Query 011476
Match_columns 485
No_of_seqs 393 out of 3548
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 2.1E-61 4.5E-66 455.4 29.7 370 1-376 1-370 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 2.7E-48 5.9E-53 378.2 32.4 300 57-379 2-305 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 3.2E-44 7E-49 364.3 34.7 311 56-377 8-320 (424)
4 PRK13512 coenzyme A disulfide 100.0 1.3E-38 2.7E-43 324.8 30.5 273 58-376 1-280 (438)
5 PRK09754 phenylpropionate diox 100.0 4.8E-38 1E-42 316.9 31.6 270 58-377 3-279 (396)
6 TIGR03169 Nterm_to_SelD pyridi 100.0 1.1E-37 2.3E-42 311.7 31.5 279 60-378 1-284 (364)
7 PRK14989 nitrite reductase sub 100.0 6.2E-38 1.3E-42 338.1 31.2 273 58-379 3-287 (847)
8 PRK04965 NADH:flavorubredoxin 100.0 2.2E-37 4.7E-42 310.4 31.2 271 58-379 2-279 (377)
9 PRK09564 coenzyme A disulfide 100.0 1.9E-37 4.1E-42 318.0 30.6 277 59-377 1-286 (444)
10 TIGR02374 nitri_red_nirB nitri 100.0 2E-37 4.3E-42 334.8 30.4 271 61-379 1-278 (785)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.6E-37 3.4E-42 310.7 26.4 281 57-390 3-326 (454)
12 TIGR01424 gluta_reduc_2 glutat 100.0 7.5E-36 1.6E-40 305.3 25.7 275 58-391 2-318 (446)
13 PRK06416 dihydrolipoamide dehy 100.0 2E-35 4.3E-40 304.3 26.7 283 57-391 3-326 (462)
14 PLN02507 glutathione reductase 100.0 4.8E-35 1E-39 301.8 28.3 270 56-379 23-344 (499)
15 TIGR01421 gluta_reduc_1 glutat 100.0 4E-35 8.7E-40 299.6 26.5 274 58-391 2-320 (450)
16 PRK06467 dihydrolipoamide dehy 100.0 5.7E-35 1.2E-39 300.2 27.7 285 57-393 3-331 (471)
17 PRK07251 pyridine nucleotide-d 100.0 6.4E-35 1.4E-39 298.3 27.9 269 58-379 3-297 (438)
18 PRK05249 soluble pyridine nucl 100.0 9.4E-35 2E-39 299.3 28.4 282 57-392 4-328 (461)
19 PTZ00058 glutathione reductase 100.0 1.5E-34 3.3E-39 299.1 28.6 270 56-376 46-376 (561)
20 PRK06116 glutathione reductase 100.0 7.6E-35 1.7E-39 298.7 26.2 273 58-391 4-320 (450)
21 PLN02546 glutathione reductase 100.0 9.6E-35 2.1E-39 300.8 26.7 273 57-389 78-403 (558)
22 KOG0405 Pyridine nucleotide-di 100.0 2.3E-35 5.1E-40 271.2 19.2 310 56-424 18-394 (478)
23 PRK06370 mercuric reductase; V 100.0 1.3E-34 2.8E-39 297.9 27.0 276 58-390 5-325 (463)
24 PRK08010 pyridine nucleotide-d 100.0 1.2E-34 2.6E-39 296.5 26.0 270 58-380 3-299 (441)
25 PRK05976 dihydrolipoamide dehy 100.0 1.2E-34 2.6E-39 298.8 25.8 287 57-392 3-336 (472)
26 TIGR02053 MerA mercuric reduct 100.0 1.5E-34 3.2E-39 297.7 25.5 278 59-390 1-320 (463)
27 TIGR01423 trypano_reduc trypan 100.0 1.9E-34 4.1E-39 295.5 25.9 286 57-390 2-342 (486)
28 PRK14694 putative mercuric red 100.0 4E-34 8.6E-39 294.3 27.9 281 56-392 4-328 (468)
29 PRK10262 thioredoxin reductase 100.0 5.6E-34 1.2E-38 279.7 24.4 286 56-393 4-307 (321)
30 PRK06115 dihydrolipoamide dehy 100.0 8.5E-34 1.8E-38 291.3 26.8 271 58-379 3-319 (466)
31 TIGR01438 TGR thioredoxin and 100.0 1.1E-33 2.5E-38 290.5 27.1 281 58-390 2-335 (484)
32 TIGR01292 TRX_reduct thioredox 100.0 1.1E-33 2.5E-38 275.2 25.6 278 59-394 1-294 (300)
33 PRK13748 putative mercuric red 100.0 9.5E-34 2.1E-38 298.7 26.8 279 57-391 97-420 (561)
34 PRK07818 dihydrolipoamide dehy 100.0 2.1E-33 4.5E-38 289.0 28.4 279 58-390 4-327 (466)
35 KOG1336 Monodehydroascorbate/f 100.0 8.3E-34 1.8E-38 273.9 23.6 274 56-379 72-354 (478)
36 PRK07845 flavoprotein disulfid 100.0 1.2E-33 2.7E-38 290.1 26.5 270 58-379 1-318 (466)
37 PRK12831 putative oxidoreducta 100.0 7.6E-34 1.7E-38 290.3 24.0 292 54-395 136-455 (464)
38 PRK06912 acoL dihydrolipoamide 100.0 2.6E-33 5.7E-38 287.5 27.6 277 60-391 2-322 (458)
39 COG0492 TrxB Thioredoxin reduc 100.0 1.7E-33 3.7E-38 268.9 23.9 278 57-394 2-294 (305)
40 TIGR03140 AhpF alkyl hydropero 100.0 6.8E-34 1.5E-38 295.2 22.4 279 56-394 210-506 (515)
41 TIGR01350 lipoamide_DH dihydro 100.0 4.8E-33 1.1E-37 286.7 27.3 281 59-392 2-325 (461)
42 COG1251 NirB NAD(P)H-nitrite r 100.0 1.1E-33 2.4E-38 284.8 21.3 275 58-380 3-284 (793)
43 PRK14727 putative mercuric red 100.0 6.6E-33 1.4E-37 285.7 27.5 281 57-392 15-339 (479)
44 TIGR01316 gltA glutamate synth 100.0 1.1E-33 2.3E-38 288.8 21.3 289 55-395 130-444 (449)
45 PRK07846 mycothione reductase; 100.0 1.4E-32 3E-37 280.8 29.1 261 59-379 2-306 (451)
46 PRK15317 alkyl hydroperoxide r 100.0 7.7E-33 1.7E-37 287.7 25.3 279 56-394 209-505 (517)
47 PRK06292 dihydrolipoamide dehy 100.0 1E-32 2.2E-37 284.1 25.7 275 58-390 3-322 (460)
48 TIGR03143 AhpF_homolog putativ 100.0 9.3E-33 2E-37 288.7 24.6 280 57-394 3-302 (555)
49 PTZ00052 thioredoxin reductase 100.0 5.6E-32 1.2E-36 279.3 29.3 277 58-390 5-332 (499)
50 PRK12779 putative bifunctional 100.0 1.1E-32 2.4E-37 300.0 24.3 290 56-396 304-622 (944)
51 PRK06327 dihydrolipoamide dehy 100.0 5.8E-32 1.3E-36 278.6 28.3 286 58-393 4-341 (475)
52 PRK09853 putative selenate red 100.0 2.9E-32 6.4E-37 291.9 26.8 280 56-395 537-836 (1019)
53 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.2E-31 2.7E-36 273.4 29.0 262 72-377 1-273 (427)
54 PTZ00153 lipoamide dehydrogena 100.0 4.1E-31 8.8E-36 276.9 28.3 271 58-379 116-476 (659)
55 TIGR03452 mycothione_red mycot 100.0 9.7E-31 2.1E-35 267.5 29.1 262 58-379 2-309 (452)
56 PRK11749 dihydropyrimidine deh 100.0 1.3E-31 2.9E-36 274.8 22.8 282 55-394 137-445 (457)
57 KOG1335 Dihydrolipoamide dehyd 100.0 8.2E-32 1.8E-36 250.9 18.6 272 57-380 38-359 (506)
58 TIGR03315 Se_ygfK putative sel 100.0 2.5E-31 5.4E-36 286.3 25.1 281 56-396 535-835 (1012)
59 PRK12778 putative bifunctional 100.0 9.5E-32 2.1E-36 291.0 22.0 289 55-395 428-744 (752)
60 PRK12814 putative NADPH-depend 100.0 4.6E-31 9.9E-36 280.2 22.7 280 56-395 191-495 (652)
61 PRK12810 gltD glutamate syntha 100.0 4.8E-31 1E-35 271.1 18.9 293 55-394 140-458 (471)
62 PRK12775 putative trifunctiona 100.0 1.6E-30 3.5E-35 285.6 21.6 291 56-395 428-749 (1006)
63 KOG4716 Thioredoxin reductase 100.0 2.1E-31 4.6E-36 244.1 11.9 303 56-407 17-394 (503)
64 PRK12770 putative glutamate sy 100.0 7.8E-30 1.7E-34 253.2 23.1 299 56-394 16-343 (352)
65 KOG0404 Thioredoxin reductase 100.0 6.5E-30 1.4E-34 221.7 17.2 281 58-388 8-306 (322)
66 PRK12769 putative oxidoreducta 100.0 6E-30 1.3E-34 272.9 20.4 292 56-395 325-646 (654)
67 TIGR01318 gltD_gamma_fam gluta 100.0 4.4E-29 9.6E-34 255.7 24.6 290 56-394 139-459 (467)
68 PLN02852 ferredoxin-NADP+ redu 100.0 2.8E-29 6.1E-34 254.2 21.6 310 55-394 23-415 (491)
69 COG3634 AhpF Alkyl hydroperoxi 100.0 2E-29 4.4E-34 232.0 14.8 283 55-392 208-506 (520)
70 PRK12809 putative oxidoreducta 100.0 9.8E-29 2.1E-33 262.4 21.0 291 56-395 308-629 (639)
71 TIGR01317 GOGAT_sm_gam glutama 100.0 2.9E-28 6.4E-33 250.6 21.3 295 56-394 141-472 (485)
72 PRK13984 putative oxidoreducta 100.0 9.4E-28 2E-32 254.6 23.5 290 55-395 280-596 (604)
73 TIGR01372 soxA sarcosine oxida 100.0 1.9E-26 4.1E-31 255.2 28.5 288 57-395 162-466 (985)
74 PRK12771 putative glutamate sy 100.0 1E-26 2.3E-31 244.3 24.6 280 55-395 134-438 (564)
75 COG0446 HcaD Uncharacterized N 99.9 5.3E-25 1.2E-29 224.0 25.7 267 61-379 1-281 (415)
76 PLN02172 flavin-containing mon 99.9 2.3E-23 4.9E-28 212.0 23.8 263 56-382 8-336 (461)
77 KOG0399 Glutamate synthase [Am 99.9 1E-24 2.3E-29 224.9 8.5 322 41-395 1768-2114(2142)
78 KOG1346 Programmed cell death 99.9 3.5E-23 7.5E-28 195.1 17.9 279 56-380 176-492 (659)
79 COG0493 GltD NADPH-dependent g 99.9 1.3E-23 2.7E-28 211.0 15.4 300 50-395 115-445 (457)
80 KOG3851 Sulfide:quinone oxidor 99.9 5.5E-23 1.2E-27 187.8 14.1 298 56-388 37-347 (446)
81 PRK06567 putative bifunctional 99.9 3E-22 6.5E-27 212.3 20.8 288 53-395 378-764 (1028)
82 PF07992 Pyr_redox_2: Pyridine 99.8 1.3E-21 2.8E-26 178.8 2.1 141 60-202 1-148 (201)
83 KOG2755 Oxidoreductase [Genera 99.8 1.2E-20 2.7E-25 168.0 7.5 260 60-377 1-322 (334)
84 PF00743 FMO-like: Flavin-bind 99.8 4.7E-19 1E-23 182.8 18.7 160 58-245 1-205 (531)
85 PF13738 Pyr_redox_3: Pyridine 99.8 1.5E-18 3.2E-23 158.9 7.7 166 62-272 1-202 (203)
86 PTZ00188 adrenodoxin reductase 99.7 5.1E-17 1.1E-21 162.2 16.0 291 56-382 37-421 (506)
87 PF13434 K_oxygenase: L-lysine 99.7 6.8E-17 1.5E-21 158.3 14.4 237 58-333 2-339 (341)
88 KOG1800 Ferredoxin/adrenodoxin 99.7 5E-17 1.1E-21 152.6 12.6 303 58-395 20-401 (468)
89 COG2072 TrkA Predicted flavopr 99.7 8E-16 1.7E-20 156.2 16.5 178 56-272 6-210 (443)
90 KOG1399 Flavin-containing mono 99.7 9E-16 1.9E-20 153.7 14.2 220 56-333 4-267 (448)
91 COG1148 HdrA Heterodisulfide r 99.6 5.5E-14 1.2E-18 136.1 23.7 320 55-391 121-535 (622)
92 COG3486 IucD Lysine/ornithine 99.6 1.3E-13 2.8E-18 131.8 21.6 279 56-376 3-387 (436)
93 PRK05329 anaerobic glycerol-3- 99.5 6.4E-14 1.4E-18 140.4 13.4 140 226-380 218-395 (422)
94 PF00070 Pyr_redox: Pyridine n 99.4 5.7E-12 1.2E-16 96.6 11.0 68 225-306 1-68 (80)
95 COG2081 Predicted flavoprotein 99.1 1.3E-09 2.9E-14 104.9 15.6 69 277-348 110-186 (408)
96 COG4529 Uncharacterized protei 99.0 2.3E-08 5E-13 98.9 20.2 170 58-270 1-231 (474)
97 PF01266 DAO: FAD dependent ox 99.0 5.3E-08 1.2E-12 96.8 19.2 90 250-348 121-212 (358)
98 PF03486 HI0933_like: HI0933-l 98.9 1.1E-08 2.3E-13 102.7 12.2 81 266-348 95-185 (409)
99 PRK09897 hypothetical protein; 98.9 1.9E-08 4.1E-13 104.1 13.0 158 58-245 1-213 (534)
100 PRK12842 putative succinate de 98.9 2.6E-09 5.6E-14 112.9 6.7 106 224-345 158-283 (574)
101 PLN02463 lycopene beta cyclase 98.8 2.8E-08 6E-13 101.2 11.2 109 56-176 26-170 (447)
102 TIGR02032 GG-red-SF geranylger 98.8 2.7E-08 5.9E-13 96.2 9.2 109 59-175 1-148 (295)
103 PRK07843 3-ketosteroid-delta-1 98.8 2.6E-08 5.7E-13 104.8 9.7 107 224-346 161-278 (557)
104 PRK04176 ribulose-1,5-biphosph 98.7 4.2E-08 9.1E-13 92.6 8.2 117 57-175 24-173 (257)
105 TIGR03378 glycerol3P_GlpB glyc 98.7 1.6E-06 3.4E-11 86.5 19.5 101 277-380 262-397 (419)
106 COG0644 FixC Dehydrogenases (f 98.7 7.8E-08 1.7E-12 97.2 9.9 111 57-175 2-152 (396)
107 PRK12409 D-amino acid dehydrog 98.7 1.6E-06 3.4E-11 88.3 19.4 35 59-93 2-36 (410)
108 PF00070 Pyr_redox: Pyridine n 98.7 5.7E-08 1.2E-12 74.3 6.3 77 60-148 1-79 (80)
109 PRK13977 myosin-cross-reactive 98.7 3.5E-07 7.5E-12 94.1 13.8 42 56-97 20-65 (576)
110 COG0579 Predicted dehydrogenas 98.7 2.8E-07 6.2E-12 91.7 12.6 95 247-348 124-220 (429)
111 PF01134 GIDA: Glucose inhibit 98.6 7.2E-08 1.6E-12 94.8 7.8 103 60-173 1-150 (392)
112 PRK06847 hypothetical protein; 98.6 2.2E-07 4.8E-12 93.3 10.3 109 57-176 3-164 (375)
