Query 011475
Match_columns 485
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 01:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12483 GIDE: E3 Ubiquitin li 99.1 6.1E-10 1.3E-14 100.7 10.4 103 342-451 16-121 (160)
2 PF13829 DUF4191: Domain of un 94.5 0.055 1.2E-06 53.7 5.1 81 215-297 22-105 (224)
3 PF13567 DUF4131: Domain of un 89.9 12 0.00025 32.1 14.3 23 391-413 145-167 (176)
4 PF11151 DUF2929: Protein of u 79.5 4.7 0.0001 32.3 5.1 40 220-260 6-45 (57)
5 PRK13254 cytochrome c-type bio 77.2 11 0.00023 35.5 7.5 15 290-304 49-63 (148)
6 cd06094 RP_Saci_like RP_Saci_l 76.8 2.2 4.8E-05 37.2 2.7 25 357-381 1-25 (89)
7 COG1200 RecG RecG-like helicas 74.9 11 0.00025 43.0 8.3 48 419-466 104-152 (677)
8 PF12273 RCR: Chitin synthesis 74.7 2.1 4.6E-05 38.2 2.1 21 245-265 1-21 (130)
9 PF04246 RseC_MucC: Positive r 73.4 5.2 0.00011 35.7 4.3 42 227-268 76-117 (135)
10 COG3346 Uncharacterized conser 65.6 1.5E+02 0.0033 30.4 13.1 146 244-459 12-171 (252)
11 PF13779 DUF4175: Domain of un 59.0 16 0.00036 42.5 5.7 60 222-281 10-71 (820)
12 PRK01844 hypothetical protein; 55.9 19 0.0004 30.7 4.0 34 247-285 7-40 (72)
13 PF08114 PMP1_2: ATPase proteo 55.5 12 0.00026 29.0 2.6 27 251-277 16-43 (43)
14 PRK00523 hypothetical protein; 54.8 20 0.00043 30.5 4.0 35 246-285 7-41 (72)
15 PF11241 DUF3043: Protein of u 54.5 29 0.00062 33.6 5.6 39 254-292 107-145 (170)
16 PF10003 DUF2244: Integral mem 52.8 28 0.0006 31.8 5.0 62 218-299 9-70 (140)
17 PF11292 DUF3093: Protein of u 51.8 35 0.00075 32.2 5.6 52 211-265 3-54 (143)
18 PRK14762 membrane protein; Pro 50.2 15 0.00032 25.9 2.1 16 219-234 2-17 (27)
19 PF11833 DUF3353: Protein of u 49.4 22 0.00048 34.6 4.1 32 214-246 136-167 (194)
20 PF06645 SPC12: Microsomal sig 48.6 20 0.00043 30.1 3.2 59 219-280 11-69 (76)
21 PRK13823 conjugal transfer pro 48.6 25 0.00053 31.0 3.8 38 227-265 25-62 (94)
22 PF11712 Vma12: Endoplasmic re 47.6 50 0.0011 30.1 5.8 50 222-271 86-137 (142)
23 PF06679 DUF1180: Protein of u 47.3 16 0.00035 35.0 2.7 31 250-281 99-129 (163)
24 PF05915 DUF872: Eukaryotic pr 47.2 25 0.00054 31.8 3.7 54 219-272 41-105 (115)
25 TIGR02762 TraL_TIGR type IV co 47.1 35 0.00075 29.6 4.5 22 217-238 18-39 (95)
26 PF03100 CcmE: CcmE; InterPro 46.7 17 0.00036 32.9 2.6 16 290-305 48-63 (131)
27 PF04156 IncA: IncA protein; 46.1 36 0.00079 31.6 4.8 32 237-268 30-61 (191)
28 KOG1571 Predicted E3 ubiquitin 44.1 85 0.0018 33.7 7.6 145 295-450 60-211 (355)
29 PRK10881 putative hydrogenase 43.3 36 0.00079 35.8 4.8 37 198-243 39-77 (394)
30 PRK08456 flagellar motor prote 43.1 40 0.00087 33.8 4.9 45 236-280 24-69 (257)
31 PF11023 DUF2614: Protein of u 43.1 51 0.0011 30.3 5.0 48 218-265 9-57 (114)
32 PF05425 CopD: Copper resistan 43.1 48 0.001 28.3 4.7 58 217-274 7-69 (105)
33 TIGR03750 conj_TIGR03750 conju 42.4 63 0.0014 29.4 5.5 46 222-268 24-69 (111)
34 PF06374 NDUF_C2: NADH-ubiquin 41.9 61 0.0013 29.8 5.4 57 226-283 29-96 (117)
35 PTZ00382 Variant-specific surf 41.7 10 0.00022 33.1 0.4 17 256-272 79-95 (96)
36 PF11808 DUF3329: Domain of un 41.1 1.4E+02 0.003 25.4 7.2 51 222-282 9-59 (90)
37 PRK10862 SoxR reducing system 41.1 30 0.00066 32.3 3.5 37 232-268 88-124 (154)
38 PRK09109 motC flagellar motor 40.8 48 0.001 33.1 5.0 54 227-280 9-69 (246)
39 PRK13165 cytochrome c-type bio 40.8 53 0.0011 31.6 5.0 16 290-305 55-70 (160)
40 PF01102 Glycophorin_A: Glycop 39.0 36 0.00079 31.2 3.6 17 276-292 89-105 (122)
41 PF10907 DUF2749: Protein of u 39.0 17 0.00037 30.5 1.3 47 247-295 4-62 (66)
42 COG5015 Uncharacterized conser 38.1 37 0.00079 31.8 3.4 35 271-305 46-81 (132)
43 PF11846 DUF3366: Domain of un 37.0 99 0.0021 28.7 6.2 57 222-278 20-83 (193)
44 PF15050 SCIMP: SCIMP protein 36.7 40 0.00087 31.5 3.4 23 246-268 9-31 (133)
45 PF00924 MS_channel: Mechanose 36.3 25 0.00053 32.5 2.1 14 287-300 59-72 (206)
46 PRK13150 cytochrome c-type bio 36.1 68 0.0015 30.8 5.0 17 289-305 54-70 (159)
47 TIGR01116 ATPase-IIA1_Ca sarco 35.7 82 0.0018 36.9 6.5 80 217-297 5-86 (917)
48 COG2332 CcmE Cytochrome c-type 35.4 60 0.0013 31.2 4.5 54 245-304 8-63 (153)
49 PF04790 Sarcoglycan_1: Sarcog 35.3 5.1E+02 0.011 26.6 13.8 88 350-447 113-220 (264)
50 COG3763 Uncharacterized protei 35.3 58 0.0013 27.7 3.9 19 266-284 21-39 (71)
51 PF14362 DUF4407: Domain of un 34.7 49 0.0011 33.2 4.0 16 252-267 47-62 (301)
52 KOG4050 Glutamate transporter 34.6 74 0.0016 31.2 5.0 56 226-287 59-114 (188)
53 PF11990 DUF3487: Protein of u 34.4 73 0.0016 29.1 4.7 43 222-265 27-69 (121)
54 PRK10917 ATP-dependent DNA hel 34.3 1.2E+02 0.0027 34.2 7.5 29 421-449 105-133 (681)
55 PF03419 Peptidase_U4: Sporula 34.3 2.2E+02 0.0047 28.8 8.5 44 284-328 158-201 (293)
56 PF01925 TauE: Sulfite exporte 33.9 61 0.0013 30.5 4.4 41 216-256 60-100 (240)
57 KOG1016 Predicted DNA helicase 33.7 21 0.00045 42.3 1.4 16 7-22 1199-1214(1387)
58 PRK09110 flagellar motor prote 33.6 65 0.0014 33.2 4.7 52 228-279 8-66 (283)
59 cd04488 RecG_wedge_OBF RecG_we 33.3 75 0.0016 23.9 4.0 27 423-449 45-71 (75)
60 PF10112 Halogen_Hydrol: 5-bro 33.0 59 0.0013 30.8 4.1 32 217-248 4-35 (199)
61 PRK08124 flagellar motor prote 32.2 81 0.0018 31.9 5.1 32 239-270 27-58 (263)
62 TIGR02302 aProt_lowcomp conser 31.6 68 0.0015 37.9 5.0 26 431-456 291-316 (851)
63 PRK12872 ubiA prenyltransferas 31.6 67 0.0014 31.6 4.4 34 219-252 77-110 (285)
64 PF12676 DUF3796: Protein of u 31.5 73 0.0016 28.9 4.2 56 212-268 50-106 (118)
65 COG4965 TadB Flp pilus assembl 30.9 85 0.0018 33.1 5.1 23 271-293 128-153 (309)
66 PF06703 SPC25: Microsomal sig 30.7 1.7E+02 0.0038 26.9 6.7 49 244-298 55-103 (162)
67 PF01988 VIT1: VIT family; In 30.2 81 0.0017 30.4 4.6 17 222-238 131-147 (213)
68 TIGR03818 MotA1 flagellar moto 30.2 83 0.0018 32.3 4.8 43 227-269 7-55 (282)
69 TIGR03428 ureacarb_perm permea 29.9 57 0.0012 34.4 3.8 32 200-232 230-261 (475)
70 PF09788 Tmemb_55A: Transmembr 29.7 43 0.00093 34.4 2.7 70 198-270 182-251 (256)
71 PRK06743 flagellar motor prote 29.7 80 0.0017 32.1 4.6 28 243-270 28-55 (254)
72 PF02439 Adeno_E3_CR2: Adenovi 29.5 81 0.0017 24.0 3.4 25 247-271 8-32 (38)
73 PF03916 NrfD: Polysulphide re 29.2 81 0.0018 31.6 4.5 33 202-243 2-34 (313)
74 PRK10490 sensor protein KdpD; 28.6 38 0.00083 39.4 2.4 14 255-268 449-462 (895)
75 TIGR00643 recG ATP-dependent D 28.5 1.9E+02 0.0041 32.4 7.6 27 423-449 80-106 (630)
76 PF04971 Lysis_S: Lysis protei 28.3 67 0.0014 27.2 3.1 32 246-278 33-64 (68)
77 PRK14585 pgaD putative PGA bio 27.9 91 0.002 29.5 4.3 54 214-268 10-74 (137)
78 PF09991 DUF2232: Predicted me 27.8 1.1E+02 0.0025 29.4 5.1 22 217-238 202-223 (290)
79 PRK12482 flagellar motor prote 27.3 1E+02 0.0022 32.0 4.9 44 226-269 6-55 (287)
80 PRK10747 putative protoheme IX 27.0 1.4E+02 0.0031 31.0 6.0 9 238-246 27-35 (398)
81 PRK13707 conjugal transfer pil 27.0 91 0.002 27.6 3.9 17 272-288 81-98 (101)
82 PRK14992 tetrathionate reducta 26.9 83 0.0018 33.2 4.3 23 222-244 16-38 (335)
83 COG1585 Membrane protein impli 26.7 2.3E+02 0.0049 26.4 6.6 24 221-244 6-31 (140)
84 PRK07118 ferredoxin; Validated 26.4 38 0.00082 34.5 1.7 26 220-245 3-28 (280)
85 COG0811 TolQ Biopolymer transp 26.4 63 0.0014 31.6 3.1 24 248-271 167-190 (216)
86 TIGR01944 rnfB electron transp 26.3 37 0.0008 31.6 1.5 22 221-242 2-23 (165)
87 PF04304 DUF454: Protein of un 25.7 1.4E+02 0.0029 23.9 4.4 45 211-257 18-62 (71)
88 PF14023 DUF4239: Protein of u 25.4 1.6E+02 0.0034 27.9 5.5 12 214-226 132-143 (209)
89 PF00558 Vpu: Vpu protein; In 24.8 75 0.0016 27.6 2.9 23 245-267 3-25 (81)
90 PF05090 VKG_Carbox: Vitamin K 24.3 79 0.0017 34.4 3.7 35 337-372 332-367 (446)
91 PF11432 DUF3197: Protein of u 24.2 53 0.0012 30.1 2.0 61 355-430 17-87 (113)
92 PF05961 Chordopox_A13L: Chord 24.2 93 0.002 26.4 3.2 23 251-273 6-28 (68)
93 PRK01844 hypothetical protein; 24.1 52 0.0011 28.1 1.8 16 222-237 3-18 (72)
94 PF06305 DUF1049: Protein of u 23.9 48 0.001 25.9 1.5 28 217-244 16-43 (68)
95 COG5605 Predicted small integr 23.8 98 0.0021 28.0 3.5 34 220-253 47-83 (115)
96 cd04486 YhcR_OBF_like YhcR_OBF 23.7 1.1E+02 0.0025 25.4 3.8 27 423-449 44-70 (78)
97 PRK13159 cytochrome c-type bio 23.7 1E+02 0.0022 29.5 3.9 17 289-305 48-64 (155)
98 TIGR03141 cytochro_ccmD heme e 23.4 1.4E+02 0.003 22.7 3.9 23 259-281 18-40 (45)
99 COG5336 Uncharacterized protei 23.4 49 0.0011 30.5 1.6 17 223-239 75-91 (116)
100 PF01957 NfeD: NfeD-like C-ter 23.3 70 0.0015 27.7 2.5 11 288-298 87-97 (144)
101 PRK01122 potassium-transportin 23.0 2.8E+02 0.006 32.1 7.7 30 201-236 21-50 (679)
102 PF11239 DUF3040: Protein of u 22.9 1.3E+02 0.0029 25.1 4.0 6 218-223 39-44 (82)
103 PRK10621 hypothetical protein; 22.8 1.4E+02 0.0031 29.3 4.9 46 210-255 68-113 (266)
104 PRK10847 hypothetical protein; 22.7 1.8E+02 0.0038 28.3 5.4 16 221-237 165-180 (219)
105 TIGR00906 2A0303 cationic amin 22.6 1.2E+02 0.0026 33.4 4.7 36 200-236 248-283 (557)
106 COG1585 Membrane protein impli 22.3 2.5E+02 0.0054 26.1 6.0 7 356-362 124-130 (140)
107 PF12273 RCR: Chitin synthesis 22.3 63 0.0014 28.9 2.1 12 254-265 6-17 (130)
108 PF05879 RHD3: Root hair defec 22.3 87 0.0019 36.2 3.7 46 215-263 644-689 (742)
109 TIGR00267 conserved hypothetic 22.3 1.4E+02 0.0031 28.2 4.5 8 229-236 95-102 (169)
110 KOG3675 Dipeptidyl peptidase I 22.2 46 0.001 36.0 1.4 119 343-471 259-391 (417)
111 PF05545 FixQ: Cbb3-type cytoc 22.1 1.6E+02 0.0034 22.4 4.0 33 249-281 12-44 (49)
112 PF14110 DUF4282: Domain of un 22.1 1.8E+02 0.004 24.7 4.8 48 219-268 15-69 (90)
