .+.+-
T Consensus 423 -----------~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~--~~--tI~~v------------------ 469 (498)
T KOG4328|consen 423 -----------PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE--SS--TIPSV------------------ 469 (498)
T ss_pred -----------chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc--cc--ccccc------------------
Confidence 13457999999999998754 9999999898776664443 11 11111
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 262 ANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 262 ~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.++.+.+-++++-+..-+.||+|+.+
T Consensus 470 ---n~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 470 ---NEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ---eeecccccceeccCCccceEEEEecC
Confidence 12223455677777779999999875
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=5.9e-12 Score=120.16 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=113.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEcCCCCCCCCceeEEE
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd~~~l~s~s--~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.+++|.- ...|+|||++ +-++++++. .|...+.++++|+.+.+++--+ ..|.|.+||+.+
T Consensus 98 ~RLvV~L--ee~IyIydI~--~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n----------- 162 (391)
T KOG2110|consen 98 KRLVVCL--EESIYIYDIK--DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN----------- 162 (391)
T ss_pred ceEEEEE--cccEEEEecc--cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-----------
Confidence 3444443 3449999998 778888876 4666787888887777887532 458999999876
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
-++...+..|++.+-+++|||||.+|||+|..|+ ||||.+.+|+.+..|......
T Consensus 163 ---l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~--------------------- 218 (391)
T KOG2110|consen 163 ---LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP--------------------- 218 (391)
T ss_pred ---ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee---------------------
Confidence 3344458899999999999999999999998885 899999999999888432211
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
..+.+++|+|+++||+..|..+ |+++-+.+-
T Consensus 219 -------------~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 219 -------------VSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -------------eEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 1235999999999999998865 999987653
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.42 E-value=6.5e-12 Score=128.15 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=92.2
Q ss_pred CCCcceEEEEeCCC-----CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCce
Q 011473 21 GDVKAGLAISDRNS-----SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE 95 (485)
Q Consensus 21 ~~~~~~l~vs~s~d-----~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~ 95 (485)
.+|++.+++|+... ..|++|+.. +-..+..|.+|+-.|+.++||||+++|+|+|+|+++.+|.........
T Consensus 533 ~s~~gnliASaCKS~~~ehAvI~lw~t~--~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-- 608 (764)
T KOG1063|consen 533 ISPTGNLIASACKSSLKEHAVIRLWNTA--NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-- 608 (764)
T ss_pred ecCCCCEEeehhhhCCccceEEEEEecc--chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh--
Confidence 36688899988653 369999986 566677899999999999999999999999999999999653221111
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011473 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg 145 (485)
+ .....+.|+..|.++.|+||+.+|||+|.|++|++|....+
T Consensus 609 --~------~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 609 --F------RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred --h------hhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 1 12226789999999999999999999999999999988776
No 186
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.41 E-value=3e-11 Score=119.32 Aligned_cols=192 Identities=18% Similarity=0.232 Sum_probs=135.8
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC-----CCCCCc--------
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-----LQFPES-------- 94 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t-----~~~~~~-------- 94 (485)
+++|..+|.|.||+.. +....+....|.+.|.+|....+|.+ +|++.|+.|..||-.- -++|..
T Consensus 260 viTgDS~G~i~Iw~~~--~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKG--TNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred EEeecCCceEEEEeCC--CceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 5677789999999985 55555555599999999999999875 5599999999997221 122211
Q ss_pred -----eeE-----EEEc---CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhh
Q 011473 95 -----EVS-----FRLK---SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL 161 (485)
Q Consensus 95 -----~~~-----~~~~---~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~ 161 (485)
.+. +-+. ...--....+|....+.++.+|+...|+|++.|+.+++|+ ..+++.+..
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--------- 405 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--------- 405 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE---------
Confidence 000 0000 0011123457888899999999999999999999999999 555554320
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeee
Q 011473 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI 240 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~ 240 (485)
...+..++.|+|+| .||.|+..| --+.|+++-.++..-...+ +...+.
T Consensus 406 ----------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~-~ls~v~- 454 (626)
T KOG2106|consen 406 ----------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNE-QLSVVR- 454 (626)
T ss_pred ----------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCC-ceEEEE-
Confidence 01123588999999 999999888 6888999977665443333 333222
Q ss_pred eeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 241 ALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
| .||+.+||-|+.|+.||||.-..
T Consensus 455 --y-------------------------sp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 455 --Y-------------------------SPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred --E-------------------------cCCCCEEEEecCCCeEEEEEECC
Confidence 2 28999999999999999996643
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.5e-12 Score=122.88 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=134.0
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.++.++++++.||++|||+++ +...+.....|.+.|.+|.|+|||+.|+|.+.| ..++|+.+++.+... +
T Consensus 154 ~~gs~latgg~dg~lRv~~~P--s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~------~- 223 (398)
T KOG0771|consen 154 GDGSKLATGGTDGTLRVWEWP--SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR------K- 223 (398)
T ss_pred CCCCEeeeccccceEEEEecC--cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh------c-
Confidence 456788888899999999986 555555666899999999999999999999999 999999998643322 1
Q ss_pred CCceEEeecCCccEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDG-----KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg-----~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
++ ....-....|.|+-|+ ..++.-..-+.|+.||+...+--.. +
T Consensus 224 -t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~--------------------------l 272 (398)
T KOG0771|consen 224 -TP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF--------------------------L 272 (398)
T ss_pred -CC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc--------------------------c
Confidence 11 1122234567888887 4444444567788887643221000 0
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc-cCCccceeeeeeccCCccCcceeee
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK-VENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~-~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
+ ..+.+ .....+++++.|++|+|++.|+++| |-+++..+-++++.... |...+. ---|
T Consensus 273 ~---~~~~~--~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT---~ltF------------ 332 (398)
T KOG0771|consen 273 R---LRKKI--KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVT---GLTF------------ 332 (398)
T ss_pred c---hhhhh--hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeee---eEEE------------
Confidence 0 00111 1122457999999999999999998 99999999998877654 442222 1122
Q ss_pred eccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 256 PAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.||...+++-+.|.+..+..-.-
T Consensus 333 -------------~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 -------------SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -------------cCCcCcccccccCCceeEEEEee
Confidence 27777788888888888886544
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.40 E-value=9.3e-12 Score=125.61 Aligned_cols=194 Identities=10% Similarity=0.100 Sum_probs=139.9
Q ss_pred eEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEE
Q 011473 50 LISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 128 (485)
Q Consensus 50 ~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~l 128 (485)
+..|.+|...|+.+.|+| +..+|++||.|..|+||.+-.+.-++ ...+-..+.+....|.++.|+|...-+
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~--------LSape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK--------LSAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc--------cCCcceeecCCceEEEEeecccCcCce
Confidence 445668999999999999 55689999999999999664221110 011222344555678999999976656
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEE
Q 011473 129 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 208 (485)
Q Consensus 129 at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~ 208 (485)
...+.-++++|||+.++|.+..+.+|...+ .+..|++||+.|++
T Consensus 144 l~s~a~g~v~i~D~stqk~~~el~~h~d~v------------------------------------QSa~WseDG~llat 187 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTAVELSGHTDKV------------------------------------QSADWSEDGKLLAT 187 (1012)
T ss_pred EEeccCceEEEEEcccCceeecccCCchhh------------------------------------hccccccCCceEee
Confidence 666778999999999999887776654443 47789999999999
Q ss_pred ecCCC-eEEEEcc-cCeEEEeecccCCccceeeeeeccC-----------------------CccCcceeeeecccccc-
Q 011473 209 ATLLG-IKIVNLH-TNKVSRILGKVENNDRFLRIALYQG-----------------------DRSSKKVRKIPAAAANA- 262 (485)
Q Consensus 209 ~s~~~-i~v~d~~-tg~~v~~~~~~~~~~r~~~~s~~~~-----------------------~~~~~~~~~~~~~~~~~- 262 (485)
++.+. |+|+|.. .++.+++.++|++ .|--. .+|-| ......+.+++++.+..
T Consensus 188 scKdkqirifDPRa~~~piQ~te~H~~-~rdsR-v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGv 265 (1012)
T KOG1445|consen 188 SCKDKQIRIFDPRASMEPIQTTEGHGG-MRDSR-VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGV 265 (1012)
T ss_pred ecCCcceEEeCCccCCCcccccccccc-chhhe-eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccce
Confidence 99876 9999987 4788888888873 22211 22221 11222467889999988
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 263 NESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+.+-++.....+|.+|.+++++|++.-
T Consensus 266 LiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 266 LIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred EeeeecCCCceEEEecCCcceEEEEEe
Confidence 444455344788999999999999854
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.40 E-value=8.4e-11 Score=118.13 Aligned_cols=186 Identities=20% Similarity=0.320 Sum_probs=134.7
Q ss_pred EEEE-eCCCCeEEEEEcCCCC-CcceEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 27 LAIS-DRNSSFVHIYDARADS-NEPLISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 27 l~vs-~s~d~~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.++. +..|+.+++||.. . ......+..|...|.+++|+|++..+++++. |+.+++|+..+ .
T Consensus 125 ~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 188 (466)
T COG2319 125 ILLASSSLDGTVKLWDLS--TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------G 188 (466)
T ss_pred EEeccCCCCccEEEEEec--CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--------------C
Confidence 4444 4449999999996 4 5777888899999999999999999999886 99999999876 3
Q ss_pred CceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEE-EeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRR-VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
..+..+.+|...|.+++|+|++. .+++++.|+.|++||..+++++. .+..+.
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~-------------------------- 242 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-------------------------- 242 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC--------------------------
Confidence 34455777999999999999998 55666899999999998888776 332211
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE-EEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV-SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~-v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
. . ....|++++.+++.++.++ +++|++..... +..+.+|.. ....+ .|.
T Consensus 243 ---------~-~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~-~~~--------------- 293 (466)
T COG2319 243 ---------D-S-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS--SVLSV-AFS--------------- 293 (466)
T ss_pred ---------c-c-eeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCc--cEEEE-EEC---------------
Confidence 0 0 1117999999888888887 99999986654 444423321 11111 111
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|++..+++++.|+.+.+|..+...
T Consensus 294 ----------~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 294 ----------PDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ----------CCCCEEEEeeCCCcEEEEEcCCCc
Confidence 455556668888889999554433
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.39 E-value=8.3e-12 Score=126.58 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=143.0
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC---CCc----eeEEEEcC----
Q 011473 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF---PES----EVSFRLKS---- 102 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~---~~~----~~~~~~~~---- 102 (485)
+..+.|||.+ .+..+.+|++|+..|.+|+|+.||+.++||+.|+.|.+|...--.. .++ +..|+--+
T Consensus 32 g~rlliyD~n--dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 32 GSRLLVYDTS--DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred CCEEEEEeCC--CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 4579999998 7889999999999999999999999999999999999996532111 110 11121110
Q ss_pred ----------CCceEEeecCC--ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---chhHHHhhhcCCCc
Q 011473 103 ----------DTNLFEILKSK--TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE---SLEVAQDLQRSDAP 167 (485)
Q Consensus 103 ----------~~~l~~~~~~~--~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~---~~~~i~~~~~~~~~ 167 (485)
..+-....+|+ ..+.+++|..||++||.|-.||+|.|-+- +|+.--.++. +...+..+++++..
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCC
Confidence 00011122333 45789999999999999999999999864 4544333322 33344445544431
Q ss_pred ccc----cccccccchhhhh----Hhhh--ccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccce
Q 011473 168 LYR----LEAIDFGRRMAVE----KEIE--KTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRF 237 (485)
Q Consensus 168 ~~~----~~~~~~g~~~~~~----~~i~--~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~ 237 (485)
--. +.-.+++..+..- ..|. +.-...-.++.|-++|.|++.|+.+++--+.+..|-.+.+++..+. ..
T Consensus 189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~--WI 266 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDS--WI 266 (1081)
T ss_pred CCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccce--eE
Confidence 100 1111222221110 0111 1112233689999999999999988754445667888888877552 22
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
..+.+ -|++..++-|-.|++|-+|+-
T Consensus 267 WtV~~--------------------------~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 267 WTVQA--------------------------KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEE--------------------------ccCCceEEEEEccCeeehhhh
Confidence 22222 178888999999999999854
No 191
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.1e-11 Score=122.65 Aligned_cols=233 Identities=15% Similarity=0.189 Sum_probs=152.0
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCC--------
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQF-------- 91 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~-------- 91 (485)
-+|.+..+++|++||+||||.+. ++.|++++.- .+.|.||+|+|.++ .++.+.....+.+-+..-+.-
T Consensus 408 vdp~G~wlasGsdDGtvriWEi~--TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 408 VDPSGEWLASGSDDGTVRIWEIA--TGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred ecCCcceeeecCCCCcEEEEEee--cceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 36788999999999999999998 8999998863 35899999999887 344444455565654432210
Q ss_pred ----------C-CceeEEEEcC----CCceEEeecCCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEecc
Q 011473 92 ----------P-ESEVSFRLKS----DTNLFEILKSKTTVSAIEVSPDGKQFSITSPD---RRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 92 ----------~-~~~~~~~~~~----~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D---~~I~iwd~~tg~~~~~~~~ 153 (485)
+ ...++|.-.. ...+...-.|...|..+.|+.+|.|||+.+.| ..|-|+++...+...-|.-
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k 564 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK 564 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh
Confidence 0 1123454321 12234556788899999999999999999865 4688888765543322221
Q ss_pred chhHHHhhhcCCC------------cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 154 SLEVAQDLQRSDA------------PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 154 ~~~~i~~~~~~~~------------~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
+-..+.+..+++. .+|++... ..+ +.+. .....+++++-+|.|.-|+.++.+. +..+|+.
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq-----elv-KkL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ-----ELV-KKLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred cCCceeEEEecCCCceEEEEeccceEEEehhHH-----HHH-HHHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 1122233333332 22322221 111 1111 2333567899999999999999998 6666775
Q ss_pred -cCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 221 -TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 221 -tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
..+..+++..|+..+|-+++ . +.=.|||||+.|+.+++|+..-
T Consensus 638 lsskPyk~lr~H~~avr~Va~---H-------------------------~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAF---H-------------------------KRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhh---c-------------------------cccceeeeecCCCcEEEEeeee
Confidence 34677888888866663322 1 3345799999999999999853
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=116.49 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=154.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCC-----Ccc-----eEEEe-cCCCCeEEEEE-------cCCCCEEEEEeCCCcEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADS-----NEP-----LISKK-VHMGPVKVMRY-------NPVFDTVISADDKGIIE 82 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~-----~~~-----~~~l~-~h~~~V~~l~f-------spd~~~l~s~s~dg~i~ 82 (485)
++|++.-+.+-+.|..+++|++..+- ..+ .-+++ .....|...+| -|+..++++.+.|.-|+
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 58899999999999999999986310 111 11111 11234555555 36778999999999999
Q ss_pred EEcCCCCCCCCceeEEEEcCCCceEEeecCC---ccEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEec------
Q 011473 83 YWSPHTLQFPESEVSFRLKSDTNLFEILKSK---TTVSAIEVSPDGKQFSITSPDRRIRVFWF-RTGKLRRVYD------ 152 (485)
Q Consensus 83 ~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~i~~spdg~~lat~s~D~~I~iwd~-~tg~~~~~~~------ 152 (485)
+||.-++++... | ..-.|. ....+++|||||.+|.+ +..+.||+||+ +.|+--..+.
T Consensus 137 ~wdaftG~lraS---y---------~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 137 LWDAFTGKLRAS---Y---------RAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeccccccccc---h---------hhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccc
Confidence 999999876554 1 111122 23578999999999765 67889999999 7776433331
Q ss_pred -cchhHHHhhhcCCCcccccccccccchhhhhHh-------hhccCCCCCceEEECCCCCEEEEecC--CCeEEEEccc-
Q 011473 153 -ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE-------IEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHT- 221 (485)
Q Consensus 153 -~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~-------i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~t- 221 (485)
+-...+++.+++|...--+.-..+|+++.+-.+ +.-....-+..+.|.++|+.|.+|+. +.|-.||+..
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 113346666777653322222334444433211 11133445689999999999999986 4699999974
Q ss_pred CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 222 NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 222 g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
++.|..++.|... -.++-+|.- +|++.+|+||..|+.|.+|....
T Consensus 284 ~~pv~~L~rhv~~--TNQRI~FDl-----------------------d~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 284 RDPVYALERHVGD--TNQRILFDL-----------------------DPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cchhhhhhhhccC--ccceEEEec-----------------------CCCCceeeccCCCccEEEEecCC
Confidence 6677777776531 123355542 48899999999999999998865
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=135.44 Aligned_cols=253 Identities=16% Similarity=0.142 Sum_probs=157.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+-.++.+++|++|..|+||.+. +..++.+..||.+.|+.++.+....+++++|.|..|++|.+.+
T Consensus 199 Drtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~------------- 263 (1113)
T KOG0644|consen 199 DRTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD------------- 263 (1113)
T ss_pred ccccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-------------
Confidence 4578899999999999999986 8899999999999999999999999999999999999998876
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-chh-----HHHhhhcCCCccccccccc
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE-SLE-----VAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~-~~~-----~i~~~~~~~~~~~~~~~~~ 175 (485)
+.++..+.+|++.|++|+|||-. +.+.|+++++||.+=. .+.+.. ... .+....+... ...+.
T Consensus 264 -~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~~----~~~f~ 332 (1113)
T KOG0644|consen 264 -GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFENN----GDRFL 332 (1113)
T ss_pred -CchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeecccc----ccccc
Confidence 45566699999999999999975 6689999999998711 111100 000 0000000000 00011
Q ss_pred ccchhh----hhHhhhccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc--
Q 011473 176 FGRRMA----VEKEIEKTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR-- 247 (485)
Q Consensus 176 ~g~~~~----~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~-- 247 (485)
.|++-. .|.++......-+.-+.++.+ ..+.+++-.+. +++|++.+|++++.+.+|......+-+--|+...
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 111100 011111111111111112111 13444444444 8999999999999998887544444333333200
Q ss_pred -----cCcce--------eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCC
Q 011473 248 -----SSKKV--------RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATK 300 (485)
Q Consensus 248 -----~~~~~--------~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~ 300 (485)
.+.-+ +..-..++.++......+|++-++..-.=+++||+..-+.+.++++..
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKY 478 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccccccc
Confidence 00000 000001122233344558888888888899999999999888876443
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=4e-11 Score=108.62 Aligned_cols=213 Identities=13% Similarity=0.207 Sum_probs=139.1
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCC--------CCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARA--------DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~--------~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
+.+|..++++.|+.+|+|-+..+++ ....++....+|.++|..++|+ ...|+||+ ||.|+=|.-+....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhh
Confidence 3467788899999999999998862 1123455567999999999998 45678877 49999884332211
Q ss_pred C-CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 92 P-ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 92 ~-~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
. ..+-.|+++.. .+.=.-.-..|+++.+.|....+..++.|+.++-||+++|+..++|.+|..++.+
T Consensus 94 s~~~K~lwe~~~P--~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~---------- 161 (325)
T KOG0649|consen 94 SLATKRLWEVKIP--MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS---------- 161 (325)
T ss_pred hccchhhhhhcCc--cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee----------
Confidence 1 00001222210 0000011134789999998888888889999999999999999999998877652
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccC
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSS 249 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~ 249 (485)
++--.....+++|+.|| +++||..|++++.+++--....+ +. .+-.+
T Consensus 162 --------------------------vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~-lR-----p~~g~ 209 (325)
T KOG0649|consen 162 --------------------------VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL-LR-----PDWGK 209 (325)
T ss_pred --------------------------eeecccCcceeecCCCccEEEEeccccceeEEeccccChhh-cC-----cccCc
Confidence 22211223467899988 99999999999999976542211 11 00000
Q ss_pred cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011473 250 KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
. +..+ .-+.-.+++|.+.. +-||+-|..+.
T Consensus 210 w-igal-------------a~~edWlvCGgGp~-lslwhLrsse~ 239 (325)
T KOG0649|consen 210 W-IGAL-------------AVNEDWLVCGGGPK-LSLWHLRSSES 239 (325)
T ss_pred e-eEEE-------------eccCceEEecCCCc-eeEEeccCCCc
Confidence 0 0111 14556777777765 88999886543
No 195
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-11 Score=121.68 Aligned_cols=246 Identities=12% Similarity=0.125 Sum_probs=166.6
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
..++|-+. +-.+.++.+.|..|++|.-....++ .++.+.+. .-.||+......++++++..+.|+|||++..
T Consensus 38 ~s~~w~~~----n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 38 FSFNWQRR----NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred eeeecccc----ceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 34556433 2356666678999999975421221 23333343 4456666666689999999999999999753
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc
Q 011473 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 169 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 169 (485)
.+.+ .+++|+..|+++.++-...++|+++..|-|.|..+.|+..-.+|..
T Consensus 112 l~hr--------------~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~---------------- 161 (673)
T KOG4378|consen 112 LIHR--------------FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI---------------- 161 (673)
T ss_pred HHhh--------------hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----------------
Confidence 3333 3889999999999999999999999999999999998876544421
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEE-ecCCC-eEEEEcccCeEEE-eecccCCccceeeeeeccCC
Q 011473 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY-ATLLG-IKIVNLHTNKVSR-ILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~-~s~~~-i~v~d~~tg~~v~-~~~~~~~~~r~~~~s~~~~~ 246 (485)
.....+.-+.|+|..++|+. ++++| +.+||+.....+. -...|..+.|-+ ||.
T Consensus 162 -------------------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi---cfs-- 217 (673)
T KOG4378|consen 162 -------------------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI---CFS-- 217 (673)
T ss_pred -------------------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc---eec--
Confidence 11112236789999997765 56677 8999997654432 223454444422 222
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccC
Q 011473 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTT 326 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~ 326 (485)
...+.||+|-.-|++||+|+-+..+.+ .|=.|....+. .+ =.
T Consensus 218 ----------------------psne~l~vsVG~Dkki~~yD~~s~~s~-----~~l~y~~Plst-----va------f~ 259 (673)
T KOG4378|consen 218 ----------------------PSNEALLVSVGYDKKINIYDIRSQAST-----DRLTYSHPLST-----VA------FS 259 (673)
T ss_pred ----------------------CCccceEEEecccceEEEeeccccccc-----ceeeecCCcce-----ee------ec
Confidence 267889999999999999998865555 23333322111 11 11
Q ss_pred CCCCEEEEEeCCeEE-EEEecCCCChHHHH
Q 011473 327 SLPDNVILHTTMGDI-HMKLYPEECPKTVE 355 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i-~i~L~~~~aP~~~~ 355 (485)
..+.++...++.|+| .-++....+|.+|.
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceEe
Confidence 355688889999985 45888889998875
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=1.7e-11 Score=113.56 Aligned_cols=214 Identities=12% Similarity=0.169 Sum_probs=145.2
Q ss_pred eecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEe-----cCCCCeEEEEEcC-CCCEEEEEe
Q 011473 5 IRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN--EPLISKK-----VHMGPVKVMRYNP-VFDTVISAD 76 (485)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~-----~h~~~V~~l~fsp-d~~~l~s~s 76 (485)
+.++|.+..+.|+..+.-..+.++++.+ ..+|+|.+..+.. .+...|. .|..|+++..|+. |-+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 5678889999999776434556777764 4699999852111 1222222 4678999999987 667999999
Q ss_pred CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccch
Q 011473 77 DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESL 155 (485)
Q Consensus 77 ~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~ 155 (485)
-|.+..+||++++.. ++---.+-.|...|..|+|+.+| ..||+.|.||.+|+||++.-+--..+-|..
T Consensus 171 iDTTCTiWdie~~~~-----------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS-----------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred ccCeEEEEEEeeccc-----------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence 999999999988521 11112267788999999999976 588999999999999998755433321211
Q ss_pred hHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC-CCEEEEecCC--CeEEEEcc-cCeEEEeeccc
Q 011473 156 EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES-SNFLIYATLL--GIKIVNLH-TNKVSRILGKV 231 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~--~i~v~d~~-tg~~v~~~~~~ 231 (485)
.. .. +...++|+++ =+|+++-.++ .|.+.|+. -+..+..+.+|
T Consensus 240 ~~-------~~--------------------------pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 240 SP-------ST--------------------------PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred CC-------CC--------------------------cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 00 11 1223444333 2366665554 38889987 46677888888
Q ss_pred CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 232 ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 232 ~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
++.+.-+. |..-.+.-|||+.+|++.-+|+-..
T Consensus 287 ~a~VNgIa---------------------------WaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 287 QASVNGIA---------------------------WAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cccccceE---------------------------ecCCCCceeeecCCcceEEEEeccc
Confidence 85544332 2234466799999999999998753
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=3.5e-12 Score=126.51 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=136.7
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---------e
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES---------E 95 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~---------~ 95 (485)
..++++. .||.+.|-.- .+...+.+..|.+.|.+-+|||||.-|+|++.||.|++|.- ++.+... +
T Consensus 76 d~~~i~s-~DGkf~il~k---~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICS-NDGRFVILNK---SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEc-CCceEEEecc---cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 3455544 6899988764 46667778899999999999999999999999999999942 2222110 1
Q ss_pred eEEE------------------EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH
Q 011473 96 VSFR------------------LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 157 (485)
Q Consensus 96 ~~~~------------------~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~ 157 (485)
+.|. ++....+..++.|.+.|.++.|+|....+++|+.|...+|||- -|..+.+-..|..+
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 1122 2223344567889999999999999999999999999999996 56666666677778
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 213 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~ 213 (485)
|+.++|.|..+|.+++...-| +.+.....+..++||+||..++.|+..|
T Consensus 230 ITSva~npd~~~~v~S~nt~R-------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 230 ITSVAFNPEKDYLLWSYNTAR-------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeeccccceeeeeeeeee-------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 999999999888888775444 4455666788999999999999999877
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=2.6e-11 Score=115.87 Aligned_cols=106 Identities=20% Similarity=0.379 Sum_probs=87.3
Q ss_pred ceEEEEeC-CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE-EEEcCCCCCCCCceeEEEEcC
Q 011473 25 AGLAISDR-NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGII-EYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 25 ~~l~vs~s-~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i-~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+++.=++ ..|.|+|||+. +.+++.++..|++++-+|+|||+|.+|||+|..|+| |++.+.+
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~--nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------------- 205 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTI--NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------------- 205 (391)
T ss_pred ceEEecCCCCCceEEEEEcc--cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------------
Confidence 34444333 46899999997 788899999999999999999999999999999865 7777755
Q ss_pred CCceEEeecCC--ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011473 103 DTNLFEILKSK--TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 103 ~~~l~~~~~~~--~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
++.+++|+... ..+.+++||||+++|++.|.-++|+||.+++-.
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 55666676654 457899999999999999999999999887544
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=116.30 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=147.4
Q ss_pred EEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCC---
Q 011473 15 EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHT--- 88 (485)
Q Consensus 15 ~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t--- 88 (485)
.+-.....+.+.-+.-+-.-|.|.+.|.....-..+.... -.+..|+|+.|-|.++ .++.+-.+|.+.++|.+-
T Consensus 175 dfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 175 DFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred cccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 3333344445544444445678888886511101111111 2457899999999654 666677899999996531
Q ss_pred -----CCCCCc-----eeEEEEc-CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH
Q 011473 89 -----LQFPES-----EVSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV 157 (485)
Q Consensus 89 -----~~~~~~-----~~~~~~~-~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~ 157 (485)
++.++. ...+..+ ...++..+...+..+...+|||||++||+.|.|+.+||||+.+.+++..+.
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----- 329 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK----- 329 (636)
T ss_pred CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-----
Confidence 111111 0111112 224566666666789999999999999999999999999998877643220
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
..-.-..+++|||||+||++|+.|- +.||....+++|..=.+|..-+.
T Consensus 330 -------------------------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 330 -------------------------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred -------------------------------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 1111235999999999999999876 99999999999988888874344
Q ss_pred eeeeeeccCCccCcc----eeeeeccc-------------ccc--ccCCCC--CCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 237 FLRIALYQGDRSSKK----VRKIPAAA-------------ANA--NESKEP--FSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 237 ~~~~s~~~~~~~~~~----~~~~~~~~-------------~~~--~~~~~~--~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.++|.-|-.. ..+. ..+.++.. +.. .....+ ....-.|.|.+.|.++-||+-.+..+.
T Consensus 379 ~VaFDpytt~-~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 379 VVAFDPYTTS-TEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred eEeecccccc-cccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 4444322110 0000 00000000 000 011111 123456889999999999988765444
No 200
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=1e-11 Score=123.50 Aligned_cols=137 Identities=13% Similarity=0.201 Sum_probs=102.3
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC--------------CC------------CcceEEEecCCCCeEEEEE
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--------------DS------------NEPLISKKVHMGPVKVMRY 65 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~--------------~~------------~~~~~~l~~h~~~V~~l~f 65 (485)
.|+.|+..+ +.+++++ -.+|..++||... ++ ..++..+.--.+.|+..+|
T Consensus 223 T~ikWvpg~---~~~Fl~a-~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 223 TCIKWVPGS---DSLFLVA-HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred EEEEEEeCC---CceEEEE-EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 567888663 3344444 3678899997531 00 0122222223457888999
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011473 66 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 66 spd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg 145 (485)
+|||++||+.|.||.+||+|..+.++... ++.--+...|++|||||+++|+|++|--|.||.+..+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~--------------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGV--------------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHH--------------HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 99999999999999999998876544332 3333456899999999999999999999999999999
Q ss_pred cEEEEeccchhHHHhhhcCCC
Q 011473 146 KLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~ 166 (485)
+++..=.+|-..++.+++++.
T Consensus 365 RVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred eEEEeccccccceeeEeeccc
Confidence 999888888888888888763
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=8.7e-11 Score=111.21 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=111.9
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.++.+-..|+|+|||.. +++.+..+++|...++.++|.. ....+.||+.||+|++||+++....
T Consensus 42 ~vav~lSngsv~lyd~~--tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------------ 107 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG--TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------------ 107 (376)
T ss_pred eEEEEecCCeEEEEecc--chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh------------
Confidence 34444468999999986 7889999999999999999987 4568999999999999999874322
Q ss_pred ceEEeecCC-ccEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 105 NLFEILKSK-TTVSAIEVSPDGKQFSITS----PDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 105 ~l~~~~~~~-~~v~~i~~spdg~~lat~s----~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
....+..+. .+..|++..-.++.+++|. .|-.+.+||++..+. ++.|.+
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e------------------------- 162 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE------------------------- 162 (376)
T ss_pred hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-------------------------
Confidence 222344444 4567777777888888886 477899999998765 544432
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccC
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg 222 (485)
.+..-++++.|.|+.. .|++||.+| +.|+|+...
T Consensus 163 ----------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 163 ----------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ----------hccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 1222346889998876 899999999 899998643
No 202
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.33 E-value=1e-11 Score=126.80 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=98.8
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011473 51 ISKKVHMGPVKVMRYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 51 ~~l~~h~~~V~~l~fspd~~~l~s~s~d-----g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
+.|-||.-.|.+++.||+++++||+... ..|++|+..+.... +.+.+|.-.|+.++|||||
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~--------------~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV--------------QELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh--------------heecccceEEEEEEECCCC
Confidence 4456999999999999999999998654 47889988764332 3488999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCE
Q 011473 126 KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 205 (485)
Q Consensus 126 ~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~ 205 (485)
++|++.|.|+++.+|........ +.+++. .+.+...++...|+|++++
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~----------------------------e~~fa~----~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKD----------------------------EFRFAC----LKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred cEEEEeecCceEEeeeeecccch----------------------------hhhhcc----ccccceEEEEcccCcccce
Confidence 99999999999999986432210 111111 1234455689999999999
Q ss_pred EEEecCCC-eEEEEcccC
Q 011473 206 LIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 206 l~~~s~~~-i~v~d~~tg 222 (485)
++++|.|. +++|....+
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 99999986 999998876
No 203
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.1e-12 Score=136.26 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=135.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEE-e-cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISK-K-VHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l-~-~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+++||++||.|.|||++ ..+.-.++ . .-.+.|.+|+|+..- ..|+|++.+|.+-|||++.
T Consensus 128 q~nlLASGa~~geI~iWDln--n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------------ 193 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLN--KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------------ 193 (1049)
T ss_pred CCceeeccCCCCcEEEeccC--CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------------
Confidence 44589999999999999997 22222222 1 245789999999865 4788999999999999975
Q ss_pred cCCCceEEeecCC--ccEEEEEEcCCC-CEEEEEeCC---CcEEEEECCCCc-EEEEeccchhHHHhhhcCCCccccccc
Q 011473 101 KSDTNLFEILKSK--TTVSAIEVSPDG-KQFSITSPD---RRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 101 ~~~~~l~~~~~~~--~~v~~i~~spdg-~~lat~s~D---~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
..++..+..+. ..+..++|+||. ..+++++.| -.|.+||++--. -++++..|.+
T Consensus 194 --~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~----------------- 254 (1049)
T KOG0307|consen 194 --KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR----------------- 254 (1049)
T ss_pred --CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-----------------
Confidence 23343344333 347889999976 566777754 379999986422 2333333222
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCC-CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g-~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
-+.++.|++.+ ++|++++-|+ |-+|+..||+++..+.... .. +|
T Consensus 255 -------------------GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW-----~f-------- 300 (1049)
T KOG0307|consen 255 -------------------GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NW-----CF-------- 300 (1049)
T ss_pred -------------------ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cc-----ee--------
Confidence 23478888888 7888888887 9999999999998886632 11 11
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+.+|...+|.+|+.++=|++|-||+.....
T Consensus 301 ------------dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 ------------DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 123445789999999999999999987543
No 204
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=2e-10 Score=115.41 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=142.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc-ceEEEecCCC-CeEEEEE-cCCCC-EEEEEeC-CCcEEEEcCCCCCCCCcee
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNE-PLISKKVHMG-PVKVMRY-NPVFD-TVISADD-KGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~-~~~~l~~h~~-~V~~l~f-spd~~-~l~s~s~-dg~i~~Wd~~t~~~~~~~~ 96 (485)
.+.+..++.++.|+.+.+|+.. ... .+..+.++.. .+..+.+ ++++. .++..+. |+.+++||....
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------- 144 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLD--NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP------- 144 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcC--CCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC-------
Confidence 3456667777789999999986 333 6677776443 7888887 88888 5565555 999999998640
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011473 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
......+..|...|.+++|+|+++.+++++. |+.+++|++.+++.+..+..|
T Consensus 145 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 197 (466)
T COG2319 145 ------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--------------------- 197 (466)
T ss_pred ------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC---------------------
Confidence 1334457889999999999999999999886 999999999998877776431
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeEEE-eecccCCccceeeeeeccCCccCcce
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSR-ILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~v~-~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
...+..++|+|+++ +++.++.++ |++||..+++++. .+.+|.... +.+|.
T Consensus 198 ---------------~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~-------- 250 (466)
T COG2319 198 ---------------TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV----VSSFS-------- 250 (466)
T ss_pred ---------------CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce----eEeEC--------
Confidence 12345888999998 555546666 8999998888887 576665221 11332
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
++..++++++.|+.+++|+.+...
T Consensus 251 -----------------~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 251 -----------------PDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred -----------------CCCCEEEEecCCCcEEEeeecCCC
Confidence 555677799999999999887544
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.31 E-value=2.3e-11 Score=117.40 Aligned_cols=157 Identities=15% Similarity=0.284 Sum_probs=107.8
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCc--eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011473 57 MGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPES--EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 57 ~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~--~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
..+|.++.|.+... .++||+.|..|++|-++..+-... .+.| +..+..|...|+++.|+|+|..||+|+.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y-------~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY-------LSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE-------eecccCCcceeEEEEEcCCcCeeeecCC
Confidence 45899999999776 999999999999996654333221 1222 2347889999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC
Q 011473 134 DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG 213 (485)
Q Consensus 134 D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~ 213 (485)
++.|.+|-... .+..+... +.+.. ...|... +.+ ......+-.++|+|+++|+++++.+.
T Consensus 86 ~g~v~lWk~~~---~~~~~~d~----e~~~~-ke~w~v~-----------k~l-r~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 86 GGEVFLWKQGD---VRIFDADT----EADLN-KEKWVVK-----------KVL-RGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred CceEEEEEecC---cCCccccc----hhhhC-ccceEEE-----------EEe-cccccchhhhhccCCCceeeeeeccc
Confidence 99999997653 11111000 00000 0000000 001 11222345789999999999999986
Q ss_pred -eEEEEcccCeEEEeecccCCccceeeeeec
Q 011473 214 -IKIVNLHTNKVSRILGKVENNDRFLRIALY 243 (485)
Q Consensus 214 -i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~ 243 (485)
+++||+..|+++..+.+|+ -+++..++
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~---~yvqgvaw 173 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHE---HYVQGVAW 173 (434)
T ss_pred eEEEEEeccceeEeeccccc---cccceeec
Confidence 9999999999999999988 34554444
No 206
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.30 E-value=7.3e-11 Score=109.34 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=133.5
Q ss_pred CCcceEEEEeCCC-------CeEEEEEcCCCC-------CcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 22 DVKAGLAISDRNS-------SFVHIYDARADS-------NEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 22 ~~~~~l~vs~s~d-------~~I~iwd~~~~~-------~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
..+++++++...+ -.+-||.+..+- .+++..|. .|-+.|.||.|.|++..|++.. |..|.+|++
T Consensus 73 P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l 151 (370)
T KOG1007|consen 73 PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSL 151 (370)
T ss_pred CCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEc
Confidence 3366677766442 257899986321 23444555 5667999999999999999887 789999988
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP--DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 164 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp--dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 164 (485)
+...-... .++... -..+....++-+||| ||+.+++. .|++++.||++|.++...+..
T Consensus 152 ~ess~~va----ev~ss~----s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d----------- 211 (370)
T KOG1007|consen 152 DESSKIVA----EVLSSE----SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED----------- 211 (370)
T ss_pred ccCcchhe----eecccc----cccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh-----------
Confidence 76432111 011000 112445578889999 89998884 599999999999887655522
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcc-cCeEEEeecccCCccceeeee
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLH-TNKVSRILGKVENNDRFLRIA 241 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~-tg~~v~~~~~~~~~~r~~~~s 241 (485)
.....+..+.|.|+-+ +|++|++++ ||+||.. +...|..+.+|..-+..+.
T Consensus 212 ------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR-- 265 (370)
T KOG1007|consen 212 ------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR-- 265 (370)
T ss_pred ------------------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE--
Confidence 1112234778999988 556667777 9999987 4567888888873233222
Q ss_pred eccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 242 LYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
|+ ..-..||.||+.|.++-||-..
T Consensus 266 -fn------------------------~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 266 -FN------------------------PEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred -ec------------------------CccceEEEecCCCceeEEEecc
Confidence 22 1346789999999999999764
No 207
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.30 E-value=9.4e-11 Score=110.43 Aligned_cols=163 Identities=14% Similarity=0.121 Sum_probs=123.3
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCC-cceEEEe--cCCCCeEEEEEcCCCC----EEEEEeCCCcEEEEcC
Q 011473 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLISKK--VHMGPVKVMRYNPVFD----TVISADDKGIIEYWSP 86 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~-~~~~~l~--~h~~~V~~l~fspd~~----~l~s~s~dg~i~~Wd~ 86 (485)
+.|-...+-...+++++.+ ...+.||....+.+ ..+++.. .|...-.-++|+-|.. ++|.++.-|.|++-|+
T Consensus 44 v~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~ 122 (385)
T KOG1034|consen 44 VAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV 122 (385)
T ss_pred eeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEec
Confidence 4444334444556666664 46799998863221 3344443 3677778888976543 7888899999999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
.+.++... +.+|...|+.|.|.|+. ++++++|.|..||+||++++.|+..+.+
T Consensus 123 ~~~~~~~~--------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------ 176 (385)
T KOG1034|consen 123 VSGQCSKN--------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------ 176 (385)
T ss_pred chhhhccc--------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc------------
Confidence 88666655 89999999999999965 7889999999999999999999998843
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV 224 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~ 224 (485)
...+...+-++.||++|.+|+++++|. +++|++.+-+.
T Consensus 177 ---------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 177 ---------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred ---------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 012233456999999999999999986 99999985543
No 208
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.3e-10 Score=108.64 Aligned_cols=202 Identities=13% Similarity=0.129 Sum_probs=132.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC--CCCEEEEEe
Q 011473 55 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP--DGKQFSITS 132 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp--dg~~lat~s 132 (485)
+|..-|+++.|.+.|+.+|+||.|++++|||.+... . .|. +....+.|.+.|..+.|.+ -|+.+|++|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~--~W~-----~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---G--TWS-----CTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---C--ceE-----EeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 899999999999999999999999999999853311 0 021 2234788999999999976 599999999
Q ss_pred CCCcEEEEECC--C----C---cEEEEeccchhHHHhhhcCCC---------------cccccccccccchhhhhHhhhc
Q 011473 133 PDRRIRVFWFR--T----G---KLRRVYDESLEVAQDLQRSDA---------------PLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 133 ~D~~I~iwd~~--t----g---~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
.|++++||.=. + | ....++..+-..+..++|.|. .+|.......-++..+..|++.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999999742 1 1 122344444444555555443 2233222222233334455552
Q ss_pred ------cCCCCCceEEECCCC---CEEEEecCC------CeEEEEccc-C-eE--EEeecccCCccceeeeeeccCCccC
Q 011473 189 ------TETAPPSNAIFDESS---NFLIYATLL------GIKIVNLHT-N-KV--SRILGKVENNDRFLRIALYQGDRSS 249 (485)
Q Consensus 189 ------~~~~~~~~i~fd~~g---~~l~~~s~~------~i~v~d~~t-g-~~--v~~~~~~~~~~r~~~~s~~~~~~~~ 249 (485)
....+..++.|+|+. .+|+.|++. .++||.-.. + +. +..+.+|..++|-+.++---|
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G---- 236 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG---- 236 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC----
Confidence 123345688898653 388999886 578885432 2 33 344556666677555543222
Q ss_pred cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 250 KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.+--+||+|.+|+ |+||+-+.
T Consensus 237 --------------------r~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 237 --------------------RSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred --------------------CceeeEEEeecCc-EEEEEEee
Confidence 4567899999999 99998753
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.4e-10 Score=120.26 Aligned_cols=183 Identities=10% Similarity=0.054 Sum_probs=117.9
Q ss_pred CCCCcceEEEEeCC---CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEE--cCCCCCCCC
Q 011473 20 QGDVKAGLAISDRN---SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDKGIIEYW--SPHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs~s~---d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~-s~dg~i~~W--d~~t~~~~~ 93 (485)
.++|++..++..+. +..|++||+..+..+.+..+.+|. .+++|+|||+.|+.+ +.+|.+.|| |+.++
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---- 282 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGG---- 282 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCC----
Confidence 34677766665543 247999999722223344444543 468999999988765 478887777 55432
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-cEEEEeccchhHHHhhhcCCCccccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
.+..+..+...+.+.+|||||++|+..+ .++..+||++... ...+.+.
T Consensus 283 -----------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~------------------- 332 (429)
T PRK01742 283 -----------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG------------------- 332 (429)
T ss_pred -----------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-------------------
Confidence 2333555666788899999999887666 5788888876432 1111110
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
... .+..|+|+|++|++.+.+.+-+||+.+|+......... . . . -.|
T Consensus 333 -----------------~~~---~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~-~-~--~-~~~-------- 379 (429)
T PRK01742 333 -----------------GRG---YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFL-D-E--S-PSI-------- 379 (429)
T ss_pred -----------------CCC---CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCC-C-C--C-ceE--------
Confidence 000 14579999999999888888889999887643322211 0 0 0 001
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.||+.+|+.++.++..++|.-
T Consensus 380 -----------------sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 380 -----------------SPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -----------------CCCCCEEEEEEcCCCceEEEE
Confidence 289989999988887777753
No 210
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.28 E-value=4.1e-10 Score=111.41 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=141.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.|...++++++.|+.++||+ ..+++.+.. -..++.|+.|+|.| .+|.+...|...+.|.++.
T Consensus 377 hps~~q~~T~gqdk~v~lW~----~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~------------ 438 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN----DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ------------ 438 (626)
T ss_pred CCChhheeeccCcceEEEcc----CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc------------
Confidence 34455677888999999998 245555543 34688999999999 8999999998888888762
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
++..+.....++++++|||||.+||.|+.|+.|+||-+..+. .+..+.
T Consensus 439 ---~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~---------------------------- 487 (626)
T KOG2106|consen 439 ---DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG---------------------------- 487 (626)
T ss_pred ---eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee----------------------------
Confidence 333344457889999999999999999999999999887544 322221
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc--------------cCeEE---EeecccCC-cc------
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH--------------TNKVS---RILGKVEN-ND------ 235 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~--------------tg~~v---~~~~~~~~-~~------ 235 (485)
+....++..+.||+|++||.+-|-+- |-.|... |.+|. .++++..+ .+
T Consensus 488 -------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs 560 (626)
T KOG2106|consen 488 -------KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARS 560 (626)
T ss_pred -------eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhh
Confidence 12224567899999999999988764 7777432 22222 12222111 01
Q ss_pred ----------ceeeeeeccCCccCcceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 236 ----------RFLRIALYQGDRSSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 236 ----------r~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
.|-.+-+|+-...+...-..++.++.. ........|..++.|| +|..|..|.
T Consensus 561 ~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg-~D~Si~qW~ 624 (626)
T KOG2106|consen 561 HCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG-KDTSIMQWR 624 (626)
T ss_pred hhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC-CCceEEEEE
Confidence 111222454433444455556665555 3445556889999888 999999994
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.9e-10 Score=114.77 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=118.5
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+..++.+|+|||+|-.+.|||.- ..++++.+. ||...|.++.|-|. .++++||..|..|+++|+...+-...
T Consensus 58 Wn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~--- 132 (758)
T KOG1310|consen 58 WNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM--- 132 (758)
T ss_pred ecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc---
Confidence 35678899999999999999986 678888886 99999999999994 46899999999999999875222110
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+-...+.+..+..|...|-.|+-.|++ ..|-+++.||+||-+|++.... -...+-+...+. |.
T Consensus 133 -d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n---------y~----- 197 (758)
T KOG1310|consen 133 -DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN---------YN----- 197 (758)
T ss_pred -ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH---------hc-----
Confidence 001123445577888899999999999 8899999999999999986331 111111111000 00
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEc
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNL 219 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~ 219 (485)
..-....++..+|+.. +|++|+.+- .+++|.
T Consensus 198 -------------~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 198 -------------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred -------------hhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 0001224777788766 788888876 899995
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.26 E-value=3.9e-11 Score=109.92 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=111.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC--------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC--CCCC
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSN--------EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH--TLQF 91 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~--------~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~--t~~~ 91 (485)
.....+++.|.++|.|-+||+..++. +.......|..+|.+|.|.+.-..=++++.+..+-.|.++ ++.+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 34567888999999999999972210 2222334799999999999877777888888888888543 2222
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+.. ..+.-....|..+.+-||++.|||++.|+.||||..+++..+.++.-
T Consensus 242 q~~------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky------------------ 291 (323)
T KOG0322|consen 242 QIR------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY------------------ 291 (323)
T ss_pred ccc------------ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh------------------
Confidence 211 01222234578899999999999999999999999999887655421
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEc
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 219 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~ 219 (485)
+...+++++|+|+...++.++.|+ |-+|++
T Consensus 292 ------------------Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 ------------------HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------------hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 123457999999999999999997 999986
No 213
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.23 E-value=3.3e-10 Score=104.21 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=79.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeEEEEc
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
...++.|..+..|.+||++ .+++.++ +..+++.+.|||+|++|+.++.+ |.|.+||.++.+.
T Consensus 73 ~favi~g~~~~~v~lyd~~---~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~---------- 137 (194)
T PF08662_consen 73 EFAVIYGSMPAKVTLYDVK---GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK---------- 137 (194)
T ss_pred EEEEEEccCCcccEEEcCc---ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE----------
Confidence 3345556667899999995 5666666 45678899999999999998754 6699999976332
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEe
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSP------DRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~------D~~I~iwd~~tg~~~~~~ 151 (485)
+..+. | ..+..++|||||++|+++.. |..++||+. +|+++...
