Query 011475
Match_columns 485
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 65.7 4.1 0.00014 30.4 2.8 29 246-274 11-39 (44)
2 2ks1_B Epidermal growth factor 63.6 3 0.0001 31.1 1.6 29 246-274 12-40 (44)
3 2jwa_A Receptor tyrosine-prote 48.4 17 0.00057 27.2 3.5 26 247-273 14-39 (44)
4 3udc_A Small-conductance mecha 30.1 55 0.0019 31.3 4.9 47 247-299 93-139 (285)
5 2knc_B Integrin beta-3; transm 26.0 68 0.0023 26.1 4.0 24 260-283 27-53 (79)
6 1wn9_A The hypothetical protei 25.9 61 0.0021 29.1 4.0 62 355-430 30-100 (131)
7 4djk_A Probable glutamate/gamm 25.3 73 0.0025 31.4 5.0 36 199-235 217-252 (511)
8 2vpz_C Hypothetical membrane s 25.3 82 0.0028 29.7 5.1 22 222-243 16-37 (253)
9 2vv5_A MSCS, small-conductance 25.2 96 0.0033 29.7 5.6 44 249-298 96-139 (286)
10 3rlf_F Maltose transport syste 25.0 70 0.0024 33.6 5.0 41 219-259 13-53 (514)
11 3uaf_A TTR-52; beta barrel/san 22.6 42 0.0015 29.0 2.3 16 293-308 3-18 (117)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=65.69 E-value=4.1 Score=30.40 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhchhhH
Q 011475 246 AILLIVVVVLFSCVAALFGWNTFWGRKAI 274 (485)
Q Consensus 246 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l 274 (485)
+|..-|+++++++++.++.|-+||++|..
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555666666666666777677776544
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.64 E-value=3 Score=31.09 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhchhhH
Q 011475 246 AILLIVVVVLFSCVAALFGWNTFWGRKAI 274 (485)
Q Consensus 246 ~~ll~~~~~lfa~vaa~~iWn~~~~~r~l 274 (485)
+|..-|+++++++++.+++|-+||++|..
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 45556666666666666777677766543
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.36 E-value=17 Score=27.21 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhh
Q 011475 247 ILLIVVVVLFSCVAALFGWNTFWGRKA 273 (485)
Q Consensus 247 ~ll~~~~~lfa~vaa~~iWn~~~~~r~ 273 (485)
|...|++ ++.+++.+++|-+|++||-
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 3344444 5666666777777766543
No 4
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=30.11 E-value=55 Score=31.33 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCEEEEEE
Q 011475 247 ILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 299 (485)
Q Consensus 247 ~ll~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~VKItG 299 (485)
--|++.+++.++++++-..+.. ..|+...=-.--+.++.||+|+|.|
T Consensus 93 ~~l~a~~g~~g~aig~a~q~~l------~n~~~Gi~i~~~~pf~vGD~I~i~~ 139 (285)
T 3udc_A 93 TSLLAVAGIGSLAIGFGAQNLV------KDMISGFFIIFEDQFSVGDYVTING 139 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH------HHHHHHHHHHHTTSCCTTCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhCCccCCCEEEECC
Confidence 3455555666666655444332 2222221111124789999999854
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.02 E-value=68 Score=26.08 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHHHhhhhh---hchhhHhhhhhcCCc
Q 011475 260 AALFGWNTF---WGRKAIISYIARYPD 283 (485)
Q Consensus 260 aa~~iWn~~---~~~r~l~Rfl~r~Pd 283 (485)
+.+++|.++ .-||+-.||-+....
T Consensus 27 lllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 27 AALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336677654 336666777655443
No 6
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=25.93 E-value=61 Score=29.09 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=39.9
Q ss_pred eeeEEecCCCc-----eeEEEecCCCceeeeeeccceeee-cCCCCC---CCCHHHHHHHHhcCCCCCCceeEEEeeecc
Q 011475 355 VDFYISDFQSG-----LRALVKTGYGARVTPYVDDSLAID-VNPGKE---ELSPEFIRWLAERNLSSDDRIMRLKEGYIK 425 (485)
Q Consensus 355 ~dFyIsD~~sG-----~RALVkaG~GarV~P~Vees~VvD-~~~~~k---d~S~el~~wL~ernLSsd~r~mRykEgiI~ 425 (485)
.-.+|+|.|+. ..++|..|.. +. ..-| +.|... .+=.||..||.+++ ..+.+|-+|.
