BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011474
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 222 ESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTR 281
E + EL++ G+ EG +DL K V+A + + + EFH G I++AK R
Sbjct: 15 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEFH--GDLIEITDAKKR 72
Query: 282 VAI 284
A+
Sbjct: 73 EAL 75
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 352 VLGQRTIERNQLLVSIVKGKLTKQRDDKTGKV--TKPEELVRLY 393
VLG+ E QL+ +KGKLTK DKT V T EELV +Y
Sbjct: 427 VLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMY 470
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 222 ESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTR 281
E + EL++ G+ EG +DL K V+A + + + E+H G I++AK R
Sbjct: 10 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYH--GDLIEITDAKKR 67
Query: 282 VAI 284
A+
Sbjct: 68 EAL 70
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 222 ESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTR 281
E + EL++ G+ EG +DL K V+A + + + E+H G I++AK R
Sbjct: 16 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYH--GDLIEITDAKKR 73
Query: 282 VAI 284
A+
Sbjct: 74 EAL 76
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 222 ESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTR 281
E + EL++ G+ EG +DL K V+A + + + E+H G I++AK R
Sbjct: 15 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYH--GDLIEITDAKKR 72
Query: 282 VAI 284
A+
Sbjct: 73 EAL 75
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 222 ESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTR 281
E + EL++ G+ EG +DL K V+A + + + E+H G I++AK R
Sbjct: 14 EERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYH--GDLIEITDAKKR 71
Query: 282 VAI 284
A+
Sbjct: 72 EAL 74
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 166 LFEQDQNWETALKNFKSARAVYEELGKYGDVENQVL----CRERVEELEPSIRYCLHKIG 221
+F+ W A+ N+K+ V ++ KY ++ L ++E + I +C + +
Sbjct: 153 VFKMMDRWRLAVSNYKNLDKVTLDINKYIQESHKFLKFIKIYTQIENIANDIVFCHNDLQ 212
Query: 222 ESNV-KTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKT 280
E+N+ T++ L++ + E + + + E + ++ + + F I N K
Sbjct: 213 ENNIMNTNKCLRLIDFEYSGYNFLSADIANFFIE-------TTIDYSYNAYPFFIINKKN 265
Query: 281 RVA 283
++
Sbjct: 266 YIS 268
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 32 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 86
Query: 257 S 257
S
Sbjct: 87 S 87
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 32 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 86
Query: 257 S 257
S
Sbjct: 87 S 87
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 31 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 85
Query: 257 S 257
S
Sbjct: 86 S 86
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 31 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 85
Query: 257 S 257
S
Sbjct: 86 S 86
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 35 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 89
Query: 257 S 257
S
Sbjct: 90 S 90
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEG-PALDLFKSKLEAVMAEAR 256
NQ+ +R++ PSI++CL +S V S L G +G P D K LE V E +
Sbjct: 32 NQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHL---GRPDGVPMPD--KYSLEPVAVELK 86
Query: 257 S 257
S
Sbjct: 87 S 87
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 105 HAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAE 155
HA +LPDG + + R+Y+ G R+ K+A N ++A + L E
Sbjct: 190 HACVAPRLPDGTSMKNRLYMNG--REVFKFAVRVMNTATLEAIEKAGLTPE 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,409,326
Number of Sequences: 62578
Number of extensions: 463787
Number of successful extensions: 1378
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1377
Number of HSP's gapped (non-prelim): 22
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)