T Consensus 138 ----i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 138 ----ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ----eeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 22222 2 34789999999999999874 789999998 68876654
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.1e-09 Score=99.45 Aligned_cols=161 Identities=13% Similarity=0.174 Sum_probs=112.3
Q ss_pred eEEEEeCCCCeEEEEEcCCCCC----cceEEE--ecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 26 GLAISDRNSSFVHIYDARADSN----EPLISK--KVHM-----GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~----~~~~~l--~~h~-----~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
.++++++ ||.|+=|..+.... +++..+ +.|. -.|+++-..|..+-++.++.|+.+.-||++++++.+
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r- 150 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR- 150 (325)
T ss_pred hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-
Confidence 3556664 69999998762111 112111 1333 358899999988888888899999999999965544
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
++++|+..+.+++--.....+.+|+.||++||||.+|+|++.++.. ...+. ..-.
T Consensus 151 -------------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~--------yk~~~----~lRp 205 (325)
T KOG0649|consen 151 -------------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP--------YKNPN----LLRP 205 (325)
T ss_pred -------------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc--------ccChh----hcCc
Confidence 4999999999999855555678999999999999999999988732 00000 0000
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeec
Q 011473 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~ 229 (485)
+.|+ +-.+.+-+..+|+.|.-..+-+|.+..-++..++.
T Consensus 206 ~~g~----------------wigala~~edWlvCGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 206 DWGK----------------WIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ccCc----------------eeEEEeccCceEEecCCCceeEEeccCCCceEEEe
Confidence 1111 23455556678888887789999998877666653
No 215
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.22 E-value=5.4e-10 Score=103.77 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCC-CCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCc-------
Q 011473 24 KAGLAISDRNSSFVHIYDARAD-SNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPES------- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~-~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~------- 94 (485)
++.++.++|-|-|..|||+..+ .+.....|-.|.+.|..++|...+ +.+||++.||.+|++|++..+...-
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 6778999999999999999732 222345566999999999999966 4899999999999999886443211
Q ss_pred --------------------------eeEEEEc-CCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 011473 95 --------------------------EVSFRLK-SDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 95 --------------------------~~~~~~~-~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg 145 (485)
.+..+++ -.+++..+++|++.|+.|+|.|. +.+++|+|.|..+-+||+.+.
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 1112222 13556678999999999999994 579999999999999999753
No 216
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.21 E-value=1.7e-10 Score=106.98 Aligned_cols=104 Identities=15% Similarity=0.258 Sum_probs=85.2
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+..+++. .|++++.||++ +..+...+. .|...|..+.|+|+-+ +|+||+.||.|++||.+.-
T Consensus 184 gnqv~tt-~d~tl~~~D~R--T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t------------- 247 (370)
T KOG1007|consen 184 GNQVATT-SDSTLQFWDLR--TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT------------- 247 (370)
T ss_pred cceEEEe-CCCcEEEEEcc--chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-------------
Confidence 3344443 58999999998 655555555 7988999999999877 6889999999999998753
Q ss_pred CCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 011473 103 DTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~t 144 (485)
..++.++.+|...|+++.|+|- .+++++||.|..|.+|...+
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 3456678999999999999994 57889999999999998654
No 217
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=8.6e-10 Score=108.16 Aligned_cols=219 Identities=15% Similarity=0.178 Sum_probs=148.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCC
Q 011473 57 MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDR 135 (485)
Q Consensus 57 ~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~ 135 (485)
.++|++|.|||...++++|+.|++++++.+..- ....+..+.-.+.++.+++|.|+|+ .+++++.-.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc------------cChhheeeeeccCccceeeecCCCceEEEecccce
Confidence 468999999999999999999999999944321 0122333444557899999999999 889999999
Q ss_pred cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-e
Q 011473 136 RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-I 214 (485)
Q Consensus 136 ~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i 214 (485)
..+.||+.+++..+.-. ++ |. | ...+-....+++++||+..+..| |
T Consensus 281 y~ysyDle~ak~~k~~~---------------~~-------g~----e-------~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKP---------------PY-------GV----E-------EKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred EEEEeeccccccccccC---------------CC-------Cc----c-------cchhheeEecCCCCeEEEcccCceE
Confidence 99999999988743210 00 00 0 11223456689999999999988 9
Q ss_pred EEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011473 215 KIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 215 ~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
++....|++++..+.-.- .++ -.+|. +|+..|....+++.||+|+-+-++-
T Consensus 328 ~lLhakT~eli~s~KieG-~v~---~~~fs-------------------------Sdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEG-VVS---DFTFS-------------------------SDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred Eeehhhhhhhhheeeecc-EEe---eEEEe-------------------------cCCcEEEEEcCCceEEEEecCCcce
Confidence 999999999886663322 222 12332 5666777777888999999876643
Q ss_pred CCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeEEEEEe----cCCCChHHHHHHHHhhhc
Q 011473 295 PEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKL----YPEECPKTVENFTTHCRN 363 (485)
Q Consensus 295 ~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~i~i~L----~~~~aP~~~~nF~~l~~~ 363 (485)
+ +|-.--.......++.+ ..+..+-..+..|-|.|== +...+|+-+.++-+|...
T Consensus 379 ~-----~rf~D~G~v~gts~~~S---------~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 379 L-----HRFVDDGSVHGTSLCIS---------LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred E-----EEEeecCccceeeeeec---------CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 3 22222222111112211 2333667777888777633 456799999999888754
No 218
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.4e-10 Score=116.17 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=107.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEE
Q 011473 51 ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI 130 (485)
Q Consensus 51 ~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat 130 (485)
.++..|..-|++++|+|....|++|+.|++|++|.++. ..... .+.-.++++|++|.++|.|+++++.+.++.+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-~~~s~-----~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-AKKSA-----EKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-cCCcc-----ccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 36668999999999999999999999999999998843 11111 1224578899999999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec
Q 011473 131 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 210 (485)
Q Consensus 131 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s 210 (485)
|+.|++|+.|++.... .-++. |... +-...-......++.++|++....|++++
T Consensus 362 gg~Dg~I~~w~~p~n~--dp~ds---------------~dp~---------vl~~~l~Ghtdavw~l~~s~~~~~Llscs 415 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQ--DPDDS---------------YDPS---------VLSGTLLGHTDAVWLLALSSTKDRLLSCS 415 (577)
T ss_pred eccCceeeeeccCCCC--Ccccc---------------cCcc---------hhccceeccccceeeeeecccccceeeec
Confidence 9999999999875211 01110 0000 00011112234457899999999999999
Q ss_pred CCC-eEEEEcccCeEEEeecc
Q 011473 211 LLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 211 ~~~-i~v~d~~tg~~v~~~~~ 230 (485)
.+| +++|+...... .+++.
T Consensus 416 ~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 416 SDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred CCceEEeeccCCcCc-cccCC
Confidence 998 99999866554 45544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=4.7e-10 Score=105.44 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=95.3
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEcCC
Q 011473 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI-IEYWSPH 87 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~-i~~Wd~~ 87 (485)
..|+.+|.+... .....++.=|-.-|.|+|-|+......+...+..|.+.|.|++.+-+|.++||+|..|+ |||||.+
T Consensus 134 ~NPkGlC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 134 SNPKGLCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred cCCCceEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 446666655432 23455555566679999999973222234678899999999999999999999999986 6899998
Q ss_pred CCCCCCceeEEEEcCCCceEEeecC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011473 88 TLQFPESEVSFRLKSDTNLFEILKS--KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~--~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
+ ++.+++++.. .+.+.+++||||+++||++|.-|+++||.++...
T Consensus 213 ~--------------g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 D--------------GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred C--------------CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 8 5566667654 3679999999999999999999999999887533
No 220
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=7.9e-10 Score=104.81 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=82.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-CCeEEEEEcCCCCEEEEEe----CCCcEEEEcCCCCCCCCceeEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTVISAD----DKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~fspd~~~l~s~s----~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.+..+.+++.||+||+||++.........+..|. .+-.|++.+-.+++++.+. .|-.+.+||.+..+.+
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------ 156 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------ 156 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch------
Confidence 5567888889999999999843344455566776 5667887777777777765 4567889998764321
Q ss_pred EEcCCCceEE-eecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011473 99 RLKSDTNLFE-ILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 99 ~~~~~~~l~~-~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg 145 (485)
+.. ...|...|+++.|+| |-.+|+|||.||.|.|||++.-
T Consensus 157 -------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 157 -------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred -------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 222 457889999999999 6689999999999999998754
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=5.9e-11 Score=116.26 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=128.2
Q ss_pred eeecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 011473 4 MIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEY 83 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~ 83 (485)
.|.+--....+.|++. .+.++|+ ...-++|||- .+..+|.++.| .+|..+.|.|..-+|++++..|.+++
T Consensus 166 Ei~v~Etv~Dv~~LHn----eq~~AVA--QK~y~yvYD~---~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y 235 (545)
T KOG1272|consen 166 EINVMETVRDVTFLHN----EQFFAVA--QKKYVYVYDN---NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKY 235 (545)
T ss_pred eeehhhhhhhhhhhcc----hHHHHhh--hhceEEEecC---CCcEEeehhhc-CchhhhcccchhheeeecccCCceEE
Confidence 3344444556677765 4444444 5788999996 47889999877 57899999999999999999999999
Q ss_pred EcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhc
Q 011473 84 WSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQR 163 (485)
Q Consensus 84 Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~ 163 (485)
-|+.+|++... +....+.+..++-+|-...+-+|...|+|.+|...+.+.+..+
T Consensus 236 ~DVS~GklVa~--------------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi------------ 289 (545)
T KOG1272|consen 236 QDVSTGKLVAS--------------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI------------ 289 (545)
T ss_pred EeechhhhhHH--------------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH------------
Confidence 99999887765 6666677888899999999999999999999998765432111
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee
Q 011473 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 228 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~ 228 (485)
.+...++.+|+++++|+|+++++.|. ++|||+..-..++++
T Consensus 290 ------------------------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 290 ------------------------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ------------------------HhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 12344668999999999999999987 999999866544443
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.1e-09 Score=113.54 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=106.9
Q ss_pred CCCcceEE-EEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEcCCCCCCCCceeEE
Q 011473 21 GDVKAGLA-ISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~-vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~-s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
++|++..+ ++.+.++.+.||.+...++ .+..+..|...+.+..|+|||+.|+.+ +.++..++|++....
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~-------- 325 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGG-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG-------- 325 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCC-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------
Confidence 36676544 4455678777664431133 356677788888999999999976654 467889999653211
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.....+ .+.. .+.+|||||++++..+.++ +.+||+.+|+.......
T Consensus 326 -----~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~------------------------- 371 (429)
T PRK01742 326 -----GGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST------------------------- 371 (429)
T ss_pred -----CCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-------------------------
Confidence 111112 2322 4578999999999888765 55599999876422110
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc--cCeEEEeecccCCccce
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH--TNKVSRILGKVENNDRF 237 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~--tg~~v~~~~~~~~~~r~ 237 (485)
....+.+|+|+|++|++++.++ +++|++. +|++++.+..+++..+.
T Consensus 372 -------------~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~ 420 (429)
T PRK01742 372 -------------FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF 420 (429)
T ss_pred -------------CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC
Confidence 0012567999999999998865 8888864 68888888777644443
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.14 E-value=1.4e-09 Score=102.40 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=119.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC-CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADS-NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+...++.+-....|.||...... -++.|+|+.|...|+.|.|+|..+.|++|+.|..-.+|....+. +|
T Consensus 21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~------~W---- 90 (361)
T KOG1523|consen 21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG------TW---- 90 (361)
T ss_pred CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC------ee----
Confidence 33344444467789999986434 47889999999999999999999999999999999999652211 11
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.+...+..+...++++.|+|.++.||+||.-+.|.||-++...-- -+
T Consensus 91 -kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--------------------------------WV 137 (361)
T KOG1523|consen 91 -KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--------------------------------WV 137 (361)
T ss_pred -ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--------------------------------eh
Confidence 233446678888999999999999999999999999976543221 12
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 183 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
.+.+++...-++.++.|.|++-+|+.||.|+ .+++...
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 3456666666788999999999999999887 8888765
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.13 E-value=1.2e-10 Score=114.09 Aligned_cols=114 Identities=23% Similarity=0.374 Sum_probs=101.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
-|...||+++++.|-++.-|+. .++.+..+..-.+.+..++-+|-...+-.|...|+|-+|.+..
T Consensus 218 LPyHfLL~~~~~~G~L~Y~DVS--~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s------------- 282 (545)
T KOG1272|consen 218 LPYHFLLVAASEAGFLKYQDVS--TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS------------- 282 (545)
T ss_pred cchhheeeecccCCceEEEeec--hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-------------
Confidence 3556799999999999999997 8888888887788999999999999999999999999998865
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.++|..+..|.++|.+|++.|+|+++||.|.|+.++|||++.-..+.++
T Consensus 283 -kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 283 -KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred -cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 5667778899999999999999999999999999999999887766555
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.13 E-value=1.8e-08 Score=95.03 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC--CEEEEE-eCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEee
Q 011473 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF--DTVISA-DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 110 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~--~~l~s~-s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~ 110 (485)
++.|.||... .+.+.++.++.-..|=--++..|.. .+||-- -.-|.|++-|+..-+. .....+.
T Consensus 112 ~~~I~VytF~-~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------~~p~~I~ 178 (346)
T KOG2111|consen 112 ENKIYVYTFP-DNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------NAPSIIN 178 (346)
T ss_pred cCeEEEEEcC-CChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------------CCceEEE
Confidence 6889999986 3456677776433222234444432 334432 3458888888764222 0224478
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhcc
Q 011473 111 KSKTTVSAIEVSPDGKQFSITSPDRR-IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 189 (485)
Q Consensus 111 ~~~~~v~~i~~spdg~~lat~s~D~~-I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~ 189 (485)
.|.+.+.|++++-+|.++||+|..|+ |||||..+|+.++.+... .
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG----------------------------------~ 224 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG----------------------------------V 224 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC----------------------------------C
Confidence 89999999999999999999999886 899999999998887431 1
Q ss_pred CCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011473 190 ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 190 ~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
..+.+.+|+|||++.+|+.+|+.| ++++.+...
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 223456999999999999999988 999998753
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=9.5e-10 Score=117.38 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=120.7
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+++...+++|+.-+.|.+|+.. ++..+. .+.||.+.|.++.|+-||.+++|+|.|+++|+|++++.+.+..
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~-~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~------ 212 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPH-EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC------ 212 (967)
T ss_pred ccCcEEEEEeccccccEEEEecc-ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc------
Confidence 35677888899889999999997 344444 6789999999999999999999999999999999998766542
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..-+|.+.|+.+.|+|. +++|++.|.+.++|+. .++.+.+|++|.
T Consensus 213 -------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~------------------------- 257 (967)
T KOG0974|consen 213 -------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHS------------------------- 257 (967)
T ss_pred -------ccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhh-------------------------
Confidence 14579999999999999 9999999999999964 455555554432
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011473 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
....+.++.+++...++++..|+ +++|+..+
T Consensus 258 ----------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 258 ----------GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ----------hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 22346888988888889999987 99999864
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=107.90 Aligned_cols=288 Identities=15% Similarity=0.157 Sum_probs=173.8
Q ss_pred ecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 011473 6 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPV--FDTVISADDKGIIE 82 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd--~~~l~s~s~dg~i~ 82 (485)
+|.-.+.|+.-++.. ..+.+++|+|+|..|.+||+. ...++..+. ||...|.-..|-|. ...+++++.||.++
T Consensus 137 kL~~H~GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~--~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFN--QRGDVLASGSDDLQVVVWDWV--SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred cccCCCCccceeeec--ccCceeeccCccceEEeehhh--ccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 445567777766653 467799999999999999997 666666665 89999988889884 46899999999999
Q ss_pred EEcCC-CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEe-----ccch
Q 011473 83 YWSPH-TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVY-----DESL 155 (485)
Q Consensus 83 ~Wd~~-t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~-----~~~~ 155 (485)
+=.+- ++. ......+..|.+.|.-++.-|+. ..|.+++.|+.+.-+|++++.....+ ++..
T Consensus 213 ~s~i~~t~~------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 213 VSEILETGY------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeeeccccc------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 85321 211 11233466788889999999965 57889999999999998876532222 1110
Q ss_pred h-HHHhhhcCCCcccccc--c------ccccchhhhh-----------HhhhccCCCCCceEEECCCCCEEEEecCC-Ce
Q 011473 156 E-VAQDLQRSDAPLYRLE--A------IDFGRRMAVE-----------KEIEKTETAPPSNAIFDESSNFLIYATLL-GI 214 (485)
Q Consensus 156 ~-~i~~~~~~~~~~~~~~--~------~~~g~~~~~~-----------~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i 214 (485)
+ .+..++-.|...+.+. . .-.+|++..+ ..+.......+..++|+.+|.-|+++-.+ .|
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 0 0111111111111111 0 0112222222 11222334456899999777655555554 58
Q ss_pred EEEEccc--C----------eEEE-eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 011473 215 KIVNLHT--N----------KVSR-ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 281 (485)
Q Consensus 215 ~v~d~~t--g----------~~v~-~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d 281 (485)
.++.-.- | ..++ ++.||. +.|-+.-.-|- .|.+-+++|||+=
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr-N~~TVKgVNFf------------------------GPrsEyVvSGSDC 415 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHR-NSRTVKGVNFF------------------------GPRSEYVVSGSDC 415 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccc-cccccceeeec------------------------cCccceEEecCcc
Confidence 8885332 2 2222 244444 22222222222 2788899999999
Q ss_pred ceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeE
Q 011473 282 HRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGD 340 (485)
Q Consensus 282 ~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~ 340 (485)
++|++|.+...+..---.+-|.+.|...+---++..+ ..+...-|.+.|+++.
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA------sSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA------SSGIDHDVKIWTPLTA 468 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh------ccCCccceeeecCCcc
Confidence 9999999876554432334577999865322233332 2245556777777664
No 228
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=7.6e-09 Score=108.86 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=120.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCC--CCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARA--DSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~--~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
-+|.+.+++++..||.|.+|.--. +...-.+.|.-|..+|++++|++||.+|+||+..|.+-+|..+|.+ ++-
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf---- 287 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF---- 287 (792)
T ss_pred eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccc----
Confidence 367899999999999999996431 2223456677899999999999999999999999999999888754 221
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+.+-.+++..+.+|||+.+.+....|..|.+-...+.....++.+-... ..+
T Consensus 288 ----------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~-------------~~~----- 339 (792)
T KOG1963|consen 288 ----------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP-------------TPS----- 339 (792)
T ss_pred ----------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC-------------Ccc-----
Confidence 4555678999999999999999999999999988776665554321000 000
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 228 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~ 228 (485)
.+.....-...+++||.-+-++..+..+ +++||+.+.+.+..+
T Consensus 340 -------~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 340 -------TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred -------ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence 0000111225678888555555555544 999998887766544
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.10 E-value=1.9e-09 Score=109.81 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=132.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 011473 59 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIR 138 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~ 138 (485)
-|..++|-|||..|+-+..+ .+.++|+.. ++.+..+++|+..|+|++||.||++||+|+.|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd--------------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD--------------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCC--------------cccccccccccceEEEEEEccCCceeccCCCceeEE
Confidence 68899999999977766544 677889877 556666999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeccchhHHHhhhcCCCccccc--ccccccchhhhhHhhhcc-CCCCCceEEECCCCCEEEEecCCC-e
Q 011473 139 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL--EAIDFGRRMAVEKEIEKT-ETAPPSNAIFDESSNFLIYATLLG-I 214 (485)
Q Consensus 139 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~g~~~~~~~~i~~~-~~~~~~~i~fd~~g~~l~~~s~~~-i 214 (485)
+|..+-.-.++ | .|...|.+|.+.|..-+-. .-.+||-..+..+.+.++ ....+.+.+|..||+||+.|-.+| |
T Consensus 79 ~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 79 IWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred Eecccccceee-e-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceE
Confidence 99865322221 2 2445677777776522111 112344444444554443 344567899999999999998877 6
Q ss_pred EEEEcccCeEEEee---cccCCccceeeeeeccCCccCc-------------ceeeeecccccc------ccCCCCCCCC
Q 011473 215 KIVNLHTNKVSRIL---GKVENNDRFLRIALYQGDRSSK-------------KVRKIPAAAANA------NESKEPFSDP 272 (485)
Q Consensus 215 ~v~d~~tg~~v~~~---~~~~~~~r~~~~s~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~~~~d~ 272 (485)
.+-+- +|+..-.+ ||...++..++++--.+..... ..++-.|-..+. ...++. +++
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf-~NG 234 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYF-TNG 234 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheec-cCC
Confidence 66543 34332222 3333244333322111110000 001111111111 122333 777
Q ss_pred eEEEeeecCceEEEEecCC
Q 011473 273 TLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~ 291 (485)
-.+.-|..|+.+.+|+|+-
T Consensus 235 Ey~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred cEEEEccCCCceEEEeecC
Confidence 7788888999999998853
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.8e-08 Score=96.34 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=125.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC-CCCCCCceeEEEEc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~-t~~~~~~~~~~~~~ 101 (485)
+-.-++.+..|.+|||||-. .++...|+ .....|+|++|-|.+..-++.+-.+.|.+|... +....+. -+.-
T Consensus 109 H~~~fava~nddvVriy~ks---st~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~---~~~~ 182 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKS---STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN---IRMM 182 (445)
T ss_pred hhhhhhhhccCcEEEEeccC---CCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc---cccc
Confidence 33345566689999999975 24455555 345689999999987766666667789999432 2111110 0000
Q ss_pred CCC--ceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 102 SDT--NLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 102 ~~~--~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+.. .+....+| .+|+++.|.+||..+++++- |..|+|||+.+|.++....
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-------------------------- 235 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-------------------------- 235 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------------------------
Confidence 011 22233445 67999999999999999995 7899999999998753321
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEc-ccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL-HTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~-~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
.....++.+.|||||.+|..++-+. .++|+. ++-...+=.-+. . .++-+|+..
T Consensus 236 ----------~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---g-rvqtacWsp----------- 290 (445)
T KOG2139|consen 236 ----------KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---G-RVQTACWSP----------- 290 (445)
T ss_pred ----------cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---C-ceeeeeecC-----------
Confidence 0112235789999999999999887 799954 333332222111 1 455566641
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
....|+.+.++.-++|--+-
T Consensus 291 -------------cGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 291 -------------CGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred -------------CCCEEEEEEcCCceEEEEee
Confidence 33566677777888886543
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=2.9e-08 Score=103.26 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=96.1
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD---KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~---dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
..|.+||.. +...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..
T Consensus 182 ~~l~~~d~d---g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------~~l~~ 243 (435)
T PRK05137 182 KRLAIMDQD---GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------------ELVGN 243 (435)
T ss_pred eEEEEECCC---CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------------EEeec
Confidence 378888874 4455677788899999999999998887763 46899999876431 22344
Q ss_pred CCccEEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 112 SKTTVSAIEVSPDGKQFSI-TSPDRR--IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat-~s~D~~--I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
+...+.+.+|||||+.|+. .+.++. |.+||+.++++.+....
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~----------------------------------- 288 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS----------------------------------- 288 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC-----------------------------------
Confidence 4556778899999998864 455554 77889988876432110
Q ss_pred cCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEE
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSR 226 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~ 226 (485)
.....+..|+|||++|++.+.. .|.+||+.+++..+
T Consensus 289 --~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 289 --PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred --CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 0012357899999999998753 27778877665543
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.07 E-value=1.2e-08 Score=106.60 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=127.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEE----ecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISK----KVHMGPVKVMRYNPVFD--TVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l----~~h~~~V~~l~fspd~~--~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
++.++++|..+|.|-+||++.....+...+ ..|..+|+.+.|..+-. -++|+|.||.|..|+++....|..
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e--- 330 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE--- 330 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchh---
Confidence 567899999999999999984333222222 27999999999976544 499999999999998877666543
Q ss_pred EEEcCCCceEEee------cCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE--EEeccchhHHHhhhcCCCcc
Q 011473 98 FRLKSDTNLFEIL------KSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLR--RVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 98 ~~~~~~~~l~~~~------~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~--~~~~~~~~~i~~~~~~~~~~ 168 (485)
...+.... .....+++++|.| +-..|+.|+.+|.|.-=+-...+.- ..+..+...
T Consensus 331 -----~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~----------- 394 (555)
T KOG1587|consen 331 -----GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF----------- 394 (555)
T ss_pred -----hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc-----------
Confidence 11111111 1224589999998 6678999999998876332211110 011110000
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCCeEEEEcc-cCeEEEeecccCCccceeeeeeccCC
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLGIKIVNLH-TNKVSRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~i~v~d~~-tg~~v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
..+..++.++.++|=+. +++++++.+++||... ....+.-+..+- . .+
T Consensus 395 -------------------~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~---~----~v---- 444 (555)
T KOG1587|consen 395 -------------------ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP---D----YV---- 444 (555)
T ss_pred -------------------cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc---c----ee----
Confidence 01223445777777666 5566666679999875 222111111110 0 01
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
....|+..-|++|+++-.|+.+++|+-..
T Consensus 445 ----------------~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 445 ----------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ----------------eeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 23467778899999999999999998753
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.07 E-value=1.5e-08 Score=109.86 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=138.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc--
Q 011473 22 DVKAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-- 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~-- 94 (485)
+++..+++|||+||+|++||.+.- +.....++..-.+++.++.+.+.++.+|.++.||.|++.+++-....+.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 456679999999999999998621 1123334444577899999999999999999999999986654221110
Q ss_pred -------------------------------------eeEEEEcCCCceEEe--ecCCccEEEEEEcCCCCEEEEEeCCC
Q 011473 95 -------------------------------------EVSFRLKSDTNLFEI--LKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 95 -------------------------------------~~~~~~~~~~~l~~~--~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
.+.|+.++...+..+ .-..+.|++++.+|.+.++++|..-|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 111333333322222 22347799999999999999999999
Q ss_pred cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEE---ECCCCCEEEEecC-
Q 011473 136 RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI---FDESSNFLIYATL- 211 (485)
Q Consensus 136 ~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~---fd~~g~~l~~~s~- 211 (485)
.+-+||++=+..+..+.-..+ .+...+. +.+.....++++.
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~-----------------------------------~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPAR-----------------------------------APIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred eEEEEEeecCceeecccCccc-----------------------------------CCcceEEeeccCCCCceEEEeccc
Confidence 999999987776655422111 0011111 1222234455544
Q ss_pred --CCeEEEEcccCeEEEeecccCCccceeeeeeccC--CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 011473 212 --LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQG--DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 287 (485)
Q Consensus 212 --~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f 287 (485)
..+-+|+..+|.+-+++....+. - +++-+.. ...+.... ............++.||..|.+|+.|
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~-p--~ls~~~Ps~~~~kp~~~--------~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGA-P--ILSYALPSNDARKPDSL--------AGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCC-c--chhhhcccccCCCCCcc--------cceeeecccCCceeeecCCccceeec
Confidence 34999999999877766544210 0 1111100 00000000 00000111234567899999999999
Q ss_pred ecCCCCCC
Q 011473 288 SRREPEEP 295 (485)
Q Consensus 288 ~~~~~~~~ 295 (485)
+...|+-.
T Consensus 1332 D~~~p~~s 1339 (1431)
T KOG1240|consen 1332 DPTRPEIS 1339 (1431)
T ss_pred cCCCcccc
Confidence 99877765
No 234
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.05 E-value=3e-08 Score=99.20 Aligned_cols=166 Identities=10% Similarity=0.118 Sum_probs=99.6
Q ss_pred EEEEeCCCCcce-EEEEeCCCCeEEEEEcCCCCC---cceEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEcCCCC
Q 011473 15 EWVYKQGDVKAG-LAISDRNSSFVHIYDARADSN---EPLISKKVHMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTL 89 (485)
Q Consensus 15 ~~~~~~~~~~~~-l~vs~s~d~~I~iwd~~~~~~---~~~~~l~~h~~~V~~l~fspd~~~l~s-~s~dg~i~~Wd~~t~ 89 (485)
+++.. +|+++ ++++...++.|.+||+.. .+ +.+..+. +.....+++|+|++++++. ...++.|.+||+.+.
T Consensus 83 ~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 83 THIST--DHQGRFLFSASYNANCVSVSPLDK-DGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred eEEEE--CCCCCEEEEEEcCCCeEEEEEECC-CCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 34444 34554 444444589999999962 22 2333333 3345678899999998754 556799999998652
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC--CcE--EEEeccchhHHHhhhcC
Q 011473 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT--GKL--RRVYDESLEVAQDLQRS 164 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~t--g~~--~~~~~~~~~~i~~~~~~ 164 (485)
..... . ......... ...+..++|+|||++++++.. +++|.+||+.. ++. +..+.. +
T Consensus 159 g~l~~------~-~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~-------~--- 220 (330)
T PRK11028 159 GHLVA------Q-EPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM-------M--- 220 (330)
T ss_pred Ccccc------c-CCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec-------C---
Confidence 21110 0 000011111 133578999999999988876 89999999973 433 222210 0
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccC
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTN 222 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg 222 (485)
+. .. ........+.|+|+|++|.++.. ..|.+|++.+.
T Consensus 221 p~------~~--------------~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 221 PA------DF--------------SDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CC------cC--------------CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 00 00 00001136889999999998854 34999998653
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=6.3e-09 Score=105.19 Aligned_cols=189 Identities=17% Similarity=0.197 Sum_probs=116.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
...++++-..++.|.+.|.. +.+.+.++......-..+.|+||++++..++.||.|.++|+.+.+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v----------- 71 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV----------- 71 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE-----------
T ss_pred ccEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE-----------
Confidence 45566777789999999997 78889999865554455789999999999999999999999885533
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccchhH-------HHhhhcCCC-cccccccc
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEV-------AQDLQRSDA-PLYRLEAI 174 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~~~~~~~-------i~~~~~~~~-~~~~~~~~ 174 (485)
..++.. ....++++||||+++++++ .++.+.++|.+|.+.++++...... +..+-.++. ..+-+.-.
T Consensus 72 ---~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 72 ---ATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp ---EEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred ---EEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 334433 3468899999999999887 5899999999999999887432111 111111111 10111111
Q ss_pred cccchhhhh----Hhhh---ccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeec
Q 011473 175 DFGRRMAVE----KEIE---KTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 175 ~~g~~~~~~----~~i~---~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~ 229 (485)
+.++-..+. +.+. ...........|||+|+|++.+.. +.|-++|..+++++..+.
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 111110000 0000 011223357899999999888754 358999999999887663
No 236
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-09 Score=106.50 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=64.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 61 KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVF 140 (485)
Q Consensus 61 ~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iw 140 (485)
.+++|+++|..+++++.||++|+|+..+ ...+.....|.+.|.++.|||||+.||+-+.| ..+||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--------------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--------------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc--------------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 6789999999999999999999998433 22333466788999999999999999999999 99999
Q ss_pred ECCCCcEEEEe
Q 011473 141 WFRTGKLRRVY 151 (485)
Q Consensus 141 d~~tg~~~~~~ 151 (485)
++.+|-++...
T Consensus 213 ~~~~g~~~a~~ 223 (398)
T KOG0771|consen 213 SVNTGAALARK 223 (398)
T ss_pred EeccCchhhhc
Confidence 99999665443
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=6e-08 Score=100.82 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
..|.+||.. +...+.+..|...+.+.+|+||++.|+.++.+ ..|.+||+.+++. ..+..
T Consensus 184 ~~l~i~D~~---g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------------~~l~~ 245 (433)
T PRK04922 184 YALQVADSD---GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------------ELVAS 245 (433)
T ss_pred EEEEEECCC---CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------------EEecc
Confidence 468999984 34456677788899999999999998887743 4688888876431 11222
Q ss_pred CCccEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 112 SKTTVSAIEVSPDGKQFSI-TSPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat-~s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
......+.+|||||++++. .+.++ .|++||+.++++.+....
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~----------------------------------- 290 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH----------------------------------- 290 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC-----------------------------------
Confidence 3334557899999998864 45555 599999998875332110
Q ss_pred cCCCCCceEEECCCCCEEEEecCC-C---eEEEEcccCeEEE
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL-G---IKIVNLHTNKVSR 226 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~-~---i~v~d~~tg~~v~ 226 (485)
.....+.+|+|||++|++.+.. + |.++|+.+++..+
T Consensus 291 --~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 291 --FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred --CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 0012367899999999998863 2 5566766666433
No 238
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=5.1e-08 Score=101.08 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=93.4
Q ss_pred CCCCcceEEEEe---CCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCc--EEEEcCCCCCCCC
Q 011473 20 QGDVKAGLAISD---RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDKGI--IEYWSPHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs~---s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~-s~dg~--i~~Wd~~t~~~~~ 93 (485)
.++|++..++.. +.+..|++||+. +++. ..+......+.+++|||||+.|+.. +.+|. |.+||+++++.
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~--~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-- 279 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLA--NGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-- 279 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECC--CCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--
Confidence 346676655532 234579999997 3432 2222233334568999999977754 55554 77778876332
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-R--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D-~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
..+..+...+...+|||||+.|+..+.+ + .|.++|+.+++..+....
T Consensus 280 -------------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~----------------- 329 (429)
T PRK03629 280 -------------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE----------------- 329 (429)
T ss_pred -------------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-----------------
Confidence 2233344557789999999999887754 3 455557766654322100
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeE
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKV 224 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~ 224 (485)
........|+|+|++|++.+.. .|.+||+.+++.
T Consensus 330 --------------------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 330 --------------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred --------------------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 0012367899999999987653 278889888764
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.03 E-value=4.2e-09 Score=96.76 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=140.2
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC------ceeE---
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE------SEVS--- 97 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~------~~~~--- 97 (485)
+.+|...|.|++|++. +...+..++ .|+..|+.+.--|+ +.|.+-+.|..+.+|++.-..+.. +.+.
T Consensus 28 L~sg~~~G~V~~w~lq--t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCr 104 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQ--TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCR 104 (323)
T ss_pred hhcccccceEEEEEee--cCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccccc
Confidence 6778889999999997 555666677 67889999999887 678899999999999876422211 0011
Q ss_pred EEEcCCC----ceE--------E---e---------------ecCCccEEEEEEcC-CCC-EE-EEEeCCCcEEEEECCC
Q 011473 98 FRLKSDT----NLF--------E---I---------------LKSKTTVSAIEVSP-DGK-QF-SITSPDRRIRVFWFRT 144 (485)
Q Consensus 98 ~~~~~~~----~l~--------~---~---------------~~~~~~v~~i~~sp-dg~-~l-at~s~D~~I~iwd~~t 144 (485)
|.+..+. .+. + . ....+.+.|..+.. +++ .| +.|-+++.+-+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 1111000 000 0 0 01123455555433 333 33 4555799999999999
Q ss_pred CcEEEEeccchhHHHhhhcCCC-----------------------cccccccccccchhhhhHhhhccCCCCCceEEECC
Q 011473 145 GKLRRVYDESLEVAQDLQRSDA-----------------------PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE 201 (485)
Q Consensus 145 g~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~ 201 (485)
+..+-.+...-+.+...+.... .+|.+......-.+..|.++ ..+-++.+.-=|
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l---knpGv~gvrIRp 261 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL---KNPGVSGVRIRP 261 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe---cCCCccceEEcc
Confidence 8544333222221111111110 11111111000001111111 233456788889
Q ss_pred CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeec
Q 011473 202 SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK 280 (485)
Q Consensus 202 ~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~ 280 (485)
|++.+++++.|+ |++++..|++.+.++..|...+..+++ .||.-++|.|++
T Consensus 262 D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf----------------------------spd~~lmAaask 313 (323)
T KOG0322|consen 262 DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF----------------------------SPDCELMAAASK 313 (323)
T ss_pred CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe----------------------------CCCCchhhhccC
Confidence 999999999998 999999999999999988865554433 278889999999
Q ss_pred CceEEEEe
Q 011473 281 RHRIYLFS 288 (485)
Q Consensus 281 d~~i~~f~ 288 (485)
|.||-+|.
T Consensus 314 D~rISLWk 321 (323)
T KOG0322|consen 314 DARISLWK 321 (323)
T ss_pred CceEEeee
Confidence 99999995
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=5.7e-08 Score=100.94 Aligned_cols=151 Identities=15% Similarity=0.050 Sum_probs=98.2
Q ss_pred CCCCcceEEEEeCC---CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEcCCCCCCCC
Q 011473 20 QGDVKAGLAISDRN---SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKG--IIEYWSPHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs~s~---d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg--~i~~Wd~~t~~~~~ 93 (485)
.++|++..++..+. +..|++||+. +++. ..+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.+++
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~--~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--- 283 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLA--TGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--- 283 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECC--CCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---
Confidence 45677766665442 3469999996 3432 23334444556789999998664 666666 47778887643
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRR--IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~--I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
+..+..+.......+|||||++|+..+. ++. |.++|+.+++..+...+
T Consensus 284 ------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~----------------- 334 (433)
T PRK04922 284 ------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ----------------- 334 (433)
T ss_pred ------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-----------------
Confidence 2224444445567899999999988774 444 66677777765332110
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEE
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVS 225 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v 225 (485)
.....+.+|+|+|++|++.+.. .|.+||+.+++..
T Consensus 335 --------------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 335 --------------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred --------------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 0012367899999999987643 3889999887754
No 241
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.03 E-value=7e-08 Score=96.53 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=95.3
Q ss_pred EEEEeCCCCeEEEEEcCC-CCCcceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEcCC-CCCCCCceeEEEEcCC
Q 011473 27 LAISDRNSSFVHIYDARA-DSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDKGIIEYWSPH-TLQFPESEVSFRLKSD 103 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~-s~dg~i~~Wd~~-t~~~~~~~~~~~~~~~ 103 (485)
+.++...|+.|++||+.. +..+.++++. +.+....++++|++++|+.+ ..++.|.+|++. ++++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~----------- 71 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT----------- 71 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------
Confidence 455556789999999952 1123556654 34567789999999987655 457889889774 22110
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
.+.... ....+..++|+|+|++|++++. ++.|.+||+.+ +........
T Consensus 72 -~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------------------------- 121 (330)
T PRK11028 72 -FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---------------------------- 121 (330)
T ss_pred -Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee----------------------------
Confidence 011111 1234678999999999988774 88999999864 322111100
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEcccC
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTN 222 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~~tg 222 (485)
+ ........++|+|+|++|++++.. .|.+||+.+.
T Consensus 122 ----~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 122 ----I--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred ----c--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 0 000112467899999999877754 3999999764
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=5.8e-09 Score=111.33 Aligned_cols=203 Identities=13% Similarity=0.170 Sum_probs=135.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.+.|+++| +-..|||||+. ....++.+. +-..-|+++.-+- .|++++.|=.||.|+++|.+.-..
T Consensus 1177 ~G~Ll~tG-d~r~IRIWDa~--~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---------- 1243 (1387)
T KOG1517|consen 1177 SGHLLVTG-DVRSIRIWDAH--KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---------- 1243 (1387)
T ss_pred CCeEEecC-CeeEEEEEecc--cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc----------
Confidence 46677776 47899999997 556666665 4555677776543 468999999999999999764211
Q ss_pred CCCceEEeecCCcc--EEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 102 SDTNLFEILKSKTT--VSAIEVSPDGKQ-FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 102 ~~~~l~~~~~~~~~--v~~i~~spdg~~-lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+..+...+.|... |..+.+-+.|-. |++||.||.|++||++.......++- . ..-++|.
T Consensus 1244 -ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-------v----------~~~~yGs 1305 (1387)
T KOG1517|consen 1244 -DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-------V----------AHWEYGS 1305 (1387)
T ss_pred -cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-------e----------eccccCc
Confidence 2234446677776 999999997754 99999999999999987532211100 0 0000111
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
..+++..++....+++|+...|+||++. |+.+..+.-+. +|+ + +.+...+.+.|.
T Consensus 1306 --------------~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~---~F~------~-q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1306 --------------ALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNP---GFM------G-QRIGSVSCLAFH 1360 (1387)
T ss_pred --------------cceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCc---ccc------c-CcCCCcceeeec
Confidence 2457888899999999999779999986 44444444322 221 1 111112222222
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|--.++|.|+.|++|-||+-+.+.
T Consensus 1361 -----------P~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1361 -----------PHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -----------chhHhhhhccCCceEEEeecCCcC
Confidence 667788999999999999876543
No 243
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.9e-08 Score=96.86 Aligned_cols=119 Identities=8% Similarity=0.146 Sum_probs=94.1
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC----CCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA----DSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~----~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
.|+.-+.. +.+++.|+||++|..+++|.+.. ...+++.... .|.+.|.||+|+.....+.||..+++|.+.|+
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 34444444 44689999999999999999741 1335565554 56799999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEee--cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEIL--KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
++ ...++.+. ...+.|+.+..+|..+.|++.+.++.|.+||.+..+
T Consensus 135 Et--------------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 135 ET--------------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cc--------------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 87 33444443 334689999999999999999999999999998654
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.4e-08 Score=102.83 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=122.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEc------C--------------CCCEEEEEeCCCc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYN------P--------------VFDTVISADDKGI 80 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fs------p--------------d~~~l~s~s~dg~ 80 (485)
...+++....||.+||||.. .++....+. .-++..++..|. | |-.+++-|-..|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~--~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTA--KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEcc--CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34566666789999999986 444444443 123344455553 1 2234555666677
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHh
Q 011473 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQD 160 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~ 160 (485)
|.+++...+++.. .+. -.+|-+.|.++.++.+-..|-+++.|+.+-.|+..+++.++.+.+
T Consensus 82 v~~ys~~~g~it~-----~~s-------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~------- 142 (541)
T KOG4547|consen 82 VLLYSVAGGEITA-----KLS-------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE------- 142 (541)
T ss_pred EEEEEecCCeEEE-----EEe-------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-------
Confidence 7777665543221 111 236788999999999999999999999999999999998887743
Q ss_pred hhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeee
Q 011473 161 LQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRI 240 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~ 240 (485)
....+.+++.+|||+.|++|+.. |++||+.+++++.++.||.+.+|.+++
T Consensus 143 -----------------------------~~~~~~sl~is~D~~~l~~as~~-ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 143 -----------------------------QKPLVSSLCISPDGKILLTASRQ-IKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred -----------------------------CCCccceEEEcCCCCEEEeccce-EEEEEccCceEEEEecCCCcceEEEEE
Confidence 12345699999999999988643 999999999999999999988998887
Q ss_pred eec
Q 011473 241 ALY 243 (485)
Q Consensus 241 s~~ 243 (485)
..-
T Consensus 193 ~~~ 195 (541)
T KOG4547|consen 193 TTL 195 (541)
T ss_pred EEe
Confidence 543
No 245
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=3.1e-09 Score=102.17 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=132.0
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEEEE
Q 011473 52 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSI 130 (485)
Q Consensus 52 ~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat 130 (485)
.+.+|.+-|+++.||.++++|+||+.|..+++|.++..-..+ ..+++..... |.+.|.|++|....+++.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k--------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK--------TPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------CCCCceeccCccccceEEEEEccCCeeEec
Confidence 355899999999999999999999999999999775421111 1233433433 4588999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec
Q 011473 131 TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 210 (485)
Q Consensus 131 ~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s 210 (485)
|+.+++|.+.|+++.+.+.++.+.. ...+ +-.+..+|..+.|++.+
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~--------~~~~--------------------------VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENN--------NRGD--------------------------VYHMDQHPTDNTLIVVT 168 (609)
T ss_pred CCCcceeEeeecccceeeeeecccC--------cccc--------------------------eeecccCCCCceEEEEe
Confidence 9999999999999999887774311 1112 23456678889999999
Q ss_pred CCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 211 LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 211 ~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.++ +-+||+...+- .+..+..+-+.. .--+. -...-.|.||++++..+-.-+|++
T Consensus 169 ~~~~V~~~D~Rd~~~---------~~~~~~~AN~~~-----~F~t~----------~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQN---------PISLVLPANSGK-----NFYTA----------EFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred cCceEEEEeccCCCC---------CCceeeecCCCc-----cceee----------eecCCCceeEEeccccCCCCceee
Confidence 888 89999865330 111111111110 00011 112356999999999999999999
Q ss_pred CCCCCCCccCCCccccCCCCC
Q 011473 290 REPEEPEDATKGRDIFNEKPP 310 (485)
Q Consensus 290 ~~~~~~~~~~~~rd~~n~~p~ 310 (485)
|-|... ..+|.-|-..|.
T Consensus 225 R~~~~~---~~~~~~~~~L~~ 242 (609)
T KOG4227|consen 225 RMQARP---VYQRSMFKGLPQ 242 (609)
T ss_pred ccccch---HHhhhccccCcc
Confidence 876433 346777777664
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=7.6e-08 Score=99.79 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=96.6
Q ss_pred CCCCcceEEEEeCC---CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEc--CCCCCCCC
Q 011473 20 QGDVKAGLAISDRN---SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWS--PHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs~s~---d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd--~~t~~~~~ 93 (485)
.++|++..++..+. ...|.+||+. +++. ..+....+.+.+.+|+|||+.|+ +.+.++..++|. ..+
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~--~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~----- 273 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLA--TGRR-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG----- 273 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECC--CCCE-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC-----
Confidence 34667665554432 2469999997 4443 23333445567899999999776 678888888884 332
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEE--CCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFW--FRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd--~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
..+..+..+.....+.+|||||++|+..+. ++...||. +.+++..+...+
T Consensus 274 ----------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~----------------- 326 (427)
T PRK02889 274 ----------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT----------------- 326 (427)
T ss_pred ----------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-----------------
Confidence 123334445555677899999999887664 45556664 444543222100
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEE
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSR 226 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~ 226 (485)
.....+.+|+|+|++|++.+.. .|.+||+.+++...
T Consensus 327 --------------------g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 327 --------------------GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred --------------------CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 0011256899999999988764 38999998887543
No 247
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=9.7e-08 Score=99.03 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD---DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s---~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
..|.+||.. +...+.+..+...+.+.+|||||+.|+..+ .+..|.+||+.+++. +.+..+.+
T Consensus 179 ~~l~~~d~d---g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------------~~l~~~~~ 243 (429)
T PRK03629 179 YELRVSDYD---GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------------RQVASFPR 243 (429)
T ss_pred eeEEEEcCC---CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------------EEccCCCC
Confidence 368888885 333455666778999999999999888654 235688888876431 11112333
Q ss_pred CCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 112 SKTTVSAIEVSPDGKQFSIT-SPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~-s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
.+.+.+|||||++|+.. +.++ .|++||+.++++.+....
T Consensus 244 ---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----------------------------------- 285 (429)
T PRK03629 244 ---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----------------------------------- 285 (429)
T ss_pred ---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-----------------------------------
Confidence 34568999999998865 3344 599999998876433211
Q ss_pred cCCCCCceEEECCCCCEEEEecCC-C-eEEE--EcccCeE
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL-G-IKIV--NLHTNKV 224 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~-~-i~v~--d~~tg~~ 224 (485)
........|+|+|+.|++.+.. + .++| |+.+++.