113 PF03672 UPF0154: Uncharacteri 22.1 1.1E+02 0.0023 25.6 3.2 30 249-283 2-31 (64)
114 TIGR01523 ATPase-IID_K-Na pota 22.1 1.4E+02 0.0031 35.8 5.5 50 244-294 79-128 (1053)
115 PRK10755 sensor protein BasS/P 22.0 2.1E+02 0.0045 28.3 5.8 19 222-240 9-27 (356)
116 PF02535 Zip: ZIP Zinc transpo 22.0 1.1E+02 0.0023 30.1 3.8 10 230-239 244-253 (317)
117 PRK12869 ubiA protoheme IX far 21.9 1.8E+02 0.004 29.1 5.5 42 248-293 38-79 (279)
118 KOG2927 Membrane component of 21.7 2E+02 0.0044 31.1 5.9 57 216-273 185-255 (372)
119 COG1463 Ttg2C ABC-type transpo 21.3 91 0.002 32.4 3.3 18 284-301 48-65 (359)
120 PRK08990 flagellar motor prote 21.2 1.9E+02 0.0041 29.3 5.5 38 231-268 18-55 (254)
121 COG1291 MotA Flagellar motor c 21.2 78 0.0017 32.7 2.7 52 236-287 24-76 (266)
122 PRK05113 electron transport co 21.2 56 0.0012 31.4 1.7 20 220-239 3-22 (191)
123 PRK13387 1,4-dihydroxy-2-napht 20.9 99 0.0022 31.9 3.5 33 218-251 87-119 (317)
124 TIGR00751 menA 1,4-dihydroxy-2 20.9 1.1E+02 0.0024 31.1 3.7 24 218-241 76-99 (284)
125 PF06609 TRI12: Fungal trichot 20.7 1E+02 0.0022 35.0 3.7 60 221-280 239-308 (599)
126 PRK10714 undecaprenyl phosphat 20.6 1.5E+02 0.0032 30.2 4.6 18 224-241 237-254 (325)
127 COG3601 Predicted membrane pro 20.4 1.3E+02 0.0028 29.8 3.9 51 221-273 40-105 (186)
128 PHA03049 IMV membrane protein; 20.1 1.1E+02 0.0023 26.0 2.8 22 252-273 7-28 (68)
No 1
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=99.09 E-value=6.1e-10 Score=100.71 Aligned_cols=103 Identities=22% Similarity=0.373 Sum_probs=71.4
Q ss_pred ceeeeeeeeceeeeeeEEecCCCceeEEE-ecCCCceeeeeeccceeeec-CCCCCCCCHHHHHHHHhcCCCCCCceeEE
Q 011475 342 RFTWGLRSLERRAVDFYISDFQSGLRALV-KTGYGARVTPYVDDSLAIDV-NPGKEELSPEFIRWLAERNLSSDDRIMRL 419 (485)
Q Consensus 342 r~~W~l~~~Er~~~dFyIsD~~sG~RALV-kaG~GarV~P~Vees~VvD~-~~~~kd~S~el~~wL~ernLSsd~r~mRy 419 (485)
...|++++.++..++|||.|.+ | +.+| ....++.+. -.++.|. .+........+..|+...- ..+.+.+||
T Consensus 16 ~~~~~~v~~~~~~vPF~L~D~t-g-~v~V~~~p~~a~l~----l~~v~~~f~p~~~~~~~~~~~~~~~~~-~~~~~G~r~ 88 (160)
T PF12483_consen 16 SSSWRTVSSGTSEVPFYLEDGT-G-RVRVVDDPEGAELD----LETVYDRFEPSPSSPPDGLFGFFSGER-ELEPKGYRY 88 (160)
T ss_pred cccEEEEEcceeEcCEEEECCc-e-EEEEecCcccCccc----eeeEEEEeEECCCCccceeeeeeccce-eccccccEE
Confidence 4569999999999999999975 4 5666 445566643 2355553 2332223333333332222 112677999
Q ss_pred EeeeccCCCEEEEEEEE-EecCceeeEeCCCCc
Q 011475 420 KEGYIKEGSTVSVMGVV-QRNDNVLMIVPPPEP 451 (485)
Q Consensus 420 kEgiI~eGs~VsVmGvv-~r~~~vlmI~pP~E~ 451 (485)
+|++|++|++|+|+|.+ .++++.++|.+|.+.
T Consensus 89 ~E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g 121 (160)
T PF12483_consen 89 TEEILPVGTPLTVVGELVRDGDGNLVIQPPKDG 121 (160)
T ss_pred EEEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCC
Confidence 99999999999999999 667789999999987
No 2
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=94.51 E-value=0.055 Score=53.65 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=62.5
Q ss_pred cCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCcc---ccccCCC
Q 011475 215 RNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDA---ELRNAKN 291 (485)
Q Consensus 215 ~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds---~l~sa~d 291 (485)
+..|+ +.|.+++.|+..++++..|-..+++|+++++++.++++++|.+++... ..++..+.+..-|-+ -|++++-
T Consensus 22 k~dp~-l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rr-a~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 22 KEDPK-LPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRR-AQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred HHCcc-hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHhhcC
Confidence 33454 478888888888888888888888999999999999999988888443 466678888887776 5677888
Q ss_pred CCEEEE
Q 011475 292 GQFVKI 297 (485)
Q Consensus 292 Gq~VKI 297 (485)
|..++=
T Consensus 100 ~W~~~~ 105 (224)
T PF13829_consen 100 GWRVTE 105 (224)
T ss_pred CcccCC
Confidence 876653
No 3
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=89.88 E-value=12 Score=32.07 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=16.4
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCC
Q 011475 391 NPGKEELSPEFIRWLAERNLSSD 413 (485)
Q Consensus 391 ~~~~kd~S~el~~wL~ernLSsd 413 (485)
.+..+.-..+.++|+..+|+...
T Consensus 145 ~~~~Npg~FD~~~yl~~~gI~~~ 167 (176)
T PF13567_consen 145 SGPTNPGGFDYQRYLRSKGIYAQ 167 (176)
T ss_pred CCCCCCCCcCHHHHHHHCCCEEE
Confidence 33335667778999999996554
No 4
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=79.54 E-value=4.7 Score=32.27 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHH
Q 011475 220 PIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVA 260 (485)
Q Consensus 220 ~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~va 260 (485)
.+.|++++..++|++++++-=+.. |...-.++.++|+.++
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~~-n~~~~~Ii~vi~~i~~ 45 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVTY-NFTTAAIIAVIFGIIV 45 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHH
Confidence 468999999999999999876643 3443344444444444
No 5
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=77.19 E-value=11 Score=35.47 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.9
Q ss_pred CCCCEEEEEEEEEeC
Q 011475 290 KNGQFVKISGVVTCG 304 (485)
Q Consensus 290 ~dGq~VKItGvVtCG 304 (485)
..|+.|+|.|.|.-|
T Consensus 49 ~~g~~vrvgG~V~~g 63 (148)
T PRK13254 49 PAGRRFRLGGLVEKG 63 (148)
T ss_pred cCCCeEEEeEEEecC
Confidence 569999999999874
No 6
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=76.80 E-value=2.2 Score=37.23 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=21.7
Q ss_pred eEEecCCCceeEEEecCCCceeeee
Q 011475 357 FYISDFQSGLRALVKTGYGARVTPY 381 (485)
Q Consensus 357 FyIsD~~sG~RALVkaG~GarV~P~ 381 (485)
|||.|.++|+++||++|..--|-|.
T Consensus 1 l~v~D~~s~~~fLVDTGA~vSviP~ 25 (89)
T cd06094 1 LHVRDRTSGLRFLVDTGAAVSVLPA 25 (89)
T ss_pred CeeEECCCCcEEEEeCCCceEeecc
Confidence 7999999999999999988666554
No 7
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=74.85 E-value=11 Score=42.96 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=36.7
Q ss_pred EEeeeccCCCEEEEEEEEEecCceeeEeCCCCccccccc-eeeeecccc
Q 011475 419 LKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQ-WAKCIVPAS 466 (485)
Q Consensus 419 ykEgiI~eGs~VsVmGvv~r~~~vlmI~pP~E~~stgcq-w~r~~lP~~ 466 (485)
|-+..+++|++|.|.|.+++..+.+-|.-|.=.+...+. ..+.+.|+|
T Consensus 104 ~l~~~~~~G~~v~v~Gk~~~~~~~~~~~hpe~~~~~~~~~~~~~i~PvY 152 (677)
T COG1200 104 YLKKKLKVGERVIVYGKVKRFKGGLQITHPEYIVNDDGSELEERLTPVY 152 (677)
T ss_pred HHHhhCCCCCEEEEEEEEeeccCceEEEcceEEecCCCcccccceeeee
Confidence 445678899999999999998888888877666655444 567777775
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=74.69 E-value=2.1 Score=38.25 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 011475 245 NAILLIVVVVLFSCVAALFGW 265 (485)
Q Consensus 245 ~~~ll~~~~~lfa~vaa~~iW 265 (485)
+|+|+++++++|.+++.+++|
T Consensus 1 RW~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH
Confidence 466766666666555555555
No 9
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=73.40 E-value=5.2 Score=35.71 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 227 LLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 227 ~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
++=.++|++|+++..++-...++.+++++.++++++++..++
T Consensus 76 ~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~ 117 (135)
T PF04246_consen 76 LLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLF 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777777668888888888888777666555
No 10
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=65.57 E-value=1.5e+02 Score=30.41 Aligned_cols=146 Identities=22% Similarity=0.327 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh---hhhhchhhH--hhhhhcCCccccccCCCC-------CE--EEEEEEEEeCCcccc
Q 011475 244 HNAILLIVVVVLFSCVAALFGW---NTFWGRKAI--ISYIARYPDAELRNAKNG-------QF--VKISGVVTCGNVPLE 309 (485)
Q Consensus 244 ~~~~ll~~~~~lfa~vaa~~iW---n~~~~~r~l--~Rfl~r~Pds~l~sa~dG-------q~--VKItGvVtCG~~PL~ 309 (485)
.+++++++++++|++.+++=.| +..|..+-+ +..-...|-..+...-+- || |+++|+---
T Consensus 12 ~~~~l~~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~------ 85 (252)
T COG3346 12 WLALLLLLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLH------ 85 (252)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcC------
Confidence 4567777888888888888889 333443322 333344555555443333 44 777776422
Q ss_pred cccCCCcceEEEEEEEEEeecCCcccCCCCCcceeeeeeeeceeeeeeEEecCCCceeEEEecCCCceeeeeeccceeee
Q 011475 310 SSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAID 389 (485)
Q Consensus 310 Aplskr~rCVYYst~L~EYrg~~~K~an~~h~r~~W~l~~~Er~~~dFyIsD~~sG~RALVkaG~GarV~P~Vees~VvD 389 (485)
+.+.=+|+.+.- +.+.. +-.++|+..| |...||..| .|
T Consensus 86 ----~~e~l~~~r~~~----------g~~Gy-----------~VlTPf~~~d---G~~VLVnRG---~v----------- 123 (252)
T COG3346 86 ----DKEVLLYARVTE----------GGPGY-----------EVLTPFALDD---GRTVLVNRG---FV----------- 123 (252)
T ss_pred ----CceEEEeeeeec----------CCccE-----------EEecccEecC---CcEEEEeCC---cc-----------
Confidence 232222322100 11111 2458888886 556677655 21
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCCceeEEEeeeccCCCEEEEEEEEEecCceeeEeCCCCcccccccee
Q 011475 390 VNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWA 459 (485)
Q Consensus 390 ~~~~~kd~S~el~~wL~ernLSsd~r~mRykEgiI~eGs~VsVmGvv~r~~~vlmI~pP~E~~stgcqw~ 459 (485)
..++++.++.. |+-+. ..|.|.|.+..++......|..++-...++|.