113 PLN02697 lycopene epsilon cycl 98.6 2.4E-07 5.1E-12 96.0 10.4 108 56-175 106-248 (529)
114 TIGR01790 carotene-cycl lycope 98.6 1.7E-07 3.7E-12 94.7 9.0 104 60-175 1-141 (388)
115 TIGR00292 thiazole biosynthesi 98.6 2.3E-07 5E-12 87.3 9.0 116 57-174 20-169 (254)
116 PRK00711 D-amino acid dehydrog 98.6 2.7E-06 5.8E-11 86.8 17.5 63 278-347 201-265 (416)
117 PRK10157 putative oxidoreducta 98.6 2.6E-07 5.5E-12 94.3 9.7 38 57-94 4-41 (428)
118 PRK05192 tRNA uridine 5-carbox 98.6 2.9E-07 6.2E-12 95.6 9.9 41 57-97 3-44 (618)
119 PF01494 FAD_binding_3: FAD bi 98.5 1.7E-06 3.6E-11 85.9 14.6 55 279-333 112-170 (356)
120 PRK10015 oxidoreductase; Provi 98.5 4.7E-07 1E-11 92.4 10.4 39 57-95 4-42 (429)
121 TIGR03364 HpnW_proposed FAD de 98.5 3E-06 6.4E-11 84.8 16.0 34 59-92 1-34 (365)
122 PRK06134 putative FAD-binding 98.5 1.5E-07 3.2E-12 99.7 6.7 42 56-97 10-51 (581)
123 PRK07364 2-octaprenyl-6-methox 98.5 5.4E-07 1.2E-11 91.9 10.5 37 57-93 17-53 (415)
124 PRK06912 acoL dihydrolipoamide 98.5 5.9E-07 1.3E-11 92.6 10.8 103 58-179 170-272 (458)
125 PRK07251 pyridine nucleotide-d 98.5 5.8E-07 1.3E-11 92.2 10.5 101 57-178 156-256 (438)
126 COG1249 Lpd Pyruvate/2-oxoglut 98.5 9.2E-07 2E-11 89.6 11.7 104 56-179 171-276 (454)
127 TIGR01292 TRX_reduct thioredox 98.5 1.4E-06 3E-11 84.6 12.6 91 225-333 2-110 (300)
128 PF05834 Lycopene_cycl: Lycope 98.5 6E-07 1.3E-11 90.0 10.1 105 60-176 1-143 (374)
129 TIGR01377 soxA_mon sarcosine o 98.5 8.2E-06 1.8E-10 82.1 18.5 89 250-348 118-209 (380)
130 TIGR02023 BchP-ChlP geranylger 98.5 6.3E-07 1.4E-11 90.4 10.3 32 59-90 1-32 (388)
131 COG0029 NadB Aspartate oxidase 98.5 5E-06 1.1E-10 82.5 16.0 32 60-92 9-40 (518)
132 TIGR03385 CoA_CoA_reduc CoA-di 98.5 7.1E-07 1.5E-11 91.3 10.5 100 58-178 137-236 (427)
133 PRK06416 dihydrolipoamide dehy 98.5 7.3E-07 1.6E-11 92.2 10.6 105 58-179 172-276 (462)
134 PRK05976 dihydrolipoamide dehy 98.5 9.6E-07 2.1E-11 91.5 10.8 104 58-179 180-285 (472)
135 PRK11101 glpA sn-glycerol-3-ph 98.4 4.3E-06 9.3E-11 87.9 15.6 93 248-347 122-219 (546)
136 TIGR01350 lipoamide_DH dihydro 98.4 9.7E-07 2.1E-11 91.3 10.6 104 57-178 169-272 (461)
137 PTZ00383 malate:quinone oxidor 98.4 1.4E-06 3.1E-11 89.7 11.7 64 278-348 211-282 (497)
138 PLN00093 geranylgeranyl diphos 98.4 9.6E-07 2.1E-11 90.4 10.1 38 54-91 35-72 (450)
139 PRK06184 hypothetical protein; 98.4 1E-06 2.2E-11 92.1 10.2 35 58-92 3-37 (502)
140 PRK08773 2-octaprenyl-3-methyl 98.4 1.4E-06 3.1E-11 88.1 10.8 37 56-92 4-40 (392)
141 PRK04965 NADH:flavorubredoxin 98.4 1.3E-06 2.7E-11 87.9 10.4 99 58-177 141-241 (377)
142 TIGR03329 Phn_aa_oxid putative 98.4 9E-06 1.9E-10 84.0 16.7 54 277-333 182-235 (460)
143 COG1635 THI4 Ribulose 1,5-bisp 98.4 2.9E-07 6.4E-12 81.4 4.7 65 58-126 30-95 (262)
144 COG1233 Phytoene dehydrogenase 98.4 4.6E-07 9.9E-12 93.9 7.0 41 57-97 2-42 (487)
145 TIGR01373 soxB sarcosine oxida 98.4 2.5E-05 5.4E-10 79.4 19.6 53 278-333 183-238 (407)
146 TIGR00275 flavoprotein, HI0933 98.4 2.9E-06 6.3E-11 85.8 12.0 84 260-348 86-179 (400)
147 PRK06126 hypothetical protein; 98.4 8.4E-06 1.8E-10 86.1 15.9 36 57-92 6-41 (545)
148 PRK07608 ubiquinone biosynthes 98.4 1.6E-06 3.5E-11 87.5 10.0 37 57-93 4-40 (388)
149 TIGR02053 MerA mercuric reduct 98.4 1.7E-06 3.8E-11 89.4 10.3 105 58-179 166-270 (463)
150 PRK07233 hypothetical protein; 98.4 2.2E-06 4.7E-11 87.9 10.9 37 60-96 1-37 (434)
151 PRK09754 phenylpropionate diox 98.4 1.3E-06 2.8E-11 88.4 9.1 99 58-177 144-243 (396)
152 PF13454 NAD_binding_9: FAD-NA 98.4 1.4E-06 3.1E-11 75.8 8.1 102 62-173 1-155 (156)
153 PRK04176 ribulose-1,5-biphosph 98.4 1.2E-05 2.7E-10 75.9 15.0 135 225-376 27-224 (257)
154 PRK06327 dihydrolipoamide dehy 98.4 2.1E-06 4.6E-11 88.9 10.7 105 57-179 182-288 (475)
155 COG1232 HemY Protoporphyrinoge 98.4 3.8E-06 8.2E-11 84.4 12.0 38 59-96 1-40 (444)
156 PRK08244 hypothetical protein; 98.4 1.7E-06 3.7E-11 90.2 10.0 35 58-92 2-36 (493)
157 PRK06370 mercuric reductase; V 98.4 1.9E-06 4.1E-11 89.1 10.0 103 57-178 170-274 (463)
158 PRK05714 2-octaprenyl-3-methyl 98.3 2.1E-06 4.6E-11 87.2 10.2 34 58-91 2-35 (405)
159 TIGR02734 crtI_fam phytoene de 98.3 4.4E-06 9.5E-11 87.4 12.7 53 278-332 219-273 (502)
160 PRK07236 hypothetical protein; 98.3 2.4E-06 5.1E-11 86.2 10.3 36 57-92 5-40 (386)
161 PRK09564 coenzyme A disulfide 98.3 3.2E-06 7E-11 87.0 11.5 101 225-339 2-117 (444)
162 PRK07333 2-octaprenyl-6-methox 98.3 1.8E-06 4E-11 87.6 9.4 35 58-92 1-37 (403)
163 TIGR01320 mal_quin_oxido malat 98.3 2.1E-05 4.5E-10 81.3 17.2 69 277-349 177-250 (483)
164 PRK06834 hypothetical protein; 98.3 2.6E-06 5.6E-11 88.3 10.5 110 58-176 3-157 (488)
165 PRK11728 hydroxyglutarate oxid 98.3 2.1E-06 4.4E-11 86.9 9.4 34 58-91 2-37 (393)
166 TIGR02731 phytoene_desat phyto 98.3 1.7E-05 3.7E-10 81.8 16.3 38 60-97 1-38 (453)
167 PLN02464 glycerol-3-phosphate 98.3 2.7E-05 5.9E-10 83.0 18.1 94 247-347 199-304 (627)
168 PF12831 FAD_oxidored: FAD dep 98.3 3.1E-07 6.7E-12 93.7 3.3 106 60-173 1-148 (428)
169 PRK13512 coenzyme A disulfide 98.3 2.3E-06 5.1E-11 87.7 9.7 97 58-178 148-244 (438)
170 PLN02612 phytoene desaturase 98.3 2.9E-05 6.4E-10 82.0 17.8 44 54-97 89-132 (567)
171 TIGR00292 thiazole biosynthesi 98.3 2.9E-05 6.3E-10 73.1 15.7 135 225-376 23-223 (254)
172 TIGR01789 lycopene_cycl lycope 98.3 3.7E-06 8E-11 84.0 10.1 104 60-176 1-139 (370)
173 PRK05257 malate:quinone oxidor 98.3 6.6E-05 1.4E-09 77.7 19.5 68 278-349 183-256 (494)
174 PRK08163 salicylate hydroxylas 98.3 3.5E-06 7.5E-11 85.4 10.0 37 57-93 3-39 (396)
175 PF13450 NAD_binding_8: NAD(P) 98.3 4.7E-07 1E-11 66.5 2.7 35 63-97 1-35 (68)
176 PRK07818 dihydrolipoamide dehy 98.3 4E-06 8.8E-11 86.7 10.6 104 57-178 171-276 (466)
177 PRK08013 oxidoreductase; Provi 98.3 2.1E-05 4.6E-10 79.7 15.6 35 58-92 3-37 (400)
178 PRK06116 glutathione reductase 98.3 3.4E-06 7.5E-11 86.9 9.7 100 58-179 167-269 (450)
179 PRK05249 soluble pyridine nucl 98.3 3.5E-06 7.5E-11 87.2 9.7 99 58-178 175-275 (461)
180 PRK11445 putative oxidoreducta 98.3 4.8E-06 1E-10 82.8 10.4 34 58-92 1-34 (351)
181 TIGR01424 gluta_reduc_2 glutat 98.3 3.5E-06 7.6E-11 86.6 9.6 99 58-178 166-266 (446)
182 TIGR02732 zeta_caro_desat caro 98.3 3.4E-05 7.3E-10 79.8 16.8 37 60-96 1-37 (474)
183 COG0446 HcaD Uncharacterized N 98.3 2.6E-06 5.7E-11 86.5 8.5 98 58-176 136-238 (415)
184 COG2509 Uncharacterized FAD-de 98.3 4.4E-05 9.6E-10 75.0 16.2 77 270-348 165-243 (486)
185 PF01946 Thi4: Thi4 family; PD 98.3 6.1E-07 1.3E-11 79.9 3.2 67 57-126 16-82 (230)
186 PRK07846 mycothione reductase; 98.3 4.7E-06 1E-10 85.7 10.2 101 58-179 166-266 (451)
187 PRK06481 fumarate reductase fl 98.2 7.2E-06 1.6E-10 85.5 11.7 39 57-95 60-98 (506)
188 PRK14694 putative mercuric red 98.2 5.2E-06 1.1E-10 85.9 10.5 100 58-179 178-277 (468)
189 PRK06115 dihydrolipoamide dehy 98.2 5.4E-06 1.2E-10 85.7 10.4 105 57-178 173-279 (466)
190 TIGR01988 Ubi-OHases Ubiquinon 98.2 5.4E-06 1.2E-10 83.5 10.2 33 60-92 1-33 (385)
191 PRK11259 solA N-methyltryptoph 98.2 3.8E-06 8.2E-11 84.4 9.1 34 58-91 3-36 (376)
192 PRK08020 ubiF 2-octaprenyl-3-m 98.2 4.4E-06 9.5E-11 84.5 9.5 35 57-91 4-38 (391)
193 PRK08243 4-hydroxybenzoate 3-m 98.2 5.4E-06 1.2E-10 83.8 10.1 35 58-92 2-36 (392)
194 PRK07190 hypothetical protein; 98.2 5.9E-06 1.3E-10 85.6 10.5 35 58-92 5-39 (487)
195 COG3380 Predicted NAD/FAD-depe 98.2 2.1E-06 4.5E-11 78.4 6.0 37 59-95 2-38 (331)
196 PRK13339 malate:quinone oxidor 98.2 1.4E-05 3.1E-10 82.1 12.7 40 57-96 5-46 (497)
197 PRK07045 putative monooxygenas 98.2 4.9E-06 1.1E-10 84.0 9.2 37 57-93 4-40 (388)
198 PRK08010 pyridine nucleotide-d 98.2 6.8E-06 1.5E-10 84.4 10.3 101 57-178 157-257 (441)
199 TIGR01421 gluta_reduc_1 glutat 98.2 4.8E-06 1E-10 85.6 9.2 100 58-178 166-268 (450)
200 PRK08401 L-aspartate oxidase; 98.2 8.8E-06 1.9E-10 84.0 11.0 33 59-91 2-34 (466)
201 PRK09126 hypothetical protein; 98.2 9.3E-06 2E-10 82.1 11.0 35 58-92 3-37 (392)
202 COG0654 UbiH 2-polyprenyl-6-me 98.2 5.4E-06 1.2E-10 83.6 9.1 33 58-90 2-34 (387)
203 TIGR01984 UbiH 2-polyprenyl-6- 98.2 6.8E-06 1.5E-10 82.8 9.8 33 60-92 1-34 (382)
204 TIGR02028 ChlP geranylgeranyl 98.2 7.7E-06 1.7E-10 82.7 10.1 34 59-92 1-34 (398)
205 PRK07494 2-octaprenyl-6-methox 98.2 6E-06 1.3E-10 83.4 9.2 35 58-92 7-41 (388)
206 PRK07845 flavoprotein disulfid 98.2 8.1E-06 1.8E-10 84.4 10.1 100 58-179 177-278 (466)
207 PRK06185 hypothetical protein; 98.2 1E-05 2.2E-10 82.3 10.6 35 57-91 5-39 (407)
208 PRK08132 FAD-dependent oxidore 98.2 9.2E-06 2E-10 85.8 10.3 37 56-92 21-57 (547)
209 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.2E-05 2.6E-10 84.7 11.1 37 56-92 8-44 (538)
210 PLN02507 glutathione reductase 98.2 1E-05 2.2E-10 84.2 10.3 102 58-179 203-304 (499)
211 KOG2820 FAD-dependent oxidored 98.1 4.8E-05 1E-09 71.8 13.4 89 247-344 122-217 (399)
212 KOG0029 Amine oxidase [Seconda 98.1 1.6E-06 3.6E-11 89.0 4.1 43 54-96 11-53 (501)
213 PLN02172 flavin-containing mon 98.1 2.3E-05 4.9E-10 80.5 12.2 103 223-339 10-177 (461)
214 PRK06753 hypothetical protein; 98.1 8.1E-06 1.7E-10 82.0 8.7 34 59-92 1-34 (373)
215 PRK13748 putative mercuric red 98.1 1.1E-05 2.3E-10 85.7 10.0 99 58-178 270-368 (561)
216 PLN02661 Putative thiazole syn 98.1 1.5E-05 3.2E-10 77.5 9.9 39 57-95 91-130 (357)
217 PRK05732 2-octaprenyl-6-methox 98.1 1.5E-05 3.2E-10 80.7 10.4 33 58-90 3-38 (395)
218 PRK14727 putative mercuric red 98.1 1.3E-05 2.8E-10 83.2 10.0 100 58-179 188-287 (479)
219 TIGR01423 trypano_reduc trypan 98.1 1.1E-05 2.4E-10 83.5 9.5 100 57-178 186-291 (486)
220 TIGR03452 mycothione_red mycot 98.1 1.6E-05 3.4E-10 81.9 10.6 101 58-179 169-269 (452)
221 TIGR00136 gidA glucose-inhibit 98.1 2.2E-05 4.7E-10 81.7 11.5 33 59-91 1-33 (617)
222 PRK07588 hypothetical protein; 98.1 1.1E-05 2.4E-10 81.5 9.3 34 59-92 1-34 (391)
223 PRK06475 salicylate hydroxylas 98.1 9.8E-06 2.1E-10 82.2 8.8 35 58-92 2-36 (400)
224 COG3075 GlpB Anaerobic glycero 98.1 5.7E-05 1.2E-09 71.0 12.8 55 278-332 258-314 (421)
225 TIGR02374 nitri_red_nirB nitri 98.1 1.2E-05 2.5E-10 88.3 9.7 100 58-178 140-241 (785)
226 PRK06996 hypothetical protein; 98.1 1.3E-05 2.9E-10 81.1 9.5 38 54-91 7-48 (398)
227 PRK15317 alkyl hydroperoxide r 98.1 3.3E-05 7.1E-10 81.0 12.6 93 224-333 212-320 (517)