T Consensus 286 --~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 286 --RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred --CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 0112467899999999998864 2 4555 6666654
No 248
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=3.7e-09 Score=102.42 Aligned_cols=128 Identities=23% Similarity=0.228 Sum_probs=93.0
Q ss_pred ecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE-
Q 011473 6 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW- 84 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W- 84 (485)
.++-.|.++.++.. +....++..+++...+.+|... .+. ..-+-||-+.++.|+|+||++.|++++.|+.||+=
T Consensus 105 ~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~~--~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ 179 (390)
T KOG3914|consen 105 CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILSAD--SGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSR 179 (390)
T ss_pred ecccCcceeeeeec--cceEEEEeecCCceeeeeeccc--ccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEe
Confidence 34445555555543 3345555566666777777764 232 23345999999999999999999999999999974
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
-+.++.+.. | +.||+..|..++.-++ ..|+++|.|+++|+||+.+|+++++++-
T Consensus 180 ypa~f~Ies----f----------clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 180 YPATFVIES----F----------CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cCcccchhh----h----------ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence 222221111 1 4589999999999876 4589999999999999999999988854
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.5e-07 Score=97.91 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=97.5
Q ss_pred CCCcceEEEEeC---CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEcCCCCCCCCc
Q 011473 21 GDVKAGLAISDR---NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGI--IEYWSPHTLQFPES 94 (485)
Q Consensus 21 ~~~~~~l~vs~s---~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~--i~~Wd~~t~~~~~~ 94 (485)
++|++..++..+ .+..|++||+. +++. ..+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+++++
T Consensus 209 wSpDG~~lay~s~~~g~~~i~~~dl~--~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---- 281 (435)
T PRK05137 209 FSPNRQEITYMSYANGRPRVYLLDLE--TGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---- 281 (435)
T ss_pred ECCCCCEEEEEEecCCCCEEEEEECC--CCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----
Confidence 466666555443 34689999996 4433 44556777788999999998764 6677776 4455776532
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-D--RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D--~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+..+..+.....+.+|||||++++..+. + ..|++||+.+++..+...+
T Consensus 282 -----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~------------------ 332 (435)
T PRK05137 282 -----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG------------------ 332 (435)
T ss_pred -----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC------------------
Confidence 2334455555677899999999988774 3 3688888877665332211
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCe
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNK 223 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~ 223 (485)
...+....|+|+|++|++.+.. .|.+||+.++.
T Consensus 333 -------------------~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 333 -------------------GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred -------------------CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 0112357899999999987653 36777765443
No 250
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3e-08 Score=94.88 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCC----------CCcceEEE--ecCCCCeEEEEEcCCCCEEEEEe-CC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD----------SNEPLISK--KVHMGPVKVMRYNPVFDTVISAD-DK 78 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~----------~~~~~~~l--~~h~~~V~~l~fspd~~~l~s~s-~d 78 (485)
.|++|-..+. ..+++++ -+-|.||..... +..+...+ +|| .+|++++|++||..++++| .|
T Consensus 144 tclawRPlsa---selavgC--r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 144 TCLAWRPLSA---SELAVGC--RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred eEEEeccCCc---ceeeeee--cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 4556654432 2455554 355999986410 11111222 366 7999999999999999998 56
Q ss_pred CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccchhH
Q 011473 79 GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR-TGKLRRVYDESLEV 157 (485)
Q Consensus 79 g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~-tg~~~~~~~~~~~~ 157 (485)
..|.+||+.++.. .++. ...-+.+.-+.|||||.+|..+.-|+..++|.-. +-.+.+-.
T Consensus 218 ssi~iWdpdtg~~------------~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~------ 277 (445)
T KOG2139|consen 218 SSIMIWDPDTGQK------------IPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI------ 277 (445)
T ss_pred ceEEEEcCCCCCc------------cccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee------
Confidence 8999999988543 2222 2334567889999999999999999999999532 22221111
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEc
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNL 219 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~ 219 (485)
.....+.+.+|||.|++|++++...-.++.+
T Consensus 278 -------------------------------lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 278 -------------------------------LGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred -------------------------------ccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 0011346889999999999999887667665
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=6.8e-09 Score=103.77 Aligned_cols=249 Identities=17% Similarity=0.256 Sum_probs=153.0
Q ss_pred ceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 25 AGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
..-.+|++.|++|++|.++.+ +..+..++..|+.+|.++.|-.+.+.++|+ ||.|.+||+--+..... +.|
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq-~~d- 822 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQ-MED- 822 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHh-hhc-
Confidence 345788899999999998742 234677888999999999999999988877 78999999865433221 001
Q ss_pred EcCCCceEEeecCC--ccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 100 LKSDTNLFEILKSK--TTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~~~~~--~~v~~i~~spdg~~lat~-s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
-.+|. ..|.|+ =+-|...+..| +...+|+++|.++++-...+.-. -+..|
T Consensus 823 ---------apk~~a~~~ikcl-~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc------na~~P----------- 875 (1034)
T KOG4190|consen 823 ---------APKEGAGGNIKCL-ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC------NAPGP----------- 875 (1034)
T ss_pred ---------CcccCCCceeEec-ccCcchheeeeccchhhheeeecccccceeeEEec------cCCCC-----------
Confidence 11222 122222 22255555555 57899999999988754443110 00001
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
......++.-+.|+.|+.+-..| |-+.|..+|+++..++..+ ...++++.
T Consensus 876 --------------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme--cdllqlaa------------- 926 (1034)
T KOG4190|consen 876 --------------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME--CDLLQLAA------------- 926 (1034)
T ss_pred --------------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc--chhhhhcC-------------
Confidence 11234788889999999887666 9999999999887665544 22222211
Q ss_pred eccccccccCCCCCCCCeEEEeeecCceEEE-EecCCCCCCCccCCCccccCCCCCccc--ccccccCCCCccCCCCCEE
Q 011473 256 PAAAANANESKEPFSDPTLLCCAFKRHRIYL-FSRREPEEPEDATKGRDIFNEKPPPDE--LLAVSDIGNSVTTSLPDNV 332 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~-f~~~~~~~~~~~~~~rd~~n~~p~~e~--~~~~~~~~~~~~~~~~~~~ 332 (485)
|....+++.--|..+-+ |++-.. +--+..+|++|. +.... + +..|
T Consensus 927 --------------psdq~L~~saldHslaVnWhaldg---------imh~q~kpppepahflqsv--g-------pSLV 974 (1034)
T KOG4190|consen 927 --------------PSDQALAQSALDHSLAVNWHALDG---------IMHLQDKPPPEPAHFLQSV--G-------PSLV 974 (1034)
T ss_pred --------------chhHHHHhhcccceeEeeehhcCC---------eeeeccCCCCcchhhhhcc--C-------ceeE
Confidence 44455667777888888 987543 333445555442 32222 1 1122
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC
Q 011473 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN 368 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g 368 (485)
....|.+ +.+|.+.+-.+++.=+.-.+..-|.|
T Consensus 975 --~a~~Gn~-lgVYad~a~~ha~stitKiR~d~f~G 1007 (1034)
T KOG4190|consen 975 --TAQNGNI-LGVYADSAELHAESTITKIRPDEFPG 1007 (1034)
T ss_pred --EeccCcE-EEEEecchhhhhhhhhccccccccCC
Confidence 2333543 57888888777765544444444444
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=2.8e-08 Score=100.14 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCcc
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 115 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (485)
.|+-.++. .+..+..|....+.+++|..++-..+|+.|..+|.|..||.++-..... .++.+.-+-.........
T Consensus 156 evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~---l~~~~~v~s~pg~~~~~s 230 (703)
T KOG2321|consen 156 EVYRLNLE--QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT---LDAASSVNSHPGGDAAPS 230 (703)
T ss_pred ceEEEEcc--ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee---eecccccCCCccccccCc
Confidence 46666775 7788888887889999999999999999999999999999987443322 000000000111122345
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCc
Q 011473 116 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 195 (485)
Q Consensus 116 v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 195 (485)
|+++.|+.||-.+++|..+|.|.|||+++.+.+..=+. . ...++.
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--------------~---------------------~e~pi~ 275 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--------------G---------------------YELPIK 275 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--------------C---------------------Ccccee
Confidence 99999999999999999999999999999887543211 0 112334
Q ss_pred eEEECCC--CCEEEEecCCCeEEEEcccCeEEEeecc
Q 011473 196 NAIFDES--SNFLIYATLLGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 196 ~i~fd~~--g~~l~~~s~~~i~v~d~~tg~~v~~~~~ 230 (485)
.+.|-+. ++-|++.-..-+||||-.+|+....++.
T Consensus 276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred eecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 6666444 3344444444589999999997665544
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.6e-08 Score=99.82 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=101.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+.+..++|=|...|.|.+|++. .++.-..+. .|.++|+++.++.+..+|-|++.|+.+.+|+..+.+.
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~--~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-------- 136 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVA--GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-------- 136 (541)
T ss_pred cCCceEEEeecCCccEEEEEec--CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--------
Confidence 3355566667778999999997 667777776 7999999999999999999999999999999876433
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
...+...+..+.+++++|||+.++++| +.|++||+++++.+.+|.+|...++
T Consensus 137 ------~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 137 ------IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVR 188 (541)
T ss_pred ------eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceE
Confidence 333667778899999999999999887 7899999999999999988776665
No 254
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.8e-07 Score=96.93 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++. ..+..
T Consensus 176 ~~L~~~D~d---G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---------------~~l~~ 237 (427)
T PRK02889 176 YQLQISDAD---GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---------------RVVAN 237 (427)
T ss_pred cEEEEECCC---CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------------EEeec
Confidence 356666663 44456667788899999999999988877643 3588889876431 11222
Q ss_pred CCccEEEEEEcCCCCEEEE-EeCCCcEEEEE--CCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 112 SKTTVSAIEVSPDGKQFSI-TSPDRRIRVFW--FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat-~s~D~~I~iwd--~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
......+.+|||||+.|+. .+.++..+||. +.+++. +.+..
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------------------------------- 281 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------------------------------- 281 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCC-----------------------------------
Confidence 3344668899999998874 56787766664 444432 22211
Q ss_pred cCCCCCceEEECCCCCEEEEecCC-C-eEEEEc
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL-G-IKIVNL 219 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~-~-i~v~d~ 219 (485)
......+..|+|||++|++.+.. + .++|..
T Consensus 282 -~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 282 -SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred -CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 00112357899999999987763 2 566643
No 255
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=6.2e-08 Score=103.73 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=126.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecC---CCCeEEEEEcC--CCCEEEEEeCCCcEEEEc-CCCC-CCCCceeEEE
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVH---MGPVKVMRYNP--VFDTVISADDKGIIEYWS-PHTL-QFPESEVSFR 99 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h---~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd-~~t~-~~~~~~~~~~ 99 (485)
.++++.+..+|++||.+ .++.+..|..+ ...|+.+.+-. |..++++|+.||.||||+ -.+. +.++-.-.|.
T Consensus 1078 ~i~~ad~r~~i~vwd~e--~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWE--KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred eeEEcCCcceEEEEecc--cCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 45555556789999997 66777767643 45788888754 445899999999999994 3332 1111111121
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
-- +.+ +.+..+.=.-++|-....+|.++|.-+.|||||....++++.+.-..
T Consensus 1156 ~L--s~~--~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s------------------------ 1207 (1387)
T KOG1517|consen 1156 SL--SDQ--LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS------------------------ 1207 (1387)
T ss_pred cc--ccc--CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC------------------------
Confidence 10 000 11111111335788877777777778999999999888776653210
Q ss_pred hhhhHhhhccCCCCCceEE-ECCCCCEEEEecCCC-eEEEEccc---CeEEEeecccCCccceeeeeeccCCccCcceee
Q 011473 180 MAVEKEIEKTETAPPSNAI-FDESSNFLIYATLLG-IKIVNLHT---NKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~-fd~~g~~l~~~s~~~-i~v~d~~t---g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
...+.+++ ....|+.|+.|..|| ++++|... .-.+.+++.|....+.+.+++=..
T Consensus 1208 -----------~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~--------- 1267 (1387)
T KOG1517|consen 1208 -----------STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ--------- 1267 (1387)
T ss_pred -----------CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC---------
Confidence 00112222 233589999999998 99999764 335677777765555555555321
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011473 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
... -++||+.|+.|++|+-|-+
T Consensus 1268 ---------------G~~-elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1268 ---------------GLG-ELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ---------------CCc-ceeeeccCCeEEEEecccC
Confidence 111 3789999999999999874
No 256
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.5e-08 Score=99.06 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=135.4
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC--E
Q 011473 50 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK--Q 127 (485)
Q Consensus 50 ~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~--~ 127 (485)
-..+.||++.|.+|...|.|.+|+||+.||++++|.+.|+.+.. .+.- .+.|.|++|+|.+. .
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr--------------~~~~-d~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR--------------TVQF-DSEIRSVAWNPLSDLCV 457 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE--------------EEee-cceeEEEEecCCCCcee
Confidence 34567999999999999999999999999999999999865443 3332 23599999999775 3
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccchhHHHhh-h-cCCC---cccccccccccchhhhhHh--hhccCCCCCceEEEC
Q 011473 128 FSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDL-Q-RSDA---PLYRLEAIDFGRRMAVEKE--IEKTETAPPSNAIFD 200 (485)
Q Consensus 128 lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~-~-~~~~---~~~~~~~~~~g~~~~~~~~--i~~~~~~~~~~i~fd 200 (485)
||++ .+..+-|-+..=|..+...... ..+... . ..++ ..|.-.+.+. .++. +.....-++..+.|+
T Consensus 458 LAvA-~~~~~~ivnp~~G~~~e~~~t~-ell~~~~~~~~p~~~~~~W~~~~~~e-----~~~~v~~~I~~~k~i~~vtWH 530 (733)
T KOG0650|consen 458 LAVA-VGECVLIVNPIFGDRLEVGPTK-ELLASAPNESEPDAAVVTWSRASLDE-----LEKGVCIVIKHPKSIRQVTWH 530 (733)
T ss_pred EEEE-ecCceEEeCccccchhhhcchh-hhhhcCCCccCCcccceeechhhhhh-----hccceEEEEecCCccceeeee
Confidence 4443 3444777776666332221000 001100 0 0010 1111110000 0111 223445567899999
Q ss_pred CCCCEEEEecCC----CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEE
Q 011473 201 ESSNFLIYATLL----GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 276 (485)
Q Consensus 201 ~~g~~l~~~s~~----~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 276 (485)
..|.||++-+.+ .|-|.++..++..--+.... -.++...|+. ..+.||+
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHP------------------------s~p~lfV 583 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHP------------------------SKPYLFV 583 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccccCchhhcC---CceeEEEecC------------------------CCceEEE
Confidence 999999997764 34454544433222221111 2344456653 6688999
Q ss_pred eeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeE-EEEEecCCCCh
Q 011473 277 CAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGD-IHMKLYPEECP 351 (485)
Q Consensus 277 s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~-i~i~L~~~~aP 351 (485)
+.-..-|||=+.+++ .+.+. .+--.+.... .--..++.+++.+..++ +.++|.-..-|
T Consensus 584 aTq~~vRiYdL~kqe--lvKkL----------~tg~kwiS~m-----sihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 584 ATQRSVRIYDLSKQE--LVKKL----------LTGSKWISSM-----SIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred EeccceEEEehhHHH--HHHHH----------hcCCeeeeee-----eecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 998999999888753 22110 0000011111 01235677888888887 66777766556
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.89 E-value=1.8e-07 Score=96.61 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeEEEEcCCCceEEee
Q 011473 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 110 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~ 110 (485)
...|.++|.. +...+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++. ..+.
T Consensus 169 ~~~l~~~d~~---g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------~~~~ 230 (417)
T TIGR02800 169 RYELQVADYD---GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------EKVA 230 (417)
T ss_pred cceEEEEcCC---CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------EEee
Confidence 3457778874 33456666777789999999999998877643 4788999876431 1133
Q ss_pred cCCccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhh
Q 011473 111 KSKTTVSAIEVSPDGKQFSIT-SPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 187 (485)
Q Consensus 111 ~~~~~v~~i~~spdg~~lat~-s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 187 (485)
.+...+.+++|+|||+.|+.. +.++ .|++||+.+++..+....
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---------------------------------- 276 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG---------------------------------- 276 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC----------------------------------
Confidence 344456778999999988654 4443 688999988765322110
Q ss_pred ccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEE
Q 011473 188 KTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVS 225 (485)
Q Consensus 188 ~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v 225 (485)
.....+..|+|+|+.|++.+.. .|.++|+.+++..
T Consensus 277 ---~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 277 ---PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred ---CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 0011356899999999887753 2667777766643
No 258
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.88 E-value=9.4e-08 Score=90.25 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=118.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcC-CCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDAR-ADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~-~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.|....+++++.|...++|... .++-++.-.|..|...+++|.|+|..+.+|.+|.-..|.+|-.+... . -|.-
T Consensus 64 ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---d--WWVs 138 (361)
T KOG1523|consen 64 APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---D--WWVS 138 (361)
T ss_pred cCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---c--eehh
Confidence 4556679999999999999983 23345556667899999999999999999999999999998443200 0 0100
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
| +.-+.+.+.|++++|+|++-+||+||.|++.|||.. -++.+|+.. ....+|.++
T Consensus 139 K-----hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa----yIK~Vdekp----------------ap~pWgsk~ 193 (361)
T KOG1523|consen 139 K-----HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA----YIKGVDEKP----------------APTPWGSKM 193 (361)
T ss_pred h-----hhCCccccceeeeeccCCcceecccccCcceeEEEE----eeeccccCC----------------CCCCCccCC
Confidence 0 001234567999999999999999999999999974 334444421 111123332
Q ss_pred hhhHhhhc--cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011473 181 AVEKEIEK--TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 181 ~~~~~i~~--~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
-....|.+ ....-+..+.|+|+|..|++.+.++ +.+-|....
T Consensus 194 PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 194 PFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 22222222 2334457899999999999999887 888887654
No 259
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.86 E-value=1.5e-07 Score=89.13 Aligned_cols=233 Identities=16% Similarity=0.182 Sum_probs=135.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCC-----CCc---
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQF-----PES--- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~-----~~~--- 94 (485)
....+...+.|+.|.+|++. ..+--..+.....++.+++|||||+ +|.+...|-.|.+|.+.|.+. |+.
T Consensus 60 s~~ilC~~yk~~~vqvwsl~--Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLV--QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK 137 (447)
T ss_pred ceeeeeeeeccceEEEEEee--cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce
Confidence 34566677789999999996 4445566777788999999999996 566777899999997766432 111
Q ss_pred eeEEE-------------------------------EcCC-------------CceEEe---------ecC-CccEEEEE
Q 011473 95 EVSFR-------------------------------LKSD-------------TNLFEI---------LKS-KTTVSAIE 120 (485)
Q Consensus 95 ~~~~~-------------------------------~~~~-------------~~l~~~---------~~~-~~~v~~i~ 120 (485)
.+.|. ++.+ ..+..+ .-+ .-.+..++
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEE
Confidence 11110 0000 001000 001 13467789
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEe------ccch-hHH------------HhhhcCCCcccccccccccchhh
Q 011473 121 VSPDGKQFSITSPDRRIRVFWFRTGKLRRVY------DESL-EVA------------QDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 121 ~spdg~~lat~s~D~~I~iwd~~tg~~~~~~------~~~~-~~i------------~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
|||.+++||.|+.|+.+||-+--|-+....| .++. ..+ .++++.+. +.+....
T Consensus 218 wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~--------~~~a~~~ 289 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT--------DLEAHIW 289 (447)
T ss_pred eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC--------ccccCcc
Confidence 9999999999999999999876665543333 1111 111 12222221 1111110
Q ss_pred hhH----h----------hhc-----cCCCCCceEEECCCCCEEEEecCC--C-eEEEEcccCeEEEeecccCCccceee
Q 011473 182 VEK----E----------IEK-----TETAPPSNAIFDESSNFLIYATLL--G-IKIVNLHTNKVSRILGKVENNDRFLR 239 (485)
Q Consensus 182 ~~~----~----------i~~-----~~~~~~~~i~fd~~g~~l~~~s~~--~-i~v~d~~tg~~v~~~~~~~~~~r~~~ 239 (485)
.++ | ++. .-......++|++|..|+++-.+. . +=+||++.-++-.++...+ ++|.
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-pira-- 366 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-PIRA-- 366 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc-ceeE--
Confidence 011 1 110 012224578999999999998764 3 7899998877765554444 4451
Q ss_pred eeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011473 240 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
|+- ++.-|.|+++ -+..|+|+|+..-|.-+
T Consensus 367 ---f~W----------------------dP~~prL~vc-tg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 367 ---FEW----------------------DPGRPRLVVC-TGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ---EEe----------------------CCCCceEEEE-cCCceEEEEcCCCceEE
Confidence 221 1122343333 34678999988665544
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.86 E-value=6e-07 Score=92.71 Aligned_cols=150 Identities=14% Similarity=0.099 Sum_probs=97.0
Q ss_pred CCCCcceEEEEeCC---CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEcCCCCCCCC
Q 011473 20 QGDVKAGLAISDRN---SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKG--IIEYWSPHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs~s~---d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg--~i~~Wd~~t~~~~~ 93 (485)
.++|++..++..+. ...|++||+. ++.. ..+..+...+.+++|+||++.|+ +.+.++ .|.+||+.+++
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~--~g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--- 269 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLA--TGQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--- 269 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECC--CCCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---
Confidence 35667766654432 2579999996 4432 33445666777899999998665 555555 47777876532
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-R--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D-~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
...+..+.......+|+|||++|+..+.. + .|.+||+.+++..+....
T Consensus 270 ------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~----------------- 320 (417)
T TIGR02800 270 ------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR----------------- 320 (417)
T ss_pred ------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-----------------
Confidence 22233344445567899999998876643 2 588888877765322110
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeE
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKV 224 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~ 224 (485)
.......+|+|+|++|++++.. .|.+||+.++..
T Consensus 321 --------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 321 --------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred --------------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 0112467899999999998765 377888877654
No 261
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=102.05 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=116.9
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEe-ecCCccEEEEEEcC--CCC
Q 011473 50 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSP--DGK 126 (485)
Q Consensus 50 ~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~i~~sp--dg~ 126 (485)
...|.||++=|+||.|+.+|.+|+|||.|-.+.|||.-..++. +.+ .+|.+.|.++.|-| ..+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------hsI~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------HSISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--------------eeeecccccceeEEeeeccCCCe
Confidence 4567899999999999999999999999999999998653332 223 47999999999999 557
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEE---eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCC
Q 011473 127 QFSITSPDRRIRVFWFRTGKLRRV---YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 203 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g 203 (485)
.++||+.|..|++||+...+.-.. ..+....+. .....+..|+-.|++
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-----------------------------cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-----------------------------CHTDRVKRIATAPNG 159 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhh-----------------------------hhhhhhhheecCCCC
Confidence 889999999999999986442110 001010000 011112355666777
Q ss_pred -CEEEEecCCC-eEEEEcccCeEEE-eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeec
Q 011473 204 -NFLIYATLLG-IKIVNLHTNKVSR-ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFK 280 (485)
Q Consensus 204 -~~l~~~s~~~-i~v~d~~tg~~v~-~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~ 280 (485)
+.+.+++.+| |+=+|+..-.... ..+-+ .+.+. |... ...+.+..+ +..+|-+||-|..
T Consensus 160 PhtfwsasEDGtirQyDiREph~c~p~~~~~---~~l~n---y~~~--lielk~lti----------sp~rp~~laVGgs 221 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCP---SILVN---YNPQ--LIELKCLTI----------SPSRPYYLAVGGS 221 (758)
T ss_pred CceEEEecCCcceeeecccCCccCCcccccc---HHHHH---hchh--hheeeeeee----------cCCCCceEEecCC
Confidence 7788889888 8989886421110 00000 11111 1111 111222211 2367889999999
Q ss_pred CceEEEEecCC
Q 011473 281 RHRIYLFSRRE 291 (485)
Q Consensus 281 d~~i~~f~~~~ 291 (485)
|--.+||++|.
T Consensus 222 dpfarLYD~Rr 232 (758)
T KOG1310|consen 222 DPFARLYDRRR 232 (758)
T ss_pred Cchhhhhhhhh
Confidence 99999999543
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.9e-07 Score=90.28 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=138.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCC-EEEEEeCC--CcEEEEcCCCCCCCCceeEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFD-TVISADDK--GIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~d--g~i~~Wd~~t~~~~~~~~~~ 98 (485)
++.++ ++-.+|.+.+|..+.+. ..++..+..| .++..|.-+|... .+++|+.. ..+++||++..+ ..|
T Consensus 115 dg~Li-tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-----qiw 187 (412)
T KOG3881|consen 115 DGTLI-TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-----QIW 187 (412)
T ss_pred CCEEE-EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce-----eee
Confidence 44444 44468999999986333 3455555544 5677788777665 55568888 789999997642 134
Q ss_pred EEcCCC-ceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCcccccccc
Q 011473 99 RLKSDT-NLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 99 ~~~~~~-~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
+-|.-. +...+. -.-.++++.|-|. ...||++..-+.+|+||++.++. +..++-
T Consensus 188 ~aKNvpnD~L~Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--------------------- 245 (412)
T KOG3881|consen 188 SAKNVPNDRLGLR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--------------------- 245 (412)
T ss_pred eccCCCCccccce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc---------------------
Confidence 332211 111111 1234678899887 89999999999999999987653 333321
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEe-ecccCCccceeeeeeccCCccCcce
Q 011473 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI-LGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~-~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
...+++++...|+|++|++|...+ +..+|+.+++++.. +++-.+++|.+..
T Consensus 246 ---------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~------------ 298 (412)
T KOG3881|consen 246 ---------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC------------ 298 (412)
T ss_pred ---------------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE------------
Confidence 012456889999999999998876 99999999998855 7777777774433
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCC
Q 011473 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 296 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~ 296 (485)
-|...++||++-|..++||+-+.-+...
T Consensus 299 ----------------hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 299 ----------------HPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred ----------------cCCCceEEeeccceeEEEeecccchhhh
Confidence 1555689999999999999987644443
No 263
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.82 E-value=2.2e-09 Score=111.95 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=93.1
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE
Q 011473 52 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 52 ~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~ 131 (485)
.|.||..+|.|+.|...|.++++++.|..++||..++.. ++...+||.+.++.++.+....++|++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------~lAs~rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------CLASCRGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh--------------hhccCCCCccccchhccchhhhhhhhc
Confidence 355899999999999999999999999999999988844 455599999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011473 132 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 132 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
|.|..||+|-+.+|..+..+.+|...+++++++|-+
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~ 286 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA 286 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhccccceeeeccCccc
Confidence 999999999999999999999999999999888753
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=5.3e-08 Score=104.32 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=126.9
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCe-----EEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPV-----KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V-----~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.++....++.+-|||.. ....+..+ .|...+ .-+-++++.-++++++.-+.|.+|+..--+.|.
T Consensus 101 ~i~l~~~~ns~~i~d~~--~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------- 169 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSK--NSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------- 169 (967)
T ss_pred eEEEEEcCceEEEEecc--cCceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--------
Confidence 34444457889999986 33333333 233222 223456666689999999999999876322221
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
.+.+|.+.+.++.||-||+++++.|.|+++|+|++.+++.... ..||
T Consensus 170 ------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-----------------------~~fg---- 216 (967)
T KOG0974|consen 170 ------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-----------------------TGFG---- 216 (967)
T ss_pred ------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-----------------------cccc----
Confidence 4889999999999999999999999999999999999886530 0001
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
+.+.++.+.|+|+ .|++++.+. .++|+. .++.+.++.+|.. |-+..-+.
T Consensus 217 --------HsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g--~~iw~~~~----------------- 266 (967)
T KOG0974|consen 217 --------HSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSG--KGIWKIAV----------------- 266 (967)
T ss_pred --------ccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhh--cceeEEEE-----------------
Confidence 1223478899998 899999886 789944 4666668877762 31111111
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEec
Q 011473 261 NANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.++..++.|+..|+++++|+.
T Consensus 267 --------~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 267 --------PIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred --------cCCceEEEeeccCcchhhhhh
Confidence 167788999999999999987
No 265
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=8.1e-08 Score=92.86 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=117.8
Q ss_pred CcceEEEEeCCC--CeEEEEEcCCCCCcceEEEe-------cCCC--CeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCC
Q 011473 23 VKAGLAISDRNS--SFVHIYDARADSNEPLISKK-------VHMG--PVKVMRYNPV--FDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 23 ~~~~l~vs~s~d--~~I~iwd~~~~~~~~~~~l~-------~h~~--~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
..+.++++|+.. ..+.|||+. ..+.+.+-+ +-.- .++++.|-|. ...||++..-+.+|+||+..+
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle--~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q 236 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLE--QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ 236 (412)
T ss_pred CCCceEecCchhcccceeeeecc--cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence 355677778777 789999997 333333321 1122 3568899987 789999999999999999875
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccchhHHHhhhcCCCcc
Q 011473 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV-YDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~-~~~~~~~i~~~~~~~~~~ 168 (485)
+-| +..+.--..+++++...|+|+.+.+|..-+.+..||.++++++.. +.+
T Consensus 237 RRP-------------V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg--------------- 288 (412)
T KOG3881|consen 237 RRP-------------VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG--------------- 288 (412)
T ss_pred Ccc-------------eeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC---------------
Confidence 444 333444456799999999999999999999999999999998765 432
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEe
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 227 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~ 227 (485)
-...+.+|.-+|++++|++++.|. ++|+|+.|.+++..
T Consensus 289 ---------------------~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 289 ---------------------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ---------------------ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 112335888899999999999997 99999999887643
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=4.2e-08 Score=93.34 Aligned_cols=225 Identities=19% Similarity=0.283 Sum_probs=137.4
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCc---------------------------------ceEEEe-cCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE---------------------------------PLISKK-VHM 57 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~---------------------------------~~~~l~-~h~ 57 (485)
..+.|+.... ...+++++ .|++|++|.+.....+ |.+.+. +|.
T Consensus 88 nkIrw~~~~n--~a~FLlst-NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 88 NKIRWLDDGN--LAEFLLST-NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhceecCCCC--ccEEEEec-CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4567775532 22344444 7999999988521111 111222 688
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCC-----ccEEEEEEcCC-CCEEEEE
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK-----TTVSAIEVSPD-GKQFSIT 131 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~i~~spd-g~~lat~ 131 (485)
-.|+++.++.|.+.++|++ |=.|.+|.++--.. .| .+..++.+. ..+++..|+|. ...|+-.
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-----sF------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-----SF------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCC-----ce------eEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 8999999999999999987 67899997753110 01 112222222 44788899994 5678888
Q ss_pred eCCCcEEEEECCCCcEE----EEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEE
Q 011473 132 SPDRRIRVFWFRTGKLR----RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 207 (485)
Q Consensus 132 s~D~~I~iwd~~tg~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~ 207 (485)
++.|+||+-|++...+- +.+.+...+ +.|.-. .+ ....++.+.|+++|+||+
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp-------------------~~rsff-se----iIsSISDvKFs~sGryil 288 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDP-------------------SSRSFF-SE----IISSISDVKFSHSGRYIL 288 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCC-------------------cchhhH-HH----HhhhhhceEEccCCcEEE
Confidence 88999999999864431 111111111 001000 01 112346889999999999
Q ss_pred EecCCCeEEEEc-ccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 011473 208 YATLLGIKIVNL-HTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 286 (485)
Q Consensus 208 ~~s~~~i~v~d~-~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~ 286 (485)
+-..-.+|+||+ ...+.+.++.-|+ -.|.-.-++|....- . .+-+-.++ -+...++||+-.+-|++
T Consensus 289 sRDyltvk~wD~nme~~pv~t~~vh~-~lr~kLc~lYEnD~I----f-------dKFec~~s-g~~~~v~TGsy~n~frv 355 (433)
T KOG1354|consen 289 SRDYLTVKLWDLNMEAKPVETYPVHE-YLRSKLCSLYENDAI----F-------DKFECSWS-GNDSYVMTGSYNNVFRV 355 (433)
T ss_pred EeccceeEEEeccccCCcceEEeehH-hHHHHHHHHhhccch----h-------heeEEEEc-CCcceEecccccceEEE
Confidence 999999999999 5677888887776 334223344432100 0 00011122 34556899999999999
Q ss_pred Ee
Q 011473 287 FS 288 (485)
Q Consensus 287 f~ 288 (485)
|+
T Consensus 356 f~ 357 (433)
T KOG1354|consen 356 FN 357 (433)
T ss_pred ec
Confidence 98
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.6e-06 Score=90.11 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
.|.++|.. +...+.+..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++. ..+...
T Consensus 180 ~l~~~d~~---g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---------------~~l~~~ 241 (430)
T PRK00178 180 TLQRSDYD---GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------------EQITNF 241 (430)
T ss_pred EEEEECCC---CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---------------EEccCC
Confidence 47777775 33355666788899999999999988876643 3577778876431 112222
Q ss_pred CccEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhcc
Q 011473 113 KTTVSAIEVSPDGKQFSI-TSPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 189 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat-~s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~ 189 (485)
...+...+|||||++|+. .+.++ .|++||+.+++..+....
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~------------------------------------ 285 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH------------------------------------ 285 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC------------------------------------
Confidence 233556899999999874 44444 688889988875332110
Q ss_pred CCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEE
Q 011473 190 ETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSR 226 (485)
Q Consensus 190 ~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~ 226 (485)
.....+..|+|+|+.|++.+.. .|.++|+.+|+..+
T Consensus 286 -~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 286 -PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred -CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 0012356899999999988753 36777887776533
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=2.1e-06 Score=89.21 Aligned_cols=150 Identities=12% Similarity=0.054 Sum_probs=94.3
Q ss_pred CCCCcceEEEE-eCCC--CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCC--cEEEEcCCCCCCCC
Q 011473 20 QGDVKAGLAIS-DRNS--SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKG--IIEYWSPHTLQFPE 93 (485)
Q Consensus 20 ~~~~~~~l~vs-~s~d--~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg--~i~~Wd~~t~~~~~ 93 (485)
.++|++..++. ...+ ..|.+||+. +++. ..+....+.+.+.+|+|||+.|+ +.+.++ .|.+||+.+++
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~--~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--- 278 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLD--TGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--- 278 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECC--CCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---
Confidence 45667665543 3232 368889986 4432 23333344456789999999776 566666 45666876533
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-D--RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D--~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
+..+..+........|||||+.++..+. + ..|+++|+.+++..+....
T Consensus 279 ------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----------------- 329 (430)
T PRK00178 279 ------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----------------- 329 (430)
T ss_pred ------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-----------------
Confidence 2223344445667889999998877664 3 3577888888875332110
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeE
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKV 224 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~ 224 (485)
+ .......|+|+|++|++.+.. .|.+||+.+++.
T Consensus 330 ------~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 330 ------G--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred ------C--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 0 011256799999999988753 267888887764
No 269
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=3.9e-07 Score=96.25 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=108.0
Q ss_pred CCeEEEEEcCCCCC-cceEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE-cCCCCCCCCceeEEEEcCCCceEEee
Q 011473 34 SSFVHIYDARADSN-EPLISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYW-SPHTLQFPESEVSFRLKSDTNLFEIL 110 (485)
Q Consensus 34 d~~I~iwd~~~~~~-~~~~~l-~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W-d~~t~~~~~~~~~~~~~~~~~l~~~~ 110 (485)
+..+.+|..+..+. ...+.. ..|...+++.++||.++++|+++.||.|.+| |... +-. ......+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~----------~~t~t~lH 248 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDD----------SETCTLLH 248 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-ccc----------cccceEEE
Confidence 56789999872111 011111 1588889999999999999999999999999 4331 000 11112244
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccC
Q 011473 111 KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 190 (485)
Q Consensus 111 ~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~ 190 (485)
=|...|.+++||+||.+|.+||..+-+-+|.+.|++ +.|= .|+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-------------------------PRL---------- 291 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-------------------------PRL---------- 291 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc-------------------------ccc----------
Confidence 477889999999999999999999999999999988 3331 111
Q ss_pred CCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccC
Q 011473 191 TAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 191 ~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~ 232 (485)
..++..+.++||+.+-+....| .|++....+.++..++.+-.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 1244588999999976666665 49999888877777776543
No 270
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.73 E-value=4e-07 Score=99.14 Aligned_cols=181 Identities=14% Similarity=0.212 Sum_probs=112.3
Q ss_pred EEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEE
Q 011473 40 YDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSA 118 (485)
Q Consensus 40 wd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 118 (485)
|.. .|..+..|..|+..|..++.++.. .+++|||.||+|++|+......... + -....++......+.+
T Consensus 1034 W~p---~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--s-----~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1034 WNP---RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--S-----ARSELTYSPEGSRVEK 1103 (1431)
T ss_pred CCc---cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--e-----eeeeEEEeccCCceEE
Confidence 665 477888888999999999988766 8999999999999998754221110 0 0111123334466889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEeccch--hHHHhhhc---CCC--cccccc---cccccchhh
Q 011473 119 IEVSPDGKQFSITSPDRRIRVFWFRTGK-------LRRVYDESL--EVAQDLQR---SDA--PLYRLE---AIDFGRRMA 181 (485)
Q Consensus 119 i~~spdg~~lat~s~D~~I~iwd~~tg~-------~~~~~~~~~--~~i~~~~~---~~~--~~~~~~---~~~~g~~~~ 181 (485)
+...+.|..||.++.||.|++.++.-.+ +.+..+..- ..+..-++ ... -+|... -..++.|+.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 9999999999999999999999987521 222221110 01110010 000 001000 001111111
Q ss_pred h-hHhhhcc-CCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011473 182 V-EKEIEKT-ETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 182 ~-~~~i~~~-~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
. .+.++.. ....+++++-||-+++++.|+..| +-+||+.=+.++.....
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC
Confidence 1 1222222 233468999999999999999998 79999988887766644
No 271
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.72 E-value=3.3e-07 Score=91.79 Aligned_cols=142 Identities=18% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011473 69 FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 69 ~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
.+.++.++.||.+.+-+- .++..+ ....|.+.+.|-.|+|||.-|+|++.||.|++|. ++|-+.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~--------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLR 138 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVER--------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLR 138 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhh--------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHH
Confidence 357888999999888642 222222 2678999999999999999999999999999997 444331
Q ss_pred EEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEee
Q 011473 149 RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRIL 228 (485)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~ 228 (485)
.++ + ....++-+++|+|+++-++++..+.+.+=-+.-+--+-..
T Consensus 139 Stl----------~--------------------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~W 182 (737)
T KOG1524|consen 139 STV----------V--------------------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRW 182 (737)
T ss_pred HHH----------h--------------------------hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEE
Confidence 111 0 1122345899999999999987776555444433333334
Q ss_pred cccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 229 GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 229 ~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
..|++ +.++| .|+ +-+-+++||.+|.++++|+..
T Consensus 183 kAHDG----iiL~~-----------------------~W~-~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 183 RAHDG----LVLSL-----------------------SWS-TQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred eccCc----EEEEe-----------------------ecC-ccccceeecCCceeEEeeccc
Confidence 45552 22222 222 667789999999999999875
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=4.4e-08 Score=64.89 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=36.4
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEc
Q 011473 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 85 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd 85 (485)
++++++.+|.++|++|+|+|++.+|+|++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999996
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=4.6e-06 Score=87.02 Aligned_cols=136 Identities=22% Similarity=0.135 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-KG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~-dg--~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
.+.++|.. +...+.+..+..++.+.+|||||+.|+..+. ++ .|.+||+.+++.. . +...
T Consensus 199 ~l~i~d~d---G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~------------~---lt~~ 260 (448)
T PRK04792 199 QLMIADYD---GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE------------K---VTSF 260 (448)
T ss_pred EEEEEeCC---CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE------------E---ecCC
Confidence 57777874 3334566677889999999999998876653 33 4666787664311 1 1111
Q ss_pred CccEEEEEEcCCCCEEEEE-eCCCc--EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhcc
Q 011473 113 KTTVSAIEVSPDGKQFSIT-SPDRR--IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKT 189 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~-s~D~~--I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~ 189 (485)
.......+|||||+.|+.. +.++. |++||+.+++..+....
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~------------------------------------ 304 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH------------------------------------ 304 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC------------------------------------
Confidence 2223467999999988754 55664 78888888775322110
Q ss_pred CCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEE
Q 011473 190 ETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSR 226 (485)
Q Consensus 190 ~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~ 226 (485)
.......+|+|||++|++.+.. .|.++|+.+|+..+
T Consensus 305 -~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 305 -RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred -CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 0112367899999999987753 26666777776544
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=2.3e-06 Score=88.62 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=95.5
Q ss_pred CCCcce-EEEEeCCCC----eEEEEEcCCCC-CcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEc--CCCCCC
Q 011473 21 GDVKAG-LAISDRNSS----FVHIYDARADS-NEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWS--PHTLQF 91 (485)
Q Consensus 21 ~~~~~~-l~vs~s~d~----~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd--~~t~~~ 91 (485)
++|++. ++.+.+.++ .+.+|++..+. +.+.+...++.......+|+|||+.|+..+ .+|..++|. +...
T Consensus 238 wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~-- 315 (428)
T PRK01029 238 FSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE-- 315 (428)
T ss_pred ECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--
Confidence 467764 444443322 34457765211 233333323334456789999999777655 577777773 2210
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD---RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D---~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 168 (485)
+.....+..+...+...+|||||++|+..+.+ ..|.+||+.+++.......
T Consensus 316 -----------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--------------- 369 (428)
T PRK01029 316 -----------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--------------- 369 (428)
T ss_pred -----------ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---------------
Confidence 11222344444556788999999999877653 4699999998886432211
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEee
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRIL 228 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~~ 228 (485)
.....+..|+|||++|++.+.. .|.+||+.+++..+..
T Consensus 370 ----------------------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 370 ----------------------PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred ----------------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 0012357899999999876542 3788898888765554
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=8.4e-06 Score=85.04 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=89.6
Q ss_pred CCCcceEEEEe-CCCC--eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEcCCCCCCCCc
Q 011473 21 GDVKAGLAISD-RNSS--FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGI--IEYWSPHTLQFPES 94 (485)
Q Consensus 21 ~~~~~~l~vs~-s~d~--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~--i~~Wd~~t~~~~~~ 94 (485)
++|++..++-. ..++ .|++||+. +++. ..+..........+|+|||+.|+ +.+.++. |.+||+++++
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~dl~--tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---- 297 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQDIY--TQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---- 297 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEECC--CCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----
Confidence 45666544433 3333 58888886 3332 22322223345789999999775 4667776 4445776532
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-D--RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D--~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+..+..+.......+|||||++++..+. + ..|.++|+.+++..+...+
T Consensus 298 -----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~------------------ 348 (448)
T PRK04792 298 -----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE------------------ 348 (448)
T ss_pred -----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC------------------
Confidence 2223344445677899999999887664 3 3577778887775432110
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-C---eEEEEcccCeE
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-G---IKIVNLHTNKV 224 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~---i~v~d~~tg~~ 224 (485)
.....+.+|+|+|++|++.+.. + |.++|+.+++.
T Consensus 349 -------------------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 349 -------------------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred -------------------CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 0011246899999999987653 2 44567777654
No 276
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.1e-07 Score=63.01 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=34.9
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.+..+.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567999999999999999999999999999999997
No 277
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=7.6e-06 Score=82.96 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=124.0
Q ss_pred CCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC-
Q 011473 11 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH--MGPVKVMRYNPVFDTVISADDKGIIEYWSPH- 87 (485)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h--~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~- 87 (485)
|.++.-+..+.+ ..+++++|--.-.|++||+. . +--.|+-| ...|...-.+.|...++---.|.+|.+....
T Consensus 51 p~ast~ik~s~D-GqY~lAtG~YKP~ikvydla--n--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 51 PTASTRIKVSPD-GQYLLATGTYKPQIKVYDLA--N--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred ccccceeEecCC-CcEEEEecccCCceEEEEcc--c--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 344444444332 34566677778899999996 2 23334444 3456666666676666666677888775211
Q ss_pred ---CCCCCCc---------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 88 ---TLQFPES---------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 88 ---t~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
+.++|+. .|-+++..+.-|..|....+.+++|..++--.+||+|+.||.|..||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1112211 2224444555566666667889999999999999999999999999999
Q ss_pred CCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011473 144 TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 144 tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
+...+.+++-... +. + .......+.++++.|+.+|=.+++|+..| +-|+|+.+.
T Consensus 206 ~ksrv~~l~~~~~-v~-------------s-----------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 206 DKSRVGTLDAASS-VN-------------S-----------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hhhhheeeecccc-cC-------------C-----------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 9887777643111 00 0 01112344578999999999999999988 999999988
Q ss_pred eEEEe
Q 011473 223 KVSRI 227 (485)
Q Consensus 223 ~~v~~ 227 (485)
+.+.+
T Consensus 261 ~pl~~ 265 (703)
T KOG2321|consen 261 KPLLV 265 (703)
T ss_pred Cceee
Confidence 86543
No 278
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=7.8e-06 Score=84.70 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred CCCCcce---EEEEeCCCC--eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCC----cEEEEcCCCC
Q 011473 20 QGDVKAG---LAISDRNSS--FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKG----IIEYWSPHTL 89 (485)
Q Consensus 20 ~~~~~~~---l~vs~s~d~--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg----~i~~Wd~~t~ 89 (485)
.++|++. ++.....++ .|.+.++. +++ ...+....+.....+|||||+.|+-.+ .+| .+..|++.++
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~--~g~-~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLE--NPA-GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECC--CCC-ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 3566653 222333443 46666776 332 223333344455689999998877554 333 3444665442
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CcEEEEeccchhHHHhhhcCC
Q 011473 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFW--FRT-GKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd--~~t-g~~~~~~~~~~~~i~~~~~~~ 165 (485)
.. +........+.......+|||||++|+..+ .++..+||. +.. +...+.+..
T Consensus 268 ~~-----------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~------------ 324 (428)
T PRK01029 268 AI-----------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK------------ 324 (428)
T ss_pred CC-----------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc------------
Confidence 10 111111222223345679999999988776 466555554 321 221221110
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEe
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRI 227 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~ 227 (485)
.........|+|||++|++.+.. .|.+||+.+|++.+.
T Consensus 325 ------------------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 325 ------------------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL 366 (428)
T ss_pred ------------------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence 00122467899999999987653 388999998876443
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.4e-06 Score=85.32 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCC
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 113 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s--~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (485)
++++.+++ ...+.-.| ...+||.++.|+|+++.++.+- .=..+-++|++ +..++.+ ..
T Consensus 252 ~Lyll~t~--g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---------------~~~v~df--~e 311 (566)
T KOG2315|consen 252 TLYLLATQ--GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---------------GKPVFDF--PE 311 (566)
T ss_pred eEEEEEec--CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---------------CCEeEeC--CC
Confidence 67777775 22333333 3468999999999998666543 44567777764 2333333 33
Q ss_pred ccEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccC
Q 011473 114 TTVSAIEVSPDGKQFSITS---PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTE 190 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s---~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~ 190 (485)
++-+++-|||.|++++.+| .-|.|-|||+.+.|++..++.
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a------------------------------------- 354 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA------------------------------------- 354 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-------------------------------------
Confidence 4568899999999999988 458999999999888755532
Q ss_pred CCCCceEEECCCCCEEEEecC-------CCeEEEEcccCeEEEee
Q 011473 191 TAPPSNAIFDESSNFLIYATL-------LGIKIVNLHTNKVSRIL 228 (485)
Q Consensus 191 ~~~~~~i~fd~~g~~l~~~s~-------~~i~v~d~~tg~~v~~~ 228 (485)
...+-..|+|||+|+++++. .++|||+. ||.+++..
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~ 397 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEK 397 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehh
Confidence 01135689999999999874 37999997 57766543
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.55 E-value=1.8e-07 Score=104.86 Aligned_cols=162 Identities=12% Similarity=0.188 Sum_probs=119.7
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC-----CCCCCc
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-----LQFPES 94 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t-----~~~~~~ 94 (485)
+.|...+-++|+.||.|++|... .++.+.++. +-.+.|+.+.|+.+|+.+..++.||.+.+|.+.. +++...
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~--~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWG--HGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNK 2293 (2439)
T ss_pred CCCCCceEEecCCCceEEEEecc--CCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCc
Confidence 34556677888899999999985 566677665 3338999999999999999999999999996542 111110
Q ss_pred -----------------------eeEEEE-cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011473 95 -----------------------EVSFRL-KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 95 -----------------------~~~~~~-~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
...|+. .....-+....|...++++++-|.-+.|.+||.+|.|++||++..+++++
T Consensus 2294 ~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2294 ALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred cccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 001211 11111122367888999999999999999999999999999998877655
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011473 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
+.. ++ ...+++.|+..| |+||++..-.+++++.