T Consensus 124 -p~e~~~~~~r~-------------------~~~~~--g~v~I~Gl~r~~e~~~~~l~~nd~~~~~~y~~ 171 (252)
T COG3346 124 -PRERKEASPRA-------------------EGQPA--GPVTITGLLRPPEPGGSLLPDNDPGKNLWYSI 171 (252)
T ss_pred -cCcccCCCCCC-------------------CCCCC--CcEEEEEEEecCCCccccCcccCcccCeeeec
Confidence 22223333211 22222 56788888887777766666666655554443
No 11
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=59.01 E-value=16 Score=42.52 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhheeehe-ehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhhHhhhhhcC
Q 011475 222 FWSLILLFVMGFIAGGFILGA-VHNAILLIVVVVLFSCVAALFGWNTFWG-RKAIISYIARY 281 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~a-v~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~l~Rfl~r~ 281 (485)
+|+|+.+|+.-..+|.|-+.. +-.|++|+++++++++.+..-+|++-|- +.++++.|.+.
T Consensus 10 ~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrfr~Pt~~ea~~RLe~~ 71 (820)
T PF13779_consen 10 LLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRFRWPTRAEALRRLERA 71 (820)
T ss_pred HHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhh
Confidence 566777777777777776553 2334444443333333333334444444 55567776654
No 12
>PRK01844 hypothetical protein; Provisional
Probab=55.88 E-value=19 Score=30.69 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccc
Q 011475 247 ILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAE 285 (485)
Q Consensus 247 ~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~ 285 (485)
|+|++++.+.+++.++ |.+|+-.+.+|++.|-.+
T Consensus 7 I~l~I~~li~G~~~Gf-----f~ark~~~k~lk~NPpin 40 (72)
T PRK01844 7 ILVGVVALVAGVALGF-----FIARKYMMNYLQKNPPIN 40 (72)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCC
Confidence 3444444444444443 345666788888887543
No 13
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=55.51 E-value=12 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhhhhc-hhhHhhh
Q 011475 251 VVVVLFSCVAALFGWNTFWG-RKAIISY 277 (485)
Q Consensus 251 ~~~~lfa~vaa~~iWn~~~~-~r~l~Rf 277 (485)
.|..+-+.++++|+|+-|.. ++++.||
T Consensus 16 lVglv~i~iva~~iYRKw~aRkr~l~rf 43 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKWQARKRALQRF 43 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444455667899988755 5556665
No 14
>PRK00523 hypothetical protein; Provisional
Probab=54.78 E-value=20 Score=30.53 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccc
Q 011475 246 AILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAE 285 (485)
Q Consensus 246 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~ 285 (485)
||+|++++.+.+++.++ |.+|+-.+.+|++.|-.+
T Consensus 7 ~I~l~i~~li~G~~~Gf-----fiark~~~k~l~~NPpin 41 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGY-----FVSKKMFKKQIRENPPIT 41 (72)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCcCCC
Confidence 34444444444444444 445666788888877643
No 15
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=54.47 E-value=29 Score=33.63 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCC
Q 011475 254 VLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNG 292 (485)
Q Consensus 254 ~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dG 292 (485)
++.+++++++|-.++.+++.-.+-..++|+++-....-|
T Consensus 107 ~~~~~~~~~iid~~~l~r~vkk~v~~kFp~~~~~~~gl~ 145 (170)
T PF11241_consen 107 AMYVLLLLVIIDGVILGRRVKKRVAEKFPDTTESGRGLG 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCcchh
Confidence 333344444444444444444566667888554443333
No 16
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=52.76 E-value=28 Score=31.79 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCEEEE
Q 011475 218 PKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKI 297 (485)
Q Consensus 218 p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~VKI 297 (485)
|+..+|+++.++++-++++.+++.. -.|.+|..++.-++++..+|-+|+. .+.+.|.+.|
T Consensus 9 ~~g~~~~~~~~~~~~~~~a~~f~~~-GaW~Vl~F~glev~~l~~a~~~~~r-------------------~~~~~E~I~l 68 (140)
T PF10003_consen 9 PRGFLIFIAILAAVSLIIAIAFLLM-GAWPVLPFAGLEVLALWYAFRRNYR-------------------HARDYERITL 68 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHHh-------------------hCcCcEEEEE
Confidence 5666777777777765444333322 2266666665555555555555442 2456677777
Q ss_pred EE
Q 011475 298 SG 299 (485)
Q Consensus 298 tG 299 (485)
+.
T Consensus 69 ~~ 70 (140)
T PF10003_consen 69 SP 70 (140)
T ss_pred eC
Confidence 77
No 17
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=51.78 E-value=35 Score=32.18 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=28.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhh
Q 011475 211 FDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGW 265 (485)
Q Consensus 211 ~~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iW 265 (485)
|+=|.-.|.- .|.+.+++ .|+++..+.+..-.-+.. +++++++++++++++|
T Consensus 3 Y~ERL~~p~~-wW~~~~~~-~~~~~~~v~~~~~~~~~~-i~~~~~~~~~~~~l~~ 54 (143)
T PF11292_consen 3 YRERLWVPWW-WWLAAAAV-AALLAAEVVLGPPSLWAW-IPYAVVVAVAVWALLS 54 (143)
T ss_pred cccccCCCHH-HHHHHHHH-HHHHHHhhhcCcchHHHH-HHHHHHHHHHHHHHHH
Confidence 6667666665 55555444 677777777655544444 4444444444434444
No 18
>PRK14762 membrane protein; Provisional
Probab=50.20 E-value=15 Score=25.88 Aligned_cols=16 Identities=31% Similarity=1.140 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHh
Q 011475 219 KPIFWSLILLFVMGFI 234 (485)
Q Consensus 219 ~~~~~~~~~~~~~g~~ 234 (485)
|.++|++..+|.+|++
T Consensus 2 ki~lw~i~iifligll 17 (27)
T PRK14762 2 KIILWAVLIIFLIGLL 17 (27)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 5689999999999965
No 19
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=49.42 E-value=22 Score=34.62 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=25.2
Q ss_pred ccCCChhhHHHHHHHHHHHHhhhheeeheehhh
Q 011475 214 KRNFPKPIFWSLILLFVMGFIAGGFILGAVHNA 246 (485)
Q Consensus 214 ~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~ 246 (485)
.++|=|+++|.+..| ++|+++|+++...+...
T Consensus 136 ~~~~~rA~~~~~~~L-~~G~~lGs~l~~~l~~~ 167 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGL-VVGLILGSLLASWLPVD 167 (194)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHhhcccc
Confidence 345779999999887 78999999987766443
No 20
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=48.63 E-value=20 Score=30.07 Aligned_cols=59 Identities=15% Similarity=0.382 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhc
Q 011475 219 KPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIAR 280 (485)
Q Consensus 219 ~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r 280 (485)
+..-+.+++.+++||++| |++--++..+...+++.++++++.+=-|-+| +|.=++++..
T Consensus 11 ~l~~~il~~~~iisfi~G-y~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y--~r~p~~W~~~ 69 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVG-YITQSFSYTFYIYGAGVVLTLLVVVPPWPFY--NRHPLKWLPP 69 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhheeCCcHhh--cCCcccCCCC
Confidence 344566677777778776 5667777777777777777777777778776 3444455443
No 21
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=48.60 E-value=25 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=23.8
Q ss_pred HHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhh
Q 011475 227 LLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGW 265 (485)
Q Consensus 227 ~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iW 265 (485)
++++.|+++++++++. ++|+-.++.+++..+...++.|
T Consensus 25 l~i~~g~la~~l~~g~-~~~~a~~~gl~lw~v~h~~l~~ 62 (94)
T PRK13823 25 LVMFSGLLAGILIFVA-QTWRAALFGIALWFGALFALRL 62 (94)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888877776 7776444445554555555666
No 22
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=47.57 E-value=50 Score=30.12 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH-hhhhee-eheehhhHHHHHHHHHHHHHHHHHhhhhhhch
Q 011475 222 FWSLILLFVMGF-IAGGFI-LGAVHNAILLIVVVVLFSCVAALFGWNTFWGR 271 (485)
Q Consensus 222 ~~~~~~~~~~g~-~~g~f~-l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~ 271 (485)
+-.++..|+.|+ .++... -.-.+.=++|-+++++++++|=+.+++.|..+
T Consensus 86 lvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 86 LVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555554 333222 23445557777777777777777777777554
No 23
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=47.29 E-value=16 Score=34.99 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHhhhhhcC
Q 011475 250 IVVVVLFSCVAALFGWNTFWGRKAIISYIARY 281 (485)
Q Consensus 250 ~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~ 281 (485)
+|++++.+++++.|++++|+-|| -.|+.|||
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~-~~rktRkY 129 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRR-RNRKTRKY 129 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccccceee
Confidence 45666777778888888885554 22334444
No 24
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=47.16 E-value=25 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHH---Hhhhheeehee------hhhHHHHHHHHHHHHHH--HHHhhhhhhchh
Q 011475 219 KPIFWSLILLFVMG---FIAGGFILGAV------HNAILLIVVVVLFSCVA--ALFGWNTFWGRK 272 (485)
Q Consensus 219 ~~~~~~~~~~~~~g---~~~g~f~l~av------~~~~ll~~~~~lfa~va--a~~iWn~~~~~r 272 (485)
.-.++..++||++| +++|.+++..- |.+.+|++-+.+|+..+ ..++|.+|.+++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~ 105 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 44566666777777 45566665543 56777776666665543 334454444443
No 25
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=47.09 E-value=35 Score=29.60 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=12.4
Q ss_pred CChhhHHHHHHHHHHHHhhhhe
Q 011475 217 FPKPIFWSLILLFVMGFIAGGF 238 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f 238 (485)
++---+-++++.|++|+++|-+
T Consensus 18 ~t~DE~i~~~~~~~~Gi~~~~~ 39 (95)
T TIGR02762 18 LPLDEFLPGATLFGIGILSGKA 39 (95)
T ss_pred eeHHHHHHHHHHHHHHHHHhhH
Confidence 4555454555566666666543
No 26
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=46.71 E-value=17 Score=32.90 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.1
Q ss_pred CCCCEEEEEEEEEeCC
Q 011475 290 KNGQFVKISGVVTCGN 305 (485)
Q Consensus 290 ~dGq~VKItGvVtCG~ 305 (485)
..|+.|+|.|.|.-|+
T Consensus 48 ~~~~~vrv~G~V~~gS 63 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGS 63 (131)
T ss_dssp -TTSEEEEEEEEECTT
T ss_pred cCCceEEEeeEEccCC
Confidence 4899999999998744
No 27
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.06 E-value=36 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.033 Sum_probs=20.1
Q ss_pred heeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 237 GFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 237 ~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
++-|.++...++-++++++.++.+++-+.+++
T Consensus 30 ~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 30 ISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33367777777777777766655555555444
No 28
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.13 E-value=85 Score=33.73 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=77.3
Q ss_pred EEEEEEEEeCCcccccccCCCcceEEEEEEEEEeecCCcccCCCCCcceeee----eeeeceeeeeeEEecCCCceeEEE
Q 011475 295 VKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWG----LRSLERRAVDFYISDFQSGLRALV 370 (485)
Q Consensus 295 VKItGvVtCG~~PL~Aplskr~rCVYYst~L~EYrg~~~K~an~~h~r~~W~----l~~~Er~~~dFyIsD~~sG~RALV 370 (485)
.-|.|-+.-..+|+++.+..+-.=|.---.++|-+.... ..+-|. +.|.-...++|++.+..++ +++-
T Consensus 60 l~~~~~~~~~~~~~~~~~v~~v~gvv~~~~~~~~~~~~~-------~~~~~~~~~k~~~~~~~~~~~~l~~q~~~-~~~~ 131 (355)
T KOG1571|consen 60 LVIRGCAIARKETLRSLCVSNVPGVVQALTLEEPKGRRD-------GGGHWNANSKIFHEGGNEVPFFLRSQTTG-FACE 131 (355)
T ss_pred HHHhhcccccccchHHhhcccCCceEEEeeeccceeeec-------cceeeccceeeccCCCcccceeeccCCcc-eeee
Confidence 345677777778888877766565666666665543221 122233 5555566799999998887 3332
Q ss_pred ecCCCceeeeeeccceeee-cCCCCCCCCHHHHHHHHhcCCCCCCceeEEEeeeccCCCEEEEEEEEEecC--ceeeEeC
Q 011475 371 KTGYGARVTPYVDDSLAID-VNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRND--NVLMIVP 447 (485)
Q Consensus 371 kaG~GarV~P~Vees~VvD-~~~~~kd~S~el~~wL~ernLSsd~r~mRykEgiI~eGs~VsVmGvv~r~~--~vlmI~p 447 (485)
--=.++...=.-.-..+-| +.++ -..++..-....+++---..||..|..|++|.+...+|...+++ +..|+.|
T Consensus 132 ~~~s~~~~~~~l~l~~~~d~f~~s---~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~ 208 (355)
T KOG1571|consen 132 VRVSKTLGRLFLPLNVVYDLFEPS---DPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPP 208 (355)
T ss_pred eeeecceeeeeecceeeecccccc---CcceeeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCC
Confidence 1000000000011112222 1111 11122222222232333567899999999999999999886665 4454444
Q ss_pred CCC
Q 011475 448 PPE 450 (485)
Q Consensus 448 P~E 450 (485)
|..
