BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011475
         (485 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana
           GN=At1g16860 PE=1 SV=1
          Length = 474

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/487 (71%), Positives = 402/487 (82%), Gaps = 15/487 (3%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+K
Sbjct: 1   MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSR+GSF G A  SGP  P A  R S S +       ++GS S+KK+NSG
Sbjct: 61  SRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGRMSGSLA-------SAGSVSMKKTNSG 112

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSGAPRKV
Sbjct: 113 PLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKV 168

Query: 181 SGPLDSMGSMK--IPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGF 238
           SGPLDS G MK  +P+ V HNQA+T L  ++DF   ++FPKP+ W ++L+F+MGF+AGGF
Sbjct: 169 SGPLDSSGLMKSHMPTVV-HNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGF 227

Query: 239 ILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 298
           ILGAVHN ILL+VV +LF+ VAALF WN  WGR+ I  +IARYPDA+LR AKNGQ VK++
Sbjct: 228 ILGAVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVT 287

Query: 299 GVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFY 358
           GVVTCGNVPLESSF +VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFY
Sbjct: 288 GVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFY 347

Query: 359 ISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMR 418
           ISDFQSGLRALVKTG GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMR
Sbjct: 348 ISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMR 407

Query: 419 LKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS 478
           LKEGYIKEGSTVSV+GVVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S
Sbjct: 408 LKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSS 467

Query: 479 KNDVIPV 485
             D IPV
Sbjct: 468 NVDAIPV 474


>sp|C4Y5P7|RTC1_CLAL4 Restriction of telomere capping protein 1 OS=Clavispora lusitaniae
           (strain ATCC 42720) GN=RTC1 PE=3 SV=1
          Length = 1158

 Score = 32.3 bits (72), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 8/180 (4%)

Query: 21  EQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGA 80
           E PKE  P  +      +  +   S  L K  D  +D S   +S P +    R  S    
Sbjct: 706 ESPKELNPLSTRRKDSDSKANNADSSALDKPGDKSLDRSALDRSAPTS---FRNKSLLQT 762

Query: 81  ASHSGPIMPNAASR-ASYSTSGPVSSGVTSGSASLKKSNS----GPLNKHGEPLKKSSGP 135
           +    P   N +    +Y     +S+ V+  + S +KS +     P       +  S  P
Sbjct: 763 SDGETPKDNNLSDEIHAYEPRNNLSTKVSLSTMSSQKSKAIDIKAPRRYSNNAMSASMSP 822

Query: 136 QSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSS 195
           +    + S  ++   L+P+   TG   S P SS  L+    P  VSG L S G M  P S
Sbjct: 823 EIFASSESPLKHIAKLSPSRSQTGHSWSIPSSSHDLDDENMPASVSGSLASSGYMGGPDS 882


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,684,864
Number of Sequences: 539616
Number of extensions: 8593969
Number of successful extensions: 29450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 421
Number of HSP's that attempted gapping in prelim test: 27371
Number of HSP's gapped (non-prelim): 1702
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)