228 COG1252 Ndh NADH dehydrogenase 98.1 5.3E-06 1.1E-10 82.2 6.3 98 58-178 155-265 (405)
229 TIGR01989 COQ6 Ubiquinone bios 98.1 5.8E-05 1.3E-09 77.4 14.1 33 59-91 1-37 (437)
230 PRK08849 2-octaprenyl-3-methyl 98.1 1E-05 2.2E-10 81.6 8.4 33 59-91 4-36 (384)
231 COG2907 Predicted NAD/FAD-bind 98.1 4.5E-05 9.8E-10 72.2 11.9 69 57-126 7-85 (447)
232 PF00890 FAD_binding_2: FAD bi 98.1 3.5E-05 7.5E-10 78.6 12.4 56 278-333 141-201 (417)
233 PRK14989 nitrite reductase sub 98.1 1.7E-05 3.7E-10 87.1 10.5 101 224-339 4-115 (847)
234 TIGR01813 flavo_cyto_c flavocy 98.1 1.9E-05 4.1E-10 81.1 10.3 36 60-95 1-37 (439)
235 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.6E-05 3.5E-10 80.2 9.6 35 58-92 2-36 (390)
236 PRK10262 thioredoxin reductase 98.1 2.1E-05 4.6E-10 77.2 10.1 104 57-178 145-251 (321)
237 PRK07121 hypothetical protein; 98.1 2.7E-05 5.8E-10 81.2 11.4 39 57-95 19-57 (492)
238 PRK06467 dihydrolipoamide dehy 98.1 1.6E-05 3.5E-10 82.2 9.7 103 58-179 174-278 (471)
239 COG3349 Uncharacterized conser 98.1 2.9E-06 6.3E-11 85.0 3.8 39 59-97 1-39 (485)
240 PTZ00058 glutathione reductase 98.1 2.3E-05 5E-10 82.2 10.6 102 58-178 237-339 (561)
241 PRK01747 mnmC bifunctional tRN 98.0 1.6E-05 3.6E-10 85.8 9.8 34 58-91 260-293 (662)
242 PRK05868 hypothetical protein; 98.0 3.1E-05 6.8E-10 77.6 11.1 35 58-92 1-35 (372)
243 TIGR01438 TGR thioredoxin and 98.0 1.9E-05 4.2E-10 81.8 9.9 101 58-178 180-282 (484)
244 PF13738 Pyr_redox_3: Pyridine 98.0 4.2E-05 9.1E-10 69.6 11.1 98 227-341 1-144 (203)
245 PRK08274 tricarballylate dehyd 98.0 2.5E-05 5.4E-10 80.9 10.6 34 58-91 4-37 (466)
246 PLN02985 squalene monooxygenas 98.0 3.9E-05 8.4E-10 80.0 12.0 37 55-91 40-76 (514)
247 PRK07573 sdhA succinate dehydr 98.0 4.2E-05 9E-10 81.9 12.4 36 57-92 34-69 (640)
248 PRK06617 2-octaprenyl-6-methox 98.0 1.7E-05 3.6E-10 79.7 8.9 32 59-90 2-33 (374)
249 PF00743 FMO-like: Flavin-bind 98.0 6.3E-05 1.4E-09 78.4 13.2 138 224-376 2-194 (531)
250 PRK06292 dihydrolipoamide dehy 98.0 1.7E-05 3.8E-10 81.9 9.1 104 57-179 168-272 (460)
251 TIGR03140 AhpF alkyl hydropero 98.0 5E-05 1.1E-09 79.5 12.5 94 223-333 212-321 (515)
252 PTZ00318 NADH dehydrogenase-li 98.0 2.1E-05 4.6E-10 80.2 9.6 94 59-176 174-281 (424)
253 PRK12266 glpD glycerol-3-phosp 98.0 2.9E-05 6.4E-10 81.0 10.7 36 57-92 5-40 (508)
254 TIGR03219 salicylate_mono sali 98.0 1.6E-05 3.5E-10 81.0 8.3 35 59-93 1-36 (414)
255 PTZ00052 thioredoxin reductase 98.0 2.8E-05 6E-10 81.0 10.2 99 58-179 182-282 (499)
256 PF07992 Pyr_redox_2: Pyridine 98.0 1.4E-05 3E-10 72.6 7.1 139 225-378 1-200 (201)
257 COG1148 HdrA Heterodisulfide r 98.0 9.7E-05 2.1E-09 72.9 12.7 73 220-306 121-206 (622)
258 TIGR03169 Nterm_to_SelD pyridi 98.0 2.2E-05 4.7E-10 78.6 8.7 94 225-333 1-105 (364)
259 PRK08850 2-octaprenyl-6-methox 98.0 1.8E-05 4E-10 80.3 8.3 33 58-90 4-36 (405)
260 KOG1336 Monodehydroascorbate/f 98.0 2.9E-05 6.3E-10 76.7 9.2 103 58-181 213-319 (478)
261 COG0665 DadA Glycine/D-amino a 98.0 2.6E-05 5.6E-10 78.7 9.2 36 56-91 2-37 (387)
262 PRK07538 hypothetical protein; 98.0 2.8E-05 6.1E-10 79.2 9.2 34 59-92 1-34 (413)
263 PRK06847 hypothetical protein; 98.0 0.0001 2.2E-09 74.1 13.1 97 224-339 5-165 (375)
264 KOG1335 Dihydrolipoamide dehyd 98.0 2.8E-05 6.1E-10 74.5 8.1 106 56-178 209-317 (506)
265 COG0445 GidA Flavin-dependent 98.0 7.7E-06 1.7E-10 82.0 4.5 107 58-175 4-158 (621)
266 TIGR02032 GG-red-SF geranylger 97.9 0.00011 2.4E-09 70.9 12.6 93 225-333 2-146 (295)
267 PRK06175 L-aspartate oxidase; 97.9 5.9E-05 1.3E-09 77.1 10.9 36 58-94 4-39 (433)
268 PRK12779 putative bifunctional 97.9 2.6E-05 5.7E-10 86.5 8.7 90 221-333 304-402 (944)
269 PRK09853 putative selenate red 97.9 4.7E-05 1E-09 83.7 10.5 88 221-333 537-633 (1019)
270 PRK06452 sdhA succinate dehydr 97.9 5.2E-05 1.1E-09 80.2 10.6 36 57-92 4-39 (566)
271 TIGR01316 gltA glutamate synth 97.9 2.8E-05 6.2E-10 79.9 8.3 89 221-333 131-228 (449)
272 PRK12770 putative glutamate sy 97.9 2.7E-05 5.8E-10 77.5 7.9 98 222-333 17-128 (352)
273 PRK11749 dihydropyrimidine deh 97.9 2.3E-05 5.1E-10 80.8 7.4 89 221-333 138-235 (457)
274 COG0493 GltD NADPH-dependent g 97.9 2.6E-05 5.6E-10 79.2 7.5 88 222-333 122-218 (457)
275 TIGR01812 sdhA_frdA_Gneg succi 97.9 6E-05 1.3E-09 79.9 10.5 33 60-92 1-33 (566)
276 TIGR00551 nadB L-aspartate oxi 97.9 5.9E-05 1.3E-09 78.4 10.2 35 59-94 3-37 (488)
277 PRK05945 sdhA succinate dehydr 97.9 4.8E-05 1E-09 80.7 9.6 37 58-94 3-41 (575)
278 PRK07804 L-aspartate oxidase; 97.9 9E-05 2E-09 78.0 11.1 38 57-94 15-52 (541)
279 PLN00128 Succinate dehydrogena 97.9 0.00013 2.7E-09 78.0 12.3 35 58-92 50-84 (635)
280 PRK07803 sdhA succinate dehydr 97.9 5.6E-05 1.2E-09 80.8 9.6 37 57-93 7-43 (626)
281 TIGR01318 gltD_gamma_fam gluta 97.9 6.3E-05 1.4E-09 77.7 9.6 88 222-333 140-236 (467)
282 PRK11883 protoporphyrinogen ox 97.9 1E-05 2.2E-10 83.3 3.8 38 59-96 1-40 (451)
283 PTZ00153 lipoamide dehydrogena 97.9 5.3E-05 1.1E-09 80.7 9.2 110 58-179 312-431 (659)
284 PTZ00139 Succinate dehydrogena 97.8 0.00048 1E-08 73.5 16.3 55 278-332 166-226 (617)
285 TIGR02462 pyranose_ox pyranose 97.8 0.0004 8.6E-09 72.2 15.1 37 59-95 1-37 (544)
286 PRK08626 fumarate reductase fl 97.8 9.6E-05 2.1E-09 79.3 11.0 35 58-92 5-39 (657)
287 PRK12831 putative oxidoreducta 97.8 6.1E-05 1.3E-09 77.7 8.9 91 221-333 138-238 (464)
288 PRK06854 adenylylsulfate reduc 97.8 0.00085 1.8E-08 71.6 17.6 35 58-92 11-47 (608)
289 PRK06263 sdhA succinate dehydr 97.8 8.8E-05 1.9E-09 78.2 10.1 35 57-92 6-40 (543)
290 TIGR01317 GOGAT_sm_gam glutama 97.8 8.4E-05 1.8E-09 77.1 9.5 89 221-333 141-238 (485)
291 PLN02546 glutathione reductase 97.8 0.00011 2.4E-09 77.1 10.3 102 57-178 251-353 (558)
292 PLN02268 probable polyamine ox 97.8 1.6E-05 3.5E-10 81.6 4.0 39 59-97 1-39 (435)
293 PRK07236 hypothetical protein; 97.8 0.00018 4E-09 72.5 11.3 93 224-333 7-152 (386)
294 PRK08958 sdhA succinate dehydr 97.8 0.00051 1.1E-08 73.0 15.0 55 278-332 143-203 (588)
295 PF06039 Mqo: Malate:quinone o 97.8 8E-05 1.7E-09 73.9 8.3 94 279-376 182-292 (488)
296 PRK12778 putative bifunctional 97.8 8.1E-05 1.8E-09 81.6 9.1 90 221-333 429-527 (752)
297 PRK07208 hypothetical protein; 97.8 2E-05 4.4E-10 81.9 4.1 40 57-96 3-42 (479)
298 PRK06069 sdhA succinate dehydr 97.8 0.00076 1.6E-08 71.7 16.0 38 58-95 5-45 (577)
299 PLN02576 protoporphyrinogen ox 97.8 2.2E-05 4.8E-10 82.0 4.3 41 56-96 10-51 (496)
300 COG0578 GlpA Glycerol-3-phosph 97.7 0.00055 1.2E-08 70.1 14.0 67 277-347 163-233 (532)
301 PRK12775 putative trifunctiona 97.7 5.4E-05 1.2E-09 84.8 7.2 90 222-333 429-527 (1006)
302 PRK09078 sdhA succinate dehydr 97.7 0.00021 4.5E-09 76.1 11.2 35 57-91 11-45 (598)
303 KOG2495 NADH-dehydrogenase (ub 97.7 2.5E-05 5.5E-10 75.9 3.7 99 58-176 218-330 (491)
304 PLN02815 L-aspartate oxidase 97.7 0.00021 4.6E-09 75.6 11.0 38 57-95 28-65 (594)
305 PLN02852 ferredoxin-NADP+ redu 97.7 7.7E-05 1.7E-09 76.6 7.4 90 222-333 25-124 (491)
306 TIGR00562 proto_IX_ox protopor 97.7 2.6E-05 5.7E-10 80.7 4.1 39 58-96 2-44 (462)
307 KOG2853 Possible oxidoreductas 97.7 0.0018 3.9E-08 61.4 15.6 37 58-94 86-126 (509)
308 PRK12809 putative oxidoreducta 97.7 0.00012 2.5E-09 78.7 9.0 88 222-333 309-405 (639)
309 PRK07057 sdhA succinate dehydr 97.7 0.0003 6.5E-09 74.8 11.5 35 57-91 11-45 (591)
310 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 0.00018 4E-09 72.2 8.9 105 225-346 2-145 (433)
311 PRK08275 putative oxidoreducta 97.7 0.00019 4.2E-09 75.8 9.6 36 57-92 8-45 (554)
312 PRK12769 putative oxidoreducta 97.7 0.00017 3.6E-09 77.8 9.2 89 221-333 325-422 (654)
313 PF04820 Trp_halogenase: Trypt 97.6 8.9E-05 1.9E-09 76.1 6.6 31 60-90 1-34 (454)
314 PRK12810 gltD glutamate syntha 97.6 0.0002 4.4E-09 74.1 9.3 89 221-333 141-238 (471)
315 PRK08294 phenol 2-monooxygenas 97.6 0.00031 6.7E-09 75.2 11.0 35 57-91 31-66 (634)
316 TIGR03143 AhpF_homolog putativ 97.6 0.00048 1E-08 72.8 12.2 90 225-333 6-112 (555)
317 PTZ00188 adrenodoxin reductase 97.6 0.00016 3.5E-09 73.4 8.1 89 222-333 38-136 (506)
318 TIGR01176 fum_red_Fp fumarate 97.6 0.00028 6E-09 74.8 10.3 37 58-94 3-41 (580)
319 PRK08071 L-aspartate oxidase; 97.6 0.00033 7.1E-09 73.2 10.7 37 58-95 3-39 (510)
320 TIGR01811 sdhA_Bsu succinate d 97.6 0.00025 5.4E-09 75.5 9.9 31 61-91 1-31 (603)
321 PRK12416 protoporphyrinogen ox 97.6 4E-05 8.8E-10 79.3 3.9 39 58-96 1-45 (463)
322 TIGR03315 Se_ygfK putative sel 97.6 0.00017 3.8E-09 79.7 8.8 88 221-333 535-631 (1012)
323 TIGR02733 desat_CrtD C-3',4' d 97.6 4.3E-05 9.2E-10 79.7 3.9 39 59-97 2-40 (492)
324 PRK08205 sdhA succinate dehydr 97.6 0.00031 6.8E-09 74.6 10.3 34 58-92 5-38 (583)
325 PRK09231 fumarate reductase fl 97.6 0.00033 7.1E-09 74.4 10.1 37 58-94 4-42 (582)
326 PLN02529 lysine-specific histo 97.6 6.1E-05 1.3E-09 80.8 4.5 44 53-96 155-198 (738)
327 PLN02661 Putative thiazole syn 97.6 0.0026 5.7E-08 62.0 15.3 96 225-333 94-242 (357)
328 PRK01438 murD UDP-N-acetylmura 97.6 0.00034 7.3E-09 72.8 9.9 79 222-340 15-93 (480)
329 PRK08255 salicylyl-CoA 5-hydro 97.6 5.3E-05 1.1E-09 83.0 4.0 34 59-92 1-36 (765)
330 TIGR00031 UDP-GALP_mutase UDP- 97.6 6E-05 1.3E-09 74.9 4.0 38 59-96 2-39 (377)
331 PRK10157 putative oxidoreducta 97.6 0.0013 2.7E-08 67.4 13.7 50 281-333 111-162 (428)
332 KOG2665 Predicted FAD-dependen 97.6 0.0024 5.3E-08 59.9 13.9 42 54-95 44-87 (453)
333 COG1635 THI4 Ribulose 1,5-bisp 97.5 0.0023 5E-08 57.2 13.1 134 225-376 32-229 (262)
334 PF01134 GIDA: Glucose inhibit 97.5 0.00077 1.7E-08 66.7 11.3 92 225-333 1-150 (392)
335 PRK12814 putative NADPH-depend 97.5 0.00024 5.1E-09 76.5 8.5 89 221-333 191-288 (652)
336 PRK08244 hypothetical protein; 97.5 0.001 2.3E-08 69.3 13.1 94 225-333 4-157 (493)
337 PRK01438 murD UDP-N-acetylmura 97.5 0.00034 7.3E-09 72.8 9.4 84 57-183 15-98 (480)
338 PLN02463 lycopene beta cyclase 97.5 0.001 2.3E-08 67.9 12.2 92 225-334 30-168 (447)
339 COG0492 TrxB Thioredoxin reduc 97.5 0.0011 2.4E-08 63.9 11.7 94 225-336 5-116 (305)
340 KOG0399 Glutamate synthase [Am 97.5 0.00041 8.9E-09 74.7 9.2 90 220-333 1782-1880(2142)
341 PRK06184 hypothetical protein; 97.5 0.0015 3.2E-08 68.4 13.2 51 281-333 112-166 (502)
342 PRK05335 tRNA (uracil-5-)-meth 97.5 9.5E-05 2.1E-09 73.8 3.9 35 58-92 2-36 (436)