T Consensus 209 ~~g 211 (355)
T KOG1571|consen 209 MQG 211 (355)
T ss_pred ccC
Confidence 543
No 29
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=43.28 E-value=36 Score=35.76 Aligned_cols=37 Identities=22% Similarity=0.493 Sum_probs=26.1
Q ss_pred cCc-ceeeccCCcccccccCCChhhHHHHH-HHHHHHHhhhheeehee
Q 011475 198 HNQ-AITVLSQDEDFDFKRNFPKPIFWSLI-LLFVMGFIAGGFILGAV 243 (485)
Q Consensus 198 ~~~-avt~l~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~g~f~l~av 243 (485)
++- +||++|++.-.+ +|... +++.+|+.+|+|++++.
T Consensus 39 ~Glg~vtg~~~~~~WG---------l~I~~y~~~~vglaag~~~is~~ 77 (394)
T PRK10881 39 FGLGSVSNLNGGYPWG---------IWIAFDVLIGTGFACGGWALAWL 77 (394)
T ss_pred hcchhhcCCCCCCCch---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 699999883322 55554 55677999999988863
No 30
>PRK08456 flagellar motor protein MotA; Validated
Probab=43.11 E-value=40 Score=33.84 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=30.3
Q ss_pred hheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhhHhhhhhc
Q 011475 236 GGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWG-RKAIISYIAR 280 (485)
Q Consensus 236 g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~l~Rfl~r 280 (485)
|+=+..-|+=+.++||+++-+++++..+-|+.... -+.+...|++
T Consensus 24 gg~~~~~~~~~~~~IV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (257)
T PRK08456 24 GGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKN 69 (257)
T ss_pred CCCcHHHhhHhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 33344458888999999999999888887766643 3334444433
No 31
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=43.07 E-value=51 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHHH-HHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhh
Q 011475 218 PKPIFWSLILLFV-MGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGW 265 (485)
Q Consensus 218 p~~~~~~~~~~~~-~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iW 265 (485)
-|.=.|++.++|+ |++..+++++-+.+....++.++++.+.++...+|
T Consensus 9 N~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VY 57 (114)
T PF11023_consen 9 NKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVY 57 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444788877764 56555666665555555555556655555444444
No 32
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=43.06 E-value=48 Score=28.30 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=39.7
Q ss_pred CChhhHHHHHHHHHHHHhhhheeeh---eehhh--HHHHHHHHHHHHHHHHHhhhhhhchhhH
Q 011475 217 FPKPIFWSLILLFVMGFIAGGFILG---AVHNA--ILLIVVVVLFSCVAALFGWNTFWGRKAI 274 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f~l~---av~~~--~ll~~~~~lfa~vaa~~iWn~~~~~r~l 274 (485)
|.+...|+++++++.|+..+...+. -+.+. .+|.+=++++++++++-.+|.++-.+.+
T Consensus 7 Fs~~a~~av~~l~~TG~~~a~~~~~~~~l~~t~yG~~Ll~K~~L~~~~l~l~~~~~~~~~p~l 69 (105)
T PF05425_consen 7 FSWIAWAAVAVLVVTGLVMAWLRLGFDALFTTPYGRLLLVKLALVLLMLALAAYNRFRLIPRL 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999887766644 12222 4566667777777777777776443333
No 33
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.38 E-value=63 Score=29.38 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 222 FWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
.|++.+=+++|+++|..+..... .+.++-++++...++++++...+
T Consensus 24 ~~~~~~~~~~gl~~g~~l~~~~~-~w~~~p~~~lig~~l~v~~gg~~ 69 (111)
T TIGR03750 24 GVAAGVGLAAGLVLGLLLALLAG-PWALIPTGALLGPILVVLIGGKL 69 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHH
Confidence 56666778888998877544444 55666666777777767776443
No 34
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=41.87 E-value=61 Score=29.76 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhe--------ee-heehhhHHHHHHHHHHHHHHHHHhhhhhhc--hhhHhhhhhcCCc
Q 011475 226 ILLFVMGFIAGGF--------IL-GAVHNAILLIVVVVLFSCVAALFGWNTFWG--RKAIISYIARYPD 283 (485)
Q Consensus 226 ~~~~~~g~~~g~f--------~l-~av~~~~ll~~~~~lfa~vaa~~iWn~~~~--~r~l~Rfl~r~Pd 283 (485)
+.+..+|++++-+ ++ +.+|+-+|++.++..++--+ .-.+|+++. ++.++.+++..|.
T Consensus 29 ~~~g~~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~-~k~~n~~~A~rD~~m~~YI~lHPE 96 (117)
T PF06374_consen 29 IWLGFLGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYI-TKYRNYYYAERDADMRHYIKLHPE 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhchhHHHHHHhCcc
Confidence 5555567666654 34 66888888777666555544 555677765 4446888888875
No 35
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=41.74 E-value=10 Score=33.07 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhhhhchh
Q 011475 256 FSCVAALFGWNTFWGRK 272 (485)
Q Consensus 256 fa~vaa~~iWn~~~~~r 272 (485)
++++++++.|-++++||
T Consensus 79 v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 79 VGGLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHHHhheeEEeec
Confidence 33444566676665554
No 36
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=41.06 E-value=1.4e+02 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.348 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCC
Q 011475 222 FWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYP 282 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~P 282 (485)
++.++++++.++++|.++ .....+ +++..++.++|++|. -.-+.|.+++-.
T Consensus 9 l~~l~~~~l~~~lvG~~~-----g~~~~~----l~~~l~~~l~wh~~~-l~rL~~WL~~~~ 59 (90)
T PF11808_consen 9 LWRLLLLLLAAALVGWLF-----GHLWWA----LLLGLLLYLFWHLYQ-LYRLERWLRNPR 59 (90)
T ss_pred HHHHHHHHHHHHHHHHHH-----hHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 555555555556666444 122222 223333456676652 222566665443
No 37
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=41.05 E-value=30 Score=32.31 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 232 GFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 232 g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
+|++|+++...+..-.++.++.+++++++++++.+++
T Consensus 88 ~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~~ 124 (154)
T PRK10862 88 GLFLGAALFQLLFGSDLAALCGALLGGVGGFLLARGL 124 (154)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333446777777777777776666654
No 38
>PRK09109 motC flagellar motor protein; Reviewed
Probab=40.84 E-value=48 Score=33.13 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHHhhhheee------heehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhhHhhhhhc
Q 011475 227 LLFVMGFIAGGFIL------GAVHNAILLIVVVVLFSCVAALFGWNTFWG-RKAIISYIAR 280 (485)
Q Consensus 227 ~~~~~g~~~g~f~l------~av~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~l~Rfl~r 280 (485)
++++++.++++|++ .-++=+.+++|+++-++++...+-|+..+. -+.+...+++
T Consensus 9 ~~~~~~~v~~~~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (246)
T PRK09109 9 LILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFP 69 (246)
T ss_pred HHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 34444444444444 447888899999999999888888876644 3344555543
No 39
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=40.81 E-value=53 Score=31.55 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.5
Q ss_pred CCCCEEEEEEEEEeCC
Q 011475 290 KNGQFVKISGVVTCGN 305 (485)
Q Consensus 290 ~dGq~VKItGvVtCG~ 305 (485)
..|+.++|-|.|.-|+
T Consensus 55 ~~g~~iRvgG~V~~GS 70 (160)
T PRK13165 55 EVGQRLRVGGMVMPGS 70 (160)
T ss_pred CCCCEEEEeeEEeCCc
Confidence 4799999999998854
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.03 E-value=36 Score=31.23 Aligned_cols=17 Identities=0% Similarity=0.124 Sum_probs=1.7
Q ss_pred hhhhcCCccccccCCCC
Q 011475 276 SYIARYPDAELRNAKNG 292 (485)
Q Consensus 276 Rfl~r~Pds~l~sa~dG 292 (485)
|+++|.+..++..+.++
T Consensus 89 rR~~Kk~~~~~~p~P~~ 105 (122)
T PF01102_consen 89 RRLRKKSSSDVQPLPEE 105 (122)
T ss_dssp HHHS-------------
T ss_pred HHHhccCCCCCCCCCCC
Confidence 33444455555554444
No 41
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=39.00 E-value=17 Score=30.50 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhch-----------hh-HhhhhhcCCccccccCCCCCEE
Q 011475 247 ILLIVVVVLFSCVAALFGWNTFWGR-----------KA-IISYIARYPDAELRNAKNGQFV 295 (485)
Q Consensus 247 ~ll~~~~~lfa~vaa~~iWn~~~~~-----------r~-l~Rfl~r~Pds~l~sa~dGq~V 295 (485)
.+||+++++.++.+++..|.+...+ ++ -.+||.. +.+|+..++||--
T Consensus 4 ~viIaL~~avaa~a~~atwviVq~~~a~~p~s~eeQr~~re~ff~~--~~~l~~i~~gqem 62 (66)
T PF10907_consen 4 RVIIALVVAVAAAAGAATWVIVQPRPAGNPASSEEQRAHREKFFGG--DKDLRDIRGGQEM 62 (66)
T ss_pred chhHHHHHHHHhhhceeEEEEECCCCCCCCCChHHHHHHHHHHcCC--CCCCCCCCCCccc
Confidence 3455556667777777777655444 22 2566654 5567888889853
No 42
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=37 Score=31.81 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.4
Q ss_pred hhhHhhhhhcCCcccccc-CCCCCEEEEEEEEEeCC
Q 011475 271 RKAIISYIARYPDAELRN-AKNGQFVKISGVVTCGN 305 (485)
Q Consensus 271 ~r~l~Rfl~r~Pds~l~s-a~dGq~VKItGvVtCG~ 305 (485)
.+...+.++++|+.++.+ .+||++|.++|.++..+
T Consensus 46 tK~~yKqik~np~vefcg~~kdg~~vrlrg~a~f~~ 81 (132)
T COG5015 46 TKPYYKQIKKNPEVEFCGMDKDGVMVRLRGRAEFVE 81 (132)
T ss_pred ChHHHHHHhhCCCeEEEEecCCceEEEEeeeEEecc
Confidence 566799999999999977 68999999999998733
No 43
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.02 E-value=99 Score=28.73 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhheee--heeh-----hhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhh
Q 011475 222 FWSLILLFVMGFIAGGFIL--GAVH-----NAILLIVVVVLFSCVAALFGWNTFWGRKAIISYI 278 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l--~av~-----~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl 278 (485)
+|-...++.++|++|...- ..++ -...|.++++++++++.+++|+.|..-..+.+|-
T Consensus 20 L~ysyfl~~~~l~Lg~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 83 (193)
T PF11846_consen 20 LWYSYFLWPFALLLGLLPDPARRLRRIPRSLAFALRAAALLIALAALGFMLTDYHTNEQLTRFE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666666666666666554 2222 2345556666677777777777665444444443
No 44
>PF15050 SCIMP: SCIMP protein
Probab=36.65 E-value=40 Score=31.49 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 011475 246 AILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 246 ~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
||+|+|++.++..++++++|-+|
T Consensus 9 WiiLAVaII~vS~~lglIlyCvc 31 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVC 31 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888999999998555
No 45
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=36.32 E-value=25 Score=32.48 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=8.4
Q ss_pred ccCCCCCEEEEEEE
Q 011475 287 RNAKNGQFVKISGV 300 (485)
Q Consensus 287 ~sa~dGq~VKItGv 300 (485)
+-++.||+|+|.|.
T Consensus 59 ~pf~vGD~I~i~~~ 72 (206)
T PF00924_consen 59 RPFKVGDRIEIGGV 72 (206)
T ss_dssp -SS-TT-EEESSS-
T ss_pred CCccCCCEEEEEEe
Confidence 46899999998743
No 46
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.08 E-value=68 Score=30.80 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.0
Q ss_pred CCCCCEEEEEEEEEeCC
Q 011475 289 AKNGQFVKISGVVTCGN 305 (485)
Q Consensus 289 a~dGq~VKItGvVtCG~ 305 (485)
...|+.++|-|.|.-|+
T Consensus 54 ~~~g~~iRvgG~V~~GS 70 (159)
T PRK13150 54 PAVGQRLRVGGMVMPGS 70 (159)
T ss_pred cCCCCEEEEeeEEeCCc
Confidence 45799999999998854
No 47
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=35.68 E-value=82 Score=36.90 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHHHHhhhheee--heehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCE
Q 011475 217 FPKPIFWSLILLFVMGFIAGGFIL--GAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQF 294 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f~l--~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~ 294 (485)
|-.++.|.+++.+++-|+.|.... -...+|+.-+++++++.+.+++-.|.-+.+++.+.+ |++.-.....-.|||+.
