Query 011475
Match_columns 485
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 08:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 39.6 12 0.0009 33.9 4.4 32 223-254 5-36 (248)
2 d1wnaa1 d.319.1.1 (A:1-127) Hy 33.7 18 0.0013 30.2 4.0 64 355-432 30-102 (127)
3 d2pi2a1 b.40.4.3 (A:44-171) Re 33.4 14 0.001 29.6 3.3 19 285-303 73-91 (128)
4 d2pi2a1 b.40.4.3 (A:44-171) Re 19.7 1.6E+02 0.012 22.9 7.5 24 422-445 75-98 (128)
5 d1gy6a_ d.17.4.2 (A:) Nuclear 15.8 25 0.0018 27.9 1.4 42 266-307 42-93 (125)
6 d1ltla_ b.40.4.11 (A:) DNA rep 15.0 3.2E+02 0.024 23.0 9.6 20 284-303 95-114 (239)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 14.2 72 0.0052 23.8 3.7 14 252-265 9-22 (158)
8 d2k7ia1 d.348.1.1 (A:1-62) Unc 12.8 40 0.0029 24.5 1.7 16 338-353 9-24 (62)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 12.1 92 0.0067 19.8 3.0 20 251-270 5-24 (30)
10 d1ltla_ b.40.4.11 (A:) DNA rep 12.0 62 0.0045 27.9 3.1 17 287-303 202-218 (239)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=39.58 E-value=12 Score=33.90 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhheeeheehhhHHHHHHHH
Q 011475 223 WSLILLFVMGFIAGGFILGAVHNAILLIVVVV 254 (485)
Q Consensus 223 ~~~~~~~~~g~~~g~f~l~av~~~~ll~~~~~ 254 (485)
|+++.++..=.+-.+++|.+..+|++++++++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~ 36 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLI 36 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 55555555555566677777777766554433
No 2
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=33.75 E-value=18 Score=30.21 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=41.7
Q ss_pred eeeEEecCCCc-----eeEEEecCCCceeeeeeccceeee-cCCCC---CCCCHHHHHHHHhcCCCCCCceeEEEeeecc
Q 011475 355 VDFYISDFQSG-----LRALVKTGYGARVTPYVDDSLAID-VNPGK---EELSPEFIRWLAERNLSSDDRIMRLKEGYIK 425 (485)
Q Consensus 355 ~dFyIsD~~sG-----~RALVkaG~GarV~P~Vees~VvD-~~~~~---kd~S~el~~wL~ernLSsd~r~mRykEgiI~ 425 (485)
.-.||+|.|.. .-+||..|... -.+-| +.|.. ..+=.||.+||.+++ .-+.+|-+|.
T Consensus 30 ~~~lITDwQdqR~qArya~lv~~Gk~~--------ll~~dAFGPafp~G~~ALaELv~wl~~~G------~r~~~EaVv~ 95 (127)
T d1wnaa1 30 KVYLITDWQDKRDQARYALLLHTGKKD--------LLVPDAFGPAFPGGEEALSELVGLLLAQG------ARRFYEAVVS 95 (127)
T ss_dssp EEEEEEECCSSTTSCCEEEEEECSSCE--------EEEEEEESTTSTTHHHHHHHHHHHHHHTT------CCEEEEEEEC
T ss_pred eEEEEecccchhhhhhhHHHhhcCCcc--------cccccccCCCCccHHHHHHHHHHHHHHcC------CchhhhhhcC
Confidence 45688888764 44566666432 23334 44443 345568999999999 4478999999
Q ss_pred CCCEEEE
Q 011475 426 EGSTVSV 432 (485)
Q Consensus 426 eGs~VsV 432 (485)
+|+...|
T Consensus 96 p~e~~~l 102 (127)
T d1wnaa1 96 PGEMTAL 102 (127)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 8875443
No 3
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.43 E-value=14 Score=29.59 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.1
Q ss_pred ccccCCCCCEEEEEEEEEe
Q 011475 285 ELRNAKNGQFVKISGVVTC 303 (485)
Q Consensus 285 ~l~sa~dGq~VKItGvVtC 303 (485)
+-..+++|.||||.|.++.