T Consensus 2374 ~~~---------------------------------------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2374 FQA---------------------------------------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hhh---------------------------------------------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 521 33 456778888887 9999998888887775
Q ss_pred c
Q 011473 230 K 230 (485)
Q Consensus 230 ~ 230 (485)
+
T Consensus 2408 ~ 2408 (2439)
T KOG1064|consen 2408 S 2408 (2439)
T ss_pred h
Confidence 4
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.52 E-value=2.5e-06 Score=79.94 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=82.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++.+.-++++..+|.+.+-+.....-+.+++++.|.-+.+-+.|+.. .+++.+|+.|+.+..||++ .|..
T Consensus 130 ~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R---~p~~------ 200 (339)
T KOG0280|consen 130 STSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR---IPKT------ 200 (339)
T ss_pred eccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec---CCcc------
Confidence 33344466666678888544431122344578899999999999874 4689999999999999987 2222
Q ss_pred cCCCceEE-eecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcE
Q 011473 101 KSDTNLFE-ILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRT-GKL 147 (485)
Q Consensus 101 ~~~~~l~~-~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~t-g~~ 147 (485)
.+.. -+.|...|.+|.=|| ++.+++||+.|-.|++||++. ++.
T Consensus 201 ----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 201 ----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 2222 456788899998887 689999999999999999984 443
No 282
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.50 E-value=6e-06 Score=83.63 Aligned_cols=107 Identities=15% Similarity=0.247 Sum_probs=76.4
Q ss_pred EEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 73 ISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 73 ~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
++-..++.|.+.|..+.+ .+..+......-..+.|+|||+++.+++.|+.|.++|+.++++++++.
T Consensus 10 V~~~~~~~v~viD~~t~~--------------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK--------------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp EEEGGGTEEEEEETTT-S--------------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred EEecCCCEEEEEECCCCe--------------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence 455678999999988744 334465544444567899999999999999999999999999998873
Q ss_pred cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeecc
Q 011473 153 ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~ 230 (485)
- |. ....+++|+||++|++++. ..+.++|..|.++++.+.-
T Consensus 76 ~-----------------------G~--------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 76 V-----------------------GG--------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp ------------------------SS--------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred c-----------------------CC--------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 2 10 1137899999999998875 3599999999999988854
No 283
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.49 E-value=1.7e-06 Score=90.68 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=103.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCC------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSN------EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~------~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+...++-|+++|.|.-=+-.+.+. +.+..+..|-++|.++.++|=+..+...+.|-+++||.....
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-------- 430 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-------- 430 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--------
Confidence 444566677899887722221111 223455678999999999997764444444999999965421
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
..+++.+..+...|++++|||.- ..||++..||.|.+||+.....--+. . .
T Consensus 431 -----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~-----s-----------~------- 482 (555)
T KOG1587|consen 431 -----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL-----S-----------Q------- 482 (555)
T ss_pred -----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc-----c-----------c-------
Confidence 34566677788889999999954 68899999999999998653321000 0 0
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
. -.......+.|+++|++|+.|...| +++|++.
T Consensus 483 ----------~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 ----------K-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ----------c-ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 0 0022345778999999999999988 9999885
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.45 E-value=8.3e-05 Score=74.04 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=87.1
Q ss_pred EEEEEeCCCCcceEEEEeCCCC-eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011473 14 VEWVYKQGDVKAGLAISDRNSS-FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~-~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+.+.+...++.+ +++ |..|| .+-|||.. +..+..+...-+.|.+|..+|+|+.++.+.....|.+.|+.++...
T Consensus 362 VrY~r~~~~~e~-~vi-gt~dgD~l~iyd~~---~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 362 VRYRRIQVDPEG-DVI-GTNDGDKLGIYDKD---GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred eEEEEEccCCcc-eEE-eccCCceEEEEecC---CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 556666666663 333 33566 89999985 3445667778889999999999999998877766666688875432
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEe
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR----RIRVFWFRTGKLRRVY 151 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~----~I~iwd~~tg~~~~~~ 151 (485)
.- -+..-+-++..+|||+++++|-+=.++ .|+++|+..+|....-
T Consensus 437 ~i--------------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 437 LI--------------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred Ee--------------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 11 122335589999999999999887665 7999999999986554
No 285
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=9.7e-07 Score=87.67 Aligned_cols=230 Identities=14% Similarity=0.173 Sum_probs=142.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcc--eEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEP--LISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~--~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
..+-+++++.||.||+=.+. .++.+ ...+..|.++|..++.-|+. ..|.||+.|+.+.-.|+.+.. |...++
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~-~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~--- 272 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEIL-ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFV--- 272 (559)
T ss_pred CCcCceeccccCceeeeeec-cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC-ccceee---
Confidence 34567788899999997764 23333 33455899999999999976 479999999999988876532 222111
Q ss_pred cCCCceEEeecCCc---cEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE------EEEe-----cc-chhHHHhhhcC
Q 011473 101 KSDTNLFEILKSKT---TVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKL------RRVY-----DE-SLEVAQDLQRS 164 (485)
Q Consensus 101 ~~~~~l~~~~~~~~---~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~------~~~~-----~~-~~~~i~~~~~~ 164 (485)
.-..+.. ...+++..|-.. .||+++.|..+|+||.+.-.. +..+ .+ ....|+++..+
T Consensus 273 -------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 273 -------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred -------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 0111222 468899999665 899999999999999874221 1222 11 11123444333
Q ss_pred CC-----------cccccc-ccccc-------chhhhhHh-hhccC-CCCCceEE-ECCCCCEEEEecCCC-eEEEEccc
Q 011473 165 DA-----------PLYRLE-AIDFG-------RRMAVEKE-IEKTE-TAPPSNAI-FDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 165 ~~-----------~~~~~~-~~~~g-------~~~~~~~~-i~~~~-~~~~~~i~-fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
.. .+|-+. ....| .+-...+. .+.+. ..++..+- |-|...|+++||+-| |-+|+-.+
T Consensus 346 h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 346 HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 21 112111 11111 00001111 22222 22345555 589999999999988 99999999
Q ss_pred CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 222 NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 222 g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+++++.+.+... -+-|...+ |--.+|||..-|.-|+||+...++
T Consensus 426 ~eii~~MegDr~-----VVNCLEpH-----------------------P~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 426 GEIIRFMEGDRH-----VVNCLEPH-----------------------PHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hHHHHHhhcccc-----eEeccCCC-----------------------CCCchhhccCCccceeeecCCccc
Confidence 999998877651 22343322 334457999999999999985433
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.44 E-value=9.5e-05 Score=84.60 Aligned_cols=228 Identities=16% Similarity=0.134 Sum_probs=126.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-----------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEcC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVH-----------------MGPVKVMRYNP-VFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-----------------~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~ 86 (485)
+.+.++....+.|+++|.. + ..+.++.+- -..-..|+|+| ++.++++.+.++.|++||.
T Consensus 636 n~LYVaDt~n~~Ir~id~~--~-~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~ 712 (1057)
T PLN02919 636 NLLYVADTENHALREIDFV--N-ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI 712 (1057)
T ss_pred CEEEEEeCCCceEEEEecC--C-CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence 4466776667889999985 2 335555320 11235799999 5667788888899999998
Q ss_pred CCCCCCCceeEEEEcCCCceEEee------cCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEIL------KSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~------~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
.++... .|. ......... ..-.....++|+|||+ .+++-+.++.|++||+.++.......+.. ..
T Consensus 713 ~~g~v~----~~~--G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~-~~- 784 (1057)
T PLN02919 713 SDGVTR----VFS--GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP-TF- 784 (1057)
T ss_pred CCCeEE----EEe--cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc-cc-
Confidence 764321 010 000000000 1113467899999998 44555678999999999876422111000 00
Q ss_pred hhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCc---c
Q 011473 160 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENN---D 235 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~---~ 235 (485)
+..++.+...+ |. .... .. .....++|+++|+..++-+..+ |++||..++.+....+..... .
T Consensus 785 -----~~~l~~fG~~d-G~--g~~~----~l-~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG 851 (1057)
T PLN02919 785 -----SDNLFKFGDHD-GV--GSEV----LL-QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG 851 (1057)
T ss_pred -----CcccccccCCC-Cc--hhhh----hc-cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence 00000110000 00 0000 01 1124889999999777766654 999999998876554322100 0
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011473 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
+.. -+.|+. | .++ . ..+|+.++++-..+++|++|+....+.
T Consensus 852 ~~~-~a~l~~-P--~GI---a-----------vd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 852 KAL-KAQLSE-P--AGL---A-----------LGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccc-ccccCC-c--eEE---E-----------EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 000 011110 0 001 0 126778999999999999998866543
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=2.4e-05 Score=89.46 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=105.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEec---------C------CCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKV---------H------MGPVKVMRYNPVFD-TVISADDKGIIEYWSPH 87 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~---------h------~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~ 87 (485)
++.+.++.+.++.|++||.. ++. +..+.+ + -.....|+|+|+++ ++++-+.++.|++||+.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~--~g~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNIS--DGV-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred CCeEEEEECCCCeEEEEECC--CCe-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 56788888888999999985 322 222221 1 12346799999998 55566677999999987
Q ss_pred CCCCCCceeEE-EEcCCCceEEeec--------CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHH
Q 011473 88 TLQFPESEVSF-RLKSDTNLFEILK--------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVA 158 (485)
Q Consensus 88 t~~~~~~~~~~-~~~~~~~l~~~~~--------~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i 158 (485)
++.... +.- .......+..+-. .-.....++++|+|..+++-+.++.|++||..++.+.........
T Consensus 771 tg~~~~--~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~-- 846 (1057)
T PLN02919 771 TGGSRL--LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA-- 846 (1057)
T ss_pred CCcEEE--EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc--
Confidence 643110 000 0000000111110 112356899999999999989999999999998877543311000
Q ss_pred HhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE
Q 011473 159 QDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
-+ ..|+. . ...-.....|+++++|+.+++-+... |++||+.+++..
T Consensus 847 ---------G~-----~dG~~------~-~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 847 ---------GF-----KDGKA------L-KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred ---------CC-----CCCcc------c-ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 00 00110 0 00011235899999999877777665 999999998763
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.37 E-value=6.7e-06 Score=80.15 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=96.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCCEEE---EEeCCCcEEEEcCCCCCCCCcee
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFDTVI---SADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~~l~---s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
++.+++++.+..++...+++..... .+++.....- ..-+++.|-.+..... .++....+.+|....+
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~------- 142 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG------- 142 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc-------
Confidence 4566677766666666677665211 2233333222 2234445544444333 3445556666654432
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cchhHHHhhhcCCCccccccccc
Q 011473 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD-ESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+...+.+|-+-++.++||||+++++++-.|.+|||-....--.+..|- +|...
T Consensus 143 --------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF------------------ 196 (390)
T KOG3914|consen 143 --------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF------------------ 196 (390)
T ss_pred --------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh------------------
Confidence 222366888999999999999999999999999997665433333331 12222
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
++.++.- +++.|++++-|+ +++||+.+|++++++.-.
T Consensus 197 ------------------VS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 197 ------------------VSTISLT-DNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred ------------------eeeeeec-cCceeeecCCCCcEEEEecccCCcccccchh
Confidence 2344444 455678887765 999999999999877543
No 289
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.36 E-value=8e-07 Score=84.29 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+|.+..+++.+.- .+-|=|.. +.+.++-+. --..|..+.|.-|...+ ..+..|+.|.+|++..-+ |.
T Consensus 17 Sp~g~yiAs~~~y-rlviRd~~--tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w~- 84 (447)
T KOG4497|consen 17 SPCGNYIASLSRY-RLVIRDSE--TLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------WY- 84 (447)
T ss_pred CCCCCeeeeeeee-EEEEeccc--hhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-------eE-
Confidence 6788899998644 66666664 444333222 23567889999887754 556789999999885421 21
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEE
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLR 148 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~ 148 (485)
-.+....+.+.+++|||||+.+..-+ -|-.|.||.+.|.++.
T Consensus 85 ------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 85 ------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred ------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 12556678899999999997665555 5999999999887763
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=4.5e-05 Score=75.89 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=107.6
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCC
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK 113 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg-~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (485)
|.+-|.+.. .+-.+ . -+|...|....+..+++-++.+..|| .+-++|.++++ +..+.+.-
T Consensus 341 GkaFi~~~~--~~~~i-q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------~kr~e~~l 401 (668)
T COG4946 341 GKAFIMRPW--DGYSI-Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------VKRIEKDL 401 (668)
T ss_pred CcEEEECCC--CCeeE-E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------EEEeeCCc
Confidence 566666653 22222 1 27889999999999999999999998 89999987643 33456666
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCC
Q 011473 114 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 193 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~ 193 (485)
+.|.++..+|||++++.+..-..|.+.|+.+|+. +.++ ++....
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~id-----------------------------------kS~~~l 445 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLID-----------------------------------KSEYGL 445 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEec-----------------------------------ccccce
Confidence 7899999999999999988888999999999986 2222 122233
Q ss_pred CceEEECCCCCEEEEecCC-----CeEEEEcccCeEEEeecc
Q 011473 194 PSNAIFDESSNFLIYATLL-----GIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~-----~i~v~d~~tg~~v~~~~~ 230 (485)
+...+|+|++++||++-.. .||++|+.++++..+-..
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 4678999999999998653 489999999998876543
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=4.1e-06 Score=80.12 Aligned_cols=177 Identities=11% Similarity=0.072 Sum_probs=122.3
Q ss_pred eeeecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 011473 3 LMIRLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIE 82 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~ 82 (485)
+-++++-.+.| .|.-. -.+.. ++.+.+..|-+-|+. ++ ..+.|. -++.|.++.|+..+.++..|-..|.|-
T Consensus 207 ~SlQi~~a~~C-awSln---i~gyh-fs~G~sqqv~L~nve--tg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~ 277 (425)
T KOG2695|consen 207 CSLQIPKAWSC-AWSLN---IMGYH-FSVGLSQQVLLTNVE--TG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIF 277 (425)
T ss_pred eeecCCcchhh-hhhhc---cceee-ecccccceeEEEEee--cc-cccccc-cchhHHHHHhcccCCeeEecccCCcEE
Confidence 34444444443 66422 12233 444456678888886 33 223443 667899999999999999999999999
Q ss_pred EEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE---EEEeccchhHH
Q 011473 83 YWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVA 158 (485)
Q Consensus 83 ~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~---~~~~~~~~~~i 158 (485)
..|++....-. +.+...+ -|.+.|+++..-. ++++|.+.+.+|+|++||.+.-|| +++|.+|....
T Consensus 278 ~iDLR~rnqG~---------~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 278 VIDLRCRNQGN---------GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred EEEeeecccCC---------CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 99987631111 1222223 3677788888766 788999999999999999998777 89998876442
Q ss_pred HhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 159 QDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
. ..-+-.++.-.+++++++|. .++|.+..|.++.++....
T Consensus 348 a----------------------------------~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 348 A----------------------------------YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred c----------------------------------ccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 2 01122355666778888887 7999999999999997765
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=6.1e-06 Score=77.84 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=91.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCC-----ccEEEEEEcCCC-CEE
Q 011473 55 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSK-----TTVSAIEVSPDG-KQF 128 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~i~~spdg-~~l 128 (485)
.|.-.|.++.|+.|.+.++|++ |-.|.+|.++- +.. .-.+..++.|. ..+++..|+|.- ..|
T Consensus 170 aH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i---~D~--------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSAD-DLRINLWNLEI---IDG--------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred cceeEeeeeeecCchheeeecc-ceeeeeccccc---cCC--------ceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 4777789999999999999976 66889997653 111 11122233333 457888999954 556
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEE
Q 011473 129 SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 208 (485)
Q Consensus 129 at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~ 208 (485)
.-.+..|.|++-|++...+-. .+.+ ..+..-.+. ..+.+ .+ ....++.+.|+++|+||++
T Consensus 238 mYSsSkG~Ikl~DlRq~alcd---n~~k-lfe~~~D~v---~~~ff---------~e----ivsSISD~kFs~ngryIls 297 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCD---NSKK-LFELTIDGV---DVDFF---------EE----IVSSISDFKFSDNGRYILS 297 (460)
T ss_pred EEecCCCcEEehhhhhhhhcc---Cchh-hhhhccCcc---cchhH---------HH----HhhhhcceEEcCCCcEEEE
Confidence 666788999999998543210 0000 000000000 00000 00 1123467889999999999
Q ss_pred ecCCCeEEEEccc-CeEEEeecccC
Q 011473 209 ATLLGIKIVNLHT-NKVSRILGKVE 232 (485)
Q Consensus 209 ~s~~~i~v~d~~t-g~~v~~~~~~~ 232 (485)
-....+++||..- ..+++++.-|.
T Consensus 298 RdyltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 298 RDYLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred eccceEEEEecccccCCceeechHH
Confidence 9999999999874 56888886665
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=6.1e-05 Score=79.04 Aligned_cols=228 Identities=17% Similarity=0.188 Sum_probs=148.3
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-----------CC-EEEEEeCCCcEEEEcCC
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-----------FD-TVISADDKGIIEYWSPH 87 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-----------~~-~l~s~s~dg~i~~Wd~~ 87 (485)
.+++.+.++.++ -..|-+-|.. +.+.+++++.|+..|+.|+|.|. .+ +||+++..|.|.+||..
T Consensus 22 Dw~~~GLiAygs--hslV~VVDs~--s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 22 DWSPSGLIAYGS--HSLVSVVDSR--SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV 97 (1062)
T ss_pred ccCccceEEEec--CceEEEEehh--hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence 456666665554 3578888987 78899999999999999999873 11 57888889999999986
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhc
Q 011473 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQR 163 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp---dg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~ 163 (485)
.+.. ...+..|..++..++|=| +. ..|+.-....++-+|+..||+.++.++-+...+.+...
T Consensus 98 ~~s~--------------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 98 LASV--------------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred hhhh--------------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 6332 223667777888888755 55 45666677889999999999999999877777766655
Q ss_pred CCCcccccccc------------------cccch----------hhhhHhhhccC----CCC-------CceEEECCCCC
Q 011473 164 SDAPLYRLEAI------------------DFGRR----------MAVEKEIEKTE----TAP-------PSNAIFDESSN 204 (485)
Q Consensus 164 ~~~~~~~~~~~------------------~~g~~----------~~~~~~i~~~~----~~~-------~~~i~fd~~g~ 204 (485)
.|-...|+--. .-|+. -..|++..... ..+ ....+|+|.=+
T Consensus 164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 55322221100 00110 01112111110 000 02457788877
Q ss_pred EEEEecC-CCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 011473 205 FLIYATL-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 283 (485)
Q Consensus 205 ~l~~~s~-~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~ 283 (485)
-++..+. .++-++|++-..++.++.-..+...|+.+--. +.--.+-+...|++
T Consensus 244 n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~--------------------------~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 244 NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD--------------------------PRRDALFCLHSNGR 297 (1062)
T ss_pred ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC--------------------------CCcceEEEEecCCe
Confidence 5555554 56999999988888777544433445544111 22234678999999
Q ss_pred EEEEecCC
Q 011473 284 IYLFSRRE 291 (485)
Q Consensus 284 i~~f~~~~ 291 (485)
+-+|-+++
T Consensus 298 ltirvrk~ 305 (1062)
T KOG1912|consen 298 LTIRVRKE 305 (1062)
T ss_pred EEEEEeec
Confidence 99998875
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.00061 Score=66.08 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCcceEEE-EeCCCCeEEEEEcCCCCCcc--eEEEecCCCC----------eEEEEEcCCCCEEEEEeCC-CcEEEEcCC
Q 011473 22 DVKAGLAI-SDRNSSFVHIYDARADSNEP--LISKKVHMGP----------VKVMRYNPVFDTVISADDK-GIIEYWSPH 87 (485)
Q Consensus 22 ~~~~~l~v-s~s~d~~I~iwd~~~~~~~~--~~~l~~h~~~----------V~~l~fspd~~~l~s~s~d-g~i~~Wd~~ 87 (485)
++++++++ +....+.|.++-++. .+.+ .-.+..|.++ +.+..|.|++++|++++.. -.|.++++.
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~-dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQA-DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEccc-CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence 44564444 445678999999863 2332 2222356555 9999999999999998732 367778877
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 011473 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT 144 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~t 144 (485)
.+++... ....+ +..+....|+|+|+|++..+.++ +++|-+|....
T Consensus 176 dg~L~~~----------~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 176 DGKLTPA----------DPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cCccccc----------ccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 6654332 11112 34455789999999999877775 99999999876
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.19 E-value=4.8e-06 Score=79.62 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=58.5
Q ss_pred eCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 011473 19 KQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 19 ~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~ 87 (485)
..+++.+.++.|++.|..|.+||+- +.....+.+.+|...|..+.+.+.-+.+.|++.||.|.+|+..
T Consensus 203 l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 203 LKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEcCCCcEEEeccccCceEEEecc-CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 3457788999999999999999996 2334467788999999999999999999999999999999765
No 296
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.14 E-value=3e-05 Score=74.31 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011473 46 SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 46 ~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
.-.++.++.+|...|.+++|.|....|.|+..|..+.+||+.-.+ ...+++.+|...|..+..-+--
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------------g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------------GTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------------ceeeeeccchhhhhhhhhhhhh
Confidence 346778888999999999999999999999999999999985422 2345678898899999988888
Q ss_pred CEEEEEeCCCcEEEEECCCCc
Q 011473 126 KQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 126 ~~lat~s~D~~I~iwd~~tg~ 146 (485)
+.+.+++.|+.|-+||+.-.+
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeeeccCCCeEEEEecccee
Confidence 999999999999999986543
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=4.6e-05 Score=78.24 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=84.7
Q ss_pred eeeecCCCCCeEEEEEeCCCCcceEEE--EeCCCCe----EEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 011473 3 LMIRLPFIPGAVEWVYKQGDVKAGLAI--SDRNSSF----VHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISA 75 (485)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~v--s~s~d~~----I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~ 75 (485)
+-++..+.|-++.|... .|...+.| +.+.+|. -.+|+.....-+.+.... .+.+.|.++++||+.+.++.|
T Consensus 200 ~yirTE~dPl~~~Fs~~--~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 200 SYIRTENDPLDVEFSLN--QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred EEEEecCCcEEEEccCC--CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEE
Confidence 34455667766665433 22333333 2223332 345666411111221111 578899999999999999999
Q ss_pred eCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 011473 76 DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 76 s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~ 147 (485)
..||.|.+||.... +..+....-.++.++|+|+|..|++|+.-|.+.+||+.-+.+
T Consensus 278 C~DgSiiLyD~~~~----------------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 278 CEDGSIILYDTTRG----------------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ecCCeEEEEEcCCC----------------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 99999999998542 222334445678999999999999999999999999876554
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=76.84 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=88.3
Q ss_pred ceEEEEeCCCCeEEEEEcCC---CCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 25 AGLAISDRNSSFVHIYDARA---DSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~---~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
..++..|...|.|-.+|++. +++.+.+.| -|.+.|+++.... +++.|++.+.+|.|++||.+--++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------- 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------- 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc---------
Confidence 34677777899999999973 234566666 6999999999887 788999999999999999875333
Q ss_pred cCCCceEEeecCCcc--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 101 KSDTNLFEILKSKTT--VSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~--v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
+..+..+.+|-.. -.-+-..+....+++++.|...|||.+++|.++.++.
T Consensus 334 --~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 334 --KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred --ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 3345557777321 1223355666778889999999999999999998873
No 299
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.12 E-value=0.0015 Score=65.83 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=97.3
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEE---Ee----------cCCCCeEEEEEcCCCCEEEEEeC-
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS---KK----------VHMGPVKVMRYNPVFDTVISADD- 77 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~---l~----------~h~~~V~~l~fspd~~~l~s~s~- 77 (485)
..-|++....+ ...++++...+++|.+|++.. .+.+... +. .-.....++.|+||+++++.++.
T Consensus 87 ~~p~~i~~~~~-g~~l~vany~~g~v~v~~l~~-~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 87 SSPCHIAVDPD-GRFLYVANYGGGSVSVFPLDD-DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SCEEEEEECTT-SSEEEEEETTTTEEEEEEECT-TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCcEEEEEecC-CCEEEEEEccCCeEEEEEccC-CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 34456655332 344555666799999999973 2333222 21 11345789999999998887763
Q ss_pred CCcEEEEcCCCCCCCCceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCcEE--EEe
Q 011473 78 KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR--TGKLR--RVY 151 (485)
Q Consensus 78 dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~--tg~~~--~~~ 151 (485)
...|.+++.......- +....+. ........++|+|||+++...+ .++.|.+|++. +|+.. .++
T Consensus 165 ~D~v~~~~~~~~~~~l----------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKL----------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TE----------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEEeCCCceE----------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 3467777654321000 0011111 2335578999999999886666 57889999988 55431 111
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEc--ccCeE
Q 011473 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNL--HTNKV 224 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~--~tg~~ 224 (485)
.. +. . + -.....-..|+++|||++|.++.. +.|-++++ .+|++
T Consensus 235 ~~----~~-------------~---~----------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 235 ST----LP-------------E---G----------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp ES----CE-------------T---T----------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred ee----cc-------------c---c----------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence 10 00 0 0 000012258899999999877654 45899988 34554
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00069 Score=69.94 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=66.4
Q ss_pred CCCCcce--EEEEeCC--CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE--cCCCCCCC
Q 011473 20 QGDVKAG--LAISDRN--SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYW--SPHTLQFP 92 (485)
Q Consensus 20 ~~~~~~~--l~vs~s~--d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~W--d~~t~~~~ 92 (485)
.++|++. ++.+... +..|.++|+. +++. +.+....+.+....|+|||+.++ +.+.++.-.+| |+.+++
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~--tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-- 268 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLY--TGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-- 268 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECC--CCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--
Confidence 3466654 3433332 4568888986 4432 33333455566788999998554 55555544444 665432
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEE
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-R--RIRVFWFRTGKLRR 149 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D-~--~I~iwd~~tg~~~~ 149 (485)
+..+..+........|||||+.|+-.+.. + .|.+.|+.+|+..+
T Consensus 269 -------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 269 -------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred -------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 22233333333455799999988877632 2 67888888777633
No 301
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.10 E-value=4.7e-05 Score=71.60 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=86.1
Q ss_pred EEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEE-EecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCC
Q 011473 15 EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLIS-KKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 15 ~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~-l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+|....++.++.++.+|++|+.+.-||++. .++.+.. -+-|...|.++.=+| ...++++|+.|..|++||.++...|
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~-p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRI-PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecC-CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 455555566778999999999999999983 2344443 557999999998887 4679999999999999999864433
Q ss_pred Cc-----eeEEEEc--------------------------CCC---ceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcE
Q 011473 93 ES-----EVSFRLK--------------------------SDT---NLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRI 137 (485)
Q Consensus 93 ~~-----~~~~~~~--------------------------~~~---~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I 137 (485)
-. .-+|+++ ... .+...+.|.+-+..-.|..-...|||++ .|+.+
T Consensus 247 l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~ 326 (339)
T KOG0280|consen 247 LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKI 326 (339)
T ss_pred cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccce
Confidence 11 1123331 111 2223344555555556644445678866 57775
Q ss_pred E-EEECCCCc
Q 011473 138 R-VFWFRTGK 146 (485)
Q Consensus 138 ~-iwd~~tg~ 146 (485)
+ +|-.-|+.
T Consensus 327 ~~~Wl~~t~~ 336 (339)
T KOG0280|consen 327 RQLWLHITGE 336 (339)
T ss_pred eeeeeeccCC
Confidence 5 77555543
No 302
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.6e-05 Score=76.68 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=79.8
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEcCCCCCCCCceeE
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~Wd~~t~~~~~~~~~ 97 (485)
++.....++-|-.=.++-|||++ +.++..+. .++=+++-|||.|++|+-|+-+ |.|.+||+.+.++...
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnlr---~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~--- 351 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNLR---GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK--- 351 (566)
T ss_pred CCCCEEEEEEecccceEEEEcCC---CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc---
Confidence 33344666677677789999995 67777663 4566788999999999998865 8999999988655433
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEEE
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS------PDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s------~D~~I~iwd~~tg~~~~~ 150 (485)
+... .-+-+.|+|||++|+|+. -|..++||+. +|+.+..
T Consensus 352 -----------~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 352 -----------FKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred -----------cccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh
Confidence 3222 235578999999999987 3789999996 6776543
No 303
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.09 E-value=0.00011 Score=70.61 Aligned_cols=176 Identities=11% Similarity=0.183 Sum_probs=105.7
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcc--eEEEec-----CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEP--LISKKV-----HMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~--~~~l~~-----h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
.++..++|+ +|=.|.+|.+.- ..+. +--++. -+.-|++..|||.. .+++-.|..|+|++-|++.-.+-..
T Consensus 174 sD~Et~lSA-DdLRINLWnlei-~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 174 SDKETFLSA-DDLRINLWNLEI-IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred CccceEeec-cceeeeeccccc-cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 455666676 688899999862 2222 122223 35678999999965 5777788899999999874222111
Q ss_pred -eeEEEEcCC-CceEEeecCCccEEEEEEcCCCCEEEEEeCC-CcEEEEEC-CCCcEEEEeccchhHHHhhhcCCCcccc
Q 011473 95 -EVSFRLKSD-TNLFEILKSKTTVSAIEVSPDGKQFSITSPD-RRIRVFWF-RTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 95 -~~~~~~~~~-~~l~~~~~~~~~v~~i~~spdg~~lat~s~D-~~I~iwd~-~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
.-.|....+ ....-|..--+.|..+.||++|+++++ .| -+|+|||+ ...+.+.++.-|...-..+. .+|.
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc----~lYE 325 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLC----SLYE 325 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHHHH----HHhh
Confidence 000111000 000012223356889999999999986 44 68999999 45666667644332211100 0110
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe
Q 011473 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK 223 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~ 223 (485)
- .....-..++|+-++.++++|+... .++++...|.
T Consensus 326 n-----------------D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 326 N-----------------DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred c-----------------cchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 0 0011124789999999999999876 7999866554
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.07 E-value=2.3e-05 Score=81.62 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=88.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcc-eEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCC---------
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEP-LISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFP--------- 92 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~-~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~--------- 92 (485)
.++-+|+.+.. ...||.+...+... ...+-||..+|+.+.|+|+. ..+++|+.|..+..||+++-..|
T Consensus 81 ~~~wiVsts~q-kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 81 KPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CceeEEecCcc-hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 45677777654 46689986333333 34456999999999999976 58999999999999999875554
Q ss_pred -CceeEEEE--------------------cCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 011473 93 -ESEVSFRL--------------------KSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 93 -~~~~~~~~--------------------~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg 145 (485)
...+.|++ +.++++..+++|...|+.++|..- -..+.+.+.|++|+.||....
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 12333433 234567778888888999998762 345678889999999997643
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00027 Score=72.79 Aligned_cols=95 Identities=12% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCC
Q 011473 112 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~ 191 (485)
.++.|.+++++|+..+|+.||.||.|.+||...+.-..+- ..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k--------------------------------------a~ 299 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK--------------------------------------AE 299 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee--------------------------------------ec
Confidence 4567999999999999999999999999998766432111 00
Q ss_pred CCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE-EeecccCCccceeeeeecc
Q 011473 192 APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS-RILGKVENNDRFLRIALYQ 244 (485)
Q Consensus 192 ~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v-~~~~~~~~~~r~~~~s~~~ 244 (485)
.....++|+|+|.++++|+..| +++||+.-+-+- +.+.+.-.+...+.++.|-
T Consensus 300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf 354 (545)
T PF11768_consen 300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYF 354 (545)
T ss_pred ccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhc
Confidence 1225889999999999999987 999999866543 3333333244555555543
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.00 E-value=0.00055 Score=63.77 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=96.0
Q ss_pred eCCCCeEEEEEcCCCCCcceEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceE-
Q 011473 31 DRNSSFVHIYDARADSNEPLISKKVHMGP--VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF- 107 (485)
Q Consensus 31 ~s~d~~I~iwd~~~~~~~~~~~l~~h~~~--V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~- 107 (485)
++.|.++++.++..+... +..|... +.++++++|++++++.+....|-.+.+..-. ...+.
T Consensus 134 ~sndht~k~~~~~~~s~~----~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s------------ey~~~~ 197 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNK----FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES------------EYIENI 197 (344)
T ss_pred ccCCcceeEEEEecCccc----ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc------------ceeeee
Confidence 346788888887522211 1234433 7899999999999999988888887543210 00111
Q ss_pred EeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhh
Q 011473 108 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 187 (485)
Q Consensus 108 ~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 187 (485)
........-.+.+||.....||++.+|+++.|||++........ +..-+
T Consensus 198 ~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-------------------------------~sstr 246 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE-------------------------------ISSTR 246 (344)
T ss_pred EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh-------------------------------hcccC
Confidence 12223344578899999999999999999999999864432111 00111
Q ss_pred ccCCCCCceEEECCCCC--EEEEecCCC-eEEEEcccCeEEEee
Q 011473 188 KTETAPPSNAIFDESSN--FLIYATLLG-IKIVNLHTNKVSRIL 228 (485)
Q Consensus 188 ~~~~~~~~~i~fd~~g~--~l~~~s~~~-i~v~d~~tg~~v~~~ 228 (485)
.+....+..+.|++-|- +|.+.-..+ +++.|+.+++-++.+
T Consensus 247 p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 12333455778887665 444444445 899999988755444
No 307
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00027 Score=73.68 Aligned_cols=153 Identities=16% Similarity=0.258 Sum_probs=104.8
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCC-------------CcceEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADS-------------NEPLISKKVHMGPVKVMRYNPVFDTVISADDK 78 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~-------------~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d 78 (485)
.|++|-.. +-+++.|+.||.+++-.+...+ ...-++|+||+..|.-+.|+...+.|-|.+.+
T Consensus 18 ~c~~WNke-----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 18 HCAEWNKE-----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred EEEEEccc-----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 35556433 3467777789999998764211 12235788999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCceeEEEEcCCCceEEe--ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchh
Q 011473 79 GIIEYWSPHTLQFPESEVSFRLKSDTNLFEI--LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLE 156 (485)
Q Consensus 79 g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~--~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~ 156 (485)
|.|.+|-+-.+ ....++ ...++.|.+++|+.||+.++..-.||.|.|=.+.-.+. +
T Consensus 93 GlIiVWmlykg--------------sW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---w----- 150 (1189)
T KOG2041|consen 93 GLIIVWMLYKG--------------SWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---W----- 150 (1189)
T ss_pred ceEEEEeeecc--------------cHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---c-----
Confidence 99999965332 111111 24567899999999999999999999987766543222 1
Q ss_pred HHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011473 157 VAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
| ++++ ......+.|++|.+.++.+-..| ++++|-+
T Consensus 151 --------------------g------KeLk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 151 --------------------G------KELK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred --------------------c------hhcc---hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 1 1111 11123567888888777776665 7777754
No 308
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.99 E-value=0.0025 Score=63.67 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=59.3
Q ss_pred ceeeecCCCCCeEEEEEeCCCCcceEEEEeC---------CCCeEEEEEcCCCCCcceEEEecC-------CCCeEEEEE
Q 011473 2 MLMIRLPFIPGAVEWVYKQGDVKAGLAISDR---------NSSFVHIYDARADSNEPLISKKVH-------MGPVKVMRY 65 (485)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~vs~s---------~d~~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~f 65 (485)
+.++...+.|... + +.+ ...+.++.+ .+..|.+||+. +.+.++++..- -..-..+++
T Consensus 40 ~g~i~~G~~P~~~--~--spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 40 LGMTDGGFLPNPV--V--ASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred EEEEEccCCCcee--E--CCC-CCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEE
Confidence 3466667777642 2 222 344555666 78899999998 88888888631 122347889
Q ss_pred cCCCCEEEEEe-C-CCcEEEEcCCCCCCCC
Q 011473 66 NPVFDTVISAD-D-KGIIEYWSPHTLQFPE 93 (485)
Q Consensus 66 spd~~~l~s~s-~-dg~i~~Wd~~t~~~~~ 93 (485)
+|||++|..+. . +..+-+.|+++.++..
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 99999888665 3 6899999999877653
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=3.3e-05 Score=78.00 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=70.9
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC-CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEE
Q 011473 50 LISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL-QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF 128 (485)
Q Consensus 50 ~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~-~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~l 128 (485)
++.+.||+..|..++--.+.+-++|+|.|+++++|.++.- .-. ++..+-++++.|+.+|.++.|-.|-+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~--------~tsaCQfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI--------GTSACQFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc--------ccceeeeEhhhccCcccceeeeecccee
Confidence 5567799999999887777888999999999999976431 111 1244566688999999999999998887
Q ss_pred EEEeCCCcEEEEECCCCcEE
Q 011473 129 SITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 129 at~s~D~~I~iwd~~tg~~~ 148 (485)
| |.|+.|++||.--|+.+
T Consensus 800 ~--ScD~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 800 A--SCDGGIHLWDPFIGRLL 817 (1034)
T ss_pred e--eccCcceeecccccchh
Confidence 6 56899999998777654
No 310
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.91 E-value=4.9e-05 Score=86.20 Aligned_cols=198 Identities=10% Similarity=0.107 Sum_probs=127.3
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEE
Q 011473 53 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 53 l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~ 131 (485)
++.|-..|.++.=||...+.+|++.||.+++|.-.. +..+..++ ...+.|+.+.|+..|..+..+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--------------~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~ 2269 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--------------GQQVVCFRTAGNSRVTRSRFNHQGNKFGIV 2269 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccC--------------CCeEEEeeccCcchhhhhhhcccCCceeee
Confidence 345566788888899999999999999999996543 22333332 223779999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC-----------CcccccccccccchhhhhHhhhccCCCCCceEEEC
Q 011473 132 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD-----------APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 200 (485)
Q Consensus 132 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd 200 (485)
-.||.+.+|.+. .+..-...-|....+...+-. ..-..+++....... .-+...+....+.++|-
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~---s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMN---SLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccc---ceeeeecCCCceEEEEc
Confidence 999999999876 333333333333222222111 000111111000000 01113344455789999
Q ss_pred CCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeee
Q 011473 201 ESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 279 (485)
Q Consensus 201 ~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 279 (485)
|.-+.|++|+.+| +++||+...++.+++..-. ..-.|.+|+
T Consensus 2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~~~--------------------------------------~~~~f~~~s 2387 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQALD--------------------------------------TREYFVTGS 2387 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHHHHHHHHhhhhh--------------------------------------hhheeeccC
Confidence 9999999999998 9999999888766553311 122478999
Q ss_pred cCceEEEEecCCCCCCCc---cCCCccccC
Q 011473 280 KRHRIYLFSRREPEEPED---ATKGRDIFN 306 (485)
Q Consensus 280 ~d~~i~~f~~~~~~~~~~---~~~~rd~~n 306 (485)
..+.|+||.-.++....- ++.+-++|.
T Consensus 2388 s~g~ikIw~~s~~~ll~~~p~e~ak~gfFr 2417 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEFGLLHTFPSEHAKQGFFR 2417 (2439)
T ss_pred cccceEEEEccccchhhcCchhhcccchhh
Confidence 999999999887754432 334445544
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.89 E-value=0.0013 Score=63.80 Aligned_cols=191 Identities=12% Similarity=0.123 Sum_probs=106.9
Q ss_pred ceEEEEeCCCC-eEEEEEcCCCCCcceEEEecCCCCeE--EEEEcCCCCEEEEEeC-----CCcEEEEcCC-CCCCCCce
Q 011473 25 AGLAISDRNSS-FVHIYDARADSNEPLISKKVHMGPVK--VMRYNPVFDTVISADD-----KGIIEYWSPH-TLQFPESE 95 (485)
Q Consensus 25 ~~l~vs~s~d~-~I~iwd~~~~~~~~~~~l~~h~~~V~--~l~fspd~~~l~s~s~-----dg~i~~Wd~~-t~~~~~~~ 95 (485)
...++-+-.-| -..+||.. +++..+.+....+.-. .-.|||||++|.+.-. .|.|-+||.. +++
T Consensus 17 ~~avafaRRPG~~~~v~D~~--~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~----- 89 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCR--TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR----- 89 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcC--CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE-----
Confidence 34444444444 36678886 5666655542221111 3579999999988644 4899999987 432
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCcEEEE--ecc--
Q 011473 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS------------------PDRRIRVFWFRTGKLRRV--YDE-- 153 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s------------------~D~~I~iwd~~tg~~~~~--~~~-- 153 (485)
.+-++..|.-....+.+.|||+.|+++- .+..+-.-|..+|+++.. +..
T Consensus 90 ---------ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 90 ---------RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred ---------EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 2333666665567788999998777763 223455567778887665 322
Q ss_pred chhHHH------------hhhcCCCcccccc---cccccchh---hhhHhhhccCCCCCceEEECCCCCEEEEecCCC--
Q 011473 154 SLEVAQ------------DLQRSDAPLYRLE---AIDFGRRM---AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-- 213 (485)
Q Consensus 154 ~~~~i~------------~~~~~~~~~~~~~---~~~~g~~~---~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-- 213 (485)
+.-++. .+|+....-.... ....|..+ ....+....-..=.-||+++++|.+++..|..+
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 111221 1122111000000 00001100 000011111112235999999999999988864
Q ss_pred eEEEEcccCeEEEeeccc
Q 011473 214 IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 214 i~v~d~~tg~~v~~~~~~ 231 (485)
+.+||..+|+++....-.
T Consensus 241 ~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLP 258 (305)
T ss_pred EEEEECCCCCEeeccccC
Confidence 899999999988665433
No 312
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.87 E-value=0.0091 Score=59.72 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
++|.+.|.. +.+.+.++..-..+- .+ +|||++.|..|. .+..|.+||+++.+.... +..+.
T Consensus 27 ~~v~ViD~~--~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-----i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE--AGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-----IELPE 97 (352)
T ss_pred ceEEEEECC--CCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----EccCC
Confidence 889999997 778888887433333 24 999999776554 478999999998654432 00000
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCcEEEEec
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITS-P-DRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s-~-D~~I~iwd~~tg~~~~~~~ 152 (485)
.-. +. .......+++||||++|.... . +..|-+.|+.+++.+..++
T Consensus 98 ~p~-~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 98 GPR-FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred Cch-hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 000 00 112235789999999998776 3 7899999999999998874
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0049 Score=63.65 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCE-EEEEeCC---CcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDT-VISADDK---GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~-l~s~s~d---g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
.|.+-|.. +...+.+.... .+...+|+|||+. ++-.+.+ ..|.++|+.+++. ..+..
T Consensus 170 ~l~~~d~d---g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------~~lt~ 230 (419)
T PRK04043 170 NIVLADYT---LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------EKIAS 230 (419)
T ss_pred eEEEECCC---CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------EEEec
Confidence 45554543 33344444333 7889999999984 5544433 3455568766431 11222
Q ss_pred CCccEEEEEEcCCCCEEEEEe-C--CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 112 SKTTVSAIEVSPDGKQFSITS-P--DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s-~--D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
........+|||||+.++... . +..|.++|+.+++..+....
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~----------------------------------- 275 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNY----------------------------------- 275 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccC-----------------------------------
Confidence 344456678999998876543 2 35688888887765332111
Q ss_pred cCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEe
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRI 227 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~ 227 (485)
........|+|||+.|+..+.. .|.++|+.+|+.-+.
T Consensus 276 --~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 276 --PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred --CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 0001244799999999988864 377778887776443
No 314
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.79 E-value=0.0057 Score=61.58 Aligned_cols=153 Identities=14% Similarity=0.235 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCCcc--eEEEecCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEcCCC--CCCCCceeEEEEcCCCce
Q 011473 35 SFVHIYDARADSNEP--LISKKVHMGPVKVMRYNPVFDTVISADD----KGIIEYWSPHT--LQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~--~~~l~~h~~~V~~l~fspd~~~l~s~s~----dg~i~~Wd~~t--~~~~~~~~~~~~~~~~~l 106 (485)
+.|.+|++...+++. +..+. -......|+++|++++|.+++. ++.|..|++.. +++ +.+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L------------~~~ 79 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL------------TLL 79 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE------------EEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee------------EEe
Confidence 789999984334432 23322 3344567899999999988876 46777764432 111 112
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhH
Q 011473 107 FEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 184 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (485)
............++++|+|++|+++. .++.|.++++.. |++...... +..... |..
T Consensus 80 ~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~---------------~~~~g~--g~~----- 137 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT---------------VRHEGS--GPN----- 137 (345)
T ss_dssp EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE---------------EESEEE--ESS-----
T ss_pred eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee---------------cccCCC--CCc-----
Confidence 22332334567899999999999988 489999999987 555433210 000000 000
Q ss_pred hhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCe
Q 011473 185 EIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNK 223 (485)
Q Consensus 185 ~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~ 223 (485)
-.........++.|+|+|++|+++.. +.|.++++....
T Consensus 138 -~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 138 -PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp -TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred -ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 00112223358999999999988755 568998886544
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.79 E-value=8.7e-05 Score=68.72 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=61.3
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCc
Q 011473 59 PVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRR 136 (485)
Q Consensus 59 ~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~ 136 (485)
.|++++-+|..+ +++.|+.||.+-+||.+....|.. .++.|++.++.+-|+| ++..|.+++.||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------------~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------------HHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 499999999655 667778999999999987544433 2778999999999999 7889999999999
Q ss_pred EEEEECCC
Q 011473 137 IRVFWFRT 144 (485)
Q Consensus 137 I~iwd~~t 144 (485)
+.-||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999765
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.77 E-value=0.019 Score=54.42 Aligned_cols=209 Identities=11% Similarity=0.158 Sum_probs=115.4
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM---GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~---~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+++++++.- .|..|.|=..+.+-...+.+-.-.+ -.-.-++||||+.+||.+...|+|+++|+..
T Consensus 7 ~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g----------- 74 (282)
T PF15492_consen 7 SDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG----------- 74 (282)
T ss_pred CCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-----------
Confidence 466666655 5777887666532233333333222 2356899999999999999999999999853
Q ss_pred EcCCCceEEeecC-------CccEEEEEEcCC------CCEEEEEeCCCcEEEEECCCC--c---EEEEeccchhHHHhh
Q 011473 100 LKSDTNLFEILKS-------KTTVSAIEVSPD------GKQFSITSPDRRIRVFWFRTG--K---LRRVYDESLEVAQDL 161 (485)
Q Consensus 100 ~~~~~~l~~~~~~-------~~~v~~i~~spd------g~~lat~s~D~~I~iwd~~tg--~---~~~~~~~~~~~i~~~ 161 (485)
..++.+... ...|..+.|-+- ...|..-..+|.++=|-+..| + ..+++
T Consensus 75 ----~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf---------- 140 (282)
T PF15492_consen 75 ----SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF---------- 140 (282)
T ss_pred ----ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE----------
Confidence 222222221 133444555332 123444455555555543221 1 11111
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC------------CCeEEEEcccCeEE----
Q 011473 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL------------LGIKIVNLHTNKVS---- 225 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~------------~~i~v~d~~tg~~v---- 225 (485)
.+..+....+.+++|+|.-++|++|+. -|+..|-+-.+..-
T Consensus 141 -----------------------sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 141 -----------------------SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred -----------------------EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 011122334578999999998888753 15777776655332
Q ss_pred EeecccC-------CccceeeeeeccCCc-cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011473 226 RILGKVE-------NNDRFLRIALYQGDR-SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 226 ~~~~~~~-------~~~r~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
...+.+- .-.|.+.+.+|..+. ...++..+.+ .||+.++|+-+-+++|.||.-..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----------SPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----------SPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccCccccccccccceeeccceeeeeccccCCCceEEEEE-----------CCCCCEEEEEEcCCeEEEEecCc
Confidence 2221111 011223333443211 1223333322 39999999999999999997654
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00097 Score=70.70 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=100.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-----FDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-----~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
+-.+..++|+|+||+|.|-.+- +.+..+++.- ..++.+++++|| .+++++|+..| +-+..-.=..
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~--~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg------ 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLF--TDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG------ 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeecc--CCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc------
Confidence 4568899999999999998875 5555555543 468999999998 45899999888 5453211000
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
...-..+....++|.+|.| .|+++|=++.+| |+|||+.+++.+..+.-+...+.