T Consensus 5 f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~-L~~~~~~~~~ViRdg~~ 83 (917)
T TIGR01116 5 FEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEA-LKEYESEHAKVLRDGRW 83 (917)
T ss_pred HhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCceEEEECCEE
Confidence 344556666666666666653321 112355444444444444444555665655555544 33332223333445544
Q ss_pred EEE
Q 011475 295 VKI 297 (485)
Q Consensus 295 VKI 297 (485)
.+|
T Consensus 84 ~~I 86 (917)
T TIGR01116 84 SVI 86 (917)
T ss_pred EEE
Confidence 443
No 48
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=60 Score=31.17 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCcccc--ccCCCCCEEEEEEEEEeC
Q 011475 245 NAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAEL--RNAKNGQFVKISGVVTCG 304 (485)
Q Consensus 245 ~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l--~sa~dGq~VKItGvVtCG 304 (485)
++.+++++++..++++.+.+|+. ++++-=| |.-+++ .....||.+.+-|-|.-|
T Consensus 8 Rl~~il~~~a~l~~a~~l~Lyal---~~ni~~f---y~Psel~~~~~~~G~rlR~GGlV~~G 63 (153)
T COG2332 8 RLWIILAGLAGLALAVGLVLYAL---RSNIDYF---YTPSELLEGKVETGQRLRLGGLVEAG 63 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh---ccCceEE---ECHHHhccccccCCcEEEEeeeEeec
Confidence 45555556666666666666654 3444333 444455 334558999999999884
No 49
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=35.34 E-value=5.1e+02 Score=26.59 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=47.6
Q ss_pred eceeeeeeEEecCCCceeEEEecCCCceee-------ee-----eccceeeecCCCCCCCCHHHHHHHHhcCCCCCCc--
Q 011475 350 LERRAVDFYISDFQSGLRALVKTGYGARVT-------PY-----VDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDR-- 415 (485)
Q Consensus 350 ~Er~~~dFyIsD~~sG~RALVkaG~GarV~-------P~-----Vees~VvD~~~~~kd~S~el~~wL~ernLSsd~r-- 415 (485)
-|.....|-|.|..+| +.|--+.+- +|+ -. +.+..|.. ..=..++..+| .|++++|
T Consensus 113 v~~~~~~F~V~d~~~g-~~lFsad~~-~v~v~~~~lrv~~~~G~l~~~~v~T-~~Irs~~~~~L-------~leS~trsL 182 (264)
T PF04790_consen 113 VEAQSNRFEVKDPRDG-KTLFSADRP-EVVVGAEKLRVTGPEGALFEKSVQT-PRIRSPPNEDL-------RLESPTRSL 182 (264)
T ss_pred EEEecCeEEEEcCCCC-ceEEEecCC-ceEEeeeeEEecCCccEEEeeeEEe-ccccCCCCccc-------ccccCCcEE
Confidence 5667888999998555 445444333 221 11 11222211 00002444445 7888988
Q ss_pred eeEEEeeeccCCCE--EEEEE----EEEecCceeeEeC
Q 011475 416 IMRLKEGYIKEGST--VSVMG----VVQRNDNVLMIVP 447 (485)
Q Consensus 416 ~mRykEgiI~eGs~--VsVmG----vv~r~~~vlmI~p 447 (485)
.||--||+-=++.. |.+-. .++-.++.+++..
T Consensus 183 ~~~a~egV~i~a~ag~I~~~a~~di~L~S~~G~i~Lda 220 (264)
T PF04790_consen 183 SMRAPEGVHIEAKAGDIEASARQDISLNSTDGSIVLDA 220 (264)
T ss_pred EEECCCCeEEEeccCcEEEEecCCEEEEecCCeEEEec
Confidence 77888887766666 55533 2233466666666
No 50
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.26 E-value=58 Score=27.75 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.3
Q ss_pred hhhhchhhHhhhhhcCCcc
Q 011475 266 NTFWGRKAIISYIARYPDA 284 (485)
Q Consensus 266 n~~~~~r~l~Rfl~r~Pds 284 (485)
.+|.++|-..+.|++.|.-
T Consensus 21 G~fiark~~~k~lk~NPpi 39 (71)
T COG3763 21 GFFIARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHhhCCCC
Confidence 3556788889999988864
No 51
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.73 E-value=49 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhh
Q 011475 252 VVVLFSCVAALFGWNT 267 (485)
Q Consensus 252 ~~~lfa~vaa~~iWn~ 267 (485)
...+|+++.+++|+|+
T Consensus 47 ~ai~~glvwgl~I~~l 62 (301)
T PF14362_consen 47 AAIPFGLVWGLVIFNL 62 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455566666665
No 52
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=34.61 E-value=74 Score=31.21 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccc
Q 011475 226 ILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELR 287 (485)
Q Consensus 226 ~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~ 287 (485)
.++|+|+|..-+|+ |+.=.++-+.+.+++++.+||... .+++++|--+++|.+-+.
T Consensus 59 fv~~it~~~l~~f~-----sp~~iilglivvvlvi~~liwa~~-~~a~~krmr~~hp~~~l~ 114 (188)
T KOG4050|consen 59 FVTFITLFLLHGFI-----SPQDIILGLIVVVLVIGTLIWAAS-ADANIKRMRTDHPLVTLA 114 (188)
T ss_pred HHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhhcCcHHHHH
Confidence 45677777766665 444444445556677778999554 566676666777766543
No 53
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=34.44 E-value=73 Score=29.10 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhh
Q 011475 222 FWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGW 265 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iW 265 (485)
.+++.+=+++|+++|.++......+ .++..+++..+++.+++.
T Consensus 27 ~~~a~~~~~~g~~~gl~la~~~g~~-a~~pt~~ll~~~~~v~~g 69 (121)
T PF11990_consen 27 GLAAGVGFVAGLVVGLPLALLTGWW-AMIPTGALLGPILGVFVG 69 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4555566777888888866665554 345555555555544444
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=34.32 E-value=1.2e+02 Score=34.23 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=21.7
Q ss_pred eeeccCCCEEEEEEEEEecCceeeEeCCC
Q 011475 421 EGYIKEGSTVSVMGVVQRNDNVLMIVPPP 449 (485)
Q Consensus 421 EgiI~eGs~VsVmGvv~r~~~vlmI~pP~ 449 (485)
+..+++|+++.|-|.++...+.+-|..|.
T Consensus 105 ~~~l~~G~~~~v~Gkv~~~~~~~qm~~P~ 133 (681)
T PRK10917 105 KKQLKVGKRVAVYGKVKRGKYGLEMVHPE 133 (681)
T ss_pred HhhCCCCCEEEEEEEEEecCCeEEEEcCE
Confidence 34578999999999998876655555553
No 55
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=34.30 E-value=2.2e+02 Score=28.77 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=33.1
Q ss_pred cccccCCCCCEEEEEEEEEeCCcccccccCCCcceEEEEEEEEEe
Q 011475 284 AELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEY 328 (485)
Q Consensus 284 s~l~sa~dGq~VKItGvVtCG~~PL~Aplskr~rCVYYst~L~EY 328 (485)
.++.--.+|..++++|-+-- +.-|.=|+++.|=||--...++++
T Consensus 158 ~~v~i~~~~~~~~~~allDT-GN~L~DPitg~PV~Vve~~~~~~~ 201 (293)
T PF03419_consen 158 YPVTIEIGGKKIELKALLDT-GNQLRDPITGRPVIVVEYEALEKL 201 (293)
T ss_pred EEEEEEECCEEEEEEEEEEC-CCcccCCCCCCcEEEEEHHHHHhh
Confidence 34455667889999999999 556899999997676666555555
No 56
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=33.87 E-value=61 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=30.9
Q ss_pred CCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHH
Q 011475 216 NFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLF 256 (485)
Q Consensus 216 ~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lf 256 (485)
++....++.+++..++|..+|++++..+-..++..++..+.
T Consensus 60 ~i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~l 100 (240)
T PF01925_consen 60 NIDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFL 100 (240)
T ss_pred ccchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 37777788888888999999999999887765555444443
No 57
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=33.69 E-value=21 Score=42.26 Aligned_cols=16 Identities=56% Similarity=0.889 Sum_probs=14.5
Q ss_pred ccccCCceeeeCCCCC
Q 011475 7 SHQLSNGLYVSGRPEQ 22 (485)
Q Consensus 7 shqlsnglyvsgrpeq 22 (485)
-|||.|||||+|+|-|
T Consensus 1199 qH~Lps~l~v~~qp~q 1214 (1387)
T KOG1016|consen 1199 QHQLPSGLYVKLQPGQ 1214 (1387)
T ss_pred ccccCccceEecCCcc
Confidence 5999999999999974
No 58
>PRK09110 flagellar motor protein MotA; Validated
Probab=33.58 E-value=65 Score=33.16 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHHHHHhhhhee------eheehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhhHhhhhh
Q 011475 228 LFVMGFIAGGFI------LGAVHNAILLIVVVVLFSCVAALFGWNTFWG-RKAIISYIA 279 (485)
Q Consensus 228 ~~~~g~~~g~f~------l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~l~Rfl~ 279 (485)
++++|+++++|+ .+-+|=+.+|||+++-+++++..+-++.... -+.+.+-|+
T Consensus 8 i~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtlga~lv~~p~~~i~~~~k~~~~~f~ 66 (283)
T PRK09110 8 IVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFK 66 (283)
T ss_pred HHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 334444444444 3448888999999999999988888877643 334444443
No 59
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=33.34 E-value=75 Score=23.87 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=22.7
Q ss_pred eccCCCEEEEEEEEEecCceeeEeCCC
Q 011475 423 YIKEGSTVSVMGVVQRNDNVLMIVPPP 449 (485)
Q Consensus 423 iI~eGs~VsVmGvv~r~~~vlmI~pP~ 449 (485)
.+++|+.+.|.|.+++..+.+-|..|.
T Consensus 45 ~~~~G~~~~v~Gkv~~~~~~~qi~~P~ 71 (75)
T cd04488 45 QLPPGTRVRVSGKVKRFRGGLQIVHPE 71 (75)
T ss_pred cCCCCCEEEEEEEEeecCCeeEEeCCc
Confidence 478999999999999988877777664
No 60
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=33.05 E-value=59 Score=30.83 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHHhhhheeeheehhhHH
Q 011475 217 FPKPIFWSLILLFVMGFIAGGFILGAVHNAIL 248 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~l 248 (485)
+-+.+.|.++.++++.++.-..+++.-++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 35 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFFGFDHSFLL 35 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44566677666665554444444444455444
No 61
>PRK08124 flagellar motor protein MotA; Validated
Probab=32.18 E-value=81 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.0
Q ss_pred eeheehhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 011475 239 ILGAVHNAILLIVVVVLFSCVAALFGWNTFWG 270 (485)
Q Consensus 239 ~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~ 270 (485)
+..-||=+.+|+|+++-+++++..+-++..+.
T Consensus 27 ~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~ 58 (263)
T PRK08124 27 LAVLLNPAAILIIIVGTIAAVMIAFPMSELKK 58 (263)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33447888899999999999988888866643
No 62
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=31.62 E-value=68 Score=37.90 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=18.5
Q ss_pred EEEEEEEecCceeeEeCCCCcccccc
Q 011475 431 SVMGVVQRNDNVLMIVPPPEPITTGC 456 (485)
Q Consensus 431 sVmGvv~r~~~vlmI~pP~E~~stgc 456 (485)
..|-++.+....+-+..++|....|-
T Consensus 291 W~i~ViPD~pP~Ia~~~~Pe~~~~g~ 316 (851)
T TIGR02302 291 WSFTATPDKPPAIAFAKEPQRQANGS 316 (851)
T ss_pred eEEEEecCCCCeeeecCCCCcCCCCe
Confidence 45666777777777778888777663
No 63
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=31.60 E-value=67 Score=31.63 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHhhhheeeheehhhHHHHHH
Q 011475 219 KPIFWSLILLFVMGFIAGGFILGAVHNAILLIVV 252 (485)
Q Consensus 219 ~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~ 252 (485)
+...+...++++.++++|.+++...+|+..++..
T Consensus 77 ~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~ 110 (285)
T PRK12872 77 TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF 110 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5556667778888899999988888888666543
No 64
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=31.48 E-value=73 Score=28.93 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=29.0
Q ss_pred ccccCCChhhHHHHHHHHHHHHhhhheeeheehhhHH-HHHHHHHHHHHHHHHhhhhh
Q 011475 212 DFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAIL-LIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 212 ~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~l-l~~~~~lfa~vaa~~iWn~~ 268 (485)
++..|.=|++.++..+-++..+++...+ ...+|..+ .+.+...++..+..++++++
T Consensus 50 rf~~n~~kAa~~af~v~l~~~~ii~l~~-~i~~~~~~~~~~i~i~~~i~l~vf~~~~~ 106 (118)
T PF12676_consen 50 RFYENVRKAASRAFFVALILLFIILLIS-MIFDNLELITILIAIAFAIALLVFAISYL 106 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777887777666665555554444 33344433 22222333333335555555
No 65
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=30.91 E-value=85 Score=33.06 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=16.6
Q ss_pred hhhHhhhhhcCCcc---ccccCCCCC
Q 011475 271 RKAIISYIARYPDA---ELRNAKNGQ 293 (485)
Q Consensus 271 ~r~l~Rfl~r~Pds---~l~sa~dGq 293 (485)
+|...||...+|++ -.++++.|-
T Consensus 128 ~rr~krf~~qlP~aLdlivr~l~aG~ 153 (309)
T COG4965 128 ARRLKRFGQQLPEALDLIVRALRAGA 153 (309)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhCCC
Confidence 45578999999987 337777665
No 66
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=30.69 E-value=1.7e+02 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCEEEEE
Q 011475 244 HNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 298 (485)
Q Consensus 244 ~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~VKIt 298 (485)
...++++.|++=|++..++.+|+.|+-+..+....++-+ ...++.+.|.