343 TIGR02730 carot_isom carotene 97.5 9.5E-05 2.1E-09 77.1 3.9 53 278-332 229-283 (493)
344 PRK07512 L-aspartate oxidase; 97.4 0.00053 1.2E-08 71.7 9.3 34 57-92 8-41 (513)
345 PLN02487 zeta-carotene desatur 97.4 0.00015 3.2E-09 76.1 5.0 40 57-96 74-113 (569)
346 PLN02328 lysine-specific histo 97.4 0.00013 2.7E-09 78.9 4.5 43 54-96 234-276 (808)
347 PRK08163 salicylate hydroxylas 97.4 0.0016 3.4E-08 65.9 12.2 48 283-333 114-164 (396)
348 PRK08773 2-octaprenyl-3-methyl 97.4 0.0022 4.9E-08 64.8 13.1 55 280-339 115-171 (392)
349 COG1231 Monoamine oxidase [Ami 97.4 0.00017 3.7E-09 71.3 4.6 42 56-97 5-46 (450)
350 TIGR01372 soxA sarcosine oxida 97.4 0.0015 3.3E-08 73.6 12.9 97 223-333 163-284 (985)
351 PLN02568 polyamine oxidase 97.4 0.00015 3.2E-09 76.0 4.4 39 58-96 5-48 (539)
352 PRK06834 hypothetical protein; 97.4 0.002 4.3E-08 67.0 12.6 92 225-333 5-154 (488)
353 PF01946 Thi4: Thi4 family; PD 97.4 0.007 1.5E-07 54.4 14.0 107 225-346 19-175 (230)
354 KOG2852 Possible oxidoreductas 97.4 0.0043 9.2E-08 57.7 13.0 40 56-95 8-53 (380)
355 PRK08243 4-hydroxybenzoate 3-m 97.4 0.0026 5.6E-08 64.3 13.0 95 225-333 4-161 (392)
356 KOG2404 Fumarate reductase, fl 97.4 0.00052 1.1E-08 64.5 7.1 37 60-96 11-47 (477)
357 PRK07333 2-octaprenyl-6-methox 97.4 0.0024 5.2E-08 64.7 12.7 52 279-333 112-165 (403)
358 PRK06183 mhpA 3-(3-hydroxyphen 97.3 0.0027 5.9E-08 67.0 13.3 53 281-333 116-172 (538)
359 PRK07364 2-octaprenyl-6-methox 97.3 0.0028 6E-08 64.6 12.9 55 283-339 126-183 (415)
360 PLN02676 polyamine oxidase 97.3 0.00019 4.1E-09 74.4 4.1 41 57-97 25-66 (487)
361 PRK07608 ubiquinone biosynthes 97.3 0.0027 5.9E-08 64.0 12.3 91 225-333 7-165 (388)
362 TIGR01789 lycopene_cycl lycope 97.3 0.0016 3.4E-08 65.2 10.3 93 226-335 2-138 (370)
363 PLN02927 antheraxanthin epoxid 97.3 0.00019 4.1E-09 76.1 3.8 36 56-91 79-114 (668)
364 KOG2311 NAD/FAD-utilizing prot 97.3 0.00037 7.9E-09 68.8 5.3 45 56-100 26-71 (679)
365 PLN02697 lycopene epsilon cycl 97.3 0.0025 5.5E-08 66.3 11.8 95 224-335 109-248 (529)
366 KOG2614 Kynurenine 3-monooxyge 97.3 0.00047 1E-08 67.3 5.9 38 58-95 2-39 (420)
367 PTZ00367 squalene epoxidase; P 97.3 0.00025 5.3E-09 74.6 4.4 35 57-91 32-66 (567)
368 KOG2415 Electron transfer flav 97.3 0.0002 4.2E-09 69.5 3.1 44 56-99 74-123 (621)
369 PRK07190 hypothetical protein; 97.2 0.0042 9.1E-08 64.5 13.1 50 281-333 112-163 (487)
370 PRK13369 glycerol-3-phosphate 97.2 0.0003 6.4E-09 73.5 4.6 41 56-96 4-44 (502)
371 PRK12771 putative glutamate sy 97.2 0.00072 1.6E-08 71.7 7.3 88 221-333 135-232 (564)
372 PRK09126 hypothetical protein; 97.2 0.0033 7.1E-08 63.5 11.7 46 289-339 122-169 (392)
373 PRK08132 FAD-dependent oxidore 97.2 0.0046 1E-07 65.4 13.2 55 282-339 129-187 (547)
374 PRK05868 hypothetical protein; 97.2 0.005 1.1E-07 61.8 12.8 47 290-341 116-164 (372)
375 PRK06753 hypothetical protein; 97.2 0.0051 1.1E-07 61.7 12.8 98 225-341 2-156 (373)
376 PRK05192 tRNA uridine 5-carbox 97.2 0.0028 6.2E-08 66.4 11.0 92 225-333 6-155 (618)
377 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.0051 1.1E-07 62.0 12.7 98 225-340 4-165 (387)
378 PRK05714 2-octaprenyl-3-methyl 97.2 0.0043 9.4E-08 63.0 12.2 48 283-333 117-166 (405)
379 COG0644 FixC Dehydrogenases (f 97.2 0.007 1.5E-07 61.2 13.7 93 225-333 5-150 (396)
380 TIGR01984 UbiH 2-polyprenyl-6- 97.2 0.0043 9.3E-08 62.4 12.1 50 281-333 108-160 (382)
381 PRK13984 putative oxidoreducta 97.2 0.00098 2.1E-08 71.4 7.7 89 221-333 281-378 (604)
382 KOG2844 Dimethylglycine dehydr 97.2 0.0066 1.4E-07 62.7 13.0 70 260-334 171-242 (856)
383 COG2072 TrkA Predicted flavopr 97.2 0.004 8.6E-08 63.8 11.8 136 224-376 9-186 (443)
384 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00036 7.9E-09 70.1 3.6 35 59-93 1-35 (433)
385 KOG0685 Flavin-containing amin 97.1 0.00045 9.7E-09 68.5 4.1 39 58-96 21-60 (498)
386 PF06100 Strep_67kDa_ant: Stre 97.1 0.0082 1.8E-07 60.6 12.8 88 234-332 174-271 (500)
387 PRK06475 salicylate hydroxylas 97.1 0.0072 1.6E-07 61.3 12.8 50 282-333 111-165 (400)
388 TIGR02485 CobZ_N-term precorri 97.1 0.0016 3.5E-08 66.7 7.8 30 63-92 1-30 (432)
389 KOG1298 Squalene monooxygenase 97.0 0.0023 5E-08 61.7 8.0 35 56-90 43-77 (509)
390 PRK11445 putative oxidoreducta 97.0 0.012 2.5E-07 58.6 13.5 45 289-333 109-155 (351)
391 TIGR01988 Ubi-OHases Ubiquinon 97.0 0.0088 1.9E-07 60.1 12.8 49 282-333 110-161 (385)
392 PRK07045 putative monooxygenas 97.0 0.0074 1.6E-07 60.9 12.2 58 280-341 108-169 (388)
393 PRK10015 oxidoreductase; Provi 97.0 0.0079 1.7E-07 61.5 12.4 51 280-333 110-162 (429)
394 PRK07588 hypothetical protein; 97.0 0.0066 1.4E-07 61.3 11.7 40 291-333 115-156 (391)
395 PRK08641 sdhA succinate dehydr 97.0 0.0006 1.3E-08 72.5 4.3 37 58-94 3-39 (589)
396 COG0562 Glf UDP-galactopyranos 97.0 0.00061 1.3E-08 64.2 3.7 39 58-96 1-39 (374)
397 PTZ00363 rab-GDP dissociation 97.0 0.00077 1.7E-08 68.7 4.9 40 57-96 3-42 (443)
398 PRK12837 3-ketosteroid-delta-1 97.0 0.00056 1.2E-08 71.6 3.9 39 58-97 7-45 (513)
399 TIGR01790 carotene-cycl lycope 97.0 0.0075 1.6E-07 60.8 11.9 93 225-334 1-140 (388)
400 PRK12845 3-ketosteroid-delta-1 97.0 0.00082 1.8E-08 70.9 5.0 45 55-100 13-57 (564)
401 PRK06567 putative bifunctional 97.0 0.0015 3.3E-08 71.4 6.9 35 221-269 381-415 (1028)
402 PRK08020 ubiF 2-octaprenyl-3-m 97.0 0.0079 1.7E-07 60.7 11.9 50 281-333 115-167 (391)
403 PRK09897 hypothetical protein; 97.0 0.01 2.2E-07 62.0 12.7 43 289-333 118-164 (534)
404 PLN03000 amine oxidase 96.9 0.00074 1.6E-08 73.2 4.3 42 56-97 182-223 (881)
405 PRK08850 2-octaprenyl-6-methox 96.9 0.011 2.3E-07 60.1 12.4 46 285-333 118-166 (405)
406 PF00732 GMC_oxred_N: GMC oxid 96.9 0.00082 1.8E-08 65.1 4.0 66 280-348 195-268 (296)
407 KOG1399 Flavin-containing mono 96.9 0.007 1.5E-07 61.5 10.4 104 223-340 6-158 (448)
408 PF12831 FAD_oxidored: FAD dep 96.9 0.001 2.2E-08 68.0 4.5 92 226-332 2-147 (428)
409 PRK12834 putative FAD-binding 96.9 0.00086 1.9E-08 70.9 4.0 40 57-96 3-44 (549)
410 PRK08849 2-octaprenyl-3-methyl 96.9 0.013 2.7E-07 59.1 12.4 44 291-339 124-169 (384)
411 PRK12844 3-ketosteroid-delta-1 96.9 0.00092 2E-08 70.6 4.2 40 58-97 6-45 (557)
412 PRK12839 hypothetical protein; 96.9 0.0011 2.5E-08 70.1 4.8 42 56-97 6-47 (572)
413 PRK06481 fumarate reductase fl 96.9 0.019 4.2E-07 60.0 13.9 53 280-332 192-248 (506)
414 PRK12835 3-ketosteroid-delta-1 96.8 0.0012 2.5E-08 70.2 4.8 40 57-96 10-49 (584)
415 KOG1276 Protoporphyrinogen oxi 96.8 0.0011 2.4E-08 64.8 4.1 41 56-96 9-51 (491)
416 PLN02976 amine oxidase 96.8 0.0014 2.9E-08 74.0 4.9 42 55-96 690-731 (1713)
417 PRK07395 L-aspartate oxidase; 96.8 0.0016 3.5E-08 68.6 5.2 38 57-95 8-45 (553)
418 PRK06617 2-octaprenyl-6-methox 96.8 0.014 3.1E-07 58.5 11.7 53 281-339 107-162 (374)
419 TIGR02028 ChlP geranylgeranyl 96.8 0.016 3.5E-07 58.6 12.1 22 225-246 2-23 (398)
420 TIGR02023 BchP-ChlP geranylger 96.7 0.016 3.5E-07 58.5 12.0 94 225-333 2-153 (388)
421 PRK07494 2-octaprenyl-6-methox 96.7 0.017 3.6E-07 58.3 12.0 48 282-333 115-165 (388)
422 TIGR02360 pbenz_hydroxyl 4-hyd 96.7 0.015 3.3E-07 58.7 11.6 51 283-333 108-161 (390)
423 PRK11728 hydroxyglutarate oxid 96.7 0.026 5.6E-07 57.1 13.3 57 284-348 155-213 (393)
424 PRK12266 glpD glycerol-3-phosp 96.7 0.027 5.8E-07 58.9 13.6 49 285-333 162-214 (508)
425 PRK08274 tricarballylate dehyd 96.7 0.032 6.9E-07 57.8 13.8 52 282-333 135-190 (466)
426 PRK07538 hypothetical protein; 96.7 0.018 4E-07 58.5 11.9 50 284-333 108-163 (413)
427 TIGR01813 flavo_cyto_c flavocy 96.6 0.033 7.2E-07 57.2 13.6 53 280-333 132-190 (439)
428 PTZ00306 NADH-dependent fumara 96.6 0.0021 4.6E-08 73.6 5.2 41 56-96 407-447 (1167)
429 COG1251 NirB NAD(P)H-nitrite r 96.6 0.0094 2E-07 62.5 9.0 129 224-377 4-144 (793)
430 PRK06996 hypothetical protein; 96.6 0.019 4.2E-07 58.1 11.4 54 278-332 115-171 (398)
431 PRK06185 hypothetical protein; 96.6 0.027 5.9E-07 57.1 12.3 52 281-333 111-167 (407)
432 TIGR03219 salicylate_mono sali 96.6 0.027 5.8E-07 57.4 12.2 39 292-333 117-157 (414)
433 KOG1346 Programmed cell death 96.6 0.0033 7.2E-08 61.1 5.1 100 58-178 347-452 (659)
434 TIGR00136 gidA glucose-inhibit 96.6 0.024 5.2E-07 59.5 11.8 93 225-334 2-153 (617)
435 PRK12843 putative FAD-binding 96.5 0.0033 7.2E-08 66.8 5.4 42 57-98 15-56 (578)
436 TIGR02061 aprA adenosine phosp 96.5 0.0021 4.5E-08 68.3 3.6 33 60-92 1-37 (614)
437 PRK05732 2-octaprenyl-6-methox 96.4 0.044 9.6E-07 55.3 12.9 48 283-333 117-167 (395)
438 PF05834 Lycopene_cycl: Lycope 96.4 0.023 5E-07 57.0 10.5 93 226-333 2-140 (374)
439 PF13434 K_oxygenase: L-lysine 96.4 0.0054 1.2E-07 60.5 5.7 37 56-92 188-226 (341)
440 PLN00093 geranylgeranyl diphos 96.4 0.03 6.5E-07 57.5 11.3 21 225-245 41-61 (450)
441 PRK08294 phenol 2-monooxygenas 96.3 0.047 1E-06 58.7 12.5 58 280-339 143-212 (634)
442 PRK09077 L-aspartate oxidase; 96.3 0.0036 7.8E-08 65.9 4.0 38 57-95 7-44 (536)
443 PRK02106 choline dehydrogenase 96.2 0.0042 9E-08 65.9 4.3 36 57-92 4-40 (560)
444 TIGR03862 flavo_PP4765 unchara 96.2 0.071 1.5E-06 53.0 12.5 123 221-348 12-160 (376)
445 KOG4716 Thioredoxin reductase 96.2 0.0039 8.5E-08 59.1 3.3 105 56-177 196-302 (503)
446 PLN02985 squalene monooxygenas 96.2 0.07 1.5E-06 55.8 12.9 23 224-246 44-66 (514)
447 PRK07121 hypothetical protein; 96.2 0.091 2E-06 54.8 13.8 54 280-333 179-237 (492)
448 PRK14106 murD UDP-N-acetylmura 96.1 0.0074 1.6E-07 62.2 5.3 35 57-91 4-38 (450)
449 PF04820 Trp_halogenase: Trypt 96.1 0.083 1.8E-06 54.4 12.6 49 282-333 158-209 (454)
450 PRK13800 putative oxidoreducta 96.0 0.0055 1.2E-07 68.5 4.0 36 57-92 12-47 (897)
451 COG1053 SdhA Succinate dehydro 96.0 0.0058 1.2E-07 64.1 3.7 38 57-94 5-42 (562)
452 TIGR01470 cysG_Nterm siroheme 96.0 0.02 4.4E-07 52.0 6.7 34 222-269 8-41 (205)
453 KOG2960 Protein involved in th 95.9 0.0029 6.2E-08 56.0 0.9 37 59-95 77-115 (328)
454 PRK08275 putative oxidoreducta 95.9 0.12 2.5E-06 54.9 13.2 53 281-333 140-198 (554)
455 PF13450 NAD_binding_8: NAD(P) 95.9 0.016 3.4E-07 42.4 4.6 32 228-273 1-32 (68)
456 TIGR01812 sdhA_frdA_Gneg succi 95.8 0.1 2.2E-06 55.5 12.5 49 284-332 135-188 (566)
457 COG2303 BetA Choline dehydroge 95.7 0.011 2.5E-07 62.1 4.7 36 56-91 5-40 (542)
458 PF13241 NAD_binding_7: Putati 95.7 0.012 2.5E-07 47.1 3.7 34 57-90 6-39 (103)
459 KOG0405 Pyridine nucleotide-di 95.7 0.016 3.5E-07 55.4 5.0 103 55-179 186-291 (478)