T Consensus 150 ------nk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R----------------- 203 (846)
T KOG2066|consen 150 ------NKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----------------- 203 (846)
T ss_pred ------CccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC-----------------
Confidence 0111135556788999999 588888877665 99999999988766632111000
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcc
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 220 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~ 220 (485)
.+ .--..+.|.++ ..|+.|=.+.|+|..+.
T Consensus 204 ------------~e-~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 204 ------------PE-LFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred ------------cc-cCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 00 01146788754 55677777788888887
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00071 Score=71.69 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=98.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
...++-|.-+|.|++++.+ +.+ .+...|+.. .-+|++++|||.||.|.+--+.+.+..
T Consensus 49 ~~~~~~GtH~g~v~~~~~~---~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~------------ 106 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ---GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI------------ 106 (846)
T ss_pred cceeeeccccceEEEEecC---Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc------------
Confidence 3456667788999999985 344 444456554 678999999999999998755442211
Q ss_pred ceEEeecCCccEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 105 NLFEILKSKTTVSAIEVSPD-----GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spd-----g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
..+. -+.++.+++++|| .++|++||.-| +.++.-.= + |++
T Consensus 107 ~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w---l----------------------------gnk 151 (846)
T KOG2066|consen 107 TQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW---L----------------------------GNK 151 (846)
T ss_pred eeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhh---h----------------------------cCc
Confidence 1112 2356899999998 67899999877 66663210 0 000
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccC
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~ 232 (485)
..+ .......++.++.|- |++||-+++.||+++|+.+++.+..+....
T Consensus 152 ~~v---~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 152 DSV---VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred cce---eeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCC
Confidence 000 011223345688884 889999999999999999999887776544
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.67 E-value=0.0038 Score=59.53 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=91.7
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--c-CCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEcCCCCCC
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKK--V-HMGPVKVMRYNPVFDTVISADDK--------GIIEYWSPHTLQF 91 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~-h~~~V~~l~fspd~~~l~s~s~d--------g~i~~Wd~~t~~~ 91 (485)
+++.++++.. +.+.++|...+.-+.+.... . .....+.+++.|+|++.++.+.. |.|..++.. +
T Consensus 50 ~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-- 124 (246)
T PF08450_consen 50 PDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-- 124 (246)
T ss_dssp TTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--
T ss_pred cCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--
Confidence 3577777763 45677798622223333332 2 34577899999999988887654 334444443 1
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC-c-EE--EEeccchhHHHhhhcCCC
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS-ITSPDRRIRVFWFRTG-K-LR--RVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la-t~s~D~~I~iwd~~tg-~-~~--~~~~~~~~~i~~~~~~~~ 166 (485)
.+..+...-...+.|+|+|||+.|. +-+..+.|..||+... . .. +.+-
T Consensus 125 -------------~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~-------------- 177 (246)
T PF08450_consen 125 -------------KVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI-------------- 177 (246)
T ss_dssp -------------EEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--------------
T ss_pred -------------eEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE--------------
Confidence 1122222334578999999998765 5567788999988532 2 21 1110
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeeccc
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~ 231 (485)
++... ....-.+++|.+|++.++.-. ..|.++|.. |++++.+.-.
T Consensus 178 ---~~~~~----------------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 178 ---DFPGG----------------PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp ---E-SSS----------------SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred ---EcCCC----------------CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 00000 001137899999997665543 459999988 9988888655
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00051 Score=69.85 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC-----
Q 011473 60 VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----- 134 (485)
Q Consensus 60 V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D----- 134 (485)
=+.+.|||.|.+|+|-..-| |.+|--.++...+ .|. | ..|.-+.|||..+||+|.|..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~--------------RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ--------------RFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVE 275 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHH--------------hcc-C-CCceeeecCCccceEEEecCCccccC
Confidence 36799999999999998765 6789554432111 121 3 237789999999999998832
Q ss_pred ------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEE
Q 011473 135 ------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 208 (485)
Q Consensus 135 ------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~ 208 (485)
..++|||+.||.+.+.+.-- +.....+.-..||.|++|+|-
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~---------------------------------~~~~~~WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVI---------------------------------KSPYLKWPIFRWSHDDKYFAR 322 (698)
T ss_pred cccCCCceEEEEEccccchhcceecc---------------------------------CCCccccceEEeccCCceeEE
Confidence 57999999999998877320 011122345679999999999
Q ss_pred ecCCCeEEEEcccCeE
Q 011473 209 ATLLGIKIVNLHTNKV 224 (485)
Q Consensus 209 ~s~~~i~v~d~~tg~~ 224 (485)
-+.++|.|++...-.+
T Consensus 323 m~~~sisIyEtpsf~l 338 (698)
T KOG2314|consen 323 MTGNSISIYETPSFML 338 (698)
T ss_pred eccceEEEEecCceee
Confidence 9999999998766433
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.64 E-value=0.0058 Score=57.54 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=70.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE-cCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL-KSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~-~~~ 103 (485)
+.++++ +.++.+..||.. +++.+.++.. ..++.... ..++..++.++.++.+..+|..+++. .|.. ...
T Consensus 37 ~~v~~~-~~~~~l~~~d~~--tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-----~W~~~~~~ 106 (238)
T PF13360_consen 37 GRVYVA-SGDGNLYALDAK--TGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-----LWSIYLTS 106 (238)
T ss_dssp TEEEEE-ETTSEEEEEETT--TSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-----EEEEEE-S
T ss_pred CEEEEE-cCCCEEEEEECC--CCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-----eeeecccc
Confidence 344444 578999999987 7888877764 22211111 23455566666788999999888653 3331 111
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.+ .. ......+...++..++.+..++.|..+|+++|+.+..+..
T Consensus 107 ~~-----~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 107 SP-----PA-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SC-----TC-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred cc-----cc-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 00 00 0112222333488888889999999999999999888743
No 322
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.64 E-value=0.0022 Score=59.87 Aligned_cols=123 Identities=11% Similarity=-0.057 Sum_probs=87.6
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLI-SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~-~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+-++++.++++-++...|-.|.+..+....+. .+..-+..=.+..|+.....+|.+..||++.+||++....|..
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---- 240 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---- 240 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----
Confidence 44778889998888899999998733333344 2233444557889999999999999999999999987554432
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGK--QFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~--~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
+....-..|++.+..+.|||-|. +|...-.-+.+.|-|+++++-.+.+
T Consensus 241 -----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 241 -----EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred -----hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 11111234889999999998664 3333334578999999998865544
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00018 Score=45.40 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=34.6
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEc
Q 011473 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS 85 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd 85 (485)
+++..+..|...|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677888999999999999999999999999999996
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.59 E-value=0.044 Score=52.14 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=105.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN-PVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fs-pd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
++.+.++.-..+.|+.||.. ++. ...+.... ...+++. +++.+ +.+..++. .++|..+++..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~--~~~-~~~~~~~~--~~G~~~~~~~g~l-~v~~~~~~-~~~d~~~g~~~---------- 73 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPD--TGE-VEVIDLPG--PNGMAFDRPDGRL-YVADSGGI-AVVDPDTGKVT---------- 73 (246)
T ss_dssp TTEEEEEETTTTEEEEEETT--TTE-EEEEESSS--EEEEEEECTTSEE-EEEETTCE-EEEETTTTEEE----------
T ss_pred CCEEEEEEcCCCEEEEEECC--CCe-EEEEecCC--CceEEEEccCCEE-EEEEcCce-EEEecCCCcEE----------
Confidence 67788888788999999986 332 33333222 6777887 66554 44555444 44587764321
Q ss_pred CCceEEee--c-CCccEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 103 DTNLFEIL--K-SKTTVSAIEVSPDGKQFSITSPD--------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 103 ~~~l~~~~--~-~~~~v~~i~~spdg~~lat~s~D--------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
.+.... . .....+.++++|+|+..++-... +.|..++.. ++.....+.
T Consensus 74 --~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~------------------ 132 (246)
T PF08450_consen 74 --VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG------------------ 132 (246)
T ss_dssp --EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE------------------
T ss_pred --EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC------------------
Confidence 122221 1 33568999999999988887644 457777766 554333211
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CC-eEEEEccc--CeEE--EeecccCCccceeeeeeccC
Q 011473 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LG-IKIVNLHT--NKVS--RILGKVENNDRFLRIALYQG 245 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~t--g~~v--~~~~~~~~~~r~~~~s~~~~ 245 (485)
....+.|+|+|+|+.|.++.. .+ |..+++.. +++. +++ .. +.+
T Consensus 133 -------------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~---------~~---~~~ 181 (246)
T PF08450_consen 133 -------------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF---------ID---FPG 181 (246)
T ss_dssp -------------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE---------EE----SS
T ss_pred -------------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE---------EE---cCC
Confidence 011258999999998765543 33 77777653 2121 111 00 000
Q ss_pred CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011473 246 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.. ...--+.+ ..++.+.++....++|++|+++
T Consensus 182 ~~--g~pDG~~v-----------D~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 182 GP--GYPDGLAV-----------DSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SS--CEEEEEEE-----------BTTS-EEEEEETTTEEEEEETT
T ss_pred CC--cCCCcceE-----------cCCCCEEEEEcCCCEEEEECCC
Confidence 00 00001111 2678889999999999999876
No 325
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.59 E-value=0.0045 Score=69.96 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=105.4
Q ss_pred cceEEEEeCCCCeEEEE----EcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-----
Q 011473 24 KAGLAISDRNSSFVHIY----DARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES----- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iw----d~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~----- 94 (485)
....++. .+|.|.+. |.. . ..+.....-...|.+++||||.++|+-+..++++.+-. .+++....
T Consensus 88 ~~l~~~~--~~Gdi~~~~~~~~~~--~-~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~ 161 (928)
T PF04762_consen 88 ESLCIAL--ASGDIILVREDPDPD--E-DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDS 161 (928)
T ss_pred CcEEEEE--CCceEEEEEccCCCC--C-ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCc
Confidence 3444444 56778888 443 1 12222223356899999999999999999888887651 11111100
Q ss_pred ---------eeE-------EEEcCCCc----eE----------EeecCCccEEEEEEcCCCCEEEEEeC----C--CcEE
Q 011473 95 ---------EVS-------FRLKSDTN----LF----------EILKSKTTVSAIEVSPDGKQFSITSP----D--RRIR 138 (485)
Q Consensus 95 ---------~~~-------~~~~~~~~----l~----------~~~~~~~~v~~i~~spdg~~lat~s~----D--~~I~ 138 (485)
.+. |+-+.++. +. .+. ....-..|+|--||++||+.+- . +.||
T Consensus 162 ~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iR 240 (928)
T PF04762_consen 162 DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIR 240 (928)
T ss_pred cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEE
Confidence 111 22111111 00 011 2234567999999999999884 2 6899
Q ss_pred EEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh---hhh--------Hhhhc-cCCCCCceEEECCCCCEE
Q 011473 139 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM---AVE--------KEIEK-TETAPPSNAIFDESSNFL 206 (485)
Q Consensus 139 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~---~~~--------~~i~~-~~~~~~~~i~fd~~g~~l 206 (485)
||+-+ |++..+-+.-...-..++|.|..-+-........+. -.| ..++. .....+..+.|++++..|
T Consensus 241 Vy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 241 VYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred EECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEE
Confidence 99854 776544432112223344544321111100000000 001 12222 334456899999999999
Q ss_pred EEecCCCeEEEEcccC
Q 011473 207 IYATLLGIKIVNLHTN 222 (485)
Q Consensus 207 ~~~s~~~i~v~d~~tg 222 (485)
+.-..+.|++|-....
T Consensus 320 Av~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 320 AVWLEDRVQLWTRSNY 335 (928)
T ss_pred EEEecCCceEEEeeCC
Confidence 9988888999987654
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.56 E-value=0.0092 Score=56.46 Aligned_cols=194 Identities=9% Similarity=0.122 Sum_probs=108.3
Q ss_pred EEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec-------CCCCeEEEEEcCCC------CEEEEEeCCCcE
Q 011473 15 EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV-------HMGPVKVMRYNPVF------DTVISADDKGII 81 (485)
Q Consensus 15 ~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-------h~~~V~~l~fspd~------~~l~s~s~dg~i 81 (485)
+|-...++|++.++|-+...|+|++||+. +..+..+.. -..+|..|.|.+.. ..|+....+|.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~---g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM---GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc---cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 45555668999999999999999999995 344555542 13566666675432 134455556665
Q ss_pred EEEcC--CCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCcE
Q 011473 82 EYWSP--HTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSPDR-----------RIRVFWFRTGKL 147 (485)
Q Consensus 82 ~~Wd~--~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~-----------~I~iwd~~tg~~ 147 (485)
+=+-+ .+.+--+ ....+.|.. +...|.++.++|.-+.|+.||... -+.-|.+-++..
T Consensus 122 ~Sy~vs~gt~q~y~---------e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQ---------ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eeEEEEcccCCcce---------eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence 54422 1111000 011122322 356799999999988888777321 234444433332
Q ss_pred EE----EeccchhHHHhhhcCCCcccccccc-cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011473 148 RR----VYDESLEVAQDLQRSDAPLYRLEAI-DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 148 ~~----~~~~~~~~i~~~~~~~~~~~~~~~~-~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
.. .+++.+.... ....++++... -+. .+......+..|+.||||++|++....| |-+|++..
T Consensus 193 yyk~v~~~~~~~~~~~----~~~~~~~~~~~~~fs--------~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 193 YYKQVTSSEDDITASS----KRRGLLRIPSFKFFS--------RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cEEEccccCccccccc----cccceeeccceeeee--------ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11 1111111000 00011111110 000 0122344567899999999999999887 99999998
Q ss_pred CeEEEeecccC
Q 011473 222 NKVSRILGKVE 232 (485)
Q Consensus 222 g~~v~~~~~~~ 232 (485)
-++.+...-+|
T Consensus 261 L~~~~~W~~~e 271 (282)
T PF15492_consen 261 LRLQRSWKQDE 271 (282)
T ss_pred chhhcccchhh
Confidence 88777665554
No 327
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0016 Score=66.39 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=102.4
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEcCCC
Q 011473 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-----------GIIEYWSPHT 88 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d-----------g~i~~Wd~~t 88 (485)
.+||.+.+++|-..- -|.+|--. +...++.+ .|. .|..+.|||..++|+|-|.. ..+.|||+.|
T Consensus 217 ~wSP~GTYL~t~Hk~-GI~lWGG~--~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQ-GIALWGGE--SFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred EecCCceEEEEEecc-ceeeecCc--cHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 347899999998654 49999765 45556666 454 68999999999999997632 5788999999
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc
Q 011473 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~ 168 (485)
|.+.+. |. .++.....-.-..||.|++++|.-.. ..|.||+..+-.+ ++..
T Consensus 292 G~lkrs---F~--------~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---ld~K-------------- 342 (698)
T KOG2314|consen 292 GLLKRS---FP--------VIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---LDKK-------------- 342 (698)
T ss_pred cchhcc---ee--------ccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---eccc--------------
Confidence 776554 11 01111122234679999999998776 4689998765322 2210
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC------CeEEEEcccCeEEEee
Q 011473 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL------GIKIVNLHTNKVSRIL 228 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~------~i~v~d~~tg~~v~~~ 228 (485)
.++ ...+....|+|.++.|||=+.. .+-+..+.+++.+|+-
T Consensus 343 ----------------slk---i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 343 ----------------SLK---ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred ----------------ccC---CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence 000 0112356789999999986531 3567777777766654
No 328
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.54 E-value=0.00024 Score=65.91 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=54.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t 88 (485)
.+.+++.|++||.+-+||++. -..+...|+.|+++++-+-|+| +++.|.+++.||.+..||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn-~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARN-VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEccc-ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 456777888999999999983 2445666789999999999999 567999999999999999874
No 329
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.0046 Score=60.15 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCcc-eEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEE--cCCCCCCCCceeEEEEcCCCceE
Q 011473 34 SSFVHIYDARADSNEP-LISKKVHMGPVKVMRYNPVFDTVISADDK---GIIEYW--SPHTLQFPESEVSFRLKSDTNLF 107 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~-~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~i~~W--d~~t~~~~~~~~~~~~~~~~~l~ 107 (485)
++-|++|++...+++. +-.+-.+.+.++-|+|+|+.+.|.++-.+ |.|.-+ |.+++++.. +.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~------------ln 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF------------LN 82 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE------------ee
Confidence 6779999986333322 11223677888999999999988887654 556544 444333211 00
Q ss_pred EeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHh
Q 011473 108 EILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 185 (485)
Q Consensus 108 ~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~ 185 (485)
.......+...++++++|+++.++.. -+.|.++-++. |.+....+. +.....|.+
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-----------------~~h~g~~p~------ 139 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-----------------VKHTGSGPH------ 139 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee-----------------eecCCCCCC------
Confidence 01111233488999999999999885 67899998865 554322210 000111111
Q ss_pred hhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEE
Q 011473 186 IEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVS 225 (485)
Q Consensus 186 i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v 225 (485)
.+..........|+|+|++|++... |.|.++++..|.+.
T Consensus 140 -~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~ 180 (346)
T COG2706 140 -ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT 180 (346)
T ss_pred -ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence 1122233467889999999999976 56999999877764
No 330
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.44 E-value=0.00035 Score=44.04 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=32.5
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.+..+..|...+.+++|+|++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445677888999999999999999999999999996
No 331
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.38 E-value=0.055 Score=61.33 Aligned_cols=239 Identities=10% Similarity=0.122 Sum_probs=126.9
Q ss_pred cceEEEEeCCCC--eEEEEEcCCCC-CcceEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----cCCCCCC
Q 011473 24 KAGLAISDRNSS--FVHIYDARADS-NEPLISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYW----SPHTLQF 91 (485)
Q Consensus 24 ~~~l~vs~s~d~--~I~iwd~~~~~-~~~~~~l~-----~h~~~V~~l~fspd~~~l~s~s~dg~i~~W----d~~t~~~ 91 (485)
+..+++.+.... .|.+....... .+.+..+. .....|.++.|-++...++.+..+|.|-+. +..+..
T Consensus 34 d~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~- 112 (928)
T PF04762_consen 34 DSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE- 112 (928)
T ss_pred CeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-
Confidence 455555554433 45554433111 12233332 235689999999999999999999999888 443211
Q ss_pred CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 92 PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+...-.-...|.+++||||+..||....++++-+-+ ++-..+....-+..... .-..
T Consensus 113 --------------~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~--------~~~~ 169 (928)
T PF04762_consen 113 --------------IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFG--------ESKH 169 (928)
T ss_pred --------------eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccC--------CCce
Confidence 111222335699999999999999999999887763 44444433311100000 0011
Q ss_pred ccccccchhh---------hhHhhhcc-----------CCCCCceEEECCCCCEEEEecC---CC----eEEEEcccCeE
Q 011473 172 EAIDFGRRMA---------VEKEIEKT-----------ETAPPSNAIFDESSNFLIYATL---LG----IKIVNLHTNKV 224 (485)
Q Consensus 172 ~~~~~g~~~~---------~~~~i~~~-----------~~~~~~~i~fd~~g~~l~~~s~---~~----i~v~d~~tg~~ 224 (485)
-++.||++-. .++.++.+ ....-..|+|=.||+|+++.+. .+ +|||+-+ |++
T Consensus 170 VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 170 VSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred eeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE
Confidence 1222222210 01111111 1223468999999999999875 22 7888865 555
Q ss_pred EEeecccC---------Ccccee----------eeeeccCCccCcceeeeecccccc--ccCCCCCCCCeEEEeeecCce
Q 011473 225 SRILGKVE---------NNDRFL----------RIALYQGDRSSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHR 283 (485)
Q Consensus 225 v~~~~~~~---------~~~r~~----------~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~ 283 (485)
..+-+.-. .+...+ .+.+|-....+-+-..+....... ....|+ +|+.+||--.+|.
T Consensus 249 ~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~- 326 (928)
T PF04762_consen 249 QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR- 326 (928)
T ss_pred EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-
Confidence 54443211 011111 122232111111222222211111 456777 8888888877665
Q ss_pred EEEEec
Q 011473 284 IYLFSR 289 (485)
Q Consensus 284 i~~f~~ 289 (485)
|++|+.
T Consensus 327 vqLWt~ 332 (928)
T PF04762_consen 327 VQLWTR 332 (928)
T ss_pred ceEEEe
Confidence 999987
No 332
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.35 E-value=0.026 Score=57.48 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=88.2
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecC-CC---C---eEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKKVH-MG---P---VKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-~~---~---V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
++.+..++.+..+|.+ +++.+.+.... .. . ...+.-+| .+..+..++.+|.+..||.++++. .|
T Consensus 193 v~~~~~~g~v~ald~~--tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-----~W 265 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQ--TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-----LW 265 (377)
T ss_pred EEEECCCCEEEEEEcc--CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-----EE
Confidence 4555678899999987 66655543211 00 0 00010011 355777788899999999987642 23
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
... ... ... ...++.++..++.|+.+..+|..+|+.++.+..-. +
T Consensus 266 ~~~-------~~~----~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~---------------------~- 310 (377)
T TIGR03300 266 KRD-------ASS----YQG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK---------------------Y- 310 (377)
T ss_pred eec-------cCC----ccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEcccccc---------------------C-
Confidence 322 111 111 12256677778899999999999999876552100 0
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
....+... .|..|..++.++ +.++|..+|+++..+..+.
T Consensus 311 -------------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 311 -------------RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred -------------CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 00011122 355777777776 9999999999987775443
No 333
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.34 E-value=0.016 Score=58.74 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEE-eCC----------CcEEEEcCCCCCCCCceeEEEEc
Q 011473 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISA-DDK----------GIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~-s~d----------g~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.+++++||.+. ....+.+-.--+..=..+.|++.|++|+.- ..+ ..+.|.++.
T Consensus 200 kpa~~~i~sIp--~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------------- 263 (561)
T COG5354 200 KPAMVRILSIP--KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------------- 263 (561)
T ss_pred CCcEEEEEEcc--CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec--------------
Confidence 56788999886 444433322111122357889988865421 110 122233322
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+..+.....-+++|...+|+|+++.|++.+ .+..+.++|++.. +...+.+ +
T Consensus 264 -e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-----------------------~-- 316 (561)
T COG5354 264 -ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-----------------------Q-- 316 (561)
T ss_pred -ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-----------------------c--
Confidence 222222334578899999999999998876 6889999999765 4444433 0
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCC---C-eEEEEccc
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLL---G-IKIVNLHT 221 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~---~-i~v~d~~t 221 (485)
.-+.+.|+|.+++++.++.+ | |-+||...
T Consensus 317 -------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 317 -------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred -------------ccccccccCcccEEEEecCCccccceEEeccCC
Confidence 11477899999999998865 3 78888753
No 334
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.0024 Score=60.24 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=90.2
Q ss_pred CCCeEEEEEcCCCCCcceEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEe
Q 011473 33 NSSFVHIYDARADSNEPLISKKV---HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI 109 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~---h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~ 109 (485)
++++|..||.+ +++.+.+..- ....+ +. ..+++..++.++.++.+..||..+++. .|+......+
T Consensus 1 ~~g~l~~~d~~--tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-----~W~~~~~~~~--- 68 (238)
T PF13360_consen 1 DDGTLSALDPR--TGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKV-----LWRFDLPGPI--- 68 (238)
T ss_dssp -TSEEEEEETT--TTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEE-----EEEEECSSCG---
T ss_pred CCCEEEEEECC--CCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCE-----EEEeeccccc---
Confidence 36889999997 7888877753 22222 11 334667777778999999999988652 3333221111
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011473 110 LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
... . ..++..+..++.|+.++.+|..+|+.++.. ..... ..
T Consensus 69 ----~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~--------~~---------------------- 110 (238)
T PF13360_consen 69 ----SGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP--------PA---------------------- 110 (238)
T ss_dssp ----GSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC--------TC----------------------
T ss_pred ----cce---e-eecccccccccceeeeEecccCCcceeeeecccccc--------cc----------------------
Confidence 001 1 224556666778889999999999998884 22100 00
Q ss_pred cCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccC
Q 011473 189 TETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~ 232 (485)
.........+ ++..++.++.. .+..+|+.+|+++.......
T Consensus 111 -~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 111 -GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp -STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred -ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 0000112233 37777777754 59999999999987776543
No 335
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.00033 Score=73.29 Aligned_cols=119 Identities=16% Similarity=0.324 Sum_probs=84.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCC-CCCCCc-------
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHT-LQFPES------- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t-~~~~~~------- 94 (485)
++.++++. ..+.|++||.+. .+.+++++++|...|.++.|+.- ...+.+++.|++|+.||-.. -+.+..
T Consensus 170 ~p~vlass-hg~~i~vwd~r~-gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 170 DPNVLASS-HGNDIFVWDLRK-GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred Ccchhhhc-cCCceEEEeccC-CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence 34455554 467799999983 46889999999999999999873 45789999999999996532 111100
Q ss_pred -------------ee-------------------EEEEc-CCCceEEeecCCccEEEEEEcCCCC----------EEEEE
Q 011473 95 -------------EV-------------------SFRLK-SDTNLFEILKSKTTVSAIEVSPDGK----------QFSIT 131 (485)
Q Consensus 95 -------------~~-------------------~~~~~-~~~~l~~~~~~~~~v~~i~~spdg~----------~lat~ 131 (485)
.+ .|+.+ .-++++.|.||...|...-|-..+. .|+|=
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 00 02211 3467889999998887655543222 78999
Q ss_pred eCCCcEEEEECCC
Q 011473 132 SPDRRIRVFWFRT 144 (485)
Q Consensus 132 s~D~~I~iwd~~t 144 (485)
|.|.++|+|-+.+
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999998764
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.015 Score=61.30 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCc-ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNE-PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~-~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
....++-|++-|.+++|.-. .+. .+.+..+-.+.+..+..|++..++|.++..|.|.++-+.. ..|... .+...
T Consensus 44 t~~~l~~GsS~G~lyl~~R~--~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~-~~~t~- 118 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRH--TGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDL-DYVTP- 118 (726)
T ss_pred CCceEEEecccceEEEEecC--chhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcc-eeecc-
Confidence 45566667778999999864 222 2223334455666777899888888888889998886655 333220 00000
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t 144 (485)
.-+.|+..|++++||+||..|.+|-.-|+|..-.+.+
T Consensus 119 -----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 -----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 0123788999999999999999999999998887766
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.00032 Score=74.74 Aligned_cols=184 Identities=12% Similarity=0.122 Sum_probs=118.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCC-cEEEEcCCCCCCCCceeEEEEc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKG-IIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg-~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
....++-|+-.|.|++|++. ++........|.++|+.+.=+.||.++++.+ ... ...+|++..-
T Consensus 1112 ~~~hL~vG~~~Geik~~nv~--sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------------ 1177 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVS--SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------------ 1177 (1516)
T ss_pred CCceEEeeeccceEEEEEcc--CccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------------
Confidence 33455566678999999997 6777777789999999999999999766654 333 5679987541
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchh---HHHhhhcCCC-cccccccccc
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLE---VAQDLQRSDA-PLYRLEAIDF 176 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~---~i~~~~~~~~-~~~~~~~~~~ 176 (485)
....+.|.. -.++.||...+.=+.|+.-..+.|||++|+..+.+| .+... .-....++|. .++-.+.+.|
T Consensus 1178 -~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLW 1252 (1516)
T KOG1832|consen 1178 -GGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLW 1252 (1516)
T ss_pred -cCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceee
Confidence 222223433 356788877555566666678999999999887774 22221 1233455654 3333344555
Q ss_pred cchhhhhHhhhccCCC-CCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccC
Q 011473 177 GRRMAVEKEIEKTETA-PPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~-~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~ 232 (485)
..|.... |..-... .+-.=.|+|+|.-++.-| .|||+.|-++++....-.
T Consensus 1253 DvR~~~a--Ih~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1253 DVRIPEA--IHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred eeccHHH--HhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcCcccc
Confidence 6665421 1111111 223446999999877654 589999998888776544
No 338
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.13 E-value=0.04 Score=56.03 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=67.6
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceE
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLF 107 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~ 107 (485)
++.++.++.+.-+|.. +++.+....-......+.. .++..++.++.++.+..+|.++++. .|+......
T Consensus 68 v~v~~~~g~v~a~d~~--tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~-----~W~~~~~~~-- 136 (377)
T TIGR03300 68 VYAADADGTVVALDAE--TGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKE-----LWRAKLSSE-- 136 (377)
T ss_pred EEEECCCCeEEEEEcc--CCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcE-----eeeeccCce--
Confidence 4444567899999986 7777776653332112222 2467778888899999999988653 343332211
Q ss_pred EeecCCccEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 108 EILKSKTTVSA-IEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 108 ~~~~~~~~v~~-i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
+.+ ..+ .+..+..++.|+.++.||.++|+.++.++
T Consensus 137 --------~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 137 --------VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS 172 (377)
T ss_pred --------eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence 111 111 34566777889999999999999988774
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.13 E-value=0.0044 Score=66.76 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=101.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
.++.|+-...+..+|++ +.+..+...-..+.|+-++. +++.+..|+..|+|-+-|+.+++..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~--~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i-------------- 210 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLN--TEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI-------------- 210 (1118)
T ss_pred ceeecchhhheeeeecc--cceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee--------------
Confidence 34444455566777887 44444444333445777766 4688999999999999999885544
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC-----------
Q 011473 107 FEILKSKTTVSAIEVSPDGKQFSITS---------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA----------- 166 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s---------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~----------- 166 (485)
+.+..|++.+.++. -.|+.|+++| .|.-|+|||+++.+.+--+.-+..+ .-+++.|.
T Consensus 211 ht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred eeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecc
Confidence 44889999887644 4799999987 4778999999987764332111110 00011110
Q ss_pred cccc-cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEE
Q 011473 167 PLYR-LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVN 218 (485)
Q Consensus 167 ~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d 218 (485)
.-.+ .+....+...+-. -+......-+..+.++++|+.|+.+-..+ |++|-
T Consensus 288 Gq~q~vd~~~lsNP~~~~-~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSNPPAGV-KMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCCCccce-eEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 0000 1111111111100 01111122246788999999999998877 99996
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.08 E-value=0.058 Score=52.42 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=81.7
Q ss_pred CCcceEEEEeC-----CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC-------CCcEEE------
Q 011473 22 DVKAGLAISDR-----NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-------KGIIEY------ 83 (485)
Q Consensus 22 ~~~~~l~vs~s-----~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~-------dg~i~~------ 83 (485)
++++.+|.+.- ..|.|-|||+. .+.+.+.++..|--.-.-+.+.||++.|+.+.. .|..++
T Consensus 59 s~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 59 SPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred cCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 66777666643 25799999997 456777888877666678889999987766521 122232
Q ss_pred -----EcCCCCCCCCc---------------------eeE--EEE--------------cCCCceEEee-------cCCc
Q 011473 84 -----WSPHTLQFPES---------------------EVS--FRL--------------KSDTNLFEIL-------KSKT 114 (485)
Q Consensus 84 -----Wd~~t~~~~~~---------------------~~~--~~~--------------~~~~~l~~~~-------~~~~ 114 (485)
-|..++++... .+. .++ +.+..+..+. .-..
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNG 217 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCC
Confidence 35555553311 011 111 1111121111 1235
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEe
Q 011473 115 TVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~ 151 (485)
.+-+|+++++|..+|+.| .-+.+-+||..+|+++...
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 688999999999887666 5789999999999987654
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.00 E-value=0.064 Score=43.92 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011473 13 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+.|.+...++....| +.||+|..||||+- .+.+..+..+ +.|++|.-... ..++-+-.+|+|-+++-..
T Consensus 4 al~~~d~d~dg~~eL-lvGs~D~~IRvf~~----~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---- 72 (111)
T PF14783_consen 4 ALCLFDFDGDGENEL-LVGSDDFEIRVFKG----DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---- 72 (111)
T ss_pred EEEEEecCCCCcceE-EEecCCcEEEEEeC----CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc----
Confidence 455666555544444 44568999999984 3667777644 57788877666 6688899999999986532
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcC---CC-CEEEEEeCCCcEE
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DG-KQFSITSPDRRIR 138 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp---dg-~~lat~s~D~~I~ 138 (485)
=.|+.|+ +..+.++++.. || .-|++|..+|.|-
T Consensus 73 ---RlWRiKS----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---RLWRIKS----------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeecc----------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 0244332 22355555433 33 3688888888774
No 342
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.95 E-value=0.013 Score=59.35 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCc
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT 114 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~ 114 (485)
..|.++-.. .+...-..+..-.-++..++|||.|.+|++.... .|.+|+...+. -+..+. ..
T Consensus 11 ~~i~~f~~~-~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~--------------~l~~~~--~~ 72 (561)
T COG5354 11 AVISVFWNS-QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA--------------KLVRFR--HP 72 (561)
T ss_pred ceEEEeecC-ccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh--------------heeeee--cC
Confidence 345554332 1333333444466789999999999999987754 67899765422 122222 24
Q ss_pred cEEEEEEcCCCCEEEEEeCCCc---------------EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011473 115 TVSAIEVSPDGKQFSITSPDRR---------------IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~---------------I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.|..+.|||.+++|.|=+.... +.+||..+|.++..+......
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------------- 130 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------------- 130 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc----------------------
Confidence 5888999999999999765444 999999999999887431110
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeE
Q 011473 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKV 224 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~ 224 (485)
...+.-+.|+-+.+|+|.-..+.+++.++ |+.+
T Consensus 131 -----------~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~ 163 (561)
T COG5354 131 -----------YLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNI 163 (561)
T ss_pred -----------ccccceeeeeecchhhhhhccCeEEEEec-CCcc
Confidence 11123667888999988887777899887 5554
No 343
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.0086 Score=62.89 Aligned_cols=88 Identities=9% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC--CCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF--PESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~--~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
....|++|+....+++.++.||.+++.-+.+..- ....+.= ...-.--+.+.+|+..|.-+.|+-..+.|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa-~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA-ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc-ccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4568999999999999999999999984433111 1100000 000001134789999999999999999999989999
Q ss_pred cEEEEECCCCc
Q 011473 136 RIRVFWFRTGK 146 (485)
Q Consensus 136 ~I~iwd~~tg~ 146 (485)
.|.||-+-.|.
T Consensus 94 lIiVWmlykgs 104 (1189)
T KOG2041|consen 94 LIIVWMLYKGS 104 (1189)
T ss_pred eEEEEeeeccc
Confidence 99999876554
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.87 E-value=0.41 Score=45.64 Aligned_cols=207 Identities=12% Similarity=0.098 Sum_probs=100.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC--CCCCCce-eEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVH-MGPVKVMRYNPVFDTVISADDKGIIEYWSPHT--LQFPESE-VSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t--~~~~~~~-~~~~ 99 (485)
...+++.....+.|..++. +++.++++.-. .+-...|++..++.++++.-.++.+.+.+... ....... ..+.
T Consensus 33 ~~tLfaV~d~~~~i~els~---~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSL---DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS 109 (248)
T ss_dssp TTEEEEEETTTTEEEEEET---T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE
T ss_pred CCeEEEEECCCCEEEEEcC---CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe
Confidence 3556666667888888886 46777777622 35678899988888888776788887775522 1111110 0011
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT---GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t---g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
+ + ....+...+-.++|+|.++.|..+-.....+||.+.. +..+...+. ..+.
T Consensus 110 l--~----~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~--~~~~----------------- 164 (248)
T PF06977_consen 110 L--G----FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD--QDLD----------------- 164 (248)
T ss_dssp ---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE---HHHH-----------------
T ss_pred c--c----cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc--cccc-----------------
Confidence 0 0 0123445689999999988888887777777776643 222111110 0000
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC--eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceee
Q 011473 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG--IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~--i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
. ........++++|+|....|+.-|... +-.+| .+|+++..+.-..+ .. .+...-+..+++.-
T Consensus 165 --------~-~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g-~~----gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 165 --------D-DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRG-FH----GLSKDIPQPEGIAF 229 (248)
T ss_dssp ----------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STT-GG----G-SS---SEEEEEE
T ss_pred --------c-ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCc-cc----CcccccCCccEEEE
Confidence 0 001111246889988866555555443 66777 67777655422210 00 01001112222221
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
.+++.|++++ +-++||.|.
T Consensus 230 --------------d~~G~LYIvs-EpNlfy~f~ 248 (248)
T PF06977_consen 230 --------------DPDGNLYIVS-EPNLFYRFE 248 (248)
T ss_dssp ---------------TT--EEEEE-TTTEEEEEE
T ss_pred --------------CCCCCEEEEc-CCceEEEeC
Confidence 2677776665 788999884
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.84 E-value=0.053 Score=60.52 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcE
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 137 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I 137 (485)
..|.++.|.-+...++-+..+|.|.+-|.++... .....-...|.+++||||+..+|....++++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~---------------eivg~vd~GI~aaswS~Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL---------------EIVGNVDNGISAASWSPDEELLALITGRQTL 133 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce---------------eeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence 6899999999999888889999999888876321 1122234569999999999999999888776
Q ss_pred EE
Q 011473 138 RV 139 (485)
Q Consensus 138 ~i 139 (485)
.+
T Consensus 134 l~ 135 (1265)
T KOG1920|consen 134 LF 135 (1265)
T ss_pred EE
Confidence 54
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.05 Score=58.60 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=103.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCC-eEEEEEcCCCCEEEEEeCCC-----cEEEEcCCCCCCCC-cee
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP-VKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPE-SEV 96 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~-V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~t~~~~~-~~~ 96 (485)
.+..+|-|+.+|.|-+++- +.+.++.++.|... |..+-...+...|+|.+.|+ .+++||++.-+... ..+
T Consensus 34 ~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred CCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 4455666667888777764 35566888888777 66665544556888888775 48999886532111 001
Q ss_pred EEEEcCCCceEE--eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc
Q 011473 97 SFRLKSDTNLFE--ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 97 ~~~~~~~~~l~~--~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
.+..+ ++. +.....++.++++|.|=+.+|+|=.+|.|..+. |..+|..
T Consensus 111 ~~~~r----i~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~---GDi~RDr----------------------- 160 (933)
T KOG2114|consen 111 LYEHR----IFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK---GDILRDR----------------------- 160 (933)
T ss_pred eeeee----eeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc---Ccchhcc-----------------------
Confidence 11000 111 112356789999999999999999999998873 3332211
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCE-EEEecCCCeEEEEcccCeE--EEeecccC
Q 011473 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNF-LIYATLLGIKIVNLHTNKV--SRILGKVE 232 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~-l~~~s~~~i~v~d~~tg~~--v~~~~~~~ 232 (485)
|.| ..+......+++.++|-.+|+. |.+++...|+++.+. |+- +.++..+-
T Consensus 161 --gsr----~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G 214 (933)
T KOG2114|consen 161 --GSR----QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNG 214 (933)
T ss_pred --ccc----eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCC
Confidence 000 0111234456788898777776 555666679999887 443 34454443
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.82 E-value=0.0095 Score=64.29 Aligned_cols=114 Identities=11% Similarity=0.226 Sum_probs=85.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEcCCCCCCCCc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD---------KGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~---------dg~i~~Wd~~t~~~~~~ 94 (485)
+++++.+|...|+|-+=|.+ +.+.++++..|++.|.. |.-.|++|+||+. |..|++||+++.+....
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~--s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPN--SFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred cCcEEEeecccceEEeecCC--cCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 56788999999999999998 78999999999999875 5567899999985 56789999987654311
Q ss_pred --------------------eeE-----EEEcC----CC---ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011473 95 --------------------EVS-----FRLKS----DT---NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 95 --------------------~~~-----~~~~~----~~---~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.+. |++.- +. ..+.+......+.+.++|++|..+|.|-.++.|.+|-
T Consensus 262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111 22110 11 1122223345588999999999999999999999996
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0053 Score=63.70 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEE-EEEEcCCCCEEEEEeCCCc
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS-AIEVSPDGKQFSITSPDRR 136 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~i~~spdg~~lat~s~D~~ 136 (485)
..|.-+.|+|.-+++|.+-.+|.+.+.... -+.+.++.-+...++ +++|.|||+.+|.|=.||+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---------------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---------------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT 85 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec---------------cceeEeccCCCCccceeeeecCCCCEEEEEecCCe
Confidence 356778999999999999999977665432 112333443444455 9999999999999999999
Q ss_pred EEEEECCCCcEEEEe
Q 011473 137 IRVFWFRTGKLRRVY 151 (485)
Q Consensus 137 I~iwd~~tg~~~~~~ 151 (485)
|++-|+++|..+...
T Consensus 86 I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEEccCCCceecc
Confidence 999999999887663
No 349
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.0018 Score=69.27 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=90.2
Q ss_pred EeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhh
Q 011473 108 EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 187 (485)
Q Consensus 108 ~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 187 (485)
.|..|....+|++||-+.++|+.|+..|.|++|++.+|.....+..|...++-++.+.+.-..+.+..+.+.+..-+.+.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 46677788999999999999999999999999999999998888888887777766665555555555555444333332
Q ss_pred c-----cCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEee
Q 011473 188 K-----TETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRIL 228 (485)
Q Consensus 188 ~-----~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~ 228 (485)
. |....-..+.|+..-++-+.|+- +...+||++|+..+.++
T Consensus 1176 s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1176 STGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred cccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 2 22233467889888777777765 45899999999877763
No 350
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.74 E-value=0.023 Score=54.23 Aligned_cols=121 Identities=9% Similarity=0.111 Sum_probs=73.5
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCC---CcceEEEecC------------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEc
Q 011473 23 VKAGLAISDRNSSFVHIYDARADS---NEPLISKKVH------------MGPVKVMRYNPVFD--TVISADDKGIIEYWS 85 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~---~~~~~~l~~h------------~~~V~~l~fspd~~--~l~s~s~dg~i~~Wd 85 (485)
..+.++++|...|.|.+|.-.... .+....+++| ...|..+.|..++. .++-...|++|++|-
T Consensus 36 ~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWK 115 (460)
T COG5170 36 ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWK 115 (460)
T ss_pred cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeee
Confidence 356788898777999999753111 1122334455 35688888877654 566667899999995
Q ss_pred CCCC--CCCCc-ee--EEEEcC-----------------------CCceEEe-ecCCccEEEEEEcCCCCEEEEEeCCCc
Q 011473 86 PHTL--QFPES-EV--SFRLKS-----------------------DTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRR 136 (485)
Q Consensus 86 ~~t~--~~~~~-~~--~~~~~~-----------------------~~~l~~~-~~~~~~v~~i~~spdg~~lat~s~D~~ 136 (485)
+... ++... .+ .|.... .++.+.. ..|...+.+++|+.|...+++ +.|-.
T Consensus 116 iyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lS-aDdLr 194 (460)
T COG5170 116 IYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS-ADDLR 194 (460)
T ss_pred eecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeee-cccee
Confidence 4321 11000 00 011000 1111112 346677899999999988877 56889
Q ss_pred EEEEECCC
Q 011473 137 IRVFWFRT 144 (485)
Q Consensus 137 I~iwd~~t 144 (485)
|.+|++.-
T Consensus 195 INLWnl~i 202 (460)
T COG5170 195 INLWNLEI 202 (460)
T ss_pred eeeccccc
Confidence 99999863
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.64 E-value=0.068 Score=58.68 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=94.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCC-eEEEEEcCC-------CCEEEEEeCCCcEEEEcCCCCCCCCce
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP-VKVMRYNPV-------FDTVISADDKGIIEYWSPHTLQFPESE 95 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~-V~~l~fspd-------~~~l~s~s~dg~i~~Wd~~t~~~~~~~ 95 (485)
...++........++-.|+. .++.+..++.|... |..+ .|+ ......|=.+..+..||++--. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe--~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLE--RGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NK 565 (794)
T ss_pred cceEeecCCCCCceEEEecC--CCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCC---Cc
Confidence 34455555567788888997 88999999877654 5544 443 2233444456677889987421 11
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011473 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+++ ...+.+ ..+....|++=+.+| ++|+||.+|.||+|| +.|+.-++.
T Consensus 566 ~v~-----~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~------------------------ 613 (794)
T PF08553_consen 566 LVD-----SQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA------------------------ 613 (794)
T ss_pred eee-----cccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc------------------------
Confidence 111 111122 233456788888787 679999999999998 333221111
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcc
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 220 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~ 220 (485)
-.....++..|.-+.||++|+..|..-+-|+++.
T Consensus 614 -----------lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 -----------LPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred -----------CCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1122345678899999999999999888888864
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.59 E-value=0.099 Score=53.98 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE--cCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~W--d~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
..+.++|++.+....+-++.++.. .-+|+|||+.|+ +...||...+| |+.+...++ +..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---------------Lt~ 279 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---------------LTN 279 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---------------ccc
Confidence 468999997433334444445543 457999998654 66688988888 665533211 222
Q ss_pred CCccEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcE
Q 011473 112 SKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWFRTGKL 147 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s~-D~--~I~iwd~~tg~~ 147 (485)
..+.-..=.|||||++++-.+. .| .|.+.|...+..
T Consensus 280 ~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 280 GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 1122224579999999987764 33 456666655554
No 353
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0065 Score=59.83 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCcc
Q 011473 37 VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTT 115 (485)
Q Consensus 37 I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (485)
|+..+.. +.+...-+.+|...|..++|||..+ ++..++.+..|++.|+++-.... .+..+ ..
T Consensus 175 v~~l~~~--~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs--------------sy~a~-~~ 237 (463)
T KOG1645|consen 175 VQKLESH--DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS--------------SYIAY-NQ 237 (463)
T ss_pred eEEeccC--CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee--------------heecc-CC
Confidence 5555543 4444556678999999999999887 88899999999999998733222 24444 67
Q ss_pred EEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 011473 116 VSAIEVSPDGKQFSITS-PDRRIRVFWFRTGK 146 (485)
Q Consensus 116 v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~ 146 (485)
+++++|.-|...++-+| ..|.|.|||++..+
T Consensus 238 ~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 238 IWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 99999999876655555 68999999998644
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.40 E-value=0.1 Score=55.39 Aligned_cols=83 Identities=25% Similarity=0.241 Sum_probs=50.4
Q ss_pred ccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCC
Q 011473 114 TTVSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETA 192 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~ 192 (485)
..+..+++||||+++++++. +.+|.|.|+.+.+.+ |++.+.. |-.+..++.....
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~--~~~~~~~---------------------~~~vvaevevGlG- 376 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL--FDGKIKP---------------------RDAVVAEPELGLG- 376 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh--hhccCCc---------------------cceEEEeeccCCC-
Confidence 34577999999999877775 899999999876531 2211110 0001111111111
Q ss_pred CCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011473 193 PPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 193 ~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
-...+||++|+...+.-.+. |-.||+.+
T Consensus 377 -PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 -PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 13678999998444444454 88999876
No 355
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.029 Score=59.64 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC---CC-CEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP---VF-DTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp---d~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
....+++++...|.|.+||.. ....+..+..|.++|..+.|-| +. ..|+.-..-.++-+|+..+|+. .|
T Consensus 77 ~~~lliAsaD~~GrIil~d~~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-----~W 149 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFV--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-----FW 149 (1062)
T ss_pred ccceeEEeccccCcEEEEEeh--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-----ee
Confidence 356788888889999999997 5666777888999999999966 33 4677777778999998887542 12
Q ss_pred EEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011473 99 RLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~ 143 (485)
. ..-......|+.+.| |.++|..-+..|.+-+-+.-
T Consensus 150 k---------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 150 K---------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred c---------cccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 2 222334456678888 77788777777777776643
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.17 E-value=0.11 Score=58.09 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC--------
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP-------- 92 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~-------- 92 (485)
.+++..+++++ +|.|.+-|.. +. .+.....-...|.+++||||.++++-.+.++++.+- ..++...