T Consensus 55 s~~~~~~~v~~YfiLs~il~~~~~~~ek~~~~~g~~~~~------~~~~~~i~i~ 103 (162)
T PF06703_consen 55 SKPYLIICVILYFILSGILTLYSYFVEKDIFYVGKRKDG------SSSGEKITIS 103 (162)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeccCC------CCCCCEEEEE
Confidence 345566666666777777777777755443333322221 4456666665
No 67
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=30.22 E-value=81 Score=30.43 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhe
Q 011475 222 FWSLILLFVMGFIAGGF 238 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f 238 (485)
-|.-.+.-.++|++|++
T Consensus 131 p~~~al~~~~sf~lg~l 147 (213)
T PF01988_consen 131 PWKAALATFLSFILGGL 147 (213)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666666664
No 68
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=30.19 E-value=83 Score=32.34 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHhhhheee------heehhhHHHHHHHHHHHHHHHHHhhhhhh
Q 011475 227 LLFVMGFIAGGFIL------GAVHNAILLIVVVVLFSCVAALFGWNTFW 269 (485)
Q Consensus 227 ~~~~~g~~~g~f~l------~av~~~~ll~~~~~lfa~vaa~~iWn~~~ 269 (485)
++++.|+++++|++ .-++=+.++||+++-+++++..+-++..+
T Consensus 7 li~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtlga~lis~p~~~~~ 55 (282)
T TIGR03818 7 LVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAIGAFIIANPPKVLK 55 (282)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34444444444444 44788889999999999998888887664
No 69
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=29.88 E-value=57 Score=34.44 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.4
Q ss_pred cceeeccCCcccccccCCChhhHHHHHHHHHHH
Q 011475 200 QAITVLSQDEDFDFKRNFPKPIFWSLILLFVMG 232 (485)
Q Consensus 200 ~avt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g 232 (485)
.+++.+.+|-+ .-++++||++++++++.+++|
T Consensus 230 e~~~~~aeE~k-nP~r~iPrai~~s~~i~~~~~ 261 (475)
T TIGR03428 230 GSAGELSEETK-NPRRVAPRTILTALSVSALGG 261 (475)
T ss_pred chHHHHHHHhc-CcchhhhHHHHHHHHHHHHHH
Confidence 45666777755 568899999999998776655
No 70
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=29.72 E-value=43 Score=34.45 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=35.2
Q ss_pred cCcceeeccCCcccccccCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 011475 198 HNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWG 270 (485)
Q Consensus 198 ~~~avt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~ 270 (485)
|=-.|++..++ |.-++-+=..++=++.+++++|+.+|.+-.+--|+.+..+-+ ++|.+.+.+++-.+||.
T Consensus 182 HCrKvSSVG~~--faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv-~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 182 HCRKVSSVGPR--FARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWV-GLFLIALICLIRSIYYC 251 (256)
T ss_pred CCceeccccch--HhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHH-HHHHHHHHHHHHhheeE
Confidence 44455665543 544433333344444455566677777666555554443333 33433333555566654
No 71
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=29.65 E-value=80 Score=32.10 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=23.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 011475 243 VHNAILLIVVVVLFSCVAALFGWNTFWG 270 (485)
Q Consensus 243 v~~~~ll~~~~~lfa~vaa~~iWn~~~~ 270 (485)
||=+.++||+++-++++...+-++..+.
T Consensus 28 ~~~~~~lIV~GGt~ga~li~~p~~~i~~ 55 (254)
T PRK06743 28 LDVSSILIVIGGTTATIVVAYRFGEIKK 55 (254)
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7888999999999999998888877644
No 72
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=29.52 E-value=81 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhch
Q 011475 247 ILLIVVVVLFSCVAALFGWNTFWGR 271 (485)
Q Consensus 247 ~ll~~~~~lfa~vaa~~iWn~~~~~ 271 (485)
|+..|++++..+++..++|.+|++|
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445555666666667777777665
No 73
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=29.22 E-value=81 Score=31.63 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.1
Q ss_pred eeeccCCcccccccCCChhhHHHHHHHHHHHHhhhheeehee
Q 011475 202 ITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAV 243 (485)
Q Consensus 202 vt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av 243 (485)
||++|++.-. - +|...-+|..|+.+|+|++++.
T Consensus 2 vt~~~~~~~W--------G-l~i~~y~f~~glaaG~~~~a~~ 34 (313)
T PF03916_consen 2 VTGMSDQVPW--------G-LPIAVYLFFGGLAAGAFLLASL 34 (313)
T ss_pred CCCCCCCCCc--------c-cHHHHHHHHHHHHHHHHHHHHH
Confidence 6787777322 2 4455577778888888877654
No 74
>PRK10490 sensor protein KdpD; Provisional
Probab=28.65 E-value=38 Score=39.35 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhhhh
Q 011475 255 LFSCVAALFGWNTF 268 (485)
Q Consensus 255 lfa~vaa~~iWn~~ 268 (485)
++++++++++||+|
T Consensus 449 i~aavls~l~~nfF 462 (895)
T PRK10490 449 VVATVINVASFDLF 462 (895)
T ss_pred HHHHHHHHHHHHhe
Confidence 34444444444444
No 75
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=28.49 E-value=1.9e+02 Score=32.37 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=21.8
Q ss_pred eccCCCEEEEEEEEEecCceeeEeCCC
Q 011475 423 YIKEGSTVSVMGVVQRNDNVLMIVPPP 449 (485)
Q Consensus 423 iI~eGs~VsVmGvv~r~~~vlmI~pP~ 449 (485)
.+++|+++.|.|.++...+-+.|..|.
T Consensus 80 ~~~~g~~~~~~Gk~~~~~~~~~~~~p~ 106 (630)
T TIGR00643 80 KFKVGSKVVVYGKVKSSKFKAYLIHPE 106 (630)
T ss_pred hCCCCCEEEEEEEEEeeCCEEEEECCE
Confidence 378999999999999877766666664
No 76
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.26 E-value=67 Score=27.18 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhh
Q 011475 246 AILLIVVVVLFSCVAALFGWNTFWGRKAIISYI 278 (485)
Q Consensus 246 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl 278 (485)
|..+-++.+++..++ .++-|.||..++-+|.-
T Consensus 33 W~aIGvi~gi~~~~l-t~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLL-TYLTNLYFKIKEDRRKA 64 (68)
T ss_pred chhHHHHHHHHHHHH-HHHhHhhhhhhHhhhHh
Confidence 444444444443333 45559999877766653
No 77
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=27.87 E-value=91 Score=29.50 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=29.3
Q ss_pred ccCCChhhHHHHHHHHHHHH-----------hhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 214 KRNFPKPIFWSLILLFVMGF-----------IAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 214 ~~~~p~~~~~~~~~~~~~g~-----------~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
+.++|+.+=..+-+|+=.|| +.|-|..---.|-+.+-++++++.+++ +++|-.|
T Consensus 10 qr~~~rliD~~~T~laW~gf~~~~~~~l~~~l~~p~~~~~~l~tl~~Y~~iAv~nAvv-LI~WA~Y 74 (137)
T PRK14585 10 QSPVRLLVDYVATTILWTLFALFIFLFAMDLLTGYYWQSEARSRLQFYFLLAVANAVV-LIVWALY 74 (137)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 55677765444433333332 234332222345556666777777776 8899555
No 78
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=27.78 E-value=1.1e+02 Score=29.38 Aligned_cols=22 Identities=32% Similarity=0.952 Sum_probs=18.2
Q ss_pred CChhhHHHHHHHHHHHHhhhhe
Q 011475 217 FPKPIFWSLILLFVMGFIAGGF 238 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f 238 (485)
+|+..+|.+++..+..+..+.+
T Consensus 202 lP~~~~~~~i~~~~~~l~~~~~ 223 (290)
T PF09991_consen 202 LPRWLIWLLIVALALSLVGGGF 223 (290)
T ss_pred CcHHHHHHHHHHHHHHHHhccc
Confidence 8999999999988888775544
No 79
>PRK12482 flagellar motor protein MotA; Provisional
Probab=27.35 E-value=1e+02 Score=32.03 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhheee------heehhhHHHHHHHHHHHHHHHHHhhhhhh
Q 011475 226 ILLFVMGFIAGGFIL------GAVHNAILLIVVVVLFSCVAALFGWNTFW 269 (485)
Q Consensus 226 ~~~~~~g~~~g~f~l------~av~~~~ll~~~~~lfa~vaa~~iWn~~~ 269 (485)
-+++++|+++++|++ .-+|=+.++||+++-+++++..+-|+...
T Consensus 6 Glv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~ga~lis~p~~~~~ 55 (287)
T PRK12482 6 GLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLK 55 (287)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344455555555544 33777889999999999998888886664
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.04 E-value=1.4e+02 Score=30.98 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=5.3
Q ss_pred eeeheehhh
Q 011475 238 FILGAVHNA 246 (485)
Q Consensus 238 f~l~av~~~ 246 (485)
.++.+|-++
T Consensus 27 yv~i~~~~~ 35 (398)
T PRK10747 27 YVLIQTDNY 35 (398)
T ss_pred eEEEEECCE
Confidence 566666554
No 81
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=27.02 E-value=91 Score=27.60 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=11.6
Q ss_pred hhHh-hhhhcCCcccccc
Q 011475 272 KAII-SYIARYPDAELRN 288 (485)
Q Consensus 272 r~l~-Rfl~r~Pds~l~s 288 (485)
.++. -++++.|++-.|.
T Consensus 81 ~~~~~~~~k~~P~S~~R~ 98 (101)
T PRK13707 81 TALLRGIFHNVPDSCFRQ 98 (101)
T ss_pred hhhcccccCcCCcHHHHH
Confidence 3343 4688999887764
No 82
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=26.94 E-value=83 Score=33.19 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhheeeheeh
Q 011475 222 FWSLILLFVMGFIAGGFILGAVH 244 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~av~ 244 (485)
.|++.-+|..|+.+|+|++++.+
T Consensus 16 ~~iv~YlFl~GlaaGa~lla~~~ 38 (335)
T PRK14992 16 PWAVQYFFFIGIAACAALFACYL 38 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998763
No 83
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=26.67 E-value=2.3e+02 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHH--Hhhhheeeheeh
Q 011475 221 IFWSLILLFVMG--FIAGGFILGAVH 244 (485)
Q Consensus 221 ~~~~~~~~~~~g--~~~g~f~l~av~ 244 (485)
.+|.++.++.+. ++.++|+|..+.
T Consensus 6 ~~wli~g~~ll~~E~l~~~~~ll~~g 31 (140)
T COG1585 6 WIWLILGLLLLIAEILGPGVFLLWLG 31 (140)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 455554443333 555666655555
No 84
>PRK07118 ferredoxin; Validated
Probab=26.37 E-value=38 Score=34.50 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHhhhheeeheehh
Q 011475 220 PIFWSLILLFVMGFIAGGFILGAVHN 245 (485)
Q Consensus 220 ~~~~~~~~~~~~g~~~g~f~l~av~~ 245 (485)
.|++++++|.++||++|.++..|-+.