460 KOG0404 Thioredoxin reductase 95.6 0.062 1.3E-06 48.3 8.0 103 225-333 10-122 (322)
461 KOG1800 Ferredoxin/adrenodoxin 95.6 0.034 7.4E-07 53.9 6.8 87 225-333 22-118 (468)
462 PF13454 NAD_binding_9: FAD-NA 95.5 0.15 3.2E-06 44.1 10.2 34 227-269 1-34 (156)
463 TIGR01810 betA choline dehydro 95.5 0.013 2.7E-07 61.9 4.0 33 60-92 1-34 (532)
464 PRK14106 murD UDP-N-acetylmura 95.5 0.073 1.6E-06 54.9 9.4 79 222-339 4-82 (450)
465 KOG4254 Phytoene desaturase [C 95.5 0.01 2.3E-07 58.6 2.9 50 56-105 12-61 (561)
466 PRK05945 sdhA succinate dehydr 95.4 0.16 3.4E-06 54.1 12.1 51 283-333 140-195 (575)
467 COG3634 AhpF Alkyl hydroperoxi 95.3 0.048 1E-06 52.2 6.8 96 223-334 211-324 (520)
468 PRK05335 tRNA (uracil-5-)-meth 95.3 0.022 4.7E-07 57.3 4.7 34 225-272 4-37 (436)
469 COG3573 Predicted oxidoreducta 95.3 0.018 3.9E-07 54.7 3.8 35 58-92 5-39 (552)
470 COG0445 GidA Flavin-dependent 95.3 0.046 9.9E-07 55.7 6.9 47 283-332 105-155 (621)
471 PRK07573 sdhA succinate dehydr 95.2 0.21 4.5E-06 53.8 12.3 46 287-332 179-229 (640)
472 PRK06718 precorrin-2 dehydroge 95.2 0.096 2.1E-06 47.5 8.3 33 222-268 9-41 (202)
473 PRK06175 L-aspartate oxidase; 95.1 0.22 4.8E-06 51.0 11.5 55 279-333 129-187 (433)
474 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.017 3.6E-07 50.2 2.7 32 60-91 1-32 (157)
475 COG3380 Predicted NAD/FAD-depe 95.0 0.093 2E-06 48.7 7.5 34 225-272 3-36 (331)
476 PLN02785 Protein HOTHEAD 95.0 0.025 5.5E-07 60.0 4.5 36 56-92 53-88 (587)
477 PRK06263 sdhA succinate dehydr 95.0 0.24 5.3E-06 52.3 11.8 52 282-333 138-195 (543)
478 PF01494 FAD_binding_3: FAD bi 95.0 0.026 5.6E-07 55.7 4.3 35 225-273 3-37 (356)
479 TIGR01470 cysG_Nterm siroheme 95.0 0.026 5.6E-07 51.3 3.9 34 57-90 8-41 (205)
480 PRK06719 precorrin-2 dehydroge 94.9 0.031 6.7E-07 48.4 4.1 34 57-90 12-45 (157)
481 PRK06452 sdhA succinate dehydr 94.9 0.27 5.9E-06 52.2 11.9 50 283-332 141-195 (566)
482 TIGR02352 thiamin_ThiO glycine 94.9 0.27 5.8E-06 48.3 11.2 80 249-333 110-191 (337)
483 PRK08255 salicylyl-CoA 5-hydro 94.8 0.099 2.1E-06 57.6 8.6 35 225-271 2-36 (765)
484 TIGR00551 nadB L-aspartate oxi 94.8 0.35 7.5E-06 50.4 12.2 55 279-333 129-187 (488)
485 KOG0029 Amine oxidase [Seconda 94.7 0.038 8.2E-07 57.2 4.7 38 222-273 14-51 (501)
486 COG1206 Gid NAD(FAD)-utilizing 94.7 0.089 1.9E-06 50.1 6.6 91 225-332 5-137 (439)
487 PF01488 Shikimate_DH: Shikima 94.7 0.093 2E-06 44.2 6.3 84 222-342 11-94 (135)
488 PF02558 ApbA: Ketopantoate re 94.7 0.13 2.7E-06 44.2 7.3 87 226-346 1-87 (151)
489 COG4529 Uncharacterized protei 94.6 0.47 1E-05 47.9 11.9 37 225-272 3-39 (474)
490 PRK08401 L-aspartate oxidase; 94.5 0.38 8.1E-06 49.8 11.6 21 225-245 3-23 (466)
491 PRK07804 L-aspartate oxidase; 94.5 0.43 9.3E-06 50.4 12.1 54 280-333 146-208 (541)
492 PRK06718 precorrin-2 dehydroge 94.3 0.048 1E-06 49.5 3.9 34 57-90 9-42 (202)
493 KOG2755 Oxidoreductase [Genera 94.3 0.11 2.3E-06 48.0 6.0 94 225-338 1-105 (334)
494 PRK07803 sdhA succinate dehydr 94.3 0.4 8.6E-06 51.6 11.5 40 293-332 166-210 (626)
495 TIGR01811 sdhA_Bsu succinate d 94.3 0.44 9.5E-06 51.0 11.7 43 291-333 146-194 (603)
496 PRK02705 murD UDP-N-acetylmura 94.2 0.039 8.5E-07 57.0 3.5 33 60-92 2-34 (459)
497 PRK05329 anaerobic glycerol-3- 94.1 0.11 2.4E-06 52.7 6.5 95 62-175 219-318 (422)
498 KOG3851 Sulfide:quinone oxidor 94.1 0.029 6.3E-07 53.1 2.1 95 223-333 39-143 (446)
499 PF13241 NAD_binding_7: Putati 94.1 0.048 1E-06 43.6 3.1 35 222-270 6-40 (103)
500 COG1206 Gid NAD(FAD)-utilizing 94.1 0.033 7.1E-07 52.9 2.4 35 58-92 3-37 (439)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=2.1e-61 Score=455.36 Aligned_cols=370 Identities=60% Similarity=0.990 Sum_probs=338.4
Q ss_pred CcchhhhhhhhhhcccCCCCchhhhhhhhcccceeEeeccccCCCCCCCCCCCCCCCCCeEEEECCcHHHHHHHHhcCCC
Q 011476 1 MRGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNP 80 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~L~~~ 80 (485)
|....++.|.++..+..++.++++..+.+++++...|...++... .+..+....+++|||+|+||+|.+++..|...
T Consensus 1 m~~~~~~~r~s~~~~~~~s~~k~l~~st~~g~~~~~y~~an~~~~---~~~~~~~~kKk~vVVLGsGW~a~S~lk~ldts 77 (491)
T KOG2495|consen 1 MLFLSSLARISRTTSSSKSTLKILLASTLSGGGLVAYSEANPSEK---VPGPKNGGKKKRVVVLGSGWGAISLLKKLDTS 77 (491)
T ss_pred CchhhhHHhhccccccCcchhhhhhhheeccceeEEEecCCcccc---CCCCCCCCCCceEEEEcCchHHHHHHHhcccc
Confidence 556677888888888888888999999999999989986664443 22234556789999999999999999999999
Q ss_pred CCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceE
Q 011476 81 SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEF 160 (485)
Q Consensus 81 g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~ 160 (485)
-|+|+||+++++|.|+|++|...+|+++.+++.++.+.+.++...+++|+++++..||++.+.|+++.-..+.. ..++
T Consensus 78 ~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~--~~e~ 155 (491)
T KOG2495|consen 78 LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSS--DKEF 155 (491)
T ss_pred ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCC--ccee
Confidence 99999999999999999999999999999999999999999887678899999999999999999987542211 3467
Q ss_pred EeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHH
Q 011476 161 CMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAA 240 (485)
Q Consensus 161 ~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~ 240 (485)
.+.||+||+|+|+.++++++||..+++++++.++|+.+++..+.++++.+.+|.++++||++..++|||||||+|+|+|.
T Consensus 156 ~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAa 235 (491)
T KOG2495|consen 156 VIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAA 235 (491)
T ss_pred eecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCcEEEEEcCCCeEE
Q 011476 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETS 320 (485)
Q Consensus 241 ~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~ 320 (485)
+|+++..+++.+.||+++...+||+++..+++|++|+..+.++.++.+.+.||++.+++.|+.+++..+.... .+|+..
T Consensus 236 EL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~-~~g~~~ 314 (491)
T KOG2495|consen 236 ELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKT-KDGEIE 314 (491)
T ss_pred HHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEc-CCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888877 488888
Q ss_pred EEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEEeccccC
Q 011476 321 SMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCAT 376 (485)
Q Consensus 321 ~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya~GD~~~ 376 (485)
+||+.+++|++|++.+|.+..|.++++...++++.||++||..+.+||||+|||+.
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~ 370 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCAD 370 (491)
T ss_pred eecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccc
Confidence 99999999999999999999998888775577999999999999999999999994
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-48 Score=378.20 Aligned_cols=300 Identities=38% Similarity=0.637 Sum_probs=265.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
.+++|||||||++|+.+|..|.+. +.+|||||+++++.|+|+++.+..|.++..++..+++.++++.+ +++|.+++|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~-~v~~~~~~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG-NVQFVQGEV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC-ceEEEEEEE
Confidence 468999999999999999999975 48999999999999999999999999999999999999999766 466899999
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (485)
++||++.++|.+.++. .+.||+||+|+|+.++.+++||+.++++++++++|+.++++++..+|+.+..+.
T Consensus 81 ~~ID~~~k~V~~~~~~----------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~ 150 (405)
T COG1252 81 TDIDRDAKKVTLADLG----------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE 150 (405)
T ss_pred EEEcccCCEEEeCCCc----------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998743 899999999999999999999999999999999999999999999998887543
Q ss_pred CCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcE
Q 011476 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294 (485)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 294 (485)
.+ +....++|||||++|+|+|.+|.++..+.+.+..+... ..+|+|+++.+++||.++++++.+.++.|++.||+
T Consensus 151 ~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~-~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 151 DD----RALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPS-ELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE 225 (405)
T ss_pred cc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCcc-ccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence 22 23458999999999999999999998776666333333 68999999999999999999999999999999999
Q ss_pred EEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeEEec
Q 011476 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALG 372 (485)
Q Consensus 295 v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~G 372 (485)
+++++.|++++++.+++.. |+. +|++|++|||+|+..+|.++.| .|. +.+|.+.||++||+.++|+|||+|
T Consensus 226 v~l~~~Vt~v~~~~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l---~~~e~dr~Grl~V~~~L~~~~~~~IFa~G 298 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKD---GEE-EIPADTVVWAAGVRASPLLKDL---SGLETDRRGRLVVNPTLQVPGHPDIFAAG 298 (405)
T ss_pred EEcCCceEEECCCcEEEcc---CCe-eEecCEEEEcCCCcCChhhhhc---ChhhhccCCCEEeCCCcccCCCCCeEEEe
Confidence 9999999999999988865 432 4999999999998666655443 244 567999999999999999999999
Q ss_pred cccCCCC
Q 011476 373 DCATVNQ 379 (485)
Q Consensus 373 D~~~~~~ 379 (485)
||+....
T Consensus 299 D~A~~~~ 305 (405)
T COG1252 299 DCAAVID 305 (405)
T ss_pred ccccCCC
Confidence 9998765
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=364.32 Aligned_cols=311 Identities=47% Similarity=0.800 Sum_probs=264.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
..+++|||||||+||+++|..|...+++|+|||+++++.|+|+++.+..+..+.+++..+++..++.+++ +++.++|+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~--~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPN--RYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCe--EEEEEEEE
Confidence 4567999999999999999999877899999999999999999999999988888888888888888874 47899999
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (485)
.||++++.|.+...........+...+.||+||||||+.++.+++||.+++++.+++++++.++++.+.++++....++.