T Consensus 78 ~d~~~i~v~~~--~G~iilvd~e--t~-~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d 151 (1265)
T KOG1920|consen 78 ADTNSICVITA--LGDIILVDPE--TL-ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFM-TKDFEPIAEKPLDAD 151 (1265)
T ss_pred cccceEEEEec--CCcEEEEccc--cc-ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEE-eccccchhccccccc
Confidence 44555555554 5778888875 22 222233345789999999999999999888887653 1111111
Q ss_pred -----C-ceeEEEEcCCCceEE-------------ee--c---CCccEEEEEEcCCCCEEEEEe----CC-CcEEEEECC
Q 011473 93 -----E-SEVSFRLKSDTNLFE-------------IL--K---SKTTVSAIEVSPDGKQFSITS----PD-RRIRVFWFR 143 (485)
Q Consensus 93 -----~-~~~~~~~~~~~~l~~-------------~~--~---~~~~v~~i~~spdg~~lat~s----~D-~~I~iwd~~ 143 (485)
+ ..+.|--+ .+.++. .+ + -...=++|+|--||++||+.. .+ ++|+|||-+
T Consensus 152 ~~~~sk~v~VGwGrk-eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE 230 (1265)
T KOG1920|consen 152 DERKSKFVNVGWGRK-ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE 230 (1265)
T ss_pred cccccccceeccccc-ceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc
Confidence 0 01222110 011110 00 0 011125689999999999943 35 899999977
Q ss_pred CCcEEEEeccchhHHHhhhcCCC-----ccccccccc---ccchhhh---hHhhhccCCCC-CceEEECCCCCEEEE---
Q 011473 144 TGKLRRVYDESLEVAQDLQRSDA-----PLYRLEAID---FGRRMAV---EKEIEKTETAP-PSNAIFDESSNFLIY--- 208 (485)
Q Consensus 144 tg~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~---~g~~~~~---~~~i~~~~~~~-~~~i~fd~~g~~l~~--- 208 (485)
|.+-.+-......-.+++|-|. +++.-.+.. +=.|-.. +..+.-..... +..++|..++..|+.
T Consensus 231 -g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~ 309 (1265)
T KOG1920|consen 231 -GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTS 309 (1265)
T ss_pred -chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeec
Confidence 5442211111111122223221 001100000 0000011 11122222322 789999999999998
Q ss_pred ecCCC-eEEEEccc
Q 011473 209 ATLLG-IKIVNLHT 221 (485)
Q Consensus 209 ~s~~~-i~v~d~~t 221 (485)
..... |++|-+..
T Consensus 310 ~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGN 323 (1265)
T ss_pred ccccceEEEEEecC
Confidence 33334 88887643
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.066 Score=57.60 Aligned_cols=71 Identities=10% Similarity=0.240 Sum_probs=58.3
Q ss_pred cCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEc
Q 011473 7 LPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWS 85 (485)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd 85 (485)
.|+...++||. |...+++.|-.-|.+.+|... ....++.. .|..+|..+.|||+|..++|++.-|.+.+|.
T Consensus 58 ~P~hatSLCWH-----pe~~vLa~gwe~g~~~v~~~~---~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 58 YPVHATSLCWH-----PEEFVLAQGWEMGVSDVQKTN---TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred cceehhhhccC-----hHHHHHhhccccceeEEEecC---CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 45666777884 566788888888999999875 34455554 7999999999999999999999999999993
No 358
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.07 E-value=0.49 Score=48.49 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=80.5
Q ss_pred eCCCCeEEEEEcCCCCCcceEEEecCCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 31 DRNSSFVHIYDARADSNEPLISKKVHMG-------PVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 31 ~s~d~~I~iwd~~~~~~~~~~~l~~h~~-------~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++.++.+..+|.. +++.+...+.... ....+.-+| .+..+..++.+|.+...|..+++. .|+..
T Consensus 211 ~~~~g~v~a~d~~--~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-----~W~~~ 283 (394)
T PRK11138 211 GGDNGRVSAVLME--QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-----VWKRE 283 (394)
T ss_pred EcCCCEEEEEEcc--CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-----EEeec
Confidence 4467888888876 5665554431100 000111122 245666677888888888887642 23322
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011473 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
.+ . ...+.. ++..+..++.|+.+..+|..+|+.+...+... ++
T Consensus 284 ~~-------~----~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---------------------~~--- 326 (394)
T PRK11138 284 YG-------S----VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL---------------------HR--- 326 (394)
T ss_pred CC-------C----ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC---------------------CC---
Confidence 11 0 111122 45667777889999999999998876542100 00
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011473 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
...+.+. .+.+|..++.++ +.++|..+|+++....
T Consensus 327 -----------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 327 -----------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred -----------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 0011112 244566677776 8999999999876553
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.88 E-value=1.9 Score=44.54 Aligned_cols=180 Identities=13% Similarity=0.197 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC---CC---------C----------
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ---FP---------E---------- 93 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~---~~---------~---------- 93 (485)
.|+||+. .+.++.++.--.+.|.++.|+.+ +.|+....||.++++|..... .+ .
T Consensus 62 ~I~iys~---sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS---SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC---CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 5999987 47788887644489999999885 456666789999999873111 00 0
Q ss_pred ceeE--------EEE--------------------------------------------cCCCceEEeecCC-------c
Q 011473 94 SEVS--------FRL--------------------------------------------KSDTNLFEILKSK-------T 114 (485)
Q Consensus 94 ~~~~--------~~~--------------------------------------------~~~~~l~~~~~~~-------~ 114 (485)
..+. |.+ ..+..++.+..+. +
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~ 217 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDG 217 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCC
Confidence 0000 000 0011122122221 4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc-hhHHHhhhcCCC-cccccccccccchhhhhHhhhccCCC
Q 011473 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES-LEVAQDLQRSDA-PLYRLEAIDFGRRMAVEKEIEKTETA 192 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~~~g~~~~~~~~i~~~~~~ 192 (485)
++..+++||+|+++|....++.+.+.+..-.+++..++-. ......+.|... ++.- ..+.++.-- ..
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l----------~~~~~l~lv-g~ 286 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL----------SWEDELLLV-GP 286 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE----------EeCCEEEEE-CC
Confidence 6899999999999999999999999987766666666433 111122333221 1100 000111100 01
Q ss_pred CCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecc
Q 011473 193 PPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 193 ~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~ 230 (485)
.-..+.|.-++..++..-.||+||+....-+.++.+..
T Consensus 287 ~~~~~~~~~~~~~~l~~E~DG~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 287 DGDSISFWYDGPVILVSEIDGVRIITSTSHEFLQRVPD 324 (410)
T ss_pred CCCceEEeccCceEEeccCCceEEEeCCceEEEEECCH
Confidence 11345666666667777778888887777777666644
No 360
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.87 E-value=0.033 Score=56.81 Aligned_cols=101 Identities=22% Similarity=0.410 Sum_probs=64.1
Q ss_pred EEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCCceEEEEc
Q 011473 340 DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMA 419 (485)
Q Consensus 340 ~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~ 419 (485)
.+.+||.+. +|.++++|+.+.+.|.+. +-+...-| |. ....-|...+.|+ +...++|+|.+.
T Consensus 202 y~evE~~~~-~p~s~EH~la~~~~G~~~---Vd~~tsTf-i~----------d~~L~g~~~p~En---~~~R~rGtVTVR 263 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALMEDGTFR---VDYRTSTF-IS----------DDSLRGLDKPEEN---IEKRRRGAVTVR 263 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHHhCCeEE---Eeeeecce-Ee----------cccccCccCCccc---cCcccceeEEEE
Confidence 366787666 999999999999988532 01111111 11 1111233444454 233467999999
Q ss_pred ccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 011473 420 NAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIE 461 (485)
Q Consensus 420 ~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~ 461 (485)
+.|.+. -..||--.+.+ ..-.|+|+|+|+.|||+++--+
T Consensus 264 n~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 264 NSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred eeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 987552 25788766554 3456999999999999986443
No 361
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.03 Score=55.28 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=63.3
Q ss_pred eecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhh
Q 011473 109 ILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIE 187 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~ 187 (485)
+.++...|.+++|||..+ .+..++.+.+|+|.|+++..++..+..
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---------------------------------- 234 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---------------------------------- 234 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec----------------------------------
Confidence 556778899999999887 788889999999999999988877643
Q ss_pred ccCCCCCceEEECCCCCEEEEecCC-C-eEEEEccc
Q 011473 188 KTETAPPSNAIFDESSNFLIYATLL-G-IKIVNLHT 221 (485)
Q Consensus 188 ~~~~~~~~~i~fd~~g~~l~~~s~~-~-i~v~d~~t 221 (485)
...+++++||.+....+||+.. | |-++|...
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 1245799999999999999874 4 89999864
No 362
>PRK00969 hypothetical protein; Provisional
Probab=95.78 E-value=0.033 Score=56.97 Aligned_cols=101 Identities=25% Similarity=0.411 Sum_probs=64.2
Q ss_pred EEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCCceEEEEc
Q 011473 340 DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMA 419 (485)
Q Consensus 340 ~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~ 419 (485)
.+.++|.++ +|.++++|+.+.+.|.+. +-+...-| |. ....-|...+.|+ +...++|+|.+.
T Consensus 205 y~eve~~~~-~p~s~EH~la~~~~G~f~---Vd~~tstf-I~----------d~~L~g~~~p~En---~~~R~~GtVTVR 266 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALLEDGTFE---VDFETSTF-IA----------DDRLQGLKIPEEN---FEPRRRGTVTVR 266 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHHhCCeEE---Eeeeecce-Ee----------eccccCccCCccc---cCccccceEEEE
Confidence 366788776 999999999999988532 00110111 11 1111133344454 233466999999
Q ss_pred ccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 011473 420 NAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIE 461 (485)
Q Consensus 420 ~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~ 461 (485)
+.|.+. -..||--.+.+ ..-.|+|+|+|+.|||+++--+
T Consensus 267 t~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 267 TAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred eeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 987553 35788766554 3446999999999999986433
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.73 E-value=0.0039 Score=64.74 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=98.1
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC-CEEEEEe----CCCcEEEEcC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF-DTVISAD----DKGIIEYWSP 86 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s----~dg~i~~Wd~ 86 (485)
.|++|.+.. +.-+++.|..+|.|-+-.++..-..--....+|..+.++++|++-. ..||.+- .|..+.|||+
T Consensus 60 kcva~~y~~---d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 60 KCVASFYGN---DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred eeehhhcCC---chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345555442 3335555667799999877621112123345899999999999954 4555542 4568999999
Q ss_pred CCC-CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011473 87 HTL-QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 87 ~t~-~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
.+. ..|.....| .+ +.-..+.+++|-.|.+.+.+|...+.++++|++....- ...+.
T Consensus 137 ~s~ltvPke~~~f--s~--------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~------~~svn------ 194 (783)
T KOG1008|consen 137 NSLLTVPKESPLF--SS--------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS------VSSVN------ 194 (783)
T ss_pred ccccCCCcccccc--cc--------ccccCccccccccCcchhhcccccchhhhhhhhhhhhh------hhhhh------
Confidence 774 233331111 11 12233558889999999999999999999998732110 00000
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCCCeEEEEc
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLLGIKIVNL 219 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~i~v~d~ 219 (485)
...+..+..|| .+.|+++-..+-|-+||.
T Consensus 195 -------------------------Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 195 -------------------------TKYVQGITVDPFSPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred -------------------------hhhcccceecCCCCCceeccccCceeeccc
Confidence 00124567788 888888877555999994
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.68 E-value=2.3 Score=45.42 Aligned_cols=228 Identities=15% Similarity=0.085 Sum_probs=115.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-CCeE---E-------EEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHM-GPVK---V-------MRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-~~V~---~-------l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+++.++ +.++.|+-.|.+ +++.+.++.... ..+. + +++ .+..++.++.|+.+...|.+|++.
T Consensus 70 g~vyv~-s~~g~v~AlDa~--TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-- 142 (527)
T TIGR03075 70 GVMYVT-TSYSRVYALDAK--TGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-- 142 (527)
T ss_pred CEEEEE-CCCCcEEEEECC--CCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE--
Confidence 444443 356778888886 777777664211 1111 1 122 234566677888888889888664
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcC---CCCEEEEEe-----CCCcEEEEECCCCcEEEEeccchhHHH--hhhc
Q 011473 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DGKQFSITS-----PDRRIRVFWFRTGKLRRVYDESLEVAQ--DLQR 163 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp---dg~~lat~s-----~D~~I~iwd~~tg~~~~~~~~~~~~i~--~~~~ 163 (485)
.|+.... .+.. -..+.-+| ++..++..+ .++.|.-+|.+||+.+..++.-...-. ....
T Consensus 143 ---~W~~~~~-------~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~ 211 (527)
T TIGR03075 143 ---VWSKKNG-------DYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKAD 211 (527)
T ss_pred ---Eeecccc-------cccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccc
Confidence 2332211 0000 00111112 454443322 268999999999999988743110000 0000
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-----------------CeEEEEcccCeEEE
Q 011473 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-----------------GIKIVNLHTNKVSR 226 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-----------------~i~v~d~~tg~~v~ 226 (485)
.+. ..+.|-..-.....+......+..+++||.-.+|..++-. .|--.|+.||++.-
T Consensus 212 ~~~------~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 212 KPV------GGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred ccc------ccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence 000 0000000000001112233455678999988877777611 35667888999886
Q ss_pred eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCC---eEEEeeecCceEEEEecCCCCCC
Q 011473 227 ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP---TLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 227 ~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.+..... .+|.=...... ..+++ +.|+ .+++.+.+++.+|+++|+..+..
T Consensus 286 ~~Q~~~~-------D~wD~d~~~~p-~l~d~-----------~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 286 HYQTTPH-------DEWDYDGVNEM-ILFDL-----------KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eeeCCCC-------CCccccCCCCc-EEEEe-----------ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 6544210 12211000011 11111 1233 37889999999999999876653
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.66 E-value=0.2 Score=51.93 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=63.1
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE
Q 011473 52 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 52 ~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~ 131 (485)
.+....-....+.+||+++.++.++. |...++..... -.+..+.....+|++++ .+|+-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g~-geY~iyt~~~~-------------------r~k~~G~g~~~vw~~~n-~yAv~ 85 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCGD-GEYEIYTALAW-------------------RNKAFGSGLSFVWSSRN-RYAVL 85 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEET-TEEEEEETTTT-------------------EEEEEEE-SEEEE-TSS-EEEEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEcC-CEEEEEEccCC-------------------cccccCceeEEEEecCc-cEEEE
Confidence 33344456789999999999888775 44445432110 01112345678899955 46777
Q ss_pred eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC
Q 011473 132 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL 211 (485)
Q Consensus 132 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~ 211 (485)
...++|+|+.--+.+..+.+.. + .. ..=.|. |++|+..+.
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~------------------~-------------------~~-~~~If~--G~LL~~~~~ 125 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKL------------------P-------------------FS-VEKIFG--GNLLGVKSS 125 (443)
T ss_dssp -TTS-EEEEETTEE-TT-----------------------S-------------------S--EEEEE---SSSEEEEET
T ss_pred ECCCeEEEEEcCccccceEEcC------------------C-------------------cc-cceEEc--CcEEEEECC
Confidence 7788999973222111111100 0 00 122344 998998888
Q ss_pred CCeEEEEcccCeEEEeeccc
Q 011473 212 LGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 212 ~~i~v~d~~tg~~v~~~~~~ 231 (485)
+.|.+||+.++++++.+.-.
T Consensus 126 ~~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp TEEEEE-TTT--EEEEESS-
T ss_pred CCEEEEEhhHcceeeEEecC
Confidence 88999999999999998653
No 366
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.64 Score=50.49 Aligned_cols=158 Identities=11% Similarity=0.148 Sum_probs=99.8
Q ss_pred eEEEEeCCCC-----eEEEEEcCCC---C-Ccce--EEEec-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEE--cCC
Q 011473 26 GLAISDRNSS-----FVHIYDARAD---S-NEPL--ISKKV-----HMGPVKVMRYNPVFDTVISADDKGIIEYW--SPH 87 (485)
Q Consensus 26 ~l~vs~s~d~-----~I~iwd~~~~---~-~~~~--~~l~~-----h~~~V~~l~fspd~~~l~s~s~dg~i~~W--d~~ 87 (485)
.++++-++|+ .++|||++.. + ..++ +.+.. ...|+.+++.|.+-+.+|.|=.+|.|.+. |+.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 3555554443 5999998521 1 2334 22223 35678999999998888888899999887 332
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEeccchhHHHhhhcCC
Q 011473 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~ 165 (485)
.-+ +....-....+.+|+.+++..|++.++-+..-..|.+|.+. |+- ..+++.
T Consensus 158 RDr------------gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~------------ 212 (933)
T KOG2114|consen 158 RDR------------GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDN------------ 212 (933)
T ss_pred hcc------------ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeecc------------
Confidence 110 11111123456789999999999874444556678999886 443 333322
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeec-ccC
Q 011473 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG-KVE 232 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~-~~~ 232 (485)
.+.+..+.+|++...-++.+....+.+++....+...+++ ++.
T Consensus 213 ------------------------~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 213 ------------------------NGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ------------------------CCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 2334456777755554777777778888887666667776 544
No 367
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.017 Score=61.83 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011473 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
..|+|-||-- +++|.+... ..-.+++++|||..-.|+++=.-|.+.+|...+.+.... ...|
T Consensus 39 r~GSVtIfad---tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv--------------~~th 100 (1416)
T KOG3617|consen 39 RGGSVTIFAD---TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV--------------VETH 100 (1416)
T ss_pred CCceEEEEec---CCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee--------------ccCC
Confidence 4688999842 455544322 112356799999888888888889999997765332221 4568
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 113 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
+.++..+.|||+|..+.|+-.-|.+.+|...
T Consensus 101 ~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 101 PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 8999999999999999999999999999764
No 368
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.53 E-value=1.8 Score=40.24 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=104.1
Q ss_pred ecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 011473 6 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPVFDTVISADDKGI 80 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~fspd~~~l~s~s~dg~ 80 (485)
+....|.+.+-+...+-|.. .+|..+..-.|-=||.-.+.....+++. ..+.+.+.-..+|+|++.+---.|-.
T Consensus 53 ~ie~p~~ag~ilpv~~~~q~-~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~ 131 (310)
T KOG4499|consen 53 KIEGPPSAGFILPVEGGPQE-FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFG 131 (310)
T ss_pred EEecCcceeEEEEecCCCce-EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecccc
Confidence 44556665556666555544 4555444444555885322334444422 12344555567899998553322211
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCcEEEEeccchhH
Q 011473 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF-SITSPDRRIRVFW--FRTGKLRRVYDESLEV 157 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~l-at~s~D~~I~iwd--~~tg~~~~~~~~~~~~ 157 (485)
- +++. .+ ...|.+..+..+..+...-..-+.++|+.|.+.| .+-+.+-.|.-|| ..+|.+...
T Consensus 132 ~---~le~---~~-g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr------- 197 (310)
T KOG4499|consen 132 D---DLEP---IG-GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR------- 197 (310)
T ss_pred c---cccc---cc-cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCc-------
Confidence 1 1110 00 0011111122222222222334678999888766 4556788887888 677765211
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011473 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
..++.+... +..+...--.++-|-+|++.++.=+.+ |..+|..||+++..+.-...
T Consensus 198 --------~~i~dlrk~------------~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~--- 254 (310)
T KOG4499|consen 198 --------KVIFDLRKS------------QPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP--- 254 (310)
T ss_pred --------ceeEEeccC------------CCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC---
Confidence 111111100 000111112445588888766665555 89999999999988876542
Q ss_pred eeeeeeccCC
Q 011473 237 FLRIALYQGD 246 (485)
Q Consensus 237 ~~~~s~~~~~ 246 (485)
-+.-.||+|+
T Consensus 255 qitsccFgGk 264 (310)
T KOG4499|consen 255 QITSCCFGGK 264 (310)
T ss_pred ceEEEEecCC
Confidence 2344678874
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.52 E-value=1.6 Score=43.12 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC--CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011473 107 FEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRT--GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~t--g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
..+..+-...+.|+|||||+.|..+- ..+.|.-|++.. +..- +++....
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~ 207 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVD 207 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEE
Confidence 33444455568899999997766554 347777777642 2110 0000000
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEcccCeEEEeecccCCccceeeeeeccC
Q 011473 184 KEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTNKVSRILGKVENNDRFLRIALYQG 245 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~ 245 (485)
.. . ....--.++.|.+|++-+++-.. .|.+|+.. |+++..+.-.. ....--+|+|
T Consensus 208 ~~--~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG 264 (307)
T COG3386 208 FD--E-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGG 264 (307)
T ss_pred cc--C-CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCccceEeC
Confidence 00 0 01112367889999987655554 59999998 99988886653 3344456766
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.22 Score=51.47 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=63.1
Q ss_pred CCc-ceEEEEeCCCCeEEEE--EcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE--cCCCCCCCCce
Q 011473 22 DVK-AGLAISDRNSSFVHIY--DARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYW--SPHTLQFPESE 95 (485)
Q Consensus 22 ~~~-~~l~vs~s~d~~I~iw--d~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~W--d~~t~~~~~~~ 95 (485)
+|+ .+++.+...|+...|| |+. ..+ +..|..-.+.-+.=.|+|||+.++ +.+..|.-.|| |.+....
T Consensus 246 spDG~~l~f~~~rdg~~~iy~~dl~--~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---- 318 (425)
T COG0823 246 SPDGSKLAFSSSRDGSPDIYLMDLD--GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---- 318 (425)
T ss_pred CCCCCEEEEEECCCCCccEEEEcCC--CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----
Confidence 454 4466677777765555 554 333 334543222223567999999765 45566776776 5543211
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCcEEEEe
Q 011473 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD-RR--IRVFWFRTGKLRRVY 151 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D-~~--I~iwd~~tg~~~~~~ 151 (485)
....+.... -..-.|||||++++..+.. +. |-+.|+.++.-++.+
T Consensus 319 ---------~riT~~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 319 ---------TRLTFSGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ---------eEeeccCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 111122111 1256799999999888753 33 666666665544443
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.27 E-value=0.047 Score=37.47 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=30.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011473 114 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
..|.+++|||...++|.+..||.|.+|.+ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 45899999999999999999999999998 66643
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.20 E-value=0.49 Score=49.15 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=75.6
Q ss_pred CCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE-cC
Q 011473 8 PFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW-SP 86 (485)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W-d~ 86 (485)
.+.|..+.+ +|+++.++-+ .||.-.||... .... .. .+.-....|.+. ..+|.-...+.|++. +.
T Consensus 32 ~~~p~~ls~-----npngr~v~V~-g~geY~iyt~~--~~r~-k~----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 32 EIYPQSLSH-----NPNGRFVLVC-GDGEYEIYTAL--AWRN-KA----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp SS--SEEEE------TTSSEEEEE-ETTEEEEEETT--TTEE-EE----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETT
T ss_pred CcCCeeEEE-----CCCCCEEEEE-cCCEEEEEEcc--CCcc-cc----cCceeEEEEecC-ccEEEEECCCeEEEEEcC
Confidence 344555433 3455555544 47888888753 2221 11 233456789884 457777778899996 43
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCC
Q 011473 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~ 166 (485)
.... ...++-. ..+..|-- |..|+..+.+ .|.+||+.+++.++.++-.
T Consensus 98 ~~~~---------------~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~------------ 145 (443)
T PF04053_consen 98 KNEV---------------VKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS------------ 145 (443)
T ss_dssp EE-T---------------T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-------------
T ss_pred cccc---------------ceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC------------
Confidence 2100 0001110 11222222 8888777655 8999999999999988531
Q ss_pred cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcc
Q 011473 167 PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 220 (485)
Q Consensus 167 ~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~ 220 (485)
.+..+.|+++|++++..+.+.+.+++-.
T Consensus 146 --------------------------~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 146 --------------------------AVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp --------------------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred --------------------------CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 1247899999999999999998887643
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.07 Score=55.74 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=55.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVK-VMRYNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~-~l~fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
.|.--++|.+..+|.|-++.++ .+.+.+++-|..+|+ +++|.|||+.||.|=.||+|++-|++++.
T Consensus 29 nP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3444577777789999999884 677889987888888 99999999999999999999999998754
No 374
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.12 E-value=5.3 Score=42.25 Aligned_cols=27 Identities=22% Similarity=0.087 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 127 QFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.++.++.++.+...|.++|+.++..+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEe
Confidence 577788899999999999999987754
No 375
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.02 E-value=3.1 Score=44.03 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=90.3
Q ss_pred EeCCCCeEEEEEcCCCCCcceEEEecCCC------CeE--EEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011473 30 SDRNSSFVHIYDARADSNEPLISKKVHMG------PVK--VMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 30 s~s~d~~I~iwd~~~~~~~~~~~l~~h~~------~V~--~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.++.++.++-.|.+ +++.+.+++.... ++. .+.+. ++..++.++.++.|..+|.++++. .|++.
T Consensus 66 ~~~~~g~l~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-----~W~~~ 137 (488)
T cd00216 66 FTTSHSALFALDAA--TGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-----VWKFG 137 (488)
T ss_pred EeCCCCcEEEEECC--CChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-----eeeec
Confidence 34457888888887 7777766653221 111 11111 225777778899999999988653 34443
Q ss_pred CCCce-EEeecCCccEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011473 102 SDTNL-FEILKSKTTVSAIEVSPDGKQFSITS---------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 102 ~~~~l-~~~~~~~~~v~~i~~spdg~~lat~s---------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
..... ..+.-. .+..+. + .+++.++ .++.+.-+|..||+.++.++-....... ...
T Consensus 138 ~~~~~~~~~~i~----ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~--------~~~ 203 (488)
T cd00216 138 NNDQVPPGYTMT----GAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA--------FPT 203 (488)
T ss_pred CCCCcCcceEec----CCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC--------CCC
Confidence 22211 000000 011111 2 3344443 4688999999999999887431100000 000
Q ss_pred ccccccchhhhhHhhhc-cCCCCCceEEECCCCCEEEEecCC-------------------CeEEEEcccCeEEEeec
Q 011473 172 EAIDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATLL-------------------GIKIVNLHTNKVSRILG 229 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~-------------------~i~v~d~~tg~~v~~~~ 229 (485)
... + ..+.. .......+.++|+.+..++.++.+ .+.-+|..||+++..+.
T Consensus 204 ~~~--~------~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 204 WGP--D------RQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCC--C------cceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 000 0 00000 111223467888877777777644 37888999999886653
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=2.6 Score=42.96 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=96.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEcCCCCCCCCceeEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD---KGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~---dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
..++.+....++.|.+.|.. +....+... +. ....++++|+++.+..+.. ++++-+-|..+.+.
T Consensus 85 ~~~vyv~~~~~~~v~vid~~--~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-------- 152 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTA--TNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-------- 152 (381)
T ss_pred CCeEEEecCCCCeEEEEcCc--ccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--------
Confidence 34466666667899999976 556666654 33 4578999999976655544 57777777766332
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+........+ ..++++|+|+++.... .++.|.+.|..+.+..+ -.. ...+
T Consensus 153 ------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~-~~~~-------------------- 203 (381)
T COG3391 153 ------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV-GSLV-------------------- 203 (381)
T ss_pred ------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc-cccc--------------------
Confidence 2222222233 8899999999665544 78999999977666543 100 0000
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEe
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRI 227 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~ 227 (485)
.....-..+.++|+|+++-..-.. .+.+.|..++.+...
T Consensus 204 ----------~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 204 ----------GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ----------ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 000011478899999966554432 478888888877654
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.98 E-value=0.33 Score=52.12 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcce--EEEecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011473 21 GDVKAGLAISDRNSSFVHIYDARADSNEPL--ISKKVHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~--~~l~~h~~~V~~l~fs--pd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
++..+++++..++...+.|||.+ .+... .++ ...+.|..+.|. ||++.+++.+....|.++.-..+.......
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~--~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTR--SGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcC--CcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 45566777776667789999997 44433 233 456899999985 689999999999999998432221111111
Q ss_pred EEEEcCCCceE--EeecCC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 97 SFRLKSDTNLF--EILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 97 ~~~~~~~~~l~--~~~~~~-~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
.|. ++. .+..++ .+|.+..|-+||..++.+ +..+.|+|-.
T Consensus 114 ~w~-----~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWA-----PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccc-----eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 111 111 123343 568899999999876543 4678888743
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.91 E-value=1.6 Score=35.82 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=46.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011473 60 VKVMRYNP---VF-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 60 V~~l~fsp---d~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
|++|++.+ || +.|+.||.|..||+|+-+ ..+.++.. ...|++++-... .+|+.+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----------------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----------------EIVAEITE-TDKVTSLCSLGG-GRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----------------cEEEEEec-ccceEEEEEcCC-CEEEEEecCC
Confidence 66777654 33 479999999999999653 23334443 345777766665 6789999999
Q ss_pred cEEEEEC
Q 011473 136 RIRVFWF 142 (485)
Q Consensus 136 ~I~iwd~ 142 (485)
+|-+|+-
T Consensus 64 TVGvY~~ 70 (111)
T PF14783_consen 64 TVGVYDR 70 (111)
T ss_pred EEEEEeC
Confidence 9999974
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.73 Score=47.56 Aligned_cols=147 Identities=9% Similarity=0.082 Sum_probs=89.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC--EEE-----EEeCCCcEEEEcCCCCCCCCceeE
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD--TVI-----SADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~--~l~-----s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
..++.++.....++-.|+. .++.+.+++-|.. |+-+.+.|+.+ .+. .|=.|..|.-||++-.... .+.
T Consensus 346 nlil~~~~~~~~l~klDIE--~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~ 420 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIE--RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLA 420 (644)
T ss_pred ceEeeCCCCcCcceeeecc--cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eee
Confidence 4455566555667777776 7888888887776 88888998754 222 2234667777888632110 111
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
|. .-+.+.+ +....|.+=.-+| ++|+||.+|.||+||- .|+..++. +
T Consensus 421 ~~-----q~kqy~~-k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-------------------l------ 467 (644)
T KOG2395|consen 421 VV-----QSKQYST-KNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-------------------L------ 467 (644)
T ss_pred ee-----ecccccc-ccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-------------------c------
Confidence 10 0001111 1224555555565 7899999999999995 54432221 0
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEc
Q 011473 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNL 219 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~ 219 (485)
.....++..|.-+.+|++|+..|...+-+.++
T Consensus 468 ----------PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 468 ----------PGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ----------cccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 01123445677788999999998887777775
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.83 E-value=2.1 Score=42.43 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCC
Q 011473 35 SFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQ 90 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~ 90 (485)
+.|.++|.. +++.+-.+. +... .+..+||++.+.+++ ..-.|.+||..|.+
T Consensus 17 ~rv~viD~d--~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~ 78 (342)
T PF06433_consen 17 SRVYVIDAD--SGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS 78 (342)
T ss_dssp EEEEEEETT--TTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred ceEEEEECC--CCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc
Confidence 479999986 677777766 3332 356799999887653 34588999998853
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.075 Score=58.74 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 011473 68 VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 68 d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~ 147 (485)
.+..++.|+..|.+...|....-. ++..=...+.+|.+++|+.||+.++.|=.+|.|.+||+..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 345677777778777766532100 0111223457899999999999999999999999999999999
Q ss_pred EEEeccchhH
Q 011473 148 RRVYDESLEV 157 (485)
Q Consensus 148 ~~~~~~~~~~ 157 (485)
++.++++..+
T Consensus 165 l~~i~e~~ap 174 (1206)
T KOG2079|consen 165 LKVITEHGAP 174 (1206)
T ss_pred eeeeeecCCc
Confidence 9999775544
No 382
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.63 E-value=0.5 Score=50.43 Aligned_cols=103 Identities=13% Similarity=0.031 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCC-----CcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCC-CceeEEEEcCCCce
Q 011473 34 SSFVHIYDARADS-----NEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFP-ESEVSFRLKSDTNL 106 (485)
Q Consensus 34 d~~I~iwd~~~~~-----~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~-~~~~~~~~~~~~~l 106 (485)
++.|.+.|.+ + ...+..+.-- .....|+++|||++++.++ .+.++-+.|+++.+.. ... ++....+
T Consensus 295 gn~V~VID~~--t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~----~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGR--KAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK----IKPRDAV 367 (635)
T ss_pred CCEEEEEECC--ccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc----CCccceE
Confidence 4678888886 4 3445555433 3457899999999876655 5899999998774321 000 0000111
Q ss_pred E-EeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011473 107 F-EILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 107 ~-~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t 144 (485)
. +..- .......+|+++|..+.|--.|..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 1111 22356789999999888888999999999876
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.57 E-value=9.7 Score=42.51 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=62.7
Q ss_pred eCCCCeEEEEEcCCCCCcceEEEecCCC--------CeEEEEEcC----------------CCCEEEEEeCCCcEEEEcC
Q 011473 31 DRNSSFVHIYDARADSNEPLISKKVHMG--------PVKVMRYNP----------------VFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 31 ~s~d~~I~iwd~~~~~~~~~~~l~~h~~--------~V~~l~fsp----------------d~~~l~s~s~dg~i~~Wd~ 86 (485)
++.++.|.-.|.+ +++.+.++.-+.. ....+++.. .+..++.++.|+.+.-.|.
T Consensus 200 ~t~~~~V~ALDa~--TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA 277 (764)
T TIGR03074 200 CTPHNKVIALDAA--TGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDA 277 (764)
T ss_pred ECCCCeEEEEECC--CCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEEC
Confidence 3456777777876 7777777653211 112233321 2347777888998888898
Q ss_pred CCCCCCCceeEEEEcCCCce--EE-eecCCccEEEEEEcC--CCCEEEEEeC----------CCcEEEEECCCCcEEEEe
Q 011473 87 HTLQFPESEVSFRLKSDTNL--FE-ILKSKTTVSAIEVSP--DGKQFSITSP----------DRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l--~~-~~~~~~~v~~i~~sp--dg~~lat~s~----------D~~I~iwd~~tg~~~~~~ 151 (485)
+|++.. |++.....+ .. +......-..+.-+| .+..+++|+. ++.|+-+|.+||++++.+
T Consensus 278 ~TGk~~-----W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 278 DTGKLC-----EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred CCCCEE-----EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 887643 222211111 00 000000001112222 1335555543 688999999999999988
Q ss_pred c
Q 011473 152 D 152 (485)
Q Consensus 152 ~ 152 (485)
+
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.14 Score=56.76 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=65.0
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011473 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
.++.+++.|.|-..|+. ++-.+.+.=+.-.++|++++|+.+|..++.|-.+|.|.+||..+.+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~-~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~------------- 166 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMT-GNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK------------- 166 (1206)
T ss_pred eEEEEcCchhhhhhhhh-cccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-------------
Confidence 35555567778888875 1222223323446899999999999999999999999999998744433
Q ss_pred EEeecCCcc---EEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011473 107 FEILKSKTT---VSAIEVSPDGKQFSITSPDRRIRVFWF 142 (485)
Q Consensus 107 ~~~~~~~~~---v~~i~~spdg~~lat~s~D~~I~iwd~ 142 (485)
.+..|..+ |..+.+..++..+.++-.-|. +|..
T Consensus 167 -~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 167 -VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34444433 344445556666666555554 6654
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.19 E-value=1.1 Score=44.23 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred CcceEEEecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011473 47 NEPLISKKVHMGPVKVMRYNPVFDTVISADDK-GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 47 ~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d-g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
+..++-+..|-.--+.|+||||++.+.-++.. +.|.-++......... .......+....+..-.++...+|
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~-------~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG-------GRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC-------CcceEEEccCCCCCCCceEEeCCC
Confidence 44455555655566789999999877776654 5665554432111111 011122233345667788899999
Q ss_pred CEEEEEeCCC-cEEEEECCCCcEEEEec
Q 011473 126 KQFSITSPDR-RIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 126 ~~lat~s~D~-~I~iwd~~tg~~~~~~~ 152 (485)
.+.+++-.++ .|..|+.. |+++..+.
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEEE
Confidence 9987555554 89999988 99888773
No 386
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.17 E-value=0.13 Score=47.36 Aligned_cols=98 Identities=6% Similarity=-0.010 Sum_probs=52.9
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVM-RYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l-~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
++.|+.+|.|.+|.... .+........-..+|.+. .--.++.+..++..||.|+.|++.-.+...
T Consensus 73 ~~vG~~dg~v~~~n~n~-~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g------------- 138 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNL-EGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG------------- 138 (238)
T ss_pred EEeecccceEEEecCCc-cchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee-------------
Confidence 44455799999998752 222222222223333332 222345578888999999999876432211
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011473 107 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
.+....| -++..+++.+.|+.|.+|++.....+
T Consensus 139 --------~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~ 171 (238)
T KOG2444|consen 139 --------YVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVL 171 (238)
T ss_pred --------eeccccC-CCcceeEEecCCceEEeeccccchhh
Confidence 1222222 24455555566666666665555443
No 387
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.06 E-value=1.2 Score=45.50 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=63.1
Q ss_pred EeCCCCeEEEEEcCCCCCcceEEEecCCC-Ce-E-----EEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011473 30 SDRNSSFVHIYDARADSNEPLISKKVHMG-PV-K-----VMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 30 s~s~d~~I~iwd~~~~~~~~~~~l~~h~~-~V-~-----~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.++.++.+.-+|.+ +++.+.+.+.... .. . .+.-.| ++..+..++.++.+..+|.++++.. |+.
T Consensus 74 ~~~~~g~l~ald~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~-----W~~ 146 (394)
T PRK11138 74 AADRAGLVKALDAD--TGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA-----WQT 146 (394)
T ss_pred EECCCCeEEEEECC--CCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc-----ccc
Confidence 34467888888886 6777766542210 00 0 000011 3456667778899999999887642 433
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
+..... ...++ + .+..+..++.++.+.-+|.++|+.++.++
T Consensus 147 ~~~~~~-----~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 147 KVAGEA-----LSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cCCCce-----ecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 322111 01111 1 13456667889999999999999998874
No 388
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.86 E-value=2.1 Score=45.09 Aligned_cols=181 Identities=14% Similarity=0.142 Sum_probs=84.1
Q ss_pred CcceEEEEe---CCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011473 23 VKAGLAISD---RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 23 ~~~~l~vs~---s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.+++.+++. .......++|.+ +...+.+.........+.+.++|.+++..+ ..+...|.. |+ +.|.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~---G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~-----v~~~ 181 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNN---GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GK-----VIWE 181 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETT---S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--------EEEE
T ss_pred CCcEEEEeCCCCCCCceEEEECCC---ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CC-----EEEe
Confidence 456666666 345667777874 555565552222211166778998887666 666666663 11 1222
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCcEEEEecc--chhHHHhhhcC
Q 011473 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-------------DRRIRVFWFRTGKLRRVYDE--SLEVAQDLQRS 164 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-------------D~~I~iwd~~tg~~~~~~~~--~~~~i~~~~~~ 164 (485)
+....... .-| ..+..-|+|++|+.+.. .-.|..+| .+|+.++.++- ++..... .
T Consensus 182 ~~l~~~~~--~~H----HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~---~ 251 (477)
T PF05935_consen 182 YDLPGGYY--DFH----HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRD---T 251 (477)
T ss_dssp EE--TTEE---B-----S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT-----T
T ss_pred eecCCccc--ccc----cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccc---c
Confidence 22111110 112 24567899999988872 22477778 89999988743 2211110 0
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCC-CeEEEEcccCeEEEeecccC
Q 011473 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~ 232 (485)
........... + .-....=...+++.|++ ++.+|+++=.. .|-.+|..|+++..+++.+.
T Consensus 252 ~~~~~~~~~~~-~-------~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 252 VLKPYPYGDIS-G-------SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TGGT--SSSSS---------SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccccccccccc-c-------CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 00000000000 0 00001112357999999 55555555444 58888999999999998875
No 389
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.80 E-value=0.021 Score=59.60 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=71.1
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcC-CCC
Q 011473 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSP-HTL 89 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~-~t~ 89 (485)
.++||.. +.+++.+|.....++++|++. .+.....-.+..|..+...| .+.++++-+ ||.|.+||. ...
T Consensus 158 ns~cwlr-----d~klvlaGm~sr~~~ifdlRq---s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni 228 (783)
T KOG1008|consen 158 NSVCWLR-----DTKLVLAGMTSRSVHIFDLRQ---SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI 228 (783)
T ss_pred ccccccc-----Ccchhhcccccchhhhhhhhh---hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh
Confidence 4677762 556778887888999999972 22222223445566777888 778888877 999999994 222
Q ss_pred CCCCceeEEEEcCCCceEEeecC----CccEEEEEEcCCCC-EEEEEeC-CCcEEEEECC
Q 011473 90 QFPESEVSFRLKSDTNLFEILKS----KTTVSAIEVSPDGK-QFSITSP-DRRIRVFWFR 143 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~----~~~v~~i~~spdg~-~lat~s~-D~~I~iwd~~ 143 (485)
+ .++..+... ...+..++|+|... .+++.+. .++|+++|+.
T Consensus 229 e-------------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 229 E-------------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-------------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1 222222211 13489999999543 4556565 4689999986
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.74 E-value=5.2 Score=38.62 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=57.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-----------------------------eeEEEEcCCC
Q 011473 54 KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-----------------------------EVSFRLKSDT 104 (485)
Q Consensus 54 ~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~-----------------------------~~~~~~~~~~ 104 (485)
.|-...|.++.|+|+.++|.+......-.+|=..+|++.+. .+.|.+..++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 35555699999999999998888777777773333333211 2234443333
Q ss_pred ceEEe----------ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 105 NLFEI----------LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 105 ~l~~~----------~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
.+..+ .+.....-.+||+|..+.|..+=.-.-++||.+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 22211 1213446789999988888887777777777665
No 391
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.60 E-value=0.34 Score=41.77 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhhh------cCccCCceEEEEEeC
Q 011473 339 GDIHMKLYPEECPKTVENFTTHCR------NEYYNNLIFHRVIKG 377 (485)
Q Consensus 339 G~i~i~L~~~~aP~~~~nF~~l~~------~~~y~g~~f~rv~~~ 377 (485)
-.++.+|..|.||+||+.|.++-- +..|.|-.++--++.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP~~~~~~HarwSG~ei~~~l~~ 52 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALPLKGKVIHARWSGEEIWIPLPD 52 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--EEEE-EE-SSSSSEEEEEEE-
T ss_pred eEEEEEEcccCChHHHHHHHHhCCCCCcEEEEEEECcEEEEECCC
Confidence 468999999999999999998862 223555544444443
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.59 E-value=0.23 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011473 57 MGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 57 ~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
...|.+++|+|..++||.++.||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999876
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.54 E-value=7.3 Score=37.38 Aligned_cols=162 Identities=15% Similarity=0.258 Sum_probs=90.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
...++++ .++| +.+|+.. ....+.+.. +..+|..+...|+-+.++.-+ |+.+.++++.........-.......
T Consensus 7 ~~~L~vG-t~~G-l~~~~~~-~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 7 GDRLLVG-TEDG-LYVYDLS-DPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCEEEEE-ECCC-EEEEEec-CCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3445555 5677 9999983 123333333 334599999999888777765 49999998876443321000000000
Q ss_pred Cc-eEEeecCCccEEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeccchhHHHhhhcCCCccccccccc
Q 011473 104 TN-LFEILKSKTTVSAIE--VSPDGKQFSITSPDRRIRVFWFRTG-----KLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 104 ~~-l~~~~~~~~~v~~i~--~spdg~~lat~s~D~~I~iwd~~tg-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
.. ...+ .....+...+ =.+.+...+.....++|.+|..... +..+.+.
T Consensus 81 ~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----------------------- 136 (275)
T PF00780_consen 81 RSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----------------------- 136 (275)
T ss_pred ccccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-----------------------
Confidence 00 0001 1112233333 2234444444555668888877653 2222221
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeeccc
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~ 231 (485)
- .....+++|. ++.|+.+...+..+.|+.+++....+...
T Consensus 137 ------------l--p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 137 ------------L--PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPS 176 (275)
T ss_pred ------------c--CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCcc
Confidence 0 1223577887 77889998889999999988876665433
No 394
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.54 E-value=4.7 Score=37.21 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=72.0
Q ss_pred ecCCCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---C---
Q 011473 6 RLPFIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---G--- 79 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g--- 79 (485)
..+..|..+|.. ....+++++ ..+.|.+|++..+..+++.+|..- +.|..+.++..|++|+|--.+ .
T Consensus 15 ~~~~EP~~~c~~-----g~d~Lfva~-~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~ 87 (215)
T PF14761_consen 15 PCEQEPTAVCCG-----GPDALFVAA-SGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVD 87 (215)
T ss_pred ccccCcceeecc-----CCceEEEEc-CCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccce
Confidence 334556655442 223344433 357899999974455677787644 789999999999999997543 2
Q ss_pred cEEEE---cCC-CCCCCCc--eeEEE--------EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011473 80 IIEYW---SPH-TLQFPES--EVSFR--------LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 80 ~i~~W---d~~-t~~~~~~--~~~~~--------~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t 144 (485)
.+|++ +.. ....+-. ..... .+.+-.+.++.- ...+.+++-.|-.--|+.|+ ++++.||.+..
T Consensus 88 fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 88 FVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 56664 221 1111100 00000 000111222222 34577888888444445544 66799997754
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.31 E-value=1.2 Score=47.98 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=62.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe------CCCcEEEE--cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011473 55 VHMGPVKVMRYNPVFDTVISAD------DKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s------~dg~i~~W--d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
+....+.+.++||||+.++..- .|..-.|| +... .. ..+.... ....-.|||||+
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg---------------~~-~~lt~g~-~~t~PsWspDG~ 409 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG---------------VA-VQVLEGH-SLTRPSWSLDAD 409 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC---------------cc-eeeecCC-CCCCceECCCCC
Confidence 3334678999999999876654 34444566 4311 11 1121112 256778999999
Q ss_pred EEEEEeCC-CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCE
Q 011473 127 QFSITSPD-RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 205 (485)
Q Consensus 127 ~lat~s~D-~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~ 205 (485)
.+++.+.. ..+++.+-.....+..++- +. | +........+.++.|||||+.
T Consensus 410 ~lw~v~dg~~~~~v~~~~~~gql~~~~v------------------d~---g-------e~~~~~~g~Issl~wSpDG~R 461 (591)
T PRK13616 410 AVWVVVDGNTVVRVIRDPATGQLARTPV------------------DA---S-------AVASRVPGPISELQLSRDGVR 461 (591)
T ss_pred ceEEEecCcceEEEeccCCCceEEEEec------------------cC---c-------hhhhccCCCcCeEEECCCCCE
Confidence 98887643 3445544322222222210 00 0 000011234679999999999
Q ss_pred EEEecC
Q 011473 206 LIYATL 211 (485)
Q Consensus 206 l~~~s~ 211 (485)
|+.-..
T Consensus 462 iA~i~~ 467 (591)
T PRK13616 462 AAMIIG 467 (591)
T ss_pred EEEEEC
Confidence 888654
No 396
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.21 E-value=0.59 Score=47.17 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=48.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCCCcccccccccccch-hhhhHhhhccC
Q 011473 113 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAIDFGRR-MAVEKEIEKTE 190 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~i~~~~ 190 (485)
...+....|||||+.+|-.. ++.|.+++..+++..+.- ++ .. .++ .|.. ...|.|+-.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~----------~i~------nG~~dwvyeEEv~~-- 101 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EP----------GIY------NGVPDWVYEEEVFD-- 101 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TT----------TEE------ESB--HHHHHHTSS--
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ce----------eEE------cCccceeccccccc--
Confidence 45577889999999988765 788999999888655422 22 00 000 0110 112223111
Q ss_pred CCCCceEEECCCCCEEEEecCC--CeEEEE
Q 011473 191 TAPPSNAIFDESSNFLIYATLL--GIKIVN 218 (485)
Q Consensus 191 ~~~~~~i~fd~~g~~l~~~s~~--~i~v~d 218 (485)
....+-|||||++|++...+ .++.+.
T Consensus 102 --~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 102 --RRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp --SSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred --cccceEECCCCCEEEEEEECCcCCceEE
Confidence 12478899999999998764 255444
No 397
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.77 E-value=6.8 Score=39.69 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCcceEEEEeC-----------CCC-eEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 011473 22 DVKAGLAISDR-----------NSS-FVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 22 ~~~~~l~vs~s-----------~d~-~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~ 87 (485)
++++.+.|+.. ..+ .|.+++-..+.+. ....+...-...+.+++.+++ ++++ +.....++.|..