T Consensus 73 ~~~~i~~g~yVrV~G~lk~ 91 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLRS 91 (128)
T ss_dssp -CCCCCTTCEEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEEe
Confidence 3457899999999999987
No 4
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.65 E-value=1.6e+02 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=18.3
Q ss_pred eeccCCCEEEEEEEEEecCceeeE
Q 011475 422 GYIKEGSTVSVMGVVQRNDNVLMI 445 (485)
Q Consensus 422 giI~eGs~VsVmGvv~r~~~vlmI 445 (485)
..|++|.-|-|.|.++--.+.-.|
T Consensus 75 ~~i~~g~yVrV~G~lk~f~~~~~i 98 (128)
T d2pi2a1 75 TVVPPETYVKVAGHLRSFQNKKSL 98 (128)
T ss_dssp CCCCTTCEEEEEEEEEEETTEEEE
T ss_pred ccccCCCEEEEEEEEEeeCCeEEE
Confidence 368899999999999765555443
No 5
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.76 E-value=25 Score=27.90 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=28.3
Q ss_pred hhhhchhhHhhhhhcCCccc----ccc------CCCCCEEEEEEEEEeCCcc
Q 011475 266 NTFWGRKAIISYIARYPDAE----LRN------AKNGQFVKISGVVTCGNVP 307 (485)
Q Consensus 266 n~~~~~r~l~Rfl~r~Pds~----l~s------a~dGq~VKItGvVtCG~~P 307 (485)
+.+.+..++..+|...|..+ +.+ ...+=.|.|+|.+++++.|
T Consensus 42 ~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~ili~V~G~~~~~~~~ 93 (125)
T d1gy6a_ 42 QQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDP 93 (125)
T ss_dssp EEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSC
T ss_pred ccccCHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEEEEEEEEEEECCCC
Confidence 33466788899999998653 222 2345578889999885543
No 6
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.96 E-value=3.2e+02 Score=23.03 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.2
Q ss_pred cccccCCCCCEEEEEEEEEe
Q 011475 284 AELRNAKNGQFVKISGVVTC 303 (485)
Q Consensus 284 s~l~sa~dGq~VKItGvVtC 303 (485)
.+|++..-|++|.|.|+|+-
T Consensus 95 r~l~s~~igkLv~v~GiV~r 114 (239)
T d1ltla_ 95 RELRSKFIGKFVAVDGIVRK 114 (239)
T ss_dssp GGCCGGGTTSEEEEEEEEEE
T ss_pred hccchhhhccEEEEEEEEEE
Confidence 47778888999999999965
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=14.16 E-value=72 Score=23.76 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHhh
Q 011475 252 VVVLFSCVAALFGW 265 (485)
Q Consensus 252 ~~~lfa~vaa~~iW 265 (485)
|++++++++++.+-
T Consensus 9 ViaIIgILaaia~P 22 (158)
T d2pila_ 9 VIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333433333333
No 8
>d2k7ia1 d.348.1.1 (A:1-62) Uncharacterized protein Atu0232 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=12.82 E-value=40 Score=24.49 Aligned_cols=16 Identities=0% Similarity=0.200 Sum_probs=10.9
Q ss_pred CCCcceeeeeeeecee
Q 011475 338 PTHRRFTWGLRSLERR 353 (485)
Q Consensus 338 ~~h~r~~W~l~~~Er~ 353 (485)
++++.++|+|++.+.+
T Consensus 9 d~~g~~rfrL~a~Ng~ 24 (62)
T d2k7ia1 9 DKAGEYRFRFKASNGE 24 (62)
T ss_dssp CTTSCEEEEECCTTSC
T ss_pred CCCCCEEEEEEeCCCC
Confidence 4556778887776655
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.05 E-value=92 Score=19.77 Aligned_cols=20 Identities=35% Similarity=0.793 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 011475 251 VVVVLFSCVAALFGWNTFWG 270 (485)
Q Consensus 251 ~~~~lfa~vaa~~iWn~~~~ 270 (485)
.-+.+|+.++++|.+.++|+
T Consensus 5 ~yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred ehHHHHHHHHHHHHHHHHhc
Confidence 34567788888888877765
No 10
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.03 E-value=62 Score=27.94 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=15.3
Q ss_pred ccCCCCCEEEEEEEEEe
Q 011475 287 RNAKNGQFVKISGVVTC 303 (485)
Q Consensus 287 ~sa~dGq~VKItGvVtC 303 (485)
..+++||.|+|+|.+++
T Consensus 202 d~~~pGd~V~i~GI~~~ 218 (239)
T d1ltla_ 202 DTLTPGDIVRVTGTLRT 218 (239)
T ss_dssp TCCCTTCEEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEEE
Confidence 56899999999999976
Done!