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 165 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTT 165 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999988321100000001127999999999999999999999988888999999999999999888887777666
Q ss_pred CHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEE
Q 011476 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDV 295 (485)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v 295 (485)
+.+++++.++++|||||++|+|+|..|.++..+...+.+|.++++.+|+++++++++++.+++++.+.+++.|++.||++
T Consensus 166 ~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v 245 (424)
T PTZ00318 166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDI 245 (424)
T ss_pred ChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEE
Confidence 65555566799999999999999999999877766777887778899999999999999999999999999999999999
Q ss_pred EcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeEEecc
Q 011476 296 KLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGD 373 (485)
Q Consensus 296 ~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD 373 (485)
+++++|+++.++.+.+ ++|++ +++|++||++|+ .|+ .+++.+++ +.+|+|.||++||+++.|||||+||
T Consensus 246 ~~~~~v~~v~~~~v~~---~~g~~--i~~d~vi~~~G~--~~~--~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD 316 (424)
T PTZ00318 246 RTKTAVKEVLDKEVVL---KDGEV--IPTGLVVWSTGV--GPG--PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGD 316 (424)
T ss_pred EeCCeEEEEeCCEEEE---CCCCE--EEccEEEEccCC--CCc--chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEec
Confidence 9999999998876553 46765 999999999995 454 35566666 5679999999999769999999999
Q ss_pred ccCC
Q 011476 374 CATV 377 (485)
Q Consensus 374 ~~~~ 377 (485)
|+..
T Consensus 317 ~a~~ 320 (424)
T PTZ00318 317 CAAN 320 (424)
T ss_pred cccC
Confidence 9985
No 4
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.3e-38 Score=324.76 Aligned_cols=273 Identities=20% Similarity=0.327 Sum_probs=222.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcccCC-CccccccCccccc-ccccc-hHHHHhhCCCeEEEEEe
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP-LLPSVTCGTVEAR-SIVEP-VRNIVRKKNVDICFWEA 132 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~gv~v~~~~~ 132 (485)
+++|||||||+||++||..|++. +++|+|||+++++.|.+ .++.+..+..... +.... ...+.++.++++ +.++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~~ 79 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITV-KTYH 79 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEE-EeCC
Confidence 35899999999999999999844 78999999999998874 6677665544332 22222 344556678876 3578
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
+|+.||++++.|.+.++. +++..++.||+||||||++|+.|++++ ++++.++++.++..+++.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------- 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRK-----TNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------- 145 (438)
T ss_pred EEEEEECCCCEEEEEECC-----CCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-------
Confidence 899999999999988653 223346899999999999998877654 567778888888777766532
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~g 292 (485)
..+++++|||||++|+|+|..|.++ |.+||++++.+++++.+++++...+.+.|++.|
T Consensus 146 --------~~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~g 203 (438)
T PRK13512 146 --------NQVDKALVVGAGYISLEVLENLYER--------------GLHPTLIHRSDKINKLMDADMNQPILDELDKRE 203 (438)
T ss_pred --------cCCCEEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecccccchhcCHHHHHHHHHHHHhcC
Confidence 1346999999999999999999986 689999999999999999999999999999999
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeEE
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYA 370 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya 370 (485)
|+++++++|+++++..+.+ .+|+. ++||.|+||+| ..|++ ++++..|+ +.+|+|.||+++|| +.|||||
T Consensus 204 I~i~~~~~v~~i~~~~v~~---~~g~~--~~~D~vl~a~G--~~pn~-~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA 274 (438)
T PRK13512 204 IPYRLNEEIDAINGNEVTF---KSGKV--EHYDMIIEGVG--THPNS-KFIESSNIKLDDKGFIPVNDKFET-NVPNIYA 274 (438)
T ss_pred CEEEECCeEEEEeCCEEEE---CCCCE--EEeCEEEECcC--CCcCh-HHHHhcCcccCCCCcEEECCCccc-CCCCEEE
Confidence 9999999999998755443 35654 89999999999 78988 56788877 56789999999998 8999999
Q ss_pred eccccC
Q 011476 371 LGDCAT 376 (485)
Q Consensus 371 ~GD~~~ 376 (485)
+|||+.
T Consensus 275 ~GD~~~ 280 (438)
T PRK13512 275 IGDIIT 280 (438)
T ss_pred eeeeEE
Confidence 999986
No 5
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=316.94 Aligned_cols=270 Identities=21% Similarity=0.328 Sum_probs=217.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCC--cEEEEcCCCCcccC-C-CccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSY--DVQVISPRNYFAFT-P-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
+++|||||||+||++||..|++.++ +|+||++++++.|. | +...+..+.... .......+++.+.++++ +....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~-~~g~~ 80 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQ-LQQVLPANWWQENNVHL-HSGVT 80 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcc-ccccCCHHHHHHCCCEE-EcCCE
Confidence 4689999999999999999997776 79999999887774 3 333333332211 11112245566778775 24567
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
|..+|++.+.+.+.++. .+.||+||||||+.|+.+++++.. ++++.+++..++..++..+
T Consensus 81 V~~id~~~~~v~~~~g~----------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~--------- 141 (396)
T PRK09754 81 IKTLGRDTRELVLTNGE----------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL--------- 141 (396)
T ss_pred EEEEECCCCEEEECCCC----------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh---------
Confidence 99999999988887654 899999999999999888777654 6788888899988887654
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-ccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~ 291 (485)
..+++++|||||++|+|+|..|.++ |.+||++++.+.+++. +++.+.+.+.+.+++.
T Consensus 142 --------~~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 199 (396)
T PRK09754 142 --------QPERSVVIVGAGTIGLELAASATQR--------------RCKVTVIELAATVMGRNAPPPVQRYLLQRHQQA 199 (396)
T ss_pred --------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCcchhhhcCHHHHHHHHHHHHHC
Confidence 2456999999999999999999986 6899999999998874 6888889999999999
Q ss_pred CcEEEcCceEEEEeCCc-EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEE
Q 011476 292 GIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya 370 (485)
||++++++.+++++.+. +.+. +.+|+. ++||.||+++| ..|++ .|++.+|+..+++|.||+++|| +.|||||
T Consensus 200 GV~i~~~~~V~~i~~~~~~~v~-l~~g~~--i~aD~Vv~a~G--~~pn~-~l~~~~gl~~~~gi~vd~~~~t-s~~~IyA 272 (396)
T PRK09754 200 GVRILLNNAIEHVVDGEKVELT-LQSGET--LQADVVIYGIG--ISAND-QLAREANLDTANGIVIDEACRT-CDPAIFA 272 (396)
T ss_pred CCEEEeCCeeEEEEcCCEEEEE-ECCCCE--EECCEEEECCC--CChhh-HHHHhcCCCcCCCEEECCCCcc-CCCCEEE
Confidence 99999999999997643 4433 356765 99999999999 68887 6788888865678999999998 9999999
Q ss_pred eccccCC
Q 011476 371 LGDCATV 377 (485)
Q Consensus 371 ~GD~~~~ 377 (485)
+|||+..
T Consensus 273 ~GD~a~~ 279 (396)
T PRK09754 273 GGDVAIT 279 (396)
T ss_pred ccceEee
Confidence 9999964
No 6
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.1e-37 Score=311.68 Aligned_cols=279 Identities=24% Similarity=0.420 Sum_probs=230.4
Q ss_pred eEEEECCcHHHHHHHHhcC---CCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 60 KVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~---~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
+|||||||+||+.+|.+|+ ..+++|+|||+++++.|.+.++.+..+....+++..++++++++++++ +..++|..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~--~~~~~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGAR--FVIAEATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCE--EEEEEEEE
Confidence 5899999999999999996 357899999999999998888888777777778888888999888866 67789999
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (485)
||++++.|.+.++. ++.||+||||||+.++.|++||..++++.+++.+++......+..+++. +
T Consensus 79 id~~~~~V~~~~g~----------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 142 (364)
T TIGR03169 79 IDPDRRKVLLANRP----------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADA---P--- 142 (364)
T ss_pred EecccCEEEECCCC----------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhc---C---
Confidence 99999999987764 7999999999999999999999778888889999888866665443321 0
Q ss_pred HHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEE
Q 011476 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (485)
Q Consensus 217 ~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 296 (485)
..+++++|||||++|+|+|..|.++..+ .....+|+++ ..+.+++.+++.+...+++.+++.||+++
T Consensus 143 ----~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 209 (364)
T TIGR03169 143 ----PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVH 209 (364)
T ss_pred ----CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 1346999999999999999999876421 1112589999 66778888888999999999999999999
Q ss_pred cCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeEEeccc
Q 011476 297 LGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDC 374 (485)
Q Consensus 297 ~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~ 374 (485)
+++.+++++++.+.+ .+|++ +++|.||+|+| ..|+. ++...++ +.+|+|.||+++|+++.|+|||+|||
T Consensus 210 ~~~~v~~i~~~~v~~---~~g~~--i~~D~vi~a~G--~~p~~--~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~ 280 (364)
T TIGR03169 210 EGAPVTRGPDGALIL---ADGRT--LPADAILWATG--ARAPP--WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280 (364)
T ss_pred eCCeeEEEcCCeEEe---CCCCE--EecCEEEEccC--CChhh--HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeee
Confidence 999999998764433 35665 99999999999 46654 3445565 56799999999998789999999999
Q ss_pred cCCC
Q 011476 375 ATVN 378 (485)
Q Consensus 375 ~~~~ 378 (485)
+..+
T Consensus 281 ~~~~ 284 (364)
T TIGR03169 281 AVIT 284 (364)
T ss_pred eecC
Confidence 9753
No 7
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=6.2e-38 Score=338.06 Aligned_cols=273 Identities=21% Similarity=0.367 Sum_probs=228.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCC----CCCcEEEEcCCCCcccCC-CccccccCcccccccccchHHHHhhCCCeEEEEEe
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~----~g~~V~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~ 132 (485)
+++|||||+|+||+++|..|++ .+++|+||++++++.|.+ .++.+..+. ..+++.....+++++.++++ +...
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~gI~~-~~g~ 80 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGIKV-LVGE 80 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCCCEE-EcCC
Confidence 4589999999999999999863 468999999999988864 455554443 34456666678888899886 3456
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcC
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (485)
.|+.||++.+.|.+.++. .+.||+||||||++|+.|++||.+ .+++.+++++++.+++..+
T Consensus 81 ~V~~Id~~~~~V~~~~G~----------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~-------- 142 (847)
T PRK14989 81 RAITINRQEKVIHSSAGR----------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA-------- 142 (847)
T ss_pred EEEEEeCCCcEEEECCCc----------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH--------
Confidence 799999998888876654 899999999999999999999986 5678888999988887654
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-cccHHHHHHHHHHHHh
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSR 290 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~ 290 (485)
..+++++|||||++|+|+|..|.++ |.+|+++++.+++++ .++++....+.+.|++
T Consensus 143 ---------~~~k~vvVIGgG~iGlE~A~~L~~~--------------G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~ 199 (847)
T PRK14989 143 ---------RRSKRGAVVGGGLLGLEAAGALKNL--------------GVETHVIEFAPMLMAEQLDQMGGEQLRRKIES 199 (847)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEeccccchhhhcCHHHHHHHHHHHHH
Confidence 2456999999999999999999987 689999999999887 5899999999999999
Q ss_pred CCcEEEcCceEEEEeCC---cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCC
Q 011476 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGS 365 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~ 365 (485)
.||++++++.++++.++ ....+...+|++ +++|.||+|+| ..|++ .|++.+|+ +.+|+|.||+++|| +.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~--i~~D~Vv~A~G--~rPn~-~L~~~~Gl~~~~~G~I~VD~~l~T-s~ 273 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSE--LEVDFIVFSTG--IRPQD-KLATQCGLAVAPRGGIVINDSCQT-SD 273 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCE--EEcCEEEECCC--cccCc-hHHhhcCccCCCCCcEEECCCCcC-CC
Confidence 99999999999999642 233333457775 99999999999 68888 58888887 56789999999998 99
Q ss_pred CCeEEeccccCCCC
Q 011476 366 DSIYALGDCATVNQ 379 (485)
Q Consensus 366 ~~Vya~GD~~~~~~ 379 (485)
|+|||+|||+....
T Consensus 274 p~IYAiGD~a~~~~ 287 (847)
T PRK14989 274 PDIYAIGECASWNN 287 (847)
T ss_pred CCEEEeecceeEcC
Confidence 99999999998744
No 8
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-37 Score=310.44 Aligned_cols=271 Identities=23% Similarity=0.382 Sum_probs=220.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCC--CCCcEEEEcCCCCccc-CCCccccccCccccccccc-chHHHHhhCCCeEEEEEeE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF-TPLLPSVTCGTVEARSIVE-PVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~--~g~~V~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~v~~~~~~ 133 (485)
+++|||||||+||+++|..|++ ...+|+||+++++..| .|.++.+..+...+.++.. ...++++++++++ +.+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~ 80 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRL-FPHTW 80 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEE-ECCCE
Confidence 4699999999999999999984 4678999999987666 4666666666555555554 3567778889876 35678
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
|..+|++.+.+.+. +. .+.||+||||||+.|+.|++||.+. ++.++++.++..+...+
T Consensus 81 V~~id~~~~~v~~~-~~----------~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~---------- 138 (377)
T PRK04965 81 VTDIDAEAQVVKSQ-GN----------QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL---------- 138 (377)
T ss_pred EEEEECCCCEEEEC-Ce----------EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh----------
Confidence 99999988877752 22 8999999999999999999999754 67777877776665543
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-ccHHHHHHHHHHHHhCC
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDG 292 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~~~g 292 (485)
..+++++|||||++|+|+|..|.+. +.+|+++++.+++++. +++.+...+++.+++.|
T Consensus 139 -------~~~~~vvViGgG~~g~e~A~~L~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 139 -------RDAQRVLVVGGGLIGTELAMDLCRA--------------GKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred -------hcCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 2456999999999999999999886 6899999999998875 58888999999999999
Q ss_pred cEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEE
Q 011476 293 IDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (485)
Q Consensus 293 V~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya 370 (485)
|++++++.+++++.+ .+.+. ..+|++ ++||.||+|+| ..|++ .+++.+|+..+++|.||+++|| +.|||||
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~-~~~g~~--i~~D~vI~a~G--~~p~~-~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA 270 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRAT-LDSGRS--IEVDAVIAAAG--LRPNT-ALARRAGLAVNRGIVVDSYLQT-SAPDIYA 270 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEE-EcCCcE--EECCEEEECcC--CCcch-HHHHHCCCCcCCCEEECCCccc-CCCCEEE
Confidence 999999999999754 33333 356765 99999999999 67887 6788888854456999999998 8999999
Q ss_pred eccccCCCC
Q 011476 371 LGDCATVNQ 379 (485)
Q Consensus 371 ~GD~~~~~~ 379 (485)
+|||+....