T Consensus 30 ~v~liTDwQd~R~~ARYa~ll~~gk~----~l----lt~dAFGPafg~G~~ALaELv~wl~~~G------~~~f~EaVl~ 95 (131)
T 1wn9_A 30 KVYLITDWQDKRDQARYALLLHTGKK----DL----LVPDAFGPAFPGGEEALSELVGLLLAQG------ARRFYEAVVS 95 (131)
T ss_dssp EEEEEEECCSSGGGCCEEEEEECSSC----EE----EEEEEESTTSTTHHHHHHHHHHHHHHTT------CCEEEEEEEC
T ss_pred eEEEEecccccchhhhhhheeecCCc----cc----ccccccCCCcccHHHHHHHHHHHHHHcC------CchhhhhccC
Confidence 34578888764 3455554422 22 3334 555542 44568999999999 5569999999
Q ss_pred CCCEE
Q 011475 426 EGSTV 430 (485)
Q Consensus 426 eGs~V 430 (485)
+++-.
T Consensus 96 p~e~~ 100 (131)
T 1wn9_A 96 PGEMT 100 (131)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 88643
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=25.29 E-value=73 Score=31.44 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=26.4
Q ss_pred CcceeeccCCcccccccCCChhhHHHHHHHHHHHHhh
Q 011475 199 NQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIA 235 (485)
Q Consensus 199 ~~avt~l~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 235 (485)
-.+++++.+|-+ .-++++||+++++++..+++.++.
T Consensus 217 ~e~~~~~a~E~k-~P~k~ip~ai~~~~~~~~~~y~~~ 252 (511)
T 4djk_A 217 VEASATHVNEMS-NPGRDYPLAMLLLMVAAICLSSVG 252 (511)
T ss_dssp GGGGTGGGSSSS-CCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CcccchhHHHHHHHHHHHHHHHHH
Confidence 456677777754 346899999999888777766544
No 8
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=25.29 E-value=82 Score=29.74 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhheeehee
Q 011475 222 FWSLILLFVMGFIAGGFILGAV 243 (485)
Q Consensus 222 ~~~~~~~~~~g~~~g~f~l~av 243 (485)
.|.+.-+|..|+.+|+|++++.
T Consensus 16 ~~i~~y~f~~g~aaG~~~~~~~ 37 (253)
T 2vpz_C 16 WTNALHFVLVGLAGGVALLAAL 37 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888999999998864
No 9
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=25.18 E-value=96 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHhhhhhcCCccccccCCCCCEEEEE
Q 011475 249 LIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 298 (485)
Q Consensus 249 l~~~~~lfa~vaa~~iWn~~~~~r~l~Rfl~r~Pds~l~sa~dGq~VKIt 298 (485)
|++.+++.++++++-..+.. ..|+...=-.--+-++.||+|+|.
T Consensus 96 l~a~~g~~g~aig~a~q~~l------~n~~sGi~i~~~~pf~vGD~I~i~ 139 (286)
T 2vv5_A 96 VIAVLGAAGLVVGLALQGSL------SNLAAGVLLVMFRPFRAGEYVDLG 139 (286)
T ss_dssp HHHHHHHHHHHHHHHHTHHH------HHHHHHHHHHTTCSSCTTCEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHhcCCccCCCEEEEC
Confidence 34445555555555444332 222222111122568999999864
No 10
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=25.03 E-value=70 Score=33.56 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHhhhheeeheehhhHHHHHHHHHHHHH
Q 011475 219 KPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCV 259 (485)
Q Consensus 219 ~~~~~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~lfa~v 259 (485)
|.+-|+++.++.+-.+-+++.+.+..+|.+.++.+++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (514)
T 3rlf_F 13 DALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAG 53 (514)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHH
Confidence 45678888888888888999999999998877666554443
No 11
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=22.61 E-value=42 Score=29.04 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=14.1
Q ss_pred CEEEEEEEEEeCCccc
Q 011475 293 QFVKISGVVTCGNVPL 308 (485)
Q Consensus 293 q~VKItGvVtCG~~PL 308 (485)
|-|-|+|++.|++.|-
T Consensus 3 qsV~V~G~L~C~~~Pa 18 (117)
T 3uaf_A 3 SCLMATGVLKCPTDPE 18 (117)
T ss_dssp EEEEEEEEEECTTCGG
T ss_pred EEEEEEEEEEeCCccC
Confidence 6699999999999983
Done!