T Consensus 22 d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~ 99 (367)
T TIGR02604 22 DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDILFLRDKD 99 (367)
T ss_pred CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEEEEeCCC
Confidence 56777877753 223 6777754322333 233444334456889999998 6555 444444455554
Q ss_pred CCCCCC-ceeEEEEcCCCceE-Eeec----CCccEEEEEEcCCCCEEEEEe
Q 011473 88 TLQFPE-SEVSFRLKSDTNLF-EILK----SKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 88 t~~~~~-~~~~~~~~~~~~l~-~~~~----~~~~v~~i~~spdg~~lat~s 132 (485)
...... . .+.+. .+.. +......++|.|||++.++-+
T Consensus 100 gdg~ad~~--------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 100 GDDKADGE--------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CCCCCCCc--------cEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 211111 1 01111 1211 234477899999998776655
No 398
>PRK00969 hypothetical protein; Provisional
Probab=92.73 E-value=0.98 Score=46.57 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccC
Q 011473 328 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
......+.|+.|.|+|+|. .++..+..|...++. |.|...+=--+ .-+..|-.. ..++... ..
T Consensus 49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~-~~vAfGp~~-----------s~l~p~~-~~ 111 (508)
T PRK00969 49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSR-SAVAFGPFE-----------SDLEPSR-EE 111 (508)
T ss_pred ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccc-cceeEcccc-----------cCccccc-Cc
Confidence 5678899999999999999 455666666665443 33443332222 223333221 1122111 11
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCC---CCCCCcEEEEEEcCHHHHHHHhcC
Q 011473 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPW---LDNKHTVFGRVIKGMDVVQAIEKV 463 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~---ld~~~~vfG~V~~G~~vl~~i~~~ 463 (485)
.. -.++-|.+.-+|-+...+.+.|...+... +... -+||+|+.|..+|+++..-
T Consensus 112 ~~-y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~-gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 112 YE-YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPND-GVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred ce-eecccEEEEccCCCCCCceEEEEecchhhhhCCCCC-CceEEEccchhhHhhccCC
Confidence 12 23477888777766666666666554321 1122 7999999999999998764
No 399
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.26 Score=48.66 Aligned_cols=100 Identities=20% Similarity=0.355 Sum_probs=62.8
Q ss_pred EEEEEecCCCChHHHHHHHHhhhcCccCCceEEEE--EeCcEEEecCCCCCCCCCcccCCCccccccccCCCCCCceEEE
Q 011473 340 DIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRV--IKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVS 417 (485)
Q Consensus 340 ~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv--~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~ 417 (485)
.+.++|.+. +|+++++|+.|.+.|-+ || ..+-++. ..+....+.+.|+ .. -..+|.+.
T Consensus 204 y~eve~s~n-sP~saEH~lalmedG~l------ri~~~tntfis----------~~~lq~~~~~~en-~d--~RerG~iT 263 (512)
T COG4070 204 YFEVELSRN-SPKSAEHFLALMEDGTL------RIDVTTNTFIS----------DDTLQEEKVPEEN-FD--LRERGAIT 263 (512)
T ss_pred EEEEEeCCC-CchhHHHHHHHhhcceE------EEEEeccceee----------ccccccccCChhh-hh--hhhcceEE
Confidence 478888876 99999999999988742 22 1111111 1112223344443 22 23568999
Q ss_pred EcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhc
Q 011473 418 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEK 462 (485)
Q Consensus 418 ~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~ 462 (485)
..+.|-+. -.-||.-.+.+ ---.|.+.|||++||++++--+.
T Consensus 264 vRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 264 VRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 98876442 35777665544 23458999999999999875443
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.59 E-value=3 Score=39.73 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=62.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCc----ceEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNE----PLISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~----~~~~l~-----~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
++.++++.-.++.+.++++...+.. ....+. .+...+..|+|+|.++.|+.+-...-.+++......-...
T Consensus 75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 4567777666889999988421211 112222 3556799999999888777666555555653322110000
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
..... ...+.........+.+++++|. |++++....++.|-.+| .+|+.+..+
T Consensus 155 ~~~~~---~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 155 LFVSD---DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp -EEEE----HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred eeecc---ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 00000 0000001112244789999995 55666667788999999 788887665
No 401
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.50 E-value=3.8 Score=44.35 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCEEEEEeCC-CcEEEEcCC-CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcE
Q 011473 60 VKVMRYNPVFDTVISADDK-GIIEYWSPH-TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 137 (485)
Q Consensus 60 V~~l~fspd~~~l~s~s~d-g~i~~Wd~~-t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I 137 (485)
.+.-.|+|||+.+.+.+.. ..+++.+.. ++++ +...+..+ .+.. .....|.++.|||||+++|... ++.|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql----~~~~vd~g-e~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v 470 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL----ARTPVDAS-AVAS--RVPGPISELQLSRDGVRAAMII-GGKV 470 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE----EEEeccCc-hhhh--ccCCCcCeEEECCCCCEEEEEE-CCEE
Confidence 6778999999988877643 233333221 1110 00111111 1111 2245699999999999998766 4555
Q ss_pred EE
Q 011473 138 RV 139 (485)
Q Consensus 138 ~i 139 (485)
.+
T Consensus 471 ~V 472 (591)
T PRK13616 471 YL 472 (591)
T ss_pred EE
Confidence 55
No 402
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=6.6 Score=40.79 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC----CC--CCceeEEE-EcCCCceEEeecCCccEEEEEEcCCC---CEE
Q 011473 59 PVKVMRYNPVFDTVISADDKGIIEYWSPHTL----QF--PESEVSFR-LKSDTNLFEILKSKTTVSAIEVSPDG---KQF 128 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~----~~--~~~~~~~~-~~~~~~l~~~~~~~~~v~~i~~spdg---~~l 128 (485)
.|..+..|+.|..++-++.+|.+-+.=.+.+ .+ .+..+.++ +..++.++.-. ..-.+..++|+|++ .+|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceE
Confidence 4566788999999999999997765321110 01 11112222 12233443322 22346778999986 678
Q ss_pred EEEeCCCcEEEEECCCCcEEEE
Q 011473 129 SITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 129 at~s~D~~I~iwd~~tg~~~~~ 150 (485)
..-+.|..||+||...-..++.
T Consensus 184 ~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEEecCcEEEEEecCCcchhhc
Confidence 8889999999999987665543
No 403
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=14 Score=37.71 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=100.3
Q ss_pred eEEEEeC--CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeEEEEcC
Q 011473 26 GLAISDR--NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 26 ~l~vs~s--~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.++.. .+++|.+.|.. +.....+...-..+ ..++++|+++.+..+. .++.|.+.|..+....+
T Consensus 129 ~vYV~n~~~~~~~vsvid~~--t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--------- 196 (381)
T COG3391 129 YVYVANAGNGNNTVSVIDAA--TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--------- 196 (381)
T ss_pred EEEEEecccCCceEEEEeCC--CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---------
Confidence 4555554 36778887775 66667665543345 8899999999665554 77899888865532210
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEE-eccchhHHHhhhcCCCcccccccccccc
Q 011473 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPD---RRIRVFWFRTGKLRRV-YDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D---~~I~iwd~~tg~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.+... ...-......++++|||.++...... +.+...|..++..... +..
T Consensus 197 ~~~~~-~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~------------------------- 250 (381)
T COG3391 197 GSVGS-LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV------------------------- 250 (381)
T ss_pred ccccc-ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-------------------------
Confidence 00000 01111234678999999976655543 5899999998887654 100
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeeccc
Q 011473 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~~ 231 (485)
... ....+.++|+|+++-.... ..+.+.|..+.++...+...
T Consensus 251 ----------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 251 ----------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ----------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 000 1236789999998777644 34899999998887766443
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.30 E-value=11 Score=36.39 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=44.1
Q ss_pred CCcceEEEEeCC-----CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 22 DVKAGLAISDRN-----SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW 84 (485)
Q Consensus 22 ~~~~~l~vs~s~-----d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W 84 (485)
++++.+|-..-+ -|.|-|||.+ ...+.+.++..|.-.-..+.+.+||++++.+. |-|+.-
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 566666554433 3789999997 34566777888887888999999999988774 556654
No 405
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.15 E-value=1.4 Score=48.69 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCCcceEE-Ee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEe
Q 011473 33 NSSFVHIYDARADSNEPLIS-KK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI 109 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~-l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~ 109 (485)
+++.+..||.+-...+++.. .+ ......+|++=+.+| .||.||.+|.||++|-- ++-. . -.|
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~A----------K---T~l 614 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRA----------K---TAL 614 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhh----------h---hcC
Confidence 57789999998422233321 11 233455666665555 68999999999999842 2111 1 114
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 110 LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
.+-..+|.+|..+.||++++..| +..+-|+++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 55568899999999999987655 6678888863
No 406
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.04 E-value=12 Score=38.45 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC------Cc--------------eeEEEEc--CC-------CceEEe
Q 011473 59 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP------ES--------------EVSFRLK--SD-------TNLFEI 109 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~------~~--------------~~~~~~~--~~-------~~l~~~ 109 (485)
.|+++.|+++..-|+.+-..|.|-+|-....+.. .. ...-+.. .. .++..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999988722111100 00 0000000 00 122334
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011473 110 LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
...+++|++++.|.= -++|.|..+|.+.|.|++...++..
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEee
Confidence 445789999999844 4899999999999999988888765
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.90 E-value=0.41 Score=44.22 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=45.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011473 69 FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 69 ~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
+..++.+..+|.|.+|...-+.... +++ ..+.......+.--.++.+..+++.|+.||.|+++-++.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~-----------d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS-----------DRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHH-----------Hhh-hcccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 4578888899999999764211000 000 0111122334445557778999999999999999988876
Q ss_pred EEe
Q 011473 149 RVY 151 (485)
Q Consensus 149 ~~~ 151 (485)
...
T Consensus 138 g~~ 140 (238)
T KOG2444|consen 138 GYV 140 (238)
T ss_pred eee
Confidence 443
No 408
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.44 E-value=2.1 Score=44.08 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=45.1
Q ss_pred CeEEEEEcCCCCEEE-EEeCCC----cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011473 59 PVKVMRYNPVFDTVI-SADDKG----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 59 ~V~~l~fspd~~~l~-s~s~dg----~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
.+...++|||++++| +.+..| .+++.|+++++.... .+... ....++|++||+.|.-...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------------~i~~~--~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------------GIENP--KFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------------EEEEE--ESEEEEECTTSSEEEEEEC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------------ccccc--ccceEEEeCCCCEEEEEEe
Confidence 344678999999776 445544 488889988643321 01111 1123899999988766654
Q ss_pred CC-----------cEEEEECCCCc
Q 011473 134 DR-----------RIRVFWFRTGK 146 (485)
Q Consensus 134 D~-----------~I~iwd~~tg~ 146 (485)
|. .|+.|.+.++.
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~ 213 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQ 213 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-G
T ss_pred CcccccccCCCCcEEEEEECCCCh
Confidence 33 36777776553
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.31 E-value=10 Score=36.34 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=65.4
Q ss_pred CCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011473 32 RNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 32 s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
-.++...+||.+ +.+++.++.-. +.=+.++ .|++.|+..+....+..+|+++++..+..-+. ..+.++
T Consensus 107 Wk~~~~f~yd~~--tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~pv----- 174 (264)
T PF05096_consen 107 WKEGTGFVYDPN--TLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRPV----- 174 (264)
T ss_dssp SSSSEEEEEETT--TTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE------
T ss_pred ecCCeEEEEccc--cceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEEC-----
Confidence 357889999987 77788887633 2335665 56676777676778999999987654431110 001111
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 112 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
..++.+.+- +|...|=.-....|-.-|..||+++..++-
T Consensus 175 --~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 175 --SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp ----EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred --CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 123445554 777777777777888999999999988864
No 410
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=91.26 E-value=2.6 Score=43.48 Aligned_cols=120 Identities=11% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccc
Q 011473 326 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 326 ~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 405 (485)
........+.|+.|.|+|+|-. +..+++.|.+.++. |-|...+=.-+ .-+..|-.. ..++...
T Consensus 43 ~e~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~-~~vAfGp~~-----------sdl~p~~- 105 (503)
T TIGR03268 43 ERETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTP-QEVAFGPFP-----------SDLEPSR- 105 (503)
T ss_pred hcccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecch-hheeeCccc-----------CCccccC-
Confidence 3456788999999999999994 56677777665543 23333322211 222222211 1111111
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCC--C-CCCCCcEEEEEEcCHHHHHHHhcC
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATP--W-LDNKHTVFGRVIKGMDVVQAIEKV 463 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~--~-ld~~~~vfG~V~~G~~vl~~i~~~ 463 (485)
.-..-.+|-|.+.-+|-+...+.+.|.-.+.. + +....-+||+|+.|..+|+++..-
T Consensus 106 -~~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~ 165 (503)
T TIGR03268 106 -EPSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG 165 (503)
T ss_pred -CcceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence 11122447788888887766777777665543 1 222568999999999999988763
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.08 E-value=5.4 Score=38.14 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEE-cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC---C
Q 011473 59 PVKVMRYNPVFDTVISADDKGIIEYW-SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP---D 134 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s~dg~i~~W-d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~---D 134 (485)
.++.-.|++++...+....+...+++ +..++..... ......-...|.++.+||||.++|.... +
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~-----------~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~ 135 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV-----------EVDWPGLRGRITALRVSPDGTRVAVVVEDGGG 135 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE-----------EecccccCCceEEEEECCCCcEEEEEEecCCC
Confidence 67778999998877776767777776 3322221110 0001111117999999999999988773 3
Q ss_pred CcEEEEE
Q 011473 135 RRIRVFW 141 (485)
Q Consensus 135 ~~I~iwd 141 (485)
+.|.|=-
T Consensus 136 ~~v~va~ 142 (253)
T PF10647_consen 136 GRVYVAG 142 (253)
T ss_pred CeEEEEE
Confidence 5555543
No 412
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.69 E-value=16 Score=34.81 Aligned_cols=61 Identities=7% Similarity=-0.062 Sum_probs=41.3
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011473 28 AISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
+|-|...+.+++-+.+ ++.....+..-..-=......+++.++-.++.|++....|..++.
T Consensus 66 VV~GCy~g~lYfl~~~--tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVK--TGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EEEEEccCcEEEEEec--chhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 4444467788888887 676666665321111123356789999999999999998987743
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.68 E-value=1.1 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=25.3
Q ss_pred cEEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 011473 115 TVSAIEVSPDGK---QFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 115 ~v~~i~~spdg~---~lat~s~D~~I~iwd~~tg 145 (485)
.+.++.|||+.. +||.+-.-+.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999998554 7777777889999999964
No 414
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.12 E-value=23 Score=35.89 Aligned_cols=207 Identities=18% Similarity=0.247 Sum_probs=95.1
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEc----CCCCE--EEEE-eCC---CcEEE
Q 011473 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN----PVFDT--VISA-DDK---GIIEY 83 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fs----pd~~~--l~s~-s~d---g~i~~ 83 (485)
.-|++.. +|...++++...++-+.+||+. ++.++.+.. +..+.|..- -.++. |+.+ ..+ ..|++
T Consensus 58 AIWvnp~-dp~kSlIigTdK~~GL~VYdL~---Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 58 AIWVNPA-DPAKSLIIGTDKKGGLYVYDLD---GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp EEE--SS--GGG-EEEEEETTTEEEEEETT---S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred cEecCCC-CcccceEEEEeCCCCEEEEcCC---CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 4577654 4455555555577889999995 677777752 233333221 13432 3333 333 46899
Q ss_pred E--cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEE--cC-CCCEE-EEEeCCCcEEEEECC---CCc----EEEE
Q 011473 84 W--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV--SP-DGKQF-SITSPDRRIRVFWFR---TGK----LRRV 150 (485)
Q Consensus 84 W--d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~--sp-dg~~l-at~s~D~~I~iwd~~---tg~----~~~~ 150 (485)
| |..++.+..- -....+ +......+..+|+ +| +|.+. .....+|.+..|-+. .|+ ++|.
T Consensus 132 f~id~~~g~L~~v-----~~~~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~ 203 (381)
T PF02333_consen 132 FRIDPDTGELTDV-----TDPAAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE 203 (381)
T ss_dssp EEEETTTTEEEE------CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE
T ss_pred EEecCCCCcceEc-----CCCCcc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE
Confidence 8 4333221000 000001 1112233566665 54 56644 445678877777553 343 3444
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEccc-----CeE
Q 011473 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHT-----NKV 224 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~t-----g~~ 224 (485)
|.- ....-.++.|..-.+|-++-.+ ||-.++... +++
T Consensus 204 f~~-------------------------------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~ 246 (381)
T PF02333_consen 204 FKV-------------------------------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTL 246 (381)
T ss_dssp EE--------------------------------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EE
T ss_pred ecC-------------------------------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCccee
Confidence 421 0012366676666666666554 466666542 222
Q ss_pred EEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011473 225 SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 225 v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+....+..-....==+++|.. ...++-||+|.=+++++-+|.++.+.
T Consensus 247 v~~~~g~~l~aDvEGlaly~~----------------------~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 247 VASADGDGLVADVEGLALYYG----------------------SDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEBSSSSB-S-EEEEEEEE-----------------------CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred eecccccccccCccceEEEec----------------------CCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 222211100000001222221 12457899999999999999887653
No 415
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.98 E-value=0.94 Score=45.66 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc----CCCceEEe
Q 011473 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK----SDTNLFEI 109 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~----~~~~l~~~ 109 (485)
.+.+.|||++ +++ +..+......+....|||+|+.++-.. ++.|.+++..+++..+ ++++-. .+..-...
T Consensus 22 ~~~y~i~d~~--~~~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~--lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIE--TGE-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ--LTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETT--TTE-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE--SES--TTTEEESB--HHH
T ss_pred ceeEEEEecC--CCc-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE--eccccceeEEcCccceec
Confidence 4678999997 432 333333356788999999999988876 5788888776542111 111100 00000000
Q ss_pred ecC-CccEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 011473 110 LKS-KTTVSAIEVSPDGKQFSITSP-DRRIRVFW 141 (485)
Q Consensus 110 ~~~-~~~v~~i~~spdg~~lat~s~-D~~I~iwd 141 (485)
+.. -..-..+-|||||++||.... +..|+.+.
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 000 111245789999999999875 44555554
No 416
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.65 E-value=1.6 Score=46.62 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=82.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011473 56 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 56 h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
|...|.--+++..+++++-|+.-|.+.+++-..++... +...+....+..+++|++..++|.|+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-------------~~~~~~~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-------------LKNEGATGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-------------ccccCccceEEEEEecchhHhhhhhcCCc
Confidence 55566666677888999999999999988766543221 11223445677889999999999999999
Q ss_pred cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-e
Q 011473 136 RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-I 214 (485)
Q Consensus 136 ~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i 214 (485)
.|.++-+..+..- .. +| + ....+.....+++++||++|..+-+|-..| |
T Consensus 99 ~V~v~ql~~~~p~-~~----------------~~-~------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 99 RVSVFQLNKELPR-DL----------------DY-V------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred eEEeehhhccCCC-cc----------------ee-e------------ccccccCCceEEEEEecccccEEeecCCCceE
Confidence 9999977652210 00 00 0 001112344567999999999999998877 5
Q ss_pred EEEEccc
Q 011473 215 KIVNLHT 221 (485)
Q Consensus 215 ~v~d~~t 221 (485)
.+..+.+
T Consensus 149 ~~~~L~s 155 (726)
T KOG3621|consen 149 VLTELDS 155 (726)
T ss_pred EEEEech
Confidence 5544433
No 417
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.14 E-value=21 Score=34.09 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=63.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH--H-H-hhhcCCCcccccccc--------------c
Q 011473 114 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV--A-Q-DLQRSDAPLYRLEAI--------------D 175 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~--i-~-~~~~~~~~~~~~~~~--------------~ 175 (485)
..+.+++|. ++.++.|..+ ...+.|+.++.....++..... + . .....+..+..+.+. .
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~ 215 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNK 215 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcC
Confidence 568889998 6677776644 4889999988775554222111 0 0 001111222222211 0
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCcccee
Q 011473 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFL 238 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~ 238 (485)
.|.+.. ...+ .-.....++++. ..||+.-+.++|.||++.+|++++++.... .|++
T Consensus 216 ~G~~~r-~~~i--~W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~--~~~l 271 (275)
T PF00780_consen 216 NGEPSR-KSTI--QWSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPN--IRLL 271 (275)
T ss_pred CCCcCc-ccEE--EcCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCC--EEEE
Confidence 111111 0000 011122466663 458888888889999999999999998654 4533
No 418
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.14 E-value=6.7 Score=39.61 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCcceEEEecCC--CCeEEEEEcCCCCEEEEEe--C---CCcEEEEcCCCCCCCCceeEEEEcCCCceEEe
Q 011473 37 VHIYDARADSNEPLISKKVHM--GPVKVMRYNPVFDTVISAD--D---KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI 109 (485)
Q Consensus 37 I~iwd~~~~~~~~~~~l~~h~--~~V~~l~fspd~~~l~s~s--~---dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~ 109 (485)
-|||-++. .+...+.+..|. ..+..=-|.|||..|.=-+ . +..|.-.|+.+++. +.+..+
T Consensus 216 ~RiW~i~~-dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~------------~~~~~~ 282 (386)
T PF14583_consen 216 QRIWTINT-DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER------------RRLMEM 282 (386)
T ss_dssp -SEEEEET-TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E------------EEEEEE
T ss_pred eEEEEEEc-CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc------------eEEEeC
Confidence 47887652 333344444332 3445556899998654322 2 22333336655321 112222
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCC----------------cEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011473 110 LKSKTTVSAIEVSPDGKQFSITSPDR----------------RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~----------------~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
......--|+||++||-=+.|. .|+++++++++.. .+..|......
T Consensus 283 ----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v------------- 344 (386)
T PF14583_consen 283 ----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKV------------- 344 (386)
T ss_dssp -----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE--------------------
T ss_pred ----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCccee-------------
Confidence 1245666789999987655543 4556666665542 22222111110
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 212 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~ 212 (485)
+..+....=....|+|||+++++.|+.
T Consensus 345 ------------~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 345 ------------LDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp ------------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred ------------ecCCCccCCCCCccCCCCCEEEEECCC
Confidence 000111111477999999999999874
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.13 E-value=0.45 Score=51.94 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=56.0
Q ss_pred CeEEEEEcCCCCCcceEE-----EecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011473 35 SFVHIYDARADSNEPLIS-----KKVHMGPVKVMRYNP---VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~-----l~~h~~~V~~l~fsp---d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
|...+||+.--.++.... ......++.-|.|.| ..-++..+..++.|++....+-. .
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-------------~-- 217 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-------------R-- 217 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-------------H--
Confidence 567889875222332222 223344556666665 44566777788888875432210 0
Q ss_pred EEeecCCccEEEE-----------EEcCCCCEEEEEeCCCcEEEEECC
Q 011473 107 FEILKSKTTVSAI-----------EVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 107 ~~~~~~~~~v~~i-----------~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
.-+++|...+..+ .+||||+.||.++.||.++.|-+.
T Consensus 218 ~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 218 SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 1133344333332 379999999999999999999753
No 420
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.93 E-value=3.7 Score=42.16 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=36.5
Q ss_pred eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 109 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
+...+..+.+|+.+|++++.|+.-.=|.|.|+|+.++..++.+.+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 334456688999999999888876678999999999999887743
No 421
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.85 E-value=21 Score=35.14 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=72.3
Q ss_pred CCCcEEEEECCCCcEEEEecc--chhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec
Q 011473 133 PDRRIRVFWFRTGKLRRVYDE--SLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 210 (485)
Q Consensus 133 ~D~~I~iwd~~tg~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s 210 (485)
.|..+.--|+.||+++..+.. |+...... .... .+. ..+. ..-..-....+++|..+++|.||+++-
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~-~~~~---~~~--~~g~-----~~~~~~D~~HiNsV~~~~~G~yLiS~R 162 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSY-DSQD---PLP--GSGG-----SSSFPWDYFHINSVDKDDDGDYLISSR 162 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccc-cccc---ccc--CCCc-----CCCCCCCccEeeeeeecCCccEEEEec
Confidence 367788889999999887732 22111000 0000 000 0000 000011223457899999999999987
Q ss_pred CCC-eEEEEcccCeEEEeecccCCc-cceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011473 211 LLG-IKIVNLHTNKVSRILGKVENN-DRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 211 ~~~-i~v~d~~tg~~v~~~~~~~~~-~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
... |-++|-.||+++..+++...+ ... .-..|.. .=|+.++-.+-++++|-||+
T Consensus 163 ~~~~i~~I~~~tG~I~W~lgG~~~~df~~-~~~~f~~-----------------------QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 163 NTSTIYKIDPSTGKIIWRLGGKRNSDFTL-PATNFSW-----------------------QHDARFLNESNDDGTISLFD 218 (299)
T ss_pred ccCEEEEEECCCCcEEEEeCCCCCCcccc-cCCcEee-----------------------ccCCEEeccCCCCCEEEEEc
Confidence 754 999999999999999887311 111 1111211 24666666677888999998
Q ss_pred cC
Q 011473 289 RR 290 (485)
Q Consensus 289 ~~ 290 (485)
+.
T Consensus 219 N~ 220 (299)
T PF14269_consen 219 NA 220 (299)
T ss_pred CC
Confidence 83
No 422
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.58 E-value=3.1 Score=38.77 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=61.7
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEc--CCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcE
Q 011473 61 KVMRYNPVFDTV-ISADDKGIIEYWS--PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 137 (485)
Q Consensus 61 ~~l~fspd~~~l-~s~s~dg~i~~Wd--~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I 137 (485)
+.++|+.|.+.+ ..-+.+-.|.-|| ..++.+......|+++..++...+ ..-.+++.-+|..+++.-.-++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-----~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-----EPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-----CCCcceEccCCcEEEEEecCcEE
Confidence 467888877754 4556777888886 777777665556665543222221 23445667789998888889999
Q ss_pred EEEECCCCcEEEEec
Q 011473 138 RVFWFRTGKLRRVYD 152 (485)
Q Consensus 138 ~iwd~~tg~~~~~~~ 152 (485)
.-.|+.|||++.++.
T Consensus 236 ~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIK 250 (310)
T ss_pred EEECCCCCcEEEEEE
Confidence 999999999998874
No 423
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=88.40 E-value=0.16 Score=44.20 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=66.8
Q ss_pred EEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCC----------C---EEEEEe
Q 011473 275 LCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLP----------D---NVILHT 336 (485)
Q Consensus 275 ~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~----------~---~~~~~t 336 (485)
|-|..++-.|-||...+|++.+| .++++++|+.++ ...++.++. +++...+.. + ....+.
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~--Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~ 79 (146)
T cd01922 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQG--GDPTGTGRGGASIYGKKFEDEIHPELKHT 79 (146)
T ss_pred eEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEe--cccCCCCCCcccccCCCcccccccCcCCC
Confidence 56778899999999999999998 778999999987 344566665 332211110 1 112334
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011473 337 TMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 337 ~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
..|.|-+--.+ .-..+++-|+.+....++|+ +.|-||+.|+
T Consensus 80 ~~G~l~ma~~~-~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~ 122 (146)
T cd01922 80 GAGILSMANAG-PNTNGSQFFITLAPTPWLDGKHTIFGRVSKGM 122 (146)
T ss_pred CCeEEEEeeCC-CCCCccEEEEEcCCCcccCCCCCEEEEEEcCH
Confidence 46777765433 22345667777777777665 6888888764
No 424
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=87.86 E-value=11 Score=37.16 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=61.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC--CCeEEEEEcCCCCEEEEEeCCCcEEEE--cCCCCCCCCceeEEE
Q 011473 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM--GPVKVMRYNPVFDTVISADDKGIIEYW--SPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~--~~V~~l~fspd~~~l~s~s~dg~i~~W--d~~t~~~~~~~~~~~ 99 (485)
.++++++. .+.|++|++. ..+.+.....+. ..|+++... +++++.++....+.++ +.+.
T Consensus 98 ~~~lv~~~--g~~l~v~~l~--~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~----------- 160 (321)
T PF03178_consen 98 NGRLVVAV--GNKLYVYDLD--NSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN----------- 160 (321)
T ss_dssp TTEEEEEE--TTEEEEEEEE--TTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT-----------
T ss_pred CCEEEEee--cCEEEEEEcc--CcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC-----------
Confidence 45566665 4889999997 333122222222 255555554 5688999887777765 3321
Q ss_pred EcCCCceEEeec--CCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 100 LKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 100 ~~~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
..+..+.+ ....++++.|-+|+..++.+..++.+.++...
T Consensus 161 ----~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 ----NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ----E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ----CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 11222322 34558889998777888999999999999764
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.77 E-value=1.5 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEcCCC
Q 011473 58 GPVKVMRYNPVF---DTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 58 ~~V~~l~fspd~---~~l~s~s~dg~i~~Wd~~t 88 (485)
+.|.+++|||.. ++|+-+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999974
No 426
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=87.55 E-value=0.26 Score=43.67 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=67.0
Q ss_pred EEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCC----------CE---EEEE
Q 011473 274 LLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLP----------DN---VILH 335 (485)
Q Consensus 274 l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~----------~~---~~~~ 335 (485)
+|.|..++-.|-||...+|++.+| .++++++|+.++ ...++.++. +++...+.+ +. ...+
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~--Gd~~~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 3 RLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQG--GDPTGTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEe--cccCCCCCCCccccCCccCcccccCcCc
Confidence 577899999999999999999998 778899999987 344556655 332221111 11 1224
Q ss_pred eCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011473 336 TTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 336 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
...|.|-+--.+. --.+.+-|+.+....++|| +.|-||+.|+
T Consensus 81 ~~~G~v~ma~~~~-~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~ 124 (159)
T cd01923 81 DGRGVLSMANSGP-NTNGSQFFITYRSCKHLDGKHTVFGRVVGGL 124 (159)
T ss_pred CCCcEEEEeeCCC-CCcccEEEEECCCCcccCCCccEEEEEEcCH
Confidence 4567776643322 2245667777776667776 6888888764
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.53 E-value=31 Score=33.97 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC
Q 011473 55 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D 134 (485)
.-.+.+..+.-++||++++.++.-....-||... ......-+.....+.++.|+||+...+.+ ..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--------------~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--------------TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---------------SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCC--------------ccceEEccCccceehhceecCCCCEEEEe-CC
Confidence 4457788889999999888887766777887632 11111122345679999999998887654 88
Q ss_pred CcEEEEE
Q 011473 135 RRIRVFW 141 (485)
Q Consensus 135 ~~I~iwd 141 (485)
+.|+.=+
T Consensus 207 g~~~~s~ 213 (302)
T PF14870_consen 207 GQIQFSD 213 (302)
T ss_dssp TEEEEEE
T ss_pred cEEEEcc
Confidence 8888776
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.27 E-value=3.7 Score=38.34 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=52.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEee--------cCCccEEEEEEcCCCCEEEEEeCCCc
Q 011473 65 YNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL--------KSKTTVSAIEVSPDGKQFSITSPDRR 136 (485)
Q Consensus 65 fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~--------~~~~~v~~i~~spdg~~lat~s~D~~ 136 (485)
+...+++++....+|.+.+||+.+.+..-. ...+..+- .....|..+.++.+|.-+++-+ ++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------PVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------CccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 455788899999999999999988765433 11111111 3556789999999999888765 578
Q ss_pred EEEEECCCCc
Q 011473 137 IRVFWFRTGK 146 (485)
Q Consensus 137 I~iwd~~tg~ 146 (485)
.+.||..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 9999976544
No 429
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=0.22 Score=43.80 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=69.7
Q ss_pred EEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccC----CCCCE------EEEEeC-
Q 011473 274 LLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTT----SLPDN------VILHTT- 337 (485)
Q Consensus 274 l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~----~~~~~------~~~~t~- 337 (485)
.+.|..++..|.||....|++++| .++++++|++.. ....+++|. +++... ++... ...+..
T Consensus 3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQg--Gd~~~~~g~gg~~~~f~~E~~~~~~~~~ 80 (158)
T COG0652 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQG--GDPTGGDGTGGPGPPFKDENFALNGDRH 80 (158)
T ss_pred eeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeec--CCCCCCCCCCCCCCCCcccccccccccC
Confidence 467888899999999999999999 778899999988 788999988 454432 11111 222222
Q ss_pred -CeEEEEEecCCCChHH--HHHHHHhhhcCccCC--ceEEEEEeC
Q 011473 338 -MGDIHMKLYPEECPKT--VENFTTHCRNEYYNN--LIFHRVIKG 377 (485)
Q Consensus 338 -~G~i~i~L~~~~aP~~--~~nF~~l~~~~~y~g--~~f~rv~~~ 377 (485)
.|.|-+-=.+ .|.+ .+-|+.+....+.|+ +.|-+|+.+
T Consensus 81 ~~G~lsMA~~g--~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~G 123 (158)
T COG0652 81 KRGTLSMARAG--DPNSNGSQFFITVVDNPFLDGKYTVFGQVVEG 123 (158)
T ss_pred CcceEeEcccC--CcCCccCeEEEEecCCcccCCCCcEEEEEehh
Confidence 4555554333 4544 467888887777654 788888776
No 430
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.86 E-value=60 Score=36.66 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 011473 202 SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 281 (485)
Q Consensus 202 ~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d 281 (485)
+|++||. =...+++++..+++.+|+--.+..+.-.+.+... -|...++=-.+.
T Consensus 839 ngkllA~-In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~--------------------------gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 839 NGKLLAG-INQSVRLYEWTTERELRIECNISNPIIALDLQVK--------------------------GDEIAVGDLMRS 891 (1096)
T ss_pred CCeEEEe-cCcEEEEEEccccceehhhhcccCCeEEEEEEec--------------------------CcEEEEeeccce
Confidence 5665543 2334899999888766654333322222222222 344444445555
Q ss_pred ceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhh
Q 011473 282 HRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHC 361 (485)
Q Consensus 282 ~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~ 361 (485)
.++-.|...+....| =.||++.+ ++.++ ..-..++....++.|.+.+-.++..++.--++++---
T Consensus 892 itll~y~~~eg~f~e---vArD~~p~------Wmtav------eil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~ 956 (1096)
T KOG1897|consen 892 ITLLQYKGDEGNFEE---VARDYNPN------WMTAV------EILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEE 956 (1096)
T ss_pred EEEEEEeccCCceEE---eehhhCcc------ceeeE------EEecCceEEeecccccEEEEEecCCCCchhhhhcccc
Confidence 566666555433332 26888876 33333 2234567778888999888888888988888887666
Q ss_pred hcCccCCceEEEEEeCc-EEE
Q 011473 362 RNEYYNNLIFHRVIKGF-MIQ 381 (485)
Q Consensus 362 ~~~~y~g~~f~rv~~~~-~iq 381 (485)
.+.||-|-.+.+-..+- +.|
T Consensus 957 ~~~~hlGelvn~f~hg~lv~~ 977 (1096)
T KOG1897|consen 957 VGKFHLGELVNKFRHGSLVMQ 977 (1096)
T ss_pred eeeEEeccceeeeeecceEee
Confidence 67788887666665553 344
No 431
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=86.84 E-value=0.24 Score=44.18 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=66.7
Q ss_pred EEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCE-----------------
Q 011473 274 LLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDN----------------- 331 (485)
Q Consensus 274 l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~----------------- 331 (485)
||-|..++..|-||...+|++.+| .++++++|+.+. ...++++|. +++........
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQg--Gd~~~~g~~~~~~~~~~~~~~~~~~~~e 78 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQT--GDPTGTGAGGESIYSQLYGRQARFFEPE 78 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEE--CCcCCCCCCCcccccccccccCcccCcc
Confidence 356888999999999999999998 788999999987 455666666 33322111111
Q ss_pred ---EEEEeCCeEEEEEecCCCChHHHHHHHHhhh-cCccCC--ceEEEEEeCc
Q 011473 332 ---VILHTTMGDIHMKLYPEECPKTVENFTTHCR-NEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 332 ---~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~-~~~y~g--~~f~rv~~~~ 378 (485)
...+...|.|-+--.++.. .+.+-|+.+.. ..++++ +.|-||+.|+
T Consensus 79 ~~~~~~h~~~G~l~ma~~~~~~-~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~ 130 (166)
T cd01921 79 ILPLLKHSKKGTVSMVNAGDNL-NGSQFYITLGENLDYLDGKHTVFGQVVEGF 130 (166)
T ss_pred cCCccccCCceEEEEeECCCCC-ccceEEEEcCCCCcccCCCccEEEEEEcCH
Confidence 1123345777665444322 46667777753 355554 7888888764
No 432
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=86.78 E-value=0.28 Score=42.87 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=66.0
Q ss_pred EEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCE-------------EEEEe
Q 011473 275 LCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDN-------------VILHT 336 (485)
Q Consensus 275 ~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~-------------~~~~t 336 (485)
|-|..++-.|-||...+|++.+| .++++++|+.++ ...++.++. +++...+.+.. ...+.
T Consensus 2 i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~--Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~ 79 (148)
T cd01927 2 IHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQT--GDPTGDGTGGESIWGKEFEDEFSPSLKHD 79 (148)
T ss_pred eEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEe--cccCCCCCCCCcccCCccccccccccCcC
Confidence 56778899999999999999998 888999999987 455666666 33322211111 11233
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011473 337 TMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 337 ~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
..|.|-+--.+. --.+.+-|+.+....++|+ +.|-||+.|+
T Consensus 80 ~~G~l~ma~~~~-~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~ 122 (148)
T cd01927 80 RPYTLSMANAGP-NTNGSQFFITTVATPWLDNKHTVFGRVVKGM 122 (148)
T ss_pred CCeEEEEeeCCC-CCCCceEEEEcCCCcccCCCceEEEEEEcCH
Confidence 347666643221 2235567777776667765 6788888774
No 433
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.70 E-value=25 Score=36.04 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCcce-EEEEeCCC----CeEEEEEcCCCCCcceE-EEecCCCCeEEEEEcCCCCEEEEEeCCC-----------cEEEE
Q 011473 22 DVKAG-LAISDRNS----SFVHIYDARADSNEPLI-SKKVHMGPVKVMRYNPVFDTVISADDKG-----------IIEYW 84 (485)
Q Consensus 22 ~~~~~-l~vs~s~d----~~I~iwd~~~~~~~~~~-~l~~h~~~V~~l~fspd~~~l~s~s~dg-----------~i~~W 84 (485)
+|++. ++++-+.. .+++++|++ +++.+. .+..- .-..+.|.+|++.|+-...+. .|.+|
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~--tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLE--TGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETT--TTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECC--CCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45554 44443333 469999997 665543 22221 112399999998776655443 24555
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCC-c-cEEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSK-T-TVSAIEVSPDGKQFSITSP---D-RRIRVFWFRTG 145 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~-~-~v~~i~~spdg~~lat~s~---D-~~I~iwd~~tg 145 (485)
.+.+.. ..+...+.... . ....+..|+||++++..+. + ..+.+.|...+
T Consensus 208 ~~gt~~------------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 208 KLGTPQ------------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp ETTS-G------------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred ECCCCh------------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 554421 11122333322 2 2568899999999876442 2 35777788764
No 434
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=2.3 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhhh
Q 011473 340 DIHMKLYPEECPKTVENFTTHCR 362 (485)
Q Consensus 340 ~i~i~L~~~~aP~~~~nF~~l~~ 362 (485)
-|.||||.+.||.++..|+.+..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998864
No 435
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.30 E-value=51 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred EEcCCCC---EEEEEeCCCcEEEEECCCCcEEE
Q 011473 120 EVSPDGK---QFSITSPDRRIRVFWFRTGKLRR 149 (485)
Q Consensus 120 ~~spdg~---~lat~s~D~~I~iwd~~tg~~~~ 149 (485)
.+..+|+ .++.+.++|.+.+.|-+||+.+.
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 3445787 77788999999999999999874
No 436
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.81 E-value=0.48 Score=38.84 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=51.7
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEEEEEeCC
Q 011473 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNVILHTTM 338 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~~~~t~~ 338 (485)
..++|.++|.+|-+|-.+.|++-|+ .++.-|+||.+. +...++.+. ++++..+.++..+|...+
T Consensus 3 vtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~--~~~~~tgrgg~siwg~~f 71 (161)
T KOG0884|consen 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQT--GDPTHTGRGGNSIWGKKF 71 (161)
T ss_pred EEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEe--CCCCCCCCCCccccCCcc
Confidence 5689999999999999999999998 677899999854 777887777 677777777777765443
No 437
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.58 E-value=0.082 Score=43.52 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=71.5
Q ss_pred CCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEEEEEeCCeE-EEE
Q 011473 270 SDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNVILHTTMGD-IHM 343 (485)
Q Consensus 270 ~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~-i~i 343 (485)
+-...+-|+.+...+-+|-+-.|++-.| .+.+|+|||... -...++++. +++++.+-+...+....+-+ |.=
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQG--GDPTGTGRGGaSIYG~kF~DEi~~ 86 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQG--GDPTGTGRGGASIYGDKFEDEIHS 86 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeec--CCCCCCCCCccccccchhhhhhhh
Confidence 5556778999999999999999999888 788999999966 567888888 88887776666655433222 222
Q ss_pred EecC---------CCChH--HHHHHHHhhhcCccCC--ceEEEEEeC
Q 011473 344 KLYP---------EECPK--TVENFTTHCRNEYYNN--LIFHRVIKG 377 (485)
Q Consensus 344 ~L~~---------~~aP~--~~~nF~~l~~~~~y~g--~~f~rv~~~ 377 (485)
+|-. ..-|. ..+.|+.|+-..+.|| +.|-||..|
T Consensus 87 dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~G 133 (164)
T KOG0881|consen 87 DLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSG 133 (164)
T ss_pred hhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhh
Confidence 2211 11232 2345666666666665 567777555
No 438
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.03 E-value=5.3 Score=39.00 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=87.4
Q ss_pred CCceeEEEEcCCCceEEee------cCCccEEEEEEcCCC------CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011473 92 PESEVSFRLKSDTNLFEIL------KSKTTVSAIEVSPDG------KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~------~~~~~v~~i~~spdg------~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
+..++.|++++.+-++.+. ...+....+.+.... .-.++=+....|-|+|+.+++..|.+..+...--
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 3445667777666554432 234667888887622 2234444556899999999999888865222110
Q ss_pred hhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC---CCCEEEEecCCCeEEEEcccCeEEEeecccCCccc
Q 011473 160 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE---SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~---~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
....+... |. .+.... .+..++.+| +|++|-+....+-+++.+.|.-+. .......
T Consensus 113 -----~~~~~~i~----g~------~~~~~d--g~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~----~~~~~~~ 171 (287)
T PF03022_consen 113 -----DAGPFTIG----GE------SFQWPD--GIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR----DPSLSDA 171 (287)
T ss_dssp -----SSEEEEET----TE------EEEETT--SEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC----STT--HH
T ss_pred -----cccceecc----Cc------eEecCC--CccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh----Ccccccc
Confidence 00000000 11 111111 134666654 888999998888888887653321 1000001
Q ss_pred e---eeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCC
Q 011473 237 F---LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 296 (485)
Q Consensus 237 ~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~ 296 (485)
- -.+-.++.++..... +.| .+++.++.+-.+.+.|+.|+...|.+.+
T Consensus 172 ~~~~~~v~~lG~k~~~s~g--~~~-----------D~~G~ly~~~~~~~aI~~w~~~~~~~~~ 221 (287)
T PF03022_consen 172 QALASQVQDLGDKGSQSDG--MAI-----------DPNGNLYFTDVEQNAIGCWDPDGPYTPE 221 (287)
T ss_dssp H-HHHT-EEEEE---SECE--EEE-----------ETTTEEEEEECCCTEEEEEETTTSB-GC
T ss_pred ccccccceeccccCCCCce--EEE-----------CCCCcEEEecCCCCeEEEEeCCCCcCcc
Confidence 0 000111111111111 111 2789999999999999999987655443
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.50 E-value=2 Score=46.09 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=32.2
Q ss_pred ccEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 011473 114 TTVSAIEVSP----DGKQFSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 114 ~~v~~i~~sp----dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
..+.++++++ +..++++.+.|+++|+||+.+++++++.+-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4466777777 7789999999999999999999999887553
No 440
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=84.45 E-value=0.36 Score=42.96 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=63.2
Q ss_pred EEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccC--------CCCCE--EEEEeCC
Q 011473 274 LLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTT--------SLPDN--VILHTTM 338 (485)
Q Consensus 274 l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~--------~~~~~--~~~~t~~ 338 (485)
+|.|..++..|.||...+|++.+| .++++++|+..+ ....+++|. ++.... ..... ..+.-..
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQg--Gd~~~~~~~~~~~~~~~~e~~~~~~~~~ 80 (164)
T PRK10791 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQG--GGFEPGMKQKATKEPIKNEANNGLKNTR 80 (164)
T ss_pred EEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEe--CCcCCCCCcCCCCCCcCCcccccccCCC
Confidence 577899999999999999999998 888999999988 455666666 321100 00001 1222345
Q ss_pred eEEEEEecCCCChHHHHHHHHhhhcCc----------cCCceEEEEEeCc
Q 011473 339 GDIHMKLYPEECPKTVENFTTHCRNEY----------YNNLIFHRVIKGF 378 (485)
Q Consensus 339 G~i~i~L~~~~aP~~~~nF~~l~~~~~----------y~g~~f~rv~~~~ 378 (485)
|.|-+--.+..--.+.+-|+.+....+ +..+.|-||+.|+
T Consensus 81 G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~ 130 (164)
T PRK10791 81 GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGM 130 (164)
T ss_pred cEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCH
Confidence 666654332111124556665554333 2357788887664
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.09 E-value=8.7 Score=42.52 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC----CCCC--CceeEEE-EcCCCceEEeecCCccEEEEEEcCC---CCE
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHT----LQFP--ESEVSFR-LKSDTNLFEILKSKTTVSAIEVSPD---GKQ 127 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t----~~~~--~~~~~~~-~~~~~~l~~~~~~~~~v~~i~~spd---g~~ 127 (485)
-.|..|.+||+|++++-.|..|..-+-=++. +.+. ...+.++ +..+..++ ...+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCCCe
Confidence 3578899999999999888877655432221 1111 0111111 11111111 1234567899999996 589
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 011473 128 FSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 128 lat~s~D~~I~iwd~~tg~ 146 (485)
|+.=..|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997544
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.76 E-value=4.9 Score=25.80 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=19.2
Q ss_pred CccEEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 011473 113 KTTVSAIEVSPDGKQFSITSP-D--RRIRVF 140 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~-D--~~I~iw 140 (485)
...-...+|||||++|+-.+. + +.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677899999999887663 4 555555
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.44 E-value=0.67 Score=50.67 Aligned_cols=124 Identities=11% Similarity=0.002 Sum_probs=68.7
Q ss_pred CCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCC
Q 011473 11 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMR-----------YNPVFDTVISADDKG 79 (485)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~-----------fspd~~~l~s~s~dg 79 (485)
|..+.|.....+ ...+.-+-++++|++.... +. ...-+.+|...++.++ .||||+.++.+..||
T Consensus 183 ~~~V~wcp~~~~--~~~ic~~~~~~~i~lL~~~--ra-~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 183 PQLVSWCPIAVN--KVYICYGLKGGEIRLLNIN--RA-LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred cceeeecccccc--cceeeeccCCCceeEeeec--hH-HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 344556544332 2455556677888886653 21 1122346776666554 489999999999999
Q ss_pred cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCc-cEEEEEEcCC-------C--CEEEEEe-CCCcEEEEECCCCcEE
Q 011473 80 IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT-TVSAIEVSPD-------G--KQFSITS-PDRRIRVFWFRTGKLR 148 (485)
Q Consensus 80 ~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~-~v~~i~~spd-------g--~~lat~s-~D~~I~iwd~~tg~~~ 148 (485)
.++.|.+.- +.-..-.+++.++.|.. +-.|.-+... | .++++++ ..+-+++|....-+|+
T Consensus 258 ~v~f~Qiyi---------~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 258 SVGFYQIYI---------TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccceeeeee---------eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999995421 10011233444444442 1111112111 1 2344544 3567999998888876
No 444
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.70 E-value=0.89 Score=44.36 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=54.8
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEEEEEe
Q 011473 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNVILHT 336 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~~~~t 336 (485)
++||-|..+|-.|-||..++|.+-.| .+|+--|||-++ .+..+.+|+ ++|++.+.++..++.-
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQT--GDPtGtG~GG~si~~~ 69 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQT--GDPTGTGDGGESIYGV 69 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeec--CCCCCCCCCcceeeee
Confidence 46899999999999999999999988 889999999988 677888888 8998888887776654
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.68 E-value=16 Score=38.78 Aligned_cols=117 Identities=12% Similarity=0.144 Sum_probs=63.7
Q ss_pred eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC---CCCcceEEEec---CCCCe--EEEEEcCCCCEEEEEeCCCcEEEE
Q 011473 13 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARA---DSNEPLISKKV---HMGPV--KVMRYNPVFDTVISADDKGIIEYW 84 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~---~~~~~~~~l~~---h~~~V--~~l~fspd~~~l~s~s~dg~i~~W 84 (485)
.++|-.......+.+++-- -.+.|-+|.+.. +..+.+.+-.. ..-+| ..+.|||....|+.-.....--+.