T Consensus 3 ~i~~~~~~~~~~g~~~g~~l~~a~~~ 28 (280)
T PRK07118 3 MILFAVLSLGALGLVFGILLAFASKK 28 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 57899999999999999888776553
No 85
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=26.36 E-value=63 Score=31.58 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhch
Q 011475 248 LLIVVVVLFSCVAALFGWNTFWGR 271 (485)
Q Consensus 248 ll~~~~~lfa~vaa~~iWn~~~~~ 271 (485)
|+.-+++||+++.|+++||++.++
T Consensus 167 L~aTA~GL~vAIPAvi~yn~l~r~ 190 (216)
T COG0811 167 LIATAIGLFVAIPAVVAYNVLRRK 190 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999998543
No 86
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=26.31 E-value=37 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHhhhheeehe
Q 011475 221 IFWSLILLFVMGFIAGGFILGA 242 (485)
Q Consensus 221 ~~~~~~~~~~~g~~~g~f~l~a 242 (485)
++++++++.++|+++|.++..|
T Consensus 2 ~~~~~~~~~~~g~~~~~~l~~~ 23 (165)
T TIGR01944 2 IIAAVAALSALGLALGAILGYA 23 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888887777655443
No 87
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=25.67 E-value=1.4e+02 Score=23.93 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=29.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHH
Q 011475 211 FDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFS 257 (485)
Q Consensus 211 ~~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa 257 (485)
|.-++.+|+..=+..++.....++..+|++ +.+..+.++++++.+
T Consensus 18 w~~~r~i~~k~K~~a~~~m~~~~~~s~~~~--~~~~~~~~~l~~~~~ 62 (71)
T PF04304_consen 18 WEEHRGIPRKAKIRALLMMWLSMGISAFFF--VPNLWVRIVLAAILL 62 (71)
T ss_pred HHHCCCcCHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHH
Confidence 777888999888887777777777765553 344444444444433
No 88
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=25.45 E-value=1.6e+02 Score=27.90 Aligned_cols=12 Identities=25% Similarity=1.049 Sum_probs=7.4
Q ss_pred ccCCChhhHHHHH
Q 011475 214 KRNFPKPIFWSLI 226 (485)
Q Consensus 214 ~~~~p~~~~~~~~ 226 (485)
...+|.. +|.++
T Consensus 132 ~~~lp~~-~w~vl 143 (209)
T PF14023_consen 132 QSSLPPP-LWIVL 143 (209)
T ss_pred hcCCChh-HHHHH
Confidence 3578887 55543
No 89
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.83 E-value=75 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 011475 245 NAILLIVVVVLFSCVAALFGWNT 267 (485)
Q Consensus 245 ~~~ll~~~~~lfa~vaa~~iWn~ 267 (485)
...++.+++.++++++|.++|.+
T Consensus 3 ~l~i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp -----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666777744
No 90
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=24.26 E-value=79 Score=34.38 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.5
Q ss_pred CCCCcceeee-eeeeceeeeeeEEecCCCceeEEEec
Q 011475 337 NPTHRRFTWG-LRSLERRAVDFYISDFQSGLRALVKT 372 (485)
Q Consensus 337 n~~h~r~~W~-l~~~Er~~~dFyIsD~~sG~RALVka 372 (485)
+..| |++|+ ++++....+.|++.|.++|.+-.|++
T Consensus 332 e~g~-r~SWrmMl~~~~~~~~~~v~d~~tg~~~~v~~ 367 (446)
T PF05090_consen 332 EEGY-RFSWRMMLRSKSGYVQFKVVDKKTGERFYVDP 367 (446)
T ss_pred cccc-cceeEEEEEEcceeEEEEEEeCCCCceEEECh
Confidence 5667 79999 45555567899999999998766643
No 91
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=24.20 E-value=53 Score=30.09 Aligned_cols=61 Identities=30% Similarity=0.519 Sum_probs=35.0
Q ss_pred eeeEEecCCCc-----eeEEEecCCCceeeeeeccceeee-cCCCC----CCCCHHHHHHHHhcCCCCCCceeEEEeeec
Q 011475 355 VDFYISDFQSG-----LRALVKTGYGARVTPYVDDSLAID-VNPGK----EELSPEFIRWLAERNLSSDDRIMRLKEGYI 424 (485)
Q Consensus 355 ~dFyIsD~~sG-----~RALVkaG~GarV~P~Vees~VvD-~~~~~----kd~S~el~~wL~ernLSsd~r~mRykEgiI 424 (485)
.-.+|+|.|+. ..++|..|. ++. ..-| +.|.. ..+=.||..||.+++ . |.+|-+|
T Consensus 17 ~v~liTDwQd~R~~ARYa~ll~~gk----~~l----lt~dAFGPafG~~G~~ALaELv~wl~~~G------~-~f~EaVl 81 (113)
T PF11432_consen 17 KVYLITDWQDQRPQARYALLLRGGK----EPL----LTPDAFGPAFGPEGERALAELVRWLQERG------A-RFYEAVL 81 (113)
T ss_dssp EEEEEEE--SSCCC--EEEEEE-SS-----EE----EEEEEESTTS-TTHHHHHHHHHHHHHHTT--------EEEEEEE
T ss_pred eEEEEeccccchhhhhhhhheecCC----ccc----ccccccCcccCccHHHHHHHHHHHHHHcC------C-chhheec
Confidence 34578887764 234444442 222 3334 55544 245568999999999 4 8999999
Q ss_pred cCCCEE
Q 011475 425 KEGSTV 430 (485)
Q Consensus 425 ~eGs~V 430 (485)
.+|+-.
T Consensus 82 ~p~e~~ 87 (113)
T PF11432_consen 82 SPSEFA 87 (113)
T ss_dssp -GGGHH
T ss_pred CHHHHH
Confidence 988643
No 92
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.19 E-value=93 Score=26.39 Aligned_cols=23 Identities=9% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhhchhh
Q 011475 251 VVVVLFSCVAALFGWNTFWGRKA 273 (485)
Q Consensus 251 ~~~~lfa~vaa~~iWn~~~~~r~ 273 (485)
+.+++.++++++++|.+|.++++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 34455667788899988866544
No 93
>PRK01844 hypothetical protein; Provisional
Probab=24.10 E-value=52 Score=28.09 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhh
Q 011475 222 FWSLILLFVMGFIAGG 237 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~ 237 (485)
+|..++|.+++|++|+
T Consensus 3 ~~~~I~l~I~~li~G~ 18 (72)
T PRK01844 3 IWLGILVGVVALVAGV 18 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5776777667777665
No 94
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.93 E-value=48 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHHhhhheeeheeh
Q 011475 217 FPKPIFWSLILLFVMGFIAGGFILGAVH 244 (485)
Q Consensus 217 ~p~~~~~~~~~~~~~g~~~g~f~l~av~ 244 (485)
++-+...++++.|++|+++|.++....+
T Consensus 16 ~~~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 16 FPLPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
No 95
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=23.81 E-value=98 Score=28.00 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHH---HHhhhheeeheehhhHHHHHHH
Q 011475 220 PIFWSLILLFVM---GFIAGGFILGAVHNAILLIVVV 253 (485)
Q Consensus 220 ~~~~~~~~~~~~---g~~~g~f~l~av~~~~ll~~~~ 253 (485)
-.-|.+|++|.+ |+|+..|.-.||.+-.|.-+++
T Consensus 47 ylrwslilifmilkaglivavfmhmawerlal~yaii 83 (115)
T COG5605 47 YLRWSLILIFMILKAGLIVAVFMHMAWERLALVYAII 83 (115)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 456999888765 7999999999998866554443
No 96
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=23.72 E-value=1.1e+02 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred eccCCCEEEEEEEEEecCceeeEeCCC
Q 011475 423 YIKEGSTVSVMGVVQRNDNVLMIVPPP 449 (485)
Q Consensus 423 iI~eGs~VsVmGvv~r~~~vlmI~pP~ 449 (485)
-+++|++|.|-|+++...+..=|.+++
T Consensus 44 ~~~~Gd~V~vtG~v~ey~g~tql~~~~ 70 (78)
T cd04486 44 DVAVGDLVRVTGTVTEYYGLTQLTAVS 70 (78)
T ss_pred CCCCCCEEEEEEEEEeeCCeEEEccCC
Confidence 467899999999999999888777775
No 97
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.66 E-value=1e+02 Score=29.50 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=13.2
Q ss_pred CCCCCEEEEEEEEEeCC
Q 011475 289 AKNGQFVKISGVVTCGN 305 (485)
Q Consensus 289 a~dGq~VKItGvVtCG~ 305 (485)
...++.++|-|.|.-|+
T Consensus 48 ~~~~~~~RlGG~V~~GS 64 (155)
T PRK13159 48 AAGYQQFRLGGMVKAGS 64 (155)
T ss_pred cccCCeEEEccEEecCc
Confidence 45678899999988754
No 98
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.44 E-value=1.4e+02 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=12.6
Q ss_pred HHHHHhhhhhhchhhHhhhhhcC
Q 011475 259 VAALFGWNTFWGRKAIISYIARY 281 (485)
Q Consensus 259 vaa~~iWn~~~~~r~l~Rfl~r~ 281 (485)
+++.+++..++.+|.+++.+++.
T Consensus 18 ~l~~li~~~~~~~r~~~~~l~~~ 40 (45)
T TIGR03141 18 VLAGLILWSLLDRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666677766654
No 99
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.41 E-value=49 Score=30.46 Aligned_cols=17 Identities=41% Similarity=0.921 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhee
Q 011475 223 WSLILLFVMGFIAGGFI 239 (485)
Q Consensus 223 ~~~~~~~~~g~~~g~f~ 239 (485)
|-+|++..+||+||.|+
T Consensus 75 wglIv~lllGf~AG~ln 91 (116)
T COG5336 75 WGLIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666666543
No 100
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=23.28 E-value=70 Score=27.71 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=7.2
Q ss_pred cCCCCCEEEEE
Q 011475 288 NAKNGQFVKIS 298 (485)
Q Consensus 288 sa~dGq~VKIt 298 (485)
+--.|+..+++
T Consensus 87 ~~liG~~g~v~ 97 (144)
T PF01957_consen 87 DDLIGKEGTVI 97 (144)
T ss_dssp GGGTTSEEEEE
T ss_pred HHHcCCeEEEE
Confidence 34478877775
No 101
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.97 E-value=2.8e+02 Score=32.08 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=13.2
Q ss_pred ceeeccCCcccccccCCChhhHHHHHHHHHHHHhhh
Q 011475 201 AITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAG 236 (485)
Q Consensus 201 avt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~g 236 (485)
+...|+.. |-|+.++ +|++.+..++-|+++
T Consensus 21 ~~~~~~~~--~~~~~p~----~~vl~~~a~ls~~~~ 50 (679)
T PRK01122 21 AFKKLDPR--VQIRNPV----MFVVEVGSILTTILT 50 (679)
T ss_pred HHHcCCHH--HHhhChH----HHHHHHHHHHHHHHH
Confidence 34444444 4444333 344444444444444
No 102
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.93 E-value=1.3e+02 Score=25.06 Aligned_cols=6 Identities=0% Similarity=-0.114 Sum_probs=2.3
Q ss_pred ChhhHH
Q 011475 218 PKPIFW 223 (485)
Q Consensus 218 p~~~~~ 223 (485)
++.++|
T Consensus 39 ~r~~~~ 44 (82)
T PF11239_consen 39 RRRRVL 44 (82)
T ss_pred hhHHHH
Confidence 343333
No 103
>PRK10621 hypothetical protein; Provisional
Probab=22.81 E-value=1.4e+02 Score=29.34 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccccccCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHH
Q 011475 210 DFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVL 255 (485)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~l 255 (485)
.|.-++++.....|.+++....|-.+|++++..+....+..++.++
T Consensus 68 ~~~~~~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ 113 (266)
T PRK10621 68 YFIRRKVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPIL 113 (266)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3555677888888888888999999999998887766555444433
No 104
>PRK10847 hypothetical protein; Provisional
Probab=22.66 E-value=1.8e+02 Score=28.31 Aligned_cols=16 Identities=25% Similarity=0.825 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHhhhh
Q 011475 221 IFWSLILLFVMGFIAGG 237 (485)
Q Consensus 221 ~~~~~~~~~~~g~~~g~ 237 (485)
++|+.+.+ ..|..+|.
T Consensus 165 ~~W~~~~~-~~Gy~~g~ 180 (219)
T PRK10847 165 LLWVLLFT-YAGYFFGT 180 (219)
T ss_pred HHHHHHHH-HHHHHHcC
Confidence 34444332 33555554
No 105
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=22.60 E-value=1.2e+02 Score=33.42 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.7
Q ss_pred cceeeccCCcccccccCCChhhHHHHHHHHHHHHhhh
Q 011475 200 QAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAG 236 (485)
Q Consensus 200 ~avt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~g 236 (485)
.+++.+.+|.+ .-++++||++++.++...+.-+++-
T Consensus 248 d~v~~~aeE~k-nP~r~iP~aii~sl~i~~vlY~lv~ 283 (557)
T TIGR00906 248 DAIATTGEEVK-NPQRAIPIGIVTSLLVCFVAYFLMS 283 (557)
T ss_pred HHHHHhHHhcc-CccccccHHHHHHHHHHHHHHHHHH
Confidence 45677777765 5578999999999887777665543
No 106
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.34 E-value=2.5e+02 Score=26.12 Aligned_cols=7 Identities=0% Similarity=-0.026 Sum_probs=3.3
Q ss_pred eeEEecC
Q 011475 356 DFYISDF 362 (485)
Q Consensus 356 dFyIsD~ 362 (485)
..+|.|.
T Consensus 124 ~V~Vv~v 130 (140)
T COG1585 124 RVEVVGV 130 (140)
T ss_pred EEEEEEe
Confidence 3445554
No 107
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.32 E-value=63 Score=28.93 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhh
Q 011475 254 VLFSCVAALFGW 265 (485)
Q Consensus 254 ~lfa~vaa~~iW 265 (485)
++|++++.+|++
T Consensus 6 ~iii~~i~l~~~ 17 (130)
T PF12273_consen 6 AIIIVAILLFLF 17 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 108
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=22.32 E-value=87 Score=36.17 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=30.2
Q ss_pred cCCChhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHHHHHH
Q 011475 215 RNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALF 263 (485)
Q Consensus 215 ~~~p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~ 263 (485)
.+.-..=.|+.++|++.|+= =+++.++|+++|++++.+++.+.++.
T Consensus 644 ~~~~~iP~w~~~ll~vLGwN---E~m~vLrnPl~~~l~li~~~~~~~~~ 689 (742)
T PF05879_consen 644 SSNTQIPPWMYLLLLVLGWN---EFMAVLRNPLYFTLLLILGGGFYVLY 689 (742)
T ss_pred cCCCCCCHHHHHHHHHHhHH---HHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 33333337888888888842 24567899999998877766444333
No 109
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=22.26 E-value=1.4e+02 Score=28.19 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 011475 229 FVMGFIAG 236 (485)
Q Consensus 229 ~~~g~~~g 236 (485)
-+..+++|
T Consensus 95 sgls~~~g 102 (169)
T TIGR00267 95 DGFSTFMG 102 (169)
T ss_pred HHHHHHHH
Confidence 33334444
No 110
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=22.17 E-value=46 Score=36.01 Aligned_cols=119 Identities=24% Similarity=0.400 Sum_probs=69.5
Q ss_pred eeeeeeeeceeeeeeEEecCCCceeEEEecCCC-ceeeee--ecccee-eecCCCCCCCCHHHHHHHHhc---CCCCC-C
Q 011475 343 FTWGLRSLERRAVDFYISDFQSGLRALVKTGYG-ARVTPY--VDDSLA-IDVNPGKEELSPEFIRWLAER---NLSSD-D 414 (485)
Q Consensus 343 ~~W~l~~~Er~~~dFyIsD~~sG~RALVkaG~G-arV~P~--Vees~V-vD~~~~~kd~S~el~~wL~er---nLSsd-~ 414 (485)
..|+..|.-.+ |.|- +.+.++|+| .+++|. =|+..| +|++.=..---|.|+.||++. +.++| .