T Consensus 271 ~GD~a~~~~ 279 (377)
T PRK04965 271 LGDCAEING 279 (377)
T ss_pred eeecEeECC
Confidence 999997643
No 9
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.9e-37 Score=318.02 Aligned_cols=277 Identities=26% Similarity=0.415 Sum_probs=222.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcccCC-CccccccCccc-ccccccchHHHHhhCCCeEEEEEeEE
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP-LLPSVTCGTVE-ARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
++|||||||+||+++|..|++. +++|+|||++++++|.+ .++++..+... +.++.....+.+++.|+++ +.+++|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDV-KTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeE-EecCEE
Confidence 3799999999999999999865 46899999999988864 45555544322 3345555667788889876 357899
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
..|+++.+.+.+.+.. +++...+.||+||||||++|+.|++||.+ ++++.+++.+++.++++.+.+
T Consensus 80 ~~id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-------- 146 (444)
T PRK09564 80 VKVDAKNKTITVKNLK-----TGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD-------- 146 (444)
T ss_pred EEEECCCCEEEEEECC-----CCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------
Confidence 9999999999887521 11222344999999999999999999986 677778888888877766532
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-cccHHHHHHHHHHHHhCC
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~g 292 (485)
..+++++|||||++|+|+|..+.++ +.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus 147 -------~~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~g 205 (444)
T PRK09564 147 -------EEIKNIVIIGAGFIGLEAVEAAKHL--------------GKNVRIIQLEDRILPDSFDKEITDVMEEELRENG 205 (444)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHhc--------------CCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCC
Confidence 2346999999999999999999876 689999999998887 589999999999999999
Q ss_pred cEEEcCceEEEEeCCc-EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeE
Q 011476 293 IDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIY 369 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vy 369 (485)
|+++++++++++++++ +...... +.+ ++||.+++|+| ..|++ .++++.|+ +.+|+|.||+++|| +.||||
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~~-~~~--i~~d~vi~a~G--~~p~~-~~l~~~gl~~~~~g~i~vd~~~~t-~~~~Iy 278 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVTD-KGE--YEADVVIVATG--VKPNT-EFLEDTGLKTLKNGAIIVDEYGET-SIENIY 278 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEeC-CCE--EEcCEEEECcC--CCcCH-HHHHhcCccccCCCCEEECCCccc-CCCCEE
Confidence 9999999999997543 3333323 333 99999999999 68888 67888887 46789999999998 999999
Q ss_pred EeccccCC
Q 011476 370 ALGDCATV 377 (485)
Q Consensus 370 a~GD~~~~ 377 (485)
|+|||+..
T Consensus 279 A~GD~~~~ 286 (444)
T PRK09564 279 AAGDCATI 286 (444)
T ss_pred EeeeEEEE
Confidence 99999975
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2e-37 Score=334.81 Aligned_cols=271 Identities=19% Similarity=0.387 Sum_probs=230.7
Q ss_pred EEEECCcHHHHHHHHhcCC---CCCcEEEEcCCCCcccC-CCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 61 VVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 61 vvIIG~G~aGl~aA~~L~~---~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
|||||+|+||+++|..|+. .+++|+||++++++.|. +.++.+..+....+++.....+++++.++++ +...+|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~-~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITL-YTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEE-EcCCeEEE
Confidence 6999999999999988763 56899999999998886 4566777777666777777888899999886 35678999
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (485)
||+..+.|.+.++. .+.||+||||||+.|+.|++||.+ ++++.+++++++..+++.+
T Consensus 80 Id~~~k~V~~~~g~----------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~------------ 137 (785)
T TIGR02374 80 IDTDQKQVITDAGR----------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA------------ 137 (785)
T ss_pred EECCCCEEEECCCc----------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh------------
Confidence 99999999887654 899999999999999999999986 5788889999988877654
Q ss_pred CHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-cccHHHHHHHHHHHHhCCcE
Q 011476 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSRDGID 294 (485)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~ 294 (485)
..+++++|||||++|+|+|..|.++ |.+|+++++.+++++ .+++.....+.+.+++.||+
T Consensus 138 -----~~~k~vvVVGgG~~GlE~A~~L~~~--------------G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~ 198 (785)
T TIGR02374 138 -----QRFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLT 198 (785)
T ss_pred -----hcCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCE
Confidence 2456999999999999999999987 689999999999886 48999999999999999999
Q ss_pred EEcCceEEEEeCCc-EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEEecc
Q 011476 295 VKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGD 373 (485)
Q Consensus 295 v~~~~~v~~v~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya~GD 373 (485)
+++++.++++.++. +..+.+.+|+. +++|+||+++| ..|++ .|++.+|+..+|+|.||+++|| +.|+|||+||
T Consensus 199 v~~~~~v~~i~~~~~~~~v~~~dG~~--i~~D~Vi~a~G--~~Pn~-~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD 272 (785)
T TIGR02374 199 FLLEKDTVEIVGATKADRIRFKDGSS--LEADLIVMAAG--IRPND-ELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGE 272 (785)
T ss_pred EEeCCceEEEEcCCceEEEEECCCCE--EEcCEEEECCC--CCcCc-HHHHhcCCccCCCEEECCCccc-CCCCEEEeee
Confidence 99999999997543 33333467775 99999999999 68888 6888888865688999999998 9999999999
Q ss_pred ccCCCC
Q 011476 374 CATVNQ 379 (485)
Q Consensus 374 ~~~~~~ 379 (485)
|+..+.
T Consensus 273 ~a~~~~ 278 (785)
T TIGR02374 273 CAEHNG 278 (785)
T ss_pred cceeCC
Confidence 998644
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.6e-37 Score=310.66 Aligned_cols=281 Identities=23% Similarity=0.328 Sum_probs=214.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC---------------------------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------------TVEA 109 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~---------------------------~~~~ 109 (485)
..+|+||||+||||..+|..++..|.+|.++|+...+|++++..++.+. .++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4689999999999999999999999999999999888887533222111 0111
Q ss_pred ccc-----------ccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 110 RSI-----------VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 110 ~~~-----------~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
.++ ......++++++++ ++.+++..+++ ++|.+... +...+.++++|||||++|+.|
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G~a~f~~~--~~v~V~~~--------~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRGEARFVDP--HTVEVTGE--------DKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEEEEEECCC--CEEEEcCC--------CceEEEeCEEEEcCCCCCcCC
Confidence 111 11244556667866 67888888874 66776542 124899999999999999999
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 179 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
++||.+...+ +.+ .+ .+.. .++| ++++|||||++|+|+|..++++
T Consensus 151 ~~~~~~~~~~-~~s-~~----------~l~~---~~lP-------~~lvIiGgG~IGlE~a~~~~~L------------- 195 (454)
T COG1249 151 PGPGIDGARI-LDS-SD----------ALFL---LELP-------KSLVIVGGGYIGLEFASVFAAL------------- 195 (454)
T ss_pred CCCCCCCCeE-Eec-hh----------hccc---ccCC-------CEEEEECCCHHHHHHHHHHHHc-------------
Confidence 9999864321 111 11 1111 1223 4999999999999999999998
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (485)
|.+||++++.+++||.+|+++++.+.+.|++.|+++++++.+++++.+. +.+.. ++|+..++++|.|++|+| +.
T Consensus 196 -G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~-~~g~~~~~~ad~vLvAiG--R~ 271 (454)
T COG1249 196 -GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTL-EDGEGGTIEADAVLVAIG--RK 271 (454)
T ss_pred -CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEE-ecCCCCEEEeeEEEEccC--Cc
Confidence 7999999999999999999999999999999999999999999997532 44443 445433489999999999 89
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 337 p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
||++.| +++.|+ +.+|+|.||.+++| ++|||||+|||+..++ ....+..++.
T Consensus 272 Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~-Lah~A~~eg~ 326 (454)
T COG1249 272 PNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPM-LAHVAMAEGR 326 (454)
T ss_pred cCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcc-cHhHHHHHHH
Confidence 999878 899998 67899999966665 8999999999988876 3444444444
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=7.5e-36 Score=305.27 Aligned_cols=275 Identities=22% Similarity=0.311 Sum_probs=205.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc--------------------------ccc--
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEA-- 109 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~--------------------------~~~-- 109 (485)
.+||+||||||||++||..+++.|++|+|+|+. .+|+++......+.+ ++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999984 677765432211111 000
Q ss_pred ---------cccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCC
Q 011476 110 ---------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (485)
Q Consensus 110 ---------~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i 180 (485)
..+...++..+++.|++ ++.+++..++++ ++.+... + ..+.||+||||||++|+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g~~~~v~~~--~v~v~~~------g---~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVE--LLEGRARLVGPN--TVEVLQD------G---TTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEEecCC--EEEEecC------C---eEEEcCEEEEecCCcCCCCCC
Confidence 11223455667778866 567888888875 4444221 1 179999999999999999999
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCC
Q 011476 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (485)
Q Consensus 181 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g 260 (485)
||.+. .. +..++.. ++. .+++++|||||++|+|+|..+.++ +
T Consensus 148 ~G~~~-~~---~~~~~~~-------------l~~-------~~~~vvVIGgG~~g~E~A~~l~~~--------------G 189 (446)
T TIGR01424 148 PGHEL-GI---TSNEAFH-------------LPT-------LPKSILILGGGYIAVEFAGIWRGL--------------G 189 (446)
T ss_pred CCccc-ee---chHHhhc-------------ccc-------cCCeEEEECCcHHHHHHHHHHHHc--------------C
Confidence 99642 11 1111111 111 235999999999999999999886 6
Q ss_pred ceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcc
Q 011476 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (485)
Q Consensus 261 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (485)
.+|+++++.+.+++.+++++...+.+.|++.||++++++.+.+++. +++.+.. .+|+. +++|.|++|+| ..|+
T Consensus 190 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~viva~G--~~pn 264 (446)
T TIGR01424 190 VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTL-SHGEE--IVADVVLFATG--RSPN 264 (446)
T ss_pred CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE-cCCcE--eecCEEEEeeC--CCcC
Confidence 8999999999999999999999999999999999999999999974 3444443 45654 99999999999 7888
Q ss_pred hHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 339 IKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 339 ~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
+..+ ++.+|+ +.+|+|.||+++|| +.|||||+|||+.... ....+..++..
T Consensus 265 ~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~-l~~~A~~~g~~ 318 (446)
T TIGR01424 265 TKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRIN-LTPVAIMEATC 318 (446)
T ss_pred CCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCcc-chhHHHHHHHH
Confidence 8544 567776 56789999999998 9999999999997543 23444444443
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-35 Score=304.26 Aligned_cols=283 Identities=23% Similarity=0.365 Sum_probs=203.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc--------------------------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~--------------------------~~~~ 110 (485)
..+||+||||||||++||..|++.|++|+|||+.. +|+++......+.. .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999876 77754332221110 1111
Q ss_pred cccc-----------chHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 111 SIVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 111 ~~~~-----------~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++.+ .++..+++.|++ ++.+++..+++.. +.+.... ++ ..+.||+||||||++|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~~~~~--~~v~~~~-----~~--~~~~~d~lViAtGs~p~~~- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRGEAKLVDPNT--VRVMTED-----GE--QTYTAKNIILATGSRPREL- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccCCE--EEEecCC-----Cc--EEEEeCEEEEeCCCCCCCC-
Confidence 1121 244556677866 5677888887643 4443211 11 3799999999999999754
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCC
Q 011476 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (485)
Q Consensus 180 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~ 259 (485)
||.+.....+.+..++..+. ..+++++|||||++|+|+|..+.++
T Consensus 150 -pg~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~A~~l~~~-------------- 194 (462)
T PRK06416 150 -PGIEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEFASAYASL-------------- 194 (462)
T ss_pred -CCCCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 55532111222333322111 1235999999999999999999886
Q ss_pred CceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCc
Q 011476 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p 337 (485)
|.+||++++.+++++.+++++.+.+.+.|++.||+++++++|++++.+ .+.+....+|+..+++||.||+|+| ..|
T Consensus 195 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G--~~p 272 (462)
T PRK06416 195 GAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG--RRP 272 (462)
T ss_pred CCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC--Ccc
Confidence 689999999999999999999999999999999999999999999753 4544432234444699999999999 688
Q ss_pred chHHH-HHHhCC-CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 338 IIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 338 ~~~~l-~~~~g~-~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
++..+ ++..|+ ..+|+|.||+++|| +.|+|||+|||+..+. ....+..++..
T Consensus 273 ~~~~l~l~~~gl~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~-~~~~A~~~g~~ 326 (462)
T PRK06416 273 NTENLGLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDIVGGPM-LAHKASAEGII 326 (462)
T ss_pred CCCCCCchhcCCeecCCEEeECCCCcc-CCCCEEEeeecCCCcc-hHHHHHHHHHH
Confidence 88444 467777 23789999999997 9999999999997543 24444444443
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.8e-35 Score=301.83 Aligned_cols=270 Identities=20% Similarity=0.277 Sum_probs=204.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcC---------CCCcccCCCccccccC---------------------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP---------RNYFAFTPLLPSVTCG--------------------- 105 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~---------~~~~~~~~~~~~~~~~--------------------- 105 (485)
...+||+||||||||++||..++..|.+|+|||+ ...+|++++..+..+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3468999999999999999999999999999996 3557776543221110
Q ss_pred ------ccccccccc-----------chHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEE
Q 011476 106 ------TVEARSIVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLV 168 (485)
Q Consensus 106 ------~~~~~~~~~-----------~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lv 168 (485)
.++...+.+ .++.++.+.+++ ++.+++..+++....|.+.++. ...+.||+||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i~g~a~~vd~~~v~V~~~~g~--------~~~~~~d~LI 172 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LYEGEGKIVGPNEVEVTQLDGT--------KLRYTAKHIL 172 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEEecCCEEEEEeCCCc--------EEEEEcCEEE
Confidence 011111111 123445556755 7888999998865555544332 3368999999
Q ss_pred EccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHH
Q 011476 169 IAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE 248 (485)
Q Consensus 169 iAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~ 248 (485)
||||++|+.|++||.+. . .+.+++..+. ..+++++|||||++|+|+|..+.++
T Consensus 173 IATGs~p~~p~ipG~~~-~---~~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~--- 225 (499)
T PLN02507 173 IATGSRAQRPNIPGKEL-A---ITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGM--- 225 (499)
T ss_pred EecCCCCCCCCCCCccc-e---echHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHc---
Confidence 99999999999999642 1 1223322211 1235999999999999999999886
Q ss_pred HHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCe
Q 011476 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 249 ~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (485)
|.+|+|+++.+++++.+++++...+++.|++.||+++++++|++++. +++.+.. .+|++ +++|.
T Consensus 226 -----------G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~-~~g~~--i~~D~ 291 (499)
T PLN02507 226 -----------GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVIT-DHGEE--FVADV 291 (499)
T ss_pred -----------CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEE-CCCcE--EEcCE
Confidence 68999999999999989999999999999999999999999999974 3455543 45654 99999
Q ss_pred EEEccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCC
Q 011476 327 VVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 327 vi~a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
|++++| +.|++..+ ++.+|+ +.+|+|.||+++|| +.|||||+|||+..+.