T Consensus 61 GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~ 139 (671)
T PF15390_consen 61 GLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLP 139 (671)
T ss_pred eeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEee
Confidence 4566554433344444443 468899999852 22333333221 12233 357799988866543322222222
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 011473 85 SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR 143 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~ 143 (485)
+++.. ...+..=-+..+.|.|.+|.+||++|+.+- ..-.-+|||-.
T Consensus 140 sV~~d-------------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 140 SVHCD-------------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eeeeC-------------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 32210 112222224557799999999999886654 44567899843
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.64 E-value=20 Score=37.39 Aligned_cols=140 Identities=13% Similarity=0.159 Sum_probs=78.7
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC--------CEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011473 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF--------DTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~--------~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
.++..+..-..++-.|+. .++.+.++.-|... -|.|.|+. +.|+--|..+..|| |++-.. +
T Consensus 481 li~~dg~~~~kLykmDIE--rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR~~g---N--- 549 (776)
T COG5167 481 LIYLDGGERDKLYKMDIE--RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPRARG---N--- 549 (776)
T ss_pred eEEecCCCcccceeeecc--cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe-cccccC---C---
Confidence 344444444555555665 67778888777665 57888864 35666666665555 443210 0
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSP----DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~sp----dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
.+. ....+..++.-.||. .+-++|.+|..|-||+||-- |...++. +.
T Consensus 550 -------Ki~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKta-------------------lP- 600 (776)
T COG5167 550 -------KIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTA-------------------LP- 600 (776)
T ss_pred -------cee-eeeehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhc-------------------Cc-
Confidence 000 001111122222322 34589999999999999942 2221111 00
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcc
Q 011473 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLH 220 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~ 220 (485)
.....+..|..+.+|++|+..|...+-+.|+.
T Consensus 601 ---------------~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 601 ---------------GLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ---------------ccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 01112235667889999999998888888864
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.63 E-value=13 Score=38.31 Aligned_cols=96 Identities=8% Similarity=0.001 Sum_probs=57.7
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-------eeEEEEcCCCceEEeecCCccEEEEEE-cC
Q 011473 52 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-------EVSFRLKSDTNLFEILKSKTTVSAIEV-SP 123 (485)
Q Consensus 52 ~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~-------~~~~~~~~~~~l~~~~~~~~~v~~i~~-sp 123 (485)
.|......+.++..+|++++.|..+.=|.|.++|+.++...+. .+.|-....... .+...-....- ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~----~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGD----RDRSNSNSPKSSSR 377 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccc----cccccccccCCCCc
Confidence 3444566789999999999999888889999999988766543 111110000000 00000000000 01
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCcEEEEe
Q 011473 124 DGKQFSITS-PDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 124 dg~~lat~s-~D~~I~iwd~~tg~~~~~~ 151 (485)
...+|+... .=+.|.||++++|..+..+
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 124556655 4788999999999988776
No 448
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=82.32 E-value=0.52 Score=43.00 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=66.1
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCC--------CCCE--EEEEeC
Q 011473 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTS--------LPDN--VILHTT 337 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~--------~~~~--~~~~t~ 337 (485)
.+|-|..++..|.||...+|++.+| .++++++|+.++ ....+++|. ++..... -.+. ..++-.
T Consensus 31 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQg--G~~~~~~~~~~~~~~~~~e~~~~l~~~ 108 (190)
T PRK10903 31 VLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQG--GGFTEQMQQKKPNPPIKNEADNGLRNT 108 (190)
T ss_pred EEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEe--CCcCCCCCCCCCCCcccCcccccCcCC
Confidence 5678899999999999999999998 777899999987 455666665 2211100 0001 112334
Q ss_pred CeEEEEEecCCCChHHHHHHHHhhhcCccC-------CceEEEEEeCc
Q 011473 338 MGDIHMKLYPEECPKTVENFTTHCRNEYYN-------NLIFHRVIKGF 378 (485)
Q Consensus 338 ~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~-------g~~f~rv~~~~ 378 (485)
.|.|-+--..+.--.+.+-|+.+....+.| .+.|-||+.|+
T Consensus 109 ~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~ 156 (190)
T PRK10903 109 RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGM 156 (190)
T ss_pred CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCH
Confidence 566665433321223566777766655554 27788887664
No 449
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.12 E-value=50 Score=32.53 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCC---CcceEEEEeCC---------CCeEEEEEcCCC-C-CcceEEE--ecCCCCeEEEEEcCCCCEEEE
Q 011473 11 PGAVEWVYKQGD---VKAGLAISDRN---------SSFVHIYDARAD-S-NEPLISK--KVHMGPVKVMRYNPVFDTVIS 74 (485)
Q Consensus 11 ~~~~~~~~~~~~---~~~~l~vs~s~---------d~~I~iwd~~~~-~-~~~~~~l--~~h~~~V~~l~fspd~~~l~s 74 (485)
+.+++-+....+ ....++|+.+. .|.|.++++... . ...+..+ ....++|++++-- .+.++++
T Consensus 26 ~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~ 104 (321)
T PF03178_consen 26 VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA 104 (321)
T ss_dssp EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEE
T ss_pred EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEe
Confidence 344555555443 24555655431 288999999721 0 0122222 2457899998865 3444444
Q ss_pred EeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec--CCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 75 ADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 75 ~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
. .+.|.+|++...+ .+..... ....+.++... +.+++.|.....+.++...
T Consensus 105 ~--g~~l~v~~l~~~~--------------~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 105 V--GNKLYVYDLDNSK--------------TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp E--TTEEEEEEEETTS--------------SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred e--cCEEEEEEccCcc--------------cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 4 3788888765432 1111111 22245555554 6699998888888877443
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.06 E-value=8.8 Score=35.85 Aligned_cols=81 Identities=7% Similarity=-0.010 Sum_probs=51.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEEC
Q 011473 121 VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD 200 (485)
Q Consensus 121 ~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd 200 (485)
+..++++|++...+|.+++||+.+++++..- .++.++-....... ......+.++..+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~---------------------~~~~~~i~~~~lt 75 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSD---------------------KSSSPNITSCSLT 75 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhccccccc---------------------CCCCCcEEEEEEc
Confidence 5567999999999999999999999984322 12222211000000 0122344577788
Q ss_pred CCCCEEEEecCCCeEEEEcccCe
Q 011473 201 ESSNFLIYATLLGIKIVNLHTNK 223 (485)
Q Consensus 201 ~~g~~l~~~s~~~i~v~d~~tg~ 223 (485)
.+|.-|++-++.....|+..=+.
T Consensus 76 ~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 76 SNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred CCCCEEEEEeCCCEEEeccccce
Confidence 89998888877667788765443
No 451
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=0.54 Score=46.39 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=75.4
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEEEEEeCCeE------
Q 011473 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNVILHTTMGD------ 340 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~------ 340 (485)
=+.|.|..++-.+-||-...|+..|| .+++++|||+.. +..++++|. ++|++.+.++..+|..++-+
T Consensus 279 yvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQG--GDPTGTG~GGeSiWgKpFkDEf~~~l 356 (518)
T KOG0883|consen 279 YVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQG--GDPTGTGRGGESIWGKPFKDEFCSNL 356 (518)
T ss_pred eEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeC--CCCCCCCCCCccccCCccccccCCCC
Confidence 35689999999999999999999999 999999999977 788999999 99999999999988766532
Q ss_pred -----EEEEecCCCChHH--HHHHHHhh--hcCccCCceEEEEEeCc
Q 011473 341 -----IHMKLYPEECPKT--VENFTTHC--RNEYYNNLIFHRVIKGF 378 (485)
Q Consensus 341 -----i~i~L~~~~aP~~--~~nF~~l~--~~~~y~g~~f~rv~~~~ 378 (485)
=++-+-. .-|+| .+.|+.+- +.--|..+.|-||+-|+
T Consensus 357 ~H~gRGvlSMAN-sGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGl 402 (518)
T KOG0883|consen 357 SHDGRGVLSMAN-SGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGL 402 (518)
T ss_pred CcCCcceEeecc-CCCCCCCceEEEEecchhhccccceeeeeeeccH
Confidence 1222211 12322 23444332 22225568888887654
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.85 E-value=12 Score=34.53 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCce-eEEEEcCCCceEEeec
Q 011473 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE-VSFRLKSDTNLFEILK 111 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~-~~~~~~~~~~l~~~~~ 111 (485)
.++...+||.+ +.+++..+.- .+.=+.+ ..|++-|+.++...+++.-|++++...... +.++ +.++.
T Consensus 109 ~egvaf~~d~~--t~~~lg~~~y-~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~---g~pv~---- 176 (262)
T COG3823 109 KEGVAFKYDAD--TLEELGRFSY-EGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDD---GVPVS---- 176 (262)
T ss_pred ccceeEEEChH--Hhhhhccccc-CCcceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEEC---Ceecc----
Confidence 45666666665 4455544431 1222333 346666777766678887798887655431 1111 11111
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCC
Q 011473 112 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~ 191 (485)
..+.+.|= ||...|-.-.+..|-.-|+.+|+++..++-+.-. .+........
T Consensus 177 ---~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~------------------------~~~~~~~~~~ 228 (262)
T COG3823 177 ---KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL------------------------KELNLDKSND 228 (262)
T ss_pred ---cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc------------------------hhcCcccccc
Confidence 12223332 7777787777788888899999998887542100 0111112233
Q ss_pred CCCceEEECCCC-CEEEEec
Q 011473 192 APPSNAIFDESS-NFLIYAT 210 (485)
Q Consensus 192 ~~~~~i~fd~~g-~~l~~~s 210 (485)
...+.|+|+|++ +++++|-
T Consensus 229 nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 229 NVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccceeecCcCCeEEEecC
Confidence 456899999998 7888773
No 453
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.55 E-value=51 Score=31.52 Aligned_cols=109 Identities=15% Similarity=-0.005 Sum_probs=69.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011473 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
..+++-||..+.+.--|.. ++.....-. -..++.+-+.- -|++++-+-..|.+.+.+..|++..
T Consensus 23 kT~v~igSHs~~~~avd~~--sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~------------ 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQ--SGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQI------------ 86 (354)
T ss_pred ceEEEEecCCceEEEecCC--CCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhe------------
Confidence 3456667777777777776 555543321 11223322222 4677888888888888887775322
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
..+..-...=......+|+..+-.|+.|++.+.-|.++..|++..
T Consensus 87 --w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 87 --WNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred --eeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 112211111123356779999999999999999999999998875
No 454
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=81.39 E-value=0.7 Score=40.60 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC----------E---EEE
Q 011473 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD----------N---VIL 334 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~----------~---~~~ 334 (485)
..|-|..++-.|-||...+|++.+| .+++.++|+.++ ...++.++. +++.....+. . ..-
T Consensus 3 v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~--Gd~~~~g~g~~~~~~~~~~~e~~~~~~ 80 (153)
T cd01928 3 VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQT--GDPTGTGKGGESIWGKKFEDEFRETLK 80 (153)
T ss_pred EEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEc--cccCCCCCCCCccCCCccccccccCCC
Confidence 4577889999999999999999998 778899999987 445666665 3332211111 1 111
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011473 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
+...|.|-+--.+.. -...+-|+.+....+.|+ +.|-||+.|+
T Consensus 81 ~~~~G~v~ma~~~~~-~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~ 125 (153)
T cd01928 81 HDSRGVVSMANNGPN-TNGSQFFITYAKQPHLDGKYTVFGKVIDGF 125 (153)
T ss_pred cCCCcEEEEeeCCCC-CcccEEEEEeCCCcccCCCceEEEEEEeCH
Confidence 234566655432211 123455565555555543 6777777664
No 455
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.33 E-value=5 Score=39.78 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=36.6
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCcEEEEecc
Q 011473 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSIT-SPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~-s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
|+.++++.+..+.-. ..+.+|++|.|.+ +|.+. ..++.+.+||..||+.++++++
T Consensus 274 ~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 444556666655521 3477999999887 44344 4589999999999999999854
No 456
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=80.63 E-value=72 Score=32.71 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=90.3
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-----CC--
Q 011473 53 KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-----DG-- 125 (485)
Q Consensus 53 l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-----dg-- 125 (485)
+...+++|++++.| |=.++|.|..+|.+.+-|++.-. +.|+-.... ...-......++++.|+- |+
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa-----vI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA-----VIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE-----EEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe-----EEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence 34458999999997 55588999999999999986421 222211111 000111234577888862 43
Q ss_pred -CEEEEEeCCCcEEEEECC--C-CcEEEEeccchhHHHhhhcCCCcccccccc--cccchh-hhhHhhhccCCCCCceEE
Q 011473 126 -KQFSITSPDRRIRVFWFR--T-GKLRRVYDESLEVAQDLQRSDAPLYRLEAI--DFGRRM-AVEKEIEKTETAPPSNAI 198 (485)
Q Consensus 126 -~~lat~s~D~~I~iwd~~--t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~g~~~-~~~~~i~~~~~~~~~~i~ 198 (485)
-.+.+|...|.+.+|.+. . |.-.-.+.+.. ......+..+..+ +.|+.. |....++......
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~----- 223 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLSKGI----- 223 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGGGT------
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccccCC-----
Confidence 477888888999999764 2 22111121111 0011111111111 112111 1111122111100
Q ss_pred ECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEee
Q 011473 199 FDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA 278 (485)
Q Consensus 199 fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~ 278 (485)
+--.++++++...||++...+.+..++.-.. ...+.....-. +.. ...+..|++=
T Consensus 224 --~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~------------~~~---------~~~~~~Lv~l 278 (395)
T PF08596_consen 224 --SIPGYVVVVSESDIRVFKPPKSKGAHKSFDD--PFLCSSASVVP------------TIS---------RNGGYCLVCL 278 (395)
T ss_dssp -----EEEEEE-SSEEEEE-TT---EEEEE-SS---EEEEEEEEEE------------EE----------EEEEEEEEEE
T ss_pred --CcCcEEEEEcccceEEEeCCCCcccceeecc--ccccceEEEEe------------ecc---------cCCceEEEEE
Confidence 0123778888888999999988877655422 11111111110 000 0345668888
Q ss_pred ecCceEEEEecCCCC
Q 011473 279 FKRHRIYLFSRREPE 293 (485)
Q Consensus 279 ~~d~~i~~f~~~~~~ 293 (485)
..++.+++|+-..-+
T Consensus 279 ~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 279 FNNGSIRIYSLPSLK 293 (395)
T ss_dssp ETTSEEEEEETTT--
T ss_pred ECCCcEEEEECCCch
Confidence 899999999876533
No 457
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=79.77 E-value=49 Score=31.56 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCCCcceEEEEeCCCCeEEEEE-cCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEcC---CCCC
Q 011473 20 QGDVKAGLAISDRNSSFVHIYD-ARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISAD---DKGIIEYWSP---HTLQ 90 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd-~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s---~dg~i~~Wd~---~t~~ 90 (485)
++++++.+.+....+...+++. ...+....+ .+. .-...|+++++||||..++-.. .++.|.+=-+ ..+
T Consensus 72 S~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g- 149 (253)
T PF10647_consen 72 SWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG- 149 (253)
T ss_pred cccCCCCEEEEEcCCCceEEEEecCCCcceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-
Confidence 3455565655555555666663 221122221 122 1112899999999999776554 2344443311 111
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC
Q 011473 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D 134 (485)
.+.. ....+.........+.+++|.+++++++.+...
T Consensus 150 ~~~~-------l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 150 VPRR-------LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred Ccce-------eccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 1111 011222222334578999999999887766643
No 458
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=79.75 E-value=0.56 Score=41.29 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred EEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCC--------CE--EEEEeCCe
Q 011473 275 LCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLP--------DN--VILHTTMG 339 (485)
Q Consensus 275 ~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~--------~~--~~~~t~~G 339 (485)
|-|..++-.|-||...+|.+.+| .++++++|+.++ ....++++. +++...... +. -.++-..|
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~--Gd~~~~~~~~~~~~~~~~e~~~~~~~~~G 79 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQG--GGFTPDLAQKETLKPIKNEAGNGLSNTRG 79 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEe--CCCCCCCCccccCCcccCcccccccCCce
Confidence 35677889999999999999998 888999999987 455676666 332211100 00 11223456
Q ss_pred EEEEEecCCCChHHHHHHHHhhhcCccC-------CceEEEEEeCc
Q 011473 340 DIHMKLYPEECPKTVENFTTHCRNEYYN-------NLIFHRVIKGF 378 (485)
Q Consensus 340 ~i~i~L~~~~aP~~~~nF~~l~~~~~y~-------g~~f~rv~~~~ 378 (485)
.|-+--.+..--.+++-|+.+.....++ .+.|-||+.|.
T Consensus 80 ~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~ 125 (155)
T cd01920 80 TIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGM 125 (155)
T ss_pred EEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCH
Confidence 6665443221223466677776655554 37888887763
No 459
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.64 E-value=59 Score=35.36 Aligned_cols=72 Identities=6% Similarity=0.210 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEE--cCCCCEEEEEeCCC
Q 011473 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEV--SPDGKQFSITSPDR 135 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~--spdg~~lat~s~D~ 135 (485)
....-+.-|.-++..+.-+....+.|||...+.+. |+ ..| .....|.++.| .|||+.+++.|-.+
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE-----~~-------~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE-----YE-------ESF-SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE-----Ee-------eee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 34455555565555444445568899998764311 11 012 33567888888 46999999999999
Q ss_pred cEEEEEC
Q 011473 136 RIRVFWF 142 (485)
Q Consensus 136 ~I~iwd~ 142 (485)
.|.+|--
T Consensus 97 ~v~l~~Q 103 (631)
T PF12234_consen 97 HVLLYTQ 103 (631)
T ss_pred EEEEEEc
Confidence 9999953
No 460
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=79.24 E-value=13 Score=38.25 Aligned_cols=104 Identities=10% Similarity=0.029 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCCCcceEEEe-cCC-CCeEEEEEcCCC--CE-EEEEeCCCcEEEE-cCCCCCCCCceeEEEEcC-----
Q 011473 34 SSFVHIYDARADSNEPLISKK-VHM-GPVKVMRYNPVF--DT-VISADDKGIIEYW-SPHTLQFPESEVSFRLKS----- 102 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~-~h~-~~V~~l~fspd~--~~-l~s~s~dg~i~~W-d~~t~~~~~~~~~~~~~~----- 102 (485)
..++.+||+. +.++++++. +-. ..+..|+|..+- .+ ++.+--...|-.| ..+.++ |..+.
T Consensus 221 G~~l~vWD~~--~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-------W~a~kVi~ip 291 (461)
T PF05694_consen 221 GHSLHVWDWS--TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-------WAAEKVIDIP 291 (461)
T ss_dssp --EEEEEETT--TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-------EEEEEEEEE-
T ss_pred cCeEEEEECC--CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-------eeeeEEEECC
Confidence 3689999998 788888887 322 246678886653 32 4444455555555 211211 22110
Q ss_pred -----CCc----eEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 011473 103 -----DTN----LFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGK 146 (485)
Q Consensus 103 -----~~~----l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~ 146 (485)
+-. +..+..-..-++.|.+|.|.++|-..+ .+|.||.||+..-.
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 000 111122234579999999999997666 69999999998643
No 461
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.53 E-value=19 Score=37.56 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=59.1
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEE
Q 011473 33 NSSFVHIYDARADSNEPLISKKVHM----GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE 108 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~----~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~ 108 (485)
+|..|.-||.+-.....+..-++|. ..-.|.+-. ...+++.||.+|-||++|- .+...+ ..
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AK-------------TA 466 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAK-------------TA 466 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhh-------------hc
Confidence 5778888998732222233333442 122333332 2347899999999999986 221111 11
Q ss_pred eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 109 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
+.+-..+|..+..+.||++++..| +..+-+-|+.
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 556667899999999999977644 6667776653
No 462
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.83 E-value=9.4 Score=43.34 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=67.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCC------CCcceEEE---ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCc
Q 011473 25 AGLAISDRNSSFVHIYDARAD------SNEPLISK---KVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~------~~~~~~~l---~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
-..++..+++..|..||++.- +..+++.- ...-.-+.++.|+|.-. ..+.+..|+.|++.-+......
T Consensus 114 ~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-- 191 (1405)
T KOG3630|consen 114 DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-- 191 (1405)
T ss_pred eEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh--
Confidence 445555566778999998621 11222111 11123456888999654 5667778888887643211000
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
...+ .-...++|++|||.|+.++.|-..|++.-|-. ++++.+.+
T Consensus 192 -----------v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~i 235 (1405)
T KOG3630|consen 192 -----------VTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEI 235 (1405)
T ss_pred -----------hccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecc
Confidence 0001 12345799999999999999999999998864 44444443
No 463
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=76.83 E-value=0.84 Score=40.91 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=66.9
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC----------EE---E
Q 011473 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD----------NV---I 333 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~----------~~---~ 333 (485)
...|-|..++..|-||...+|++.+| .+++.++|+.++ ...++++|. +++...+.+. .. .
T Consensus 7 ~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQg--Gd~~~~g~g~~s~~g~~~~~E~~~~~ 84 (171)
T cd01925 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQG--GDPTGTGTGGESIYGEPFKDEFHSRL 84 (171)
T ss_pred EEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEc--cccCCCCccCcccCCCccCcccccCc
Confidence 45678899999999999999999998 777899999987 445666666 3332211111 10 1
Q ss_pred EEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEE
Q 011473 334 LHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVI 375 (485)
Q Consensus 334 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~ 375 (485)
.+...|.|-+--.+.. -.+.+-|+.+....++|| +.|-||+
T Consensus 85 ~~~~~G~l~ma~~g~~-s~~sqFfIt~~~~~~ldg~~tvFG~V~ 127 (171)
T cd01925 85 RFNRRGLVGMANAGDD-SNGSQFFFTLDKADELNNKHTLFGKVT 127 (171)
T ss_pred CCCCCcEEEECcCCCC-CcccEEEEEcCCCcccCCCceEEEEEE
Confidence 1334577766443322 345667777777777776 5788886
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.67 E-value=71 Score=31.45 Aligned_cols=100 Identities=10% Similarity=0.168 Sum_probs=48.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEc-CCCCCCCCceeEEEE
Q 011473 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWS-PHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd-~~t~~~~~~~~~~~~ 100 (485)
++++.+++.++.-....-||-- .+.=..+. ..-...|.++.|+|++.+.+.+ ..|.|+.=+ .... -.|.-
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G-~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~------~~w~~ 223 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPG-QTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG------ETWSE 223 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT--SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE------EEE--
T ss_pred CCCCcEEEEECcccEEEEecCC-CccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc------ccccc
Confidence 4566666555444444556642 11111222 1346789999999998876654 778887754 1110 01110
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC
Q 011473 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D 134 (485)
.+.......-.+..++|.+++..+|+|+..
T Consensus 224 ----~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 224 ----PIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -----B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ----ccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 111111122337999999999999987744
No 465
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=74.60 E-value=1.1e+02 Score=32.97 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=55.1
Q ss_pred cceEEEEeCCC------CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEcCCCCCCC
Q 011473 24 KAGLAISDRNS------SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFP 92 (485)
Q Consensus 24 ~~~l~vs~s~d------~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~t~~~~ 92 (485)
++.+.+.|+.| .++..||...+.-..+..+...+....... -+|.+.|.|+.|| ++..||+.+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~-- 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK-- 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc--
Confidence 34566666666 468888876322222222222222221121 2677888898886 46777776532
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCc
Q 011473 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR------RIRVFWFRTGK 146 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~------~I~iwd~~tg~ 146 (485)
|..... +......+-.+.+ +|+..++||.|+ ++..||..+++
T Consensus 408 -----W~~va~-----m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 408 -----WTPVAP-----MLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred -----ccccCC-----CCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 222111 1111111222333 788889998654 45566666554
No 466
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.55 E-value=69 Score=33.46 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011473 56 HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 56 h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
.-..-+.|+|.||+++|++--..|.|++++..+...... . ..+-............|+|+||=
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~---~----~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV---F----TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee---e----cCCceeccCCCCceeeEEECCCc
Confidence 334568999999998888766569999887554321000 0 00000001124568999999984
No 467
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.45 E-value=56 Score=35.78 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 011473 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~ 87 (485)
.|+||+. +|.++.++.-....+..+.|+.+. .|+....||++.+++..
T Consensus 65 ~I~If~~---sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNI---SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred eEEEEec---cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 4888887 577776665444488899998765 56677899999999764
No 468
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=74.33 E-value=20 Score=29.97 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=54.7
Q ss_pred EEEEEeCCeEEEEEecCCCChHHHHHHHHhhh----cCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccc-cccc
Q 011473 331 NVILHTTMGDIHMKLYPEECPKTVENFTTHCR----NEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFE-DEFH 405 (485)
Q Consensus 331 ~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~----~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~-~e~~ 405 (485)
.+.+......+.++|+.. .|++.|++..- -..|-+-.+++. |- .++ ++.
T Consensus 2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~E~y~~~-p~---------------------~l~~~~~- 55 (120)
T PF04126_consen 2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGNEKYFSL-PL---------------------KLPTEEN- 55 (120)
T ss_dssp EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTTEEEEE--S--------------------------SSS-
T ss_pred eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCceEEEeC-CC---------------------CCCcccC-
Confidence 456667777899999987 78888887652 122322211111 11 111 111
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCC-------CCCCCcEEEEEEcCHHHHHHHhc
Q 011473 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPW-------LDNKHTVFGRVIKGMDVVQAIEK 462 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~-------ld~~~~vfG~V~~G~~vl~~i~~ 462 (485)
.. .--..|-|+....+.+ |-|-+++.|. +-....++|||.+|.+.++++..
T Consensus 56 ~~-~~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 56 PR-SSVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp EE-SSB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cc-ccccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 11 1235578888655443 7777787753 44567899999999988776654
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.08 E-value=74 Score=35.10 Aligned_cols=119 Identities=7% Similarity=0.050 Sum_probs=74.4
Q ss_pred CCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC-------C---C--------CcceEEEecCCCCeEEEEEc--CCC
Q 011473 10 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA-------D---S--------NEPLISKKVHMGPVKVMRYN--PVF 69 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~-------~---~--------~~~~~~l~~h~~~V~~l~fs--pd~ 69 (485)
.|-++-.+....-...-+|+.+.+||.|.+|-++. . . -+|-..+. -...+++|+++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc
Confidence 34445555544444566777788999999997630 0 0 01222222 23478999999 778
Q ss_pred CEEEEEeCCCcEEEEcCC--CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-----C-EEEEEeCCCcEEEEE
Q 011473 70 DTVISADDKGIIEYWSPH--TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-----K-QFSITSPDRRIRVFW 141 (485)
Q Consensus 70 ~~l~s~s~dg~i~~Wd~~--t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-----~-~lat~s~D~~I~iwd 141 (485)
++||.++....|-||-.. ..+.... + -..+...|.+|+|-++. . ++++++-.|.+.+|+
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~----------~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHV----------P---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccc----------c---ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 888888888888888322 1111110 0 01144568899997643 2 778888899988888
Q ss_pred C
Q 011473 142 F 142 (485)
Q Consensus 142 ~ 142 (485)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 470
>PRK10115 protease 2; Provisional
Probab=74.06 E-value=43 Score=37.07 Aligned_cols=71 Identities=13% Similarity=-0.011 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC----cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011473 59 PVKVMRYNPVFDTVISA-DDKG----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~-s~dg----~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
.+..+.+|||+++|+-+ +.+| .|++-|+.+++.... .+.+. -..++|++|++.|.-...
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------------~i~~~---~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------------LLDNV---EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------------cccCc---ceEEEEeeCCCEEEEEEe
Confidence 46678899999976643 3333 455557766442111 02211 145899999987766554
Q ss_pred C------CcEEEEECCCC
Q 011473 134 D------RRIRVFWFRTG 145 (485)
Q Consensus 134 D------~~I~iwd~~tg 145 (485)
+ ..|+.+++.|+
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 36777888777
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.00 E-value=10 Score=24.45 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCcEEEEec
Q 011473 123 PDGKQFSITS-PDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 123 pdg~~lat~s-~D~~I~iwd~~tg~~~~~~~ 152 (485)
|||++|.++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6788776655 58899999999999887763
No 472
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.60 E-value=13 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCCCEEEEecC--CCeEEEEcccCeEEEeecccC
Q 011473 201 ESSNFLIYATL--LGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 201 ~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~~~ 232 (485)
|+|++|..+.. +.|.++|..++++++.+.-.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 57787776654 349999999999887775433
No 473
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.47 E-value=89 Score=30.03 Aligned_cols=128 Identities=12% Similarity=-0.028 Sum_probs=76.2
Q ss_pred eEEEecCC-CCeEEEEEcCCCCEEEEEeCCC--cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011473 50 LISKKVHM-GPVKVMRYNPVFDTVISADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 50 ~~~l~~h~-~~V~~l~fspd~~~l~s~s~dg--~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
+.+++... .-...+.|..++.++-|.+.-| .|+.+|+.+++.... ..+. ..-.--.++.-.| +
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~------------~~l~-~~~FgEGit~~~d-~ 101 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS------------VPLP-PRYFGEGITILGD-K 101 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE------------EE-T-TT--EEEEEEETT-E
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE------------EECC-ccccceeEEEECC-E
Confidence 44544222 2345888988899999998766 788889988654321 0111 1112234555434 3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEE
Q 011473 127 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFL 206 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l 206 (485)
.+.---.++...+||..+-+.+.++.- .. .=+.++.| ..+++
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y------------------~~-------------------EGWGLt~d-g~~Li 143 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY------------------PG-------------------EGWGLTSD-GKRLI 143 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE-------------------SS-------------------S--EEEEC-SSCEE
T ss_pred EEEEEecCCeEEEEccccceEEEEEec------------------CC-------------------cceEEEcC-CCEEE
Confidence 444447899999999999998877721 00 11566755 44566
Q ss_pred EEecCCCeEEEEcccCeEEEeec
Q 011473 207 IYATLLGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 207 ~~~s~~~i~v~d~~tg~~v~~~~ 229 (485)
++-+...+..+|..+-+.++.+.
T Consensus 144 ~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 144 MSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EECCccceEEECCcccceEEEEE
Confidence 66666779999998887776663
No 474
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.99 E-value=8.9 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe
Q 011473 127 QFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.+..++.++.+..+|.++|+.++.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5667788999999999999998765
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.56 E-value=57 Score=34.27 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011473 115 TVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.|..+..||.|..+|-.|.+|.+-.+=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 378899999999999999999766553
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.32 E-value=1.4e+02 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=28.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011473 112 SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
.++++.+|.||||.+.+|.--.|++|.+++..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI 96 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecC
Confidence 34589999999999999999999999999874
No 477
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=69.70 E-value=1.6e+02 Score=31.53 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=45.2
Q ss_pred ccEEEEEEcCC----CCEEEEEeCCCcEEEEECCC-----CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhH
Q 011473 114 TTVSAIEVSPD----GKQFSITSPDRRIRVFWFRT-----GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEK 184 (485)
Q Consensus 114 ~~v~~i~~spd----g~~lat~s~D~~I~iwd~~t-----g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 184 (485)
..|..++|+|- --.|......+.|.||-+.. +|.+..- ..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQ-------------------------------tc 105 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQ-------------------------------TC 105 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeee-------------------------------ee
Confidence 34899999994 33555567888999998752 2221110 11
Q ss_pred hhhccCCCCCceEEECCCCCEEEEecCCCeEEE
Q 011473 185 EIEKTETAPPSNAIFDESSNFLIYATLLGIKIV 217 (485)
Q Consensus 185 ~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~ 217 (485)
|+.+....--....|+|....|++-+...+-|+
T Consensus 106 Ei~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 106 EIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 233333333357789999999888887665443
No 478
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.08 E-value=1.4e+02 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEc
Q 011473 57 MGPVKVMRYNPVFDTVISADDKGIIEYWS 85 (485)
Q Consensus 57 ~~~V~~l~fspd~~~l~s~s~dg~i~~Wd 85 (485)
.+++..++.||+++.+|--..+|.+.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 36899999999999999999999988873
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.25 E-value=73 Score=33.56 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=58.8
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCC-eEEEEEcCCCCEEEEEe--------------CCCcEEEEc
Q 011473 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGP-VKVMRYNPVFDTVISAD--------------DKGIIEYWS 85 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~-V~~l~fspd~~~l~s~s--------------~dg~i~~Wd 85 (485)
+++.+++..+ ..++.+|+- ++.++... +.... =..+..-|+|++|+.+. .|..+ .+|
T Consensus 157 ~nG~ll~~~~--~~~~e~D~~---G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv-evd 230 (477)
T PF05935_consen 157 PNGNLLIGSG--NRLYEIDLL---GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIV-EVD 230 (477)
T ss_dssp TTS-EEEEEB--TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEE-EE-
T ss_pred CCCCEEEecC--CceEEEcCC---CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEE-EEC
Confidence 4566776654 778888884 44444433 31100 13466779999888776 33322 234
Q ss_pred CCCCCCCCceeEEEEcCCCceEEee----------------cCC--ccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 011473 86 PHTLQFPESEVSFRLKSDTNLFEIL----------------KSK--TTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 86 ~~t~~~~~~~~~~~~~~~~~l~~~~----------------~~~--~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~ 146 (485)
.+++ ++|.+.....+-... ... ..++++.+.| ++..++|+-.-..|-..|.++++
T Consensus 231 -~tG~-----vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 231 -PTGE-----VVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp -TTS------EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred -CCCC-----EEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 4443 333333222221000 000 2379999999 55555554445589999999999
Q ss_pred EEEEeccc
Q 011473 147 LRRVYDES 154 (485)
Q Consensus 147 ~~~~~~~~ 154 (485)
+.+.+..+
T Consensus 305 i~Wilg~~ 312 (477)
T PF05935_consen 305 IKWILGPP 312 (477)
T ss_dssp EEEEES-S
T ss_pred EEEEeCCC
Confidence 99998553
No 480
>PHA02713 hypothetical protein; Provisional
Probab=68.23 E-value=41 Score=36.26 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=14.7
Q ss_pred CCCEEEEecCCC---eEEEEcccCe
Q 011473 202 SSNFLIYATLLG---IKIVNLHTNK 223 (485)
Q Consensus 202 ~g~~l~~~s~~~---i~v~d~~tg~ 223 (485)
+|+..+.|+.++ +..+|+.|++
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 577777777665 5666666655
No 481
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=68.04 E-value=27 Score=22.23 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=19.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EeCC--CcEEEE
Q 011473 54 KVHMGPVKVMRYNPVFDTVIS-ADDK--GIIEYW 84 (485)
Q Consensus 54 ~~h~~~V~~l~fspd~~~l~s-~s~d--g~i~~W 84 (485)
......-....|||||+.|+= +..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344456678899999997764 4455 666665
No 482
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.00 E-value=11 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.9
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 128 FSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 128 lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
+..++.|+.|+-.|.+||+.++.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 34458999999999999999998854
No 483
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.26 E-value=2.3e+02 Score=31.37 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=34.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 114 TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
..+..+++||+.++||-...+|.|.+-+....+++..++
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 557889999999999999999999999998888877764
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=63.96 E-value=19 Score=38.63 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=26.1
Q ss_pred CCeEEEEEcC----CCCEEEEEeCCCcEEEEcCCCCCC
Q 011473 58 GPVKVMRYNP----VFDTVISADDKGIIEYWSPHTLQF 91 (485)
Q Consensus 58 ~~V~~l~fsp----d~~~l~s~s~dg~i~~Wd~~t~~~ 91 (485)
..+.+++.++ +..++++.+.|+.+|+||+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3566677777 678999999999999999999776
No 485
>PHA02713 hypothetical protein; Provisional
Probab=63.70 E-value=28 Score=37.53 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=36.4
Q ss_pred CCCEEEEEeCC------CcEEEEcCCC-CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC--cEE
Q 011473 68 VFDTVISADDK------GIIEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR--RIR 138 (485)
Q Consensus 68 d~~~l~s~s~d------g~i~~Wd~~t-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~--~I~ 138 (485)
++++.+.|+.+ ..+..+|+++ .+ |..-. .+.........+++ +|+..++||.|+ .+-
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~-----~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELIT-----TTESRLSALHTILH--DNTIMMLHCYESYMLQD 528 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEcc-----ccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence 46666667654 2356777765 22 22111 12222222333344 789999999888 666
Q ss_pred EEECCCCc
Q 011473 139 VFWFRTGK 146 (485)
Q Consensus 139 iwd~~tg~ 146 (485)
.||+.+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77766654
No 486
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=63.52 E-value=2.7e+02 Score=31.80 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCCcceEEEe-cC---CCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEee
Q 011473 36 FVHIYDARADSNEPLISKK-VH---MGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL 110 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~-~h---~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~ 110 (485)
.++++|-+ +.+.++..+ .- -..|.++.|..| +.+++.| +..+|.-++-......+.|++.....+....
T Consensus 751 ~l~vlD~n--Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG----T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 751 FLRVLDQN--TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG----TGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred EEEEecCC--ceeEEeeccccccceeeeeeeeeecCCCceEEEEE----EEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 46777765 444333222 11 124555668887 4555553 5568844332222334567665444444443
Q ss_pred cC--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 011473 111 KS--KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRR 149 (485)
Q Consensus 111 ~~--~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~ 149 (485)
.+ ++.|.++..- +|+++|. -...||+|+..+++.++
T Consensus 825 e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 825 ETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELR 862 (1096)
T ss_pred eeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceeh
Confidence 33 2445554332 6777764 45789999998886654
No 487
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=63.43 E-value=46 Score=33.16 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=31.5
Q ss_pred CCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCC-cceEEEe----cCCCCeEEEEEcCC
Q 011473 11 PGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSN-EPLISKK----VHMGPVKVMRYNPV 68 (485)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~-~~~~~l~----~h~~~V~~l~fspd 68 (485)
|..+.|. |++.++|+-. .|.|++++.. +.. ..+..+. ........++|+|+
T Consensus 4 P~~~a~~-----pdG~l~v~e~-~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFL-----PDGRLLVAER-SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEE-----TTSCEEEEET-TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEe-----CCCcEEEEeC-CceEEEEeCC-CcCcceecccccccccccCCcccceeccc
Confidence 4555554 4678888875 8999999932 122 2233331 34567899999995
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=63.16 E-value=1.4e+02 Score=28.36 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=28.7
Q ss_pred CceEEECCCCCEEEEecCCCeEEEEcccCeEEEeeccc
Q 011473 194 PSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~ 231 (485)
+--+-.-|+|+.++.+... -.|||..++++++.+..-
T Consensus 172 YP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 172 YPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeCCCC
Confidence 3456678999999888765 568899999988887543
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=62.35 E-value=71 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=24.7
Q ss_pred cEEEEEEcCCCC------EEEEEeCCCcEEEEECCC
Q 011473 115 TVSAIEVSPDGK------QFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 115 ~v~~i~~spdg~------~lat~s~D~~I~iwd~~t 144 (485)
.+.+++|||-|- .||+-..++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 689999999543 678888999999998763
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=62.18 E-value=35 Score=26.68 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.2
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 011473 114 TTVSAIEVSPDGKQFSITS-PDRRIRVFWFR 143 (485)
Q Consensus 114 ~~v~~i~~spdg~~lat~s-~D~~I~iwd~~ 143 (485)
...+.|++|||+++|..++ ..+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4468899999999887666 57899999764
No 491
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=59.86 E-value=42 Score=34.07 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=39.9
Q ss_pred EEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCc
Q 011473 119 IEVSPDGKQFSITSP---DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 195 (485)
Q Consensus 119 i~~spdg~~lat~s~---D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 195 (485)
=+|.+||++|+-+|. ...+.+-|+.+++..+.-++... ...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~------------------------------------~~~ 84 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD------------------------------------NTF 84 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-------------------------------------TT
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC------------------------------------Ccc
Confidence 368999998888775 45677789999987654432100 011
Q ss_pred eEEECCCCCEEEEec-CCCeEEEEcccCeEEEeecc
Q 011473 196 NAIFDESSNFLIYAT-LLGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 196 ~i~fd~~g~~l~~~s-~~~i~v~d~~tg~~v~~~~~ 230 (485)
....+|+++.|.+-. ...+...|+.|.+.-.++.-
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 334567778877754 34588888888775444443
No 492
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=59.07 E-value=2.6e+02 Score=31.49 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=26.1
Q ss_pred CCC---EEEEEeCCCcEEEEECCCCcEEEEecc
Q 011473 124 DGK---QFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 124 dg~---~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
+|+ .++.+++++.+.+.|-+||+.+...++
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 674 788889999999999999999887755
No 493
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.95 E-value=1.3e+02 Score=29.21 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=42.7
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEE
Q 011473 64 RYNPVFDTVISADDK-----GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIR 138 (485)
Q Consensus 64 ~fspd~~~l~s~s~d-----g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~ 138 (485)
.|||||.+|...-.| |.|-++|.... + ..+-++..|.-....+.|.+||+.++.+. |-|+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-f------------qrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIe 184 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-F------------QRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIE 184 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-c------------ceecccccCCcCcceeEEecCCcEEEEeC--Ccee
Confidence 589999988765443 78888887531 1 11223666666678899999999988754 4455
Q ss_pred EE
Q 011473 139 VF 140 (485)
Q Consensus 139 iw 140 (485)
.-
T Consensus 185 th 186 (366)
T COG3490 185 TH 186 (366)
T ss_pred cc
Confidence 55
No 494
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.65 E-value=1.6e+02 Score=28.86 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 011473 110 LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
.+....+.+++|+|+.+.|.+......--||=..+|++++++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP 124 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP 124 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec
Confidence 3445569999999999988888877778888888999999983
No 495
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=58.63 E-value=2.1e+02 Score=29.93 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-----cCCCCeEEEEEcCCC
Q 011473 10 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPVF 69 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~fspd~ 69 (485)
.|..+.| .|++.++|+-...|.|++++........+..+. .-......|+|+|+.
T Consensus 31 ~Pw~maf-----lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLW-----GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEE-----cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3555555 356788888754699999975421222222222 125678999999986
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.24 E-value=1.8e+02 Score=28.84 Aligned_cols=118 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEcCCCCCCCCce-eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC
Q 011473 62 VMRYNPVFDTVISADDK------GIIEYWSPHTLQFPESE-VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 62 ~l~fspd~~~l~s~s~d------g~i~~Wd~~t~~~~~~~-~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D 134 (485)
+|++.+++.+++|.-.+ -.|...+.. ++..... +=-.+.....-..-.......-+++++|||+.|.++.+.
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Q ss_pred C----------------cEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceE
Q 011473 135 R----------------RIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA 197 (485)
Q Consensus 135 ~----------------~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i 197 (485)
. .|.-||..+ ++..+.| .|.++...... ....++.+
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~----------------~y~ld~~~~~~-----------~~~~isd~ 220 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEY----------------AYPLDPPPTAP-----------GDNGISDI 220 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEE----------------EEeCCcccccc-----------CCCCceeE
Q ss_pred EECCCCCEEE
Q 011473 198 IFDESSNFLI 207 (485)
Q Consensus 198 ~fd~~g~~l~ 207 (485)
.+-+++++|+
T Consensus 221 ~al~d~~lLv 230 (326)
T PF13449_consen 221 AALPDGRLLV 230 (326)
T ss_pred EEECCCcEEE
No 497
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.35 E-value=2.3e+02 Score=28.60 Aligned_cols=70 Identities=9% Similarity=0.023 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEcCCC--CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC
Q 011473 59 PVKVMRYNPVFDTVISAD-----------DKG-IIEYWSPHT--LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD 124 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s-----------~dg-~i~~Wd~~t--~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd 124 (485)
....|+|.++|+++++.. ..+ .|.+++-.+ ++.. ....+...-.....+++.++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d------------~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD------------KSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc------------eeEEeecCCCCccceeEecC
Confidence 346788888888777753 122 555553221 2111 11223333345688999999
Q ss_pred CCEEEEEeCCCcEEEEEC
Q 011473 125 GKQFSITSPDRRIRVFWF 142 (485)
Q Consensus 125 g~~lat~s~D~~I~iwd~ 142 (485)
| .+++ +.+...++.|.
T Consensus 83 G-lyV~-~~~~i~~~~d~ 98 (367)
T TIGR02604 83 G-VYVA-TPPDILFLRDK 98 (367)
T ss_pred C-EEEe-CCCeEEEEeCC
Confidence 9 5554 44443444454
No 498
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=56.28 E-value=45 Score=29.72 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011473 116 VSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 116 v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
..+++||.||+. |. ..+..|.|.|..+..
T Consensus 7 ~~~l~WS~Dg~l-aV-~t~~~v~IL~~~~P~ 35 (173)
T PF12657_consen 7 PNALAWSEDGQL-AV-ATGESVHILDPQTPN 35 (173)
T ss_pred CcCeeECCCCCE-EE-EcCCeEEEEeccCCc
Confidence 478999999975 33 345678888655544
No 499
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.01 E-value=1.4e+02 Score=33.18 Aligned_cols=90 Identities=13% Similarity=0.215 Sum_probs=47.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCC
Q 011473 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 193 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~ 193 (485)
.|..|.+||+|+++|..|..+.+-+.=.+. |+. ..+.+....+.|.. +.++ +.-+..+....
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~-~~~~~g~~~i~Crt------~~v~----------~~~~~~~~~~~ 148 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN-GEFEDGKKEINCRT------VPVD----------ERFFTSNSSLE 148 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc-ccccCCCcceeEEE------EEec----------hhhccCCCCce
Confidence 388999999999999999866444432221 110 01111000000000 0000 00111122334
Q ss_pred CceEEECCCC---CEEEEecCCC-eEEEEccc
Q 011473 194 PSNAIFDESS---NFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 194 ~~~i~fd~~g---~~l~~~s~~~-i~v~d~~t 221 (485)
+..+.|+|.+ ..|+.-+.++ +++||+..
T Consensus 149 i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 149 IKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 5678898874 6777777766 99999875
No 500
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=55.83 E-value=1.9e+02 Score=27.63 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=24.9
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe
Q 011473 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK 54 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~ 54 (485)
.-|++... |+..++++.-..+-+++||+ +++.++.+.
T Consensus 57 AIwVh~t~-P~kS~vItt~Kk~Gl~VYDL---sGkqLqs~~ 93 (364)
T COG4247 57 AIWVHATN-PDKSLVITTVKKAGLRVYDL---SGKQLQSVN 93 (364)
T ss_pred ceEeccCC-cCcceEEEeeccCCeEEEec---CCCeeeecC
Confidence 45887654 34445555556677999999 467777775
Done!