T Consensus 259 ~~W~QaH~~AR---fvi~------kv~lEageglvkie~T~g~Dd~~vrLDrSkI~svG~pal~~FL~rLqvykstgDve 329 (417)
T KOG3675|consen 259 KKWGQAHMRAR---FVIM------KVLLEAGEGLVKIEPTTGSDDARVRLDRSKIDSVGRPALEDFLRRLQVYKSTGDVE 329 (417)
T ss_pred ccccchhhhhh---hhhh------hhHHHhcCCeeEeeccCCCcceeeeecHhhhhhcccHhHHHHHHHHHhhccccccc
Confidence 45888887744 7776 678899999 777777 233333 443322234556777777765 55556 6
Q ss_pred ceeEEEeeeccCCCE-----EEEEE-EEEecCceeeEeCCCCccccccceeeeeccccccceE
Q 011475 415 RIMRLKEGYIKEGST-----VSVMG-VVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIV 471 (485)
Q Consensus 415 r~mRykEgiI~eGs~-----VsVmG-vv~r~~~vlmI~pP~E~~stgcqw~r~~lP~~~~glv 471 (485)
++++|-|+|=.++++ +..=- ++.|++.--.|++|...+ .|....=..+-.+..|+|
T Consensus 330 ~G~~lye~y~tV~d~p~e~~ltlRDivl~rk~~rkliVQpNt~l-e~sdVqL~eYe~s~aG~I 391 (417)
T KOG3675|consen 330 GGSKLYEGYATVTDAPPECFLTLRDIVLLRKESRKLIVQPNTRL-EGSDVQLLEYEASAAGLI 391 (417)
T ss_pred ccceeeeccccccCCCccchhhHHHHHHhhccchheEeccceee-cCCceEEEEeccchhHHH
Confidence 788999999888773 11100 122333333455554444 444444444445555555
No 111
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.14 E-value=1.6e+02 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcC
Q 011475 249 LIVVVVLFSCVAALFGWNTFWGRKAIISYIARY 281 (485)
Q Consensus 249 l~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~ 281 (485)
.+..+.+|++-+++++|-+.-++|.-....++.
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~k~~~e~aa~l 44 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRNKKRFEEAANL 44 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhHHHHHcc
Confidence 344444555555556664432333333333333
No 112
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=22.13 E-value=1.8e+02 Score=24.75 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHhhhheeeh-------eehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 219 KPIFWSLILLFVMGFIAGGFILG-------AVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 219 ~~~~~~~~~~~~~g~~~g~f~l~-------av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
+.+.|+.+++.+++.+.+.|-.. .... ++.++.+++.+++.++.|+.+
T Consensus 15 ~~~Y~l~li~i~l~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~l~~~i~~Ri~ 69 (90)
T PF14110_consen 15 KVLYWLGLILIVLSGLSGIFSGFMAGMGFSFGGG--FLGLLLGPLGFLLGIILWRIM 69 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777666665544432211 1111 122223666677777777654
No 113
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.11 E-value=1.1e+02 Score=25.63 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCc
Q 011475 249 LIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPD 283 (485)
Q Consensus 249 l~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pd 283 (485)
+++++.+.++++++|+ +++-.+..|++.|-
T Consensus 2 ~iilali~G~~~Gff~-----ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 2 LIILALIVGAVIGFFI-----ARKYMEKQLKENPP 31 (64)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCC
Confidence 3444444444554443 45556777777775
No 114
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=22.08 E-value=1.4e+02 Score=35.78 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCE
Q 011475 244 HNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQF 294 (485)
Q Consensus 244 ~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~ 294 (485)
..|+--+++++++.+.+++-.|.-|.+++++. .|++.-.....-.|||+.
T Consensus 79 ~~~~~~~iIl~vv~in~~i~~~QE~~aekal~-aL~~l~~~~~~ViRdg~~ 128 (1053)
T TIGR01523 79 HDWIEGGVISAIIALNILIGFIQEYKAEKTMD-SLKNLASPMAHVIRNGKS 128 (1053)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHhccCCCceEEEeCCee
Confidence 34444444444444444444556665565553 344433333333444443
No 115
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=22.04 E-value=2.1e+02 Score=28.30 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhheee
Q 011475 222 FWSLILLFVMGFIAGGFIL 240 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l 240 (485)
.|.+..++.+.+++-+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (356)
T PRK10755 9 LLTIGLILLVFQLISVFWL 27 (356)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555544
No 116
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.03 E-value=1.1e+02 Score=30.05 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=5.2
Q ss_pred HHHHhhhhee
Q 011475 230 VMGFIAGGFI 239 (485)
Q Consensus 230 ~~g~~~g~f~ 239 (485)
-.|.++|.++
T Consensus 244 piG~~ig~~~ 253 (317)
T PF02535_consen 244 PIGALIGIAI 253 (317)
T ss_pred HHHHHHHHHh
Confidence 3455555555
No 117
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=21.88 E-value=1.8e+02 Score=29.11 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCC
Q 011475 248 LLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQ 293 (485)
Q Consensus 248 ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq 293 (485)
++.+.++.+.+..+..+||-|+ |+++-+..+|.+ -|-...|+
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~-D~~iD~~~~Rt~---~RPl~sG~ 79 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGI-ERDIDKVMSRTS---KRPTPVGL 79 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchH-hcCCCCCCCCCC---CCCcCCCC
Confidence 4445556666677889999886 555544433333 34444554
No 118
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.73 E-value=2e+02 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCChhhHHHHHHHHHHHHhhhhee-------------ehe-ehhhHHHHHHHHHHHHHHHHHhhhhhhchhh
Q 011475 216 NFPKPIFWSLILLFVMGFIAGGFI-------------LGA-VHNAILLIVVVVLFSCVAALFGWNTFWGRKA 273 (485)
Q Consensus 216 ~~p~~~~~~~~~~~~~g~~~g~f~-------------l~a-v~~~~ll~~~~~lfa~vaa~~iWn~~~~~r~ 273 (485)
+.|.. .|++.++|+++.+|.+++ +.+ ---.+++|.|+++.=+++-.++|-.+.++..
T Consensus 185 p~~~~-~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~~g 255 (372)
T KOG2927|consen 185 PRPLM-WQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGKHG 255 (372)
T ss_pred CCchh-HHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34443 566667777776665443 211 1112334556666666666677766655443
No 119
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.33 E-value=91 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.8
Q ss_pred cccccCCCCCEEEEEEEE
Q 011475 284 AELRNAKNGQFVKISGVV 301 (485)
Q Consensus 284 s~l~sa~dGq~VKItGvV 301 (485)
.++..+..|..|++.|+.
T Consensus 48 ~~~~GL~~gs~V~~~GV~ 65 (359)
T COG1463 48 DDAGGLYVGSPVRYRGVK 65 (359)
T ss_pred cccccCCCCCceEEcCEE
Confidence 366789999999999864
No 120
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=21.24 E-value=1.9e+02 Score=29.29 Aligned_cols=38 Identities=29% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhh
Q 011475 231 MGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTF 268 (485)
Q Consensus 231 ~g~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~ 268 (485)
.|++.|+=+..-|+=+.++||+++-+++++..+.++-.
T Consensus 18 ~g~~~gg~~~~l~~~~~~lIV~GGt~ga~l~~~~~~~~ 55 (254)
T PRK08990 18 MAMVLGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQF 55 (254)
T ss_pred HHHHhcCcHHHHhCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 35555665556688888999999998888866666444
No 121
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=21.23 E-value=78 Score=32.73 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=36.3
Q ss_pred hheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhhHhhhhhcCCccccc
Q 011475 236 GGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWG-RKAIISYIARYPDAELR 287 (485)
Q Consensus 236 g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~l~Rfl~r~Pds~l~ 287 (485)
|+=+.+-+|=+.+||++++.++++...+=++.... -+.+...|+++...+..
T Consensus 24 Gg~~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~~~k~~~~~ 76 (266)
T COG1291 24 GGSLGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFRKPKKEDYV 76 (266)
T ss_pred CCceeeeeccchhheeechhhHHHHhcCcHHHHHHHHHHHHHHHhcCchhhHH
Confidence 33366778999999999999888888888877744 33455556655544443
No 122
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=21.18 E-value=56 Score=31.44 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHhhhhee
Q 011475 220 PIFWSLILLFVMGFIAGGFI 239 (485)
Q Consensus 220 ~~~~~~~~~~~~g~~~g~f~ 239 (485)
.++++++++.++||++|.++
T Consensus 3 ~~~~~~~~~~~lg~~~g~~l 22 (191)
T PRK05113 3 AIWIAVAALSLLALVFGAIL 22 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766543
No 123
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=20.94 E-value=99 Score=31.88 Aligned_cols=33 Identities=21% Similarity=0.549 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHHHhhhheeeheehhhHHHHH
Q 011475 218 PKPIFWSLILLFVMGFIAGGFILGAVHNAILLIV 251 (485)
Q Consensus 218 p~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~ 251 (485)
||.+.|+.+.+++++++.|.++. ...++.+|++
T Consensus 87 ~~~v~~~~~~~~~ia~~~Gl~L~-~~~g~~~l~i 119 (317)
T PRK13387 87 PRNVLTVILLMYVVAAILGVYLC-MNTSWLLLVI 119 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcHHHHHH
Confidence 67889999999999999888654 4666665544
No 124
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=20.91 E-value=1.1e+02 Score=31.14 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHHhhhheeeh
Q 011475 218 PKPIFWSLILLFVMGFIAGGFILG 241 (485)
Q Consensus 218 p~~~~~~~~~~~~~g~~~g~f~l~ 241 (485)
||.+.++.+++++++++.|.++..
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~ 99 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLAL 99 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999987764
No 125
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.70 E-value=1e+02 Score=34.98 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHH-------HhhhheeeheehhhHHHHHHHHHHHHHHHHHhhhhhhc-hhh-H-hhhhhc
Q 011475 221 IFWSLILLFVMG-------FIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWG-RKA-I-ISYIAR 280 (485)
Q Consensus 221 ~~~~~~~~~~~g-------~~~g~f~l~av~~~~ll~~~~~lfa~vaa~~iWn~~~~-~r~-l-~Rfl~r 280 (485)
+=|+=++||+.| |-.|+-----|+++-++.-++..+++++++.+|-.|.. +.- + .|.+++
T Consensus 239 lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~ 308 (599)
T PF06609_consen 239 LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD 308 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc
Confidence 345555555555 33444433468999999999999999999999977644 333 3 566554
No 126
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.63 E-value=1.5e+02 Score=30.23 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhheeeh
Q 011475 224 SLILLFVMGFIAGGFILG 241 (485)
Q Consensus 224 ~~~~~~~~g~~~g~f~l~ 241 (485)
+-++++.+||+.++++++
T Consensus 237 ~g~~~~~~~~~~~~~~~~ 254 (325)
T PRK10714 237 LGSIIAIGGFSLAVLLVV 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556677777776553
No 127
>COG3601 Predicted membrane protein [Function unknown]
Probab=20.38 E-value=1.3e+02 Score=29.84 Aligned_cols=51 Identities=27% Similarity=0.273 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhhheeeheehhhHHHHH---------------HHHHHHHHHHHHhhhhhhchhh
Q 011475 221 IFWSLILLFVMGFIAGGFILGAVHNAILLIV---------------VVVLFSCVAALFGWNTFWGRKA 273 (485)
Q Consensus 221 ~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~---------------~~~lfa~vaa~~iWn~~~~~r~ 273 (485)
.+=+++..|.||+.||-|++ .++|..+++. +++.|+.++ .++|+.-.+.+.
T Consensus 40 ~iP~Lig~~~lGp~ag~~vl-lvk~iL~~l~~g~~~~~iG~~mNfiag~~fv~~~-~~~~k~~ks~~~ 105 (186)
T COG3601 40 DIPALIGYFLLGPGAGIFVL-LVKNILLYLLSGPVGDPIGPPMNFIAGGSFVLIA-ALIYKKKKSTKN 105 (186)
T ss_pred HhHHHHHHHHhccchHHHHH-HHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 45578899999999998876 4677665543 344444444 677765544433
No 128
>PHA03049 IMV membrane protein; Provisional
Probab=20.10 E-value=1.1e+02 Score=26.02 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhhhchhh
Q 011475 252 VVVLFSCVAALFGWNTFWGRKA 273 (485)
Q Consensus 252 ~~~lfa~vaa~~iWn~~~~~r~ 273 (485)
.+++.++++++++|.+|.++++
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3445567778889988866544
Done!