T Consensus 292 vl~a~G--~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~~~ 344 (499)
T PLN02507 292 VLFATG--RAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNRIN 344 (499)
T ss_pred EEEeec--CCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCCCc
Confidence 999999 78888544 677776 56789999999998 9999999999997544
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=4e-35 Score=299.61 Aligned_cols=274 Identities=22% Similarity=0.283 Sum_probs=201.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc---------------------------cccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT---------------------------VEAR 110 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~---------------------------~~~~ 110 (485)
.+||+||||||||++||..|++.|++|+|||+. .+|++++.....+.+ .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 489999999999999999999999999999985 577764322211110 1111
Q ss_pred c-----------cccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC-
Q 011476 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF- 178 (485)
Q Consensus 111 ~-----------~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~- 178 (485)
. +...+...+++.|+++ +.+++...+ .++|.+. +. .+.||+||||||++|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~~~--~~~v~v~-~~----------~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARFTK--DGTVEVN-GR----------DYTAPHILIATGGKPSFPE 145 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEEcc--CCEEEEC-CE----------EEEeCEEEEecCCCCCCCC
Confidence 1 1122445566678764 455554443 3566552 21 799999999999999998
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 179 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
++||.+ ... +.++. +. +.. .+++++|||||++|+|+|..|+++
T Consensus 146 ~i~g~~-~~~---~~~~~----------~~---~~~-------~~~~vvIIGgG~iG~E~A~~l~~~------------- 188 (450)
T TIGR01421 146 NIPGAE-LGT---DSDGF----------FA---LEE-------LPKRVVIVGAGYIAVELAGVLHGL------------- 188 (450)
T ss_pred CCCCCc-eeE---cHHHh----------hC---ccc-------cCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 899864 111 11111 11 111 235999999999999999999987
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--c-EEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--E-IFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~-v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+||++++.+++++.+++++.+.+++.|++.||++++++.+++++.+ + +.+.. ++|+ ..++||.|+||+| +
T Consensus 189 -g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-~~g~-~~i~~D~vi~a~G--~ 263 (450)
T TIGR01421 189 -GSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-EDGK-SIDDVDELIWAIG--R 263 (450)
T ss_pred -CCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-CCCc-EEEEcCEEEEeeC--C
Confidence 689999999999999999999999999999999999999999999742 2 33333 4563 2499999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
.|++..| ++.+++ +.+|+|.||+++|| +.|||||+|||+..+.. ...+..++..
T Consensus 264 ~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~-~~~A~~~g~~ 320 (450)
T TIGR01421 264 KPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVEL-TPVAIAAGRK 320 (450)
T ss_pred CcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCccc-HHHHHHHHHH
Confidence 8888544 577777 67889999999998 99999999999976443 3444444443
No 16
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-35 Score=300.17 Aligned_cols=285 Identities=17% Similarity=0.230 Sum_probs=205.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc--------------------------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~--------------------------~~~~ 110 (485)
.++||+||||||||++||..|++.|++|+|||+.+.+|++++.....+.+ .+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35899999999999999999999999999999987788865332211110 1111
Q ss_pred cccc-----------chHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCC-C
Q 011476 111 SIVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT-F 178 (485)
Q Consensus 111 ~~~~-----------~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~-~ 178 (485)
.+.. .+..++++.|++ ++.+++..++. +++.+... +++...+.||+||||||++|+. |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g~a~~~~~--~~v~v~~~------~g~~~~~~~d~lViATGs~p~~~p 152 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVT--VVNGLGKFTGG--NTLEVTGE------DGKTTVIEFDNAIIAAGSRPIQLP 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEEecC------CCceEEEEcCEEEEeCCCCCCCCC
Confidence 1111 122345666866 67788887765 55555432 1112479999999999999974 4
Q ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 179 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
.+++..++++ +..++..+ . ..+++++|||||++|+|+|..+.++
T Consensus 153 ~~~~~~~~v~---~~~~~~~~-------------~-------~~~~~vvIiGgG~iG~E~A~~l~~~------------- 196 (471)
T PRK06467 153 FIPHDDPRIW---DSTDALEL-------------K-------EVPKRLLVMGGGIIGLEMGTVYHRL------------- 196 (471)
T ss_pred CCCCCCCcEE---ChHHhhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 4565433332 22222211 1 1235999999999999999999987
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEc-CCCeEEEEecCeEEEccCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+||++++.+++++.+++++...+++.|++. |++++++++++++. +.+.+... .+|+..++++|.|++|+| .
T Consensus 197 -G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G--~ 272 (471)
T PRK06467 197 -GSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVG--R 272 (471)
T ss_pred -CCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeec--c
Confidence 68999999999999999999999999999998 99999999999973 34444321 223334599999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhc
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a 393 (485)
.|++..+ ++..|+ +.+|+|.||+++|| +.|+|||+|||+..+. ....+..++..++
T Consensus 273 ~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~-la~~A~~eG~~aa 331 (471)
T PRK06467 273 VPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM-LAHKGVHEGHVAA 331 (471)
T ss_pred cccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc-cHHHHHHHHHHHH
Confidence 8988544 566776 67899999999998 9999999999987644 2444555555443
No 17
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.4e-35 Score=298.25 Aligned_cols=269 Identities=22% Similarity=0.366 Sum_probs=199.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC-cccCCCccccccCcc---------ccccc-----------ccch
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCGTV---------EARSI-----------VEPV 116 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~-~~~~~~~~~~~~~~~---------~~~~~-----------~~~~ 116 (485)
.+||+||||||||++||..|++.|++|+|||+++. +|++++.....+... +..++ ....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999864 576543222221111 11111 1112
Q ss_pred HHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHH
Q 011476 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDA 196 (485)
Q Consensus 117 ~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~ 196 (485)
.+.+.+.+++ ++.+++..++ .+++.+..+. +...+.||+||||||++|+.|++||.++... +.+..+.
T Consensus 83 ~~~~~~~gV~--~~~g~~~~~~--~~~v~v~~~~-------~~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~ 150 (438)
T PRK07251 83 YAMLAGSGVD--LYDAEAHFVS--NKVIEVQAGD-------EKIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGI 150 (438)
T ss_pred HHHHHhCCCE--EEEEEEEEcc--CCEEEEeeCC-------CcEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHH
Confidence 3456667866 5667676653 4677765421 1237999999999999999999999743211 1111111
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccc
Q 011476 197 QRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF 276 (485)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~ 276 (485)
.. +. ..+++++|||||++|+|+|..++++ |.+|+++++.+++++..
T Consensus 151 ~~-------------~~-------~~~~~vvIIGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 151 QS-------------LE-------TLPERLGIIGGGNIGLEFAGLYNKL--------------GSKVTVLDAASTILPRE 196 (438)
T ss_pred hc-------------ch-------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCccCCCC
Confidence 11 11 1235999999999999999999886 68999999999999988
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHH-HHHhCC--CCC
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--TNR 351 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~g~--~~~ 351 (485)
++++...+.+.|++.||+++++++|++++.+ .+.+.. +|++ +++|.|++|+| ..|+++.+ ++..++ +.+
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~--i~~D~viva~G--~~p~~~~l~l~~~~~~~~~~ 270 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET--YRFDALLYATG--RKPNTEPLGLENTDIELTER 270 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE--EEcCEEEEeeC--CCCCcccCCchhcCcEECCC
Confidence 9999999999999999999999999999753 343332 4554 99999999999 68887544 455565 567
Q ss_pred CceeeCCCccccCCCCeEEeccccCCCC
Q 011476 352 RALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 352 g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
|+|.||+++|| +.|||||+|||+..+.
T Consensus 271 g~i~vd~~~~t-~~~~IyaiGD~~~~~~ 297 (438)
T PRK07251 271 GAIKVDDYCQT-SVPGVFAVGDVNGGPQ 297 (438)
T ss_pred CcEEECCCccc-CCCCEEEeeecCCCcc
Confidence 89999999998 9999999999997644
No 18
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=9.4e-35 Score=299.29 Aligned_cols=282 Identities=20% Similarity=0.276 Sum_probs=207.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc--------------------------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~--------------------------~~~~ 110 (485)
..+||+||||||||++||++|++.|++|+|||+.+.+|+++......+.. .+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 35899999999999999999999999999999987788764322211100 0011
Q ss_pred cc-----------ccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 111 SI-----------VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 111 ~~-----------~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++ ...+.+++++.+++ ++.+++..++.....+...++ +...+.||+||||||+.|+.|+
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~~~~v~~~~g--------~~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVD--LIQGRARFVDPHTVEVECPDG--------EVETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEEecCCEEEEEeCCC--------ceEEEEcCEEEEcCCCCCCCCC
Confidence 11 11234456667866 567778777764333333222 1237999999999999999888
Q ss_pred CCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 180 TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 180 i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
+++.+ ..++ +..+ +.. . . ..+++++|||||++|+|+|..++++
T Consensus 154 ~~~~~~~~v~---~~~~---~~~-------~---~-------~~~~~v~IiGgG~~g~E~A~~l~~~------------- 197 (461)
T PRK05249 154 DVDFDHPRIY---DSDS---ILS-------L---D-------HLPRSLIIYGAGVIGCEYASIFAAL------------- 197 (461)
T ss_pred CCCCCCCeEE---cHHH---hhc-------h---h-------hcCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 77754 2222 2111 111 0 0 1236999999999999999999987
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (485)
|.+|+++++++++++.+++++...+.+.+++.||++++++.+++++ ++++.+.. .+|+. +++|.|++|+| ..
T Consensus 198 -g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vi~a~G--~~ 271 (461)
T PRK05249 198 -GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHL-KSGKK--IKADCLLYANG--RT 271 (461)
T ss_pred -CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEE-CCCCE--EEeCEEEEeec--CC
Confidence 6899999999999999999999999999999999999999999997 34455443 45664 99999999999 78
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 337 p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
|++..+ ++.+++ +.+|.|.||+++|| +.|+|||+|||+..+.. ...+..++..+
T Consensus 272 p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~-~~~A~~~g~~a 328 (461)
T PRK05249 272 GNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSL-ASASMDQGRIA 328 (461)
T ss_pred ccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCccc-HhHHHHHHHHH
Confidence 888544 567776 56789999999998 99999999999975443 44444444433
No 19
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.5e-34 Score=299.08 Aligned_cols=270 Identities=16% Similarity=0.277 Sum_probs=196.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc-------------------------cccc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT-------------------------VEAR 110 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~-------------------------~~~~ 110 (485)
...+||+||||||||++||..+++.|.+|+|||++ .+|++++..+..+.+ .+..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 45789999999999999999999999999999986 577765332221110 1111
Q ss_pred c-----------cccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEe------------cCCccCC--------CCCce
Q 011476 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCR------------SSQNTNL--------NGKEE 159 (485)
Q Consensus 111 ~-----------~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~------------~~~~~~~--------~~~~~ 159 (485)
. +...+.+.+++.||+ ++.++...+++ ++|.+. ++.+.+. +++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-- 198 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSE--NQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecC--CEEEeeccccccccccccccccceeeeccceecCCC--
Confidence 1 112234455667766 67777766653 333220 0000000 111
Q ss_pred EEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHH
Q 011476 160 FCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (485)
Q Consensus 160 ~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A 239 (485)
..+.||+||||||++|+.|++||.+ .++ +.++.. + ++ .+++++|||||++|+|+|
T Consensus 199 ~~i~ad~lVIATGS~P~~P~IpG~~-~v~---ts~~~~----------~---l~--------~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 199 QVIEGKNILIAVGNKPIFPDVKGKE-FTI---SSDDFF----------K---IK--------EAKRIGIAGSGYIAVELI 253 (561)
T ss_pred cEEECCEEEEecCCCCCCCCCCCce-eEE---EHHHHh----------h---cc--------CCCEEEEECCcHHHHHHH
Confidence 2799999999999999999999963 222 111111 1 11 146999999999999999
Q ss_pred HHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---cEEEEEcCC
Q 011476 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGN 316 (485)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~---~v~~~~~~~ 316 (485)
..+.++ |.+||++++++++++.+++++.+.+.+.|++.||++++++.+.+++++ ++.+....+
T Consensus 254 ~~l~~~--------------G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~ 319 (561)
T PTZ00058 254 NVVNRL--------------GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG 319 (561)
T ss_pred HHHHHc--------------CCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC
Confidence 999987 689999999999999999999999999999999999999999999753 344443222
Q ss_pred CeEEEEecCeEEEccCCCCCcchHHH-HHHhCC-CCCCceeeCCCccccCCCCeEEeccccC
Q 011476 317 GETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCAT 376 (485)
Q Consensus 317 G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~g~-~~~g~i~vd~~l~t~~~~~Vya~GD~~~ 376 (485)
++ ++++|.|++|+| +.|+++.+ ++.+++ ..+|+|.||+++|| +.|||||+|||+.
T Consensus 320 ~~--~i~aD~VlvA~G--r~Pn~~~L~l~~~~~~~~~G~I~VDe~lqT-s~p~IYA~GDv~~ 376 (561)
T PTZ00058 320 RK--YEHFDYVIYCVG--RSPNTEDLNLKALNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCM 376 (561)
T ss_pred CE--EEECCEEEECcC--CCCCccccCccccceecCCCeEEECcCCcc-CCCCEEEeEeccC
Confidence 33 499999999999 78998544 344454 56789999999998 9999999999998
No 20
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=7.6e-35 Score=298.74 Aligned_cols=273 Identities=22% Similarity=0.287 Sum_probs=204.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC---------------------------ccccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------------TVEAR 110 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~---------------------------~~~~~ 110 (485)
.+||+||||||||++||..|++.|++|+|||+. .+|++++.....+. ..+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 67765432111110 01111
Q ss_pred c-----------cccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 111 ~-----------~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
. +...+++.+.+.|++ ++.+++..+++ ++|.+ ++. .+.||+||||||++|+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~v~~--~~v~~-~g~----------~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVD--LIEGFARFVDA--HTVEV-NGE----------RYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEE-CCE----------EEEeCEEEEecCCCCCCCC
Confidence 1 112234456667866 56777888865 56766 332 7999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCC
Q 011476 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (485)
Q Consensus 180 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~ 259 (485)
+||.+ .+.. ..+. +. +. ..+++++|||||++|+|+|..+.++
T Consensus 148 i~g~~-~~~~---~~~~----------~~---~~-------~~~~~vvViGgG~~g~E~A~~l~~~-------------- 189 (450)
T PRK06116 148 IPGAE-YGIT---SDGF----------FA---LE-------ELPKRVAVVGAGYIAVEFAGVLNGL-------------- 189 (450)
T ss_pred CCCcc-eeEc---hhHh----------hC---cc-------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 99964 2211 1111 10 11 1235999999999999999999886
Q ss_pred CceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Cc-EEEEEcCCCeEEEEecCeEEEccCCCCC
Q 011476 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (485)
+.+|+++++++.+++.+++++...+.+.|++.||+++++++|.+++. ++ +.+.. .+|+. ++||.|++|+| ..
T Consensus 190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~-~~g~~--i~~D~Vv~a~G--~~ 264 (450)
T PRK06116 190 GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTL-EDGET--LTVDCLIWAIG--RE 264 (450)
T ss_pred CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEE-cCCcE--EEeCEEEEeeC--CC
Confidence 68999999999999999999999999999999999999999999974 33 44443 46664 99999999999 78
Q ss_pred cchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 337 p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
|++..+ ++.+++ +.+|+|.||+++|| +.|||||+|||+..+.. ...++.++..
T Consensus 265 p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~-~~~A~~~g~~ 320 (450)
T PRK06116 265 PNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVEL-TPVAIAAGRR 320 (450)
T ss_pred cCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCc-HHHHHHHHHH
Confidence 888544 567776 67889999999998 99999999999975432 4444444443
No 21
>PLN02546 glutathione reductase
Probab=100.00 E-value=9.6e-35 Score=300.80 Aligned_cols=273 Identities=21% Similarity=0.300 Sum_probs=203.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcC---------CCCcccCCCccccccC----------------------
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP---------RNYFAFTPLLPSVTCG---------------------- 105 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~---------~~~~~~~~~~~~~~~~---------------------- 105 (485)
..+||+|||+||||+.||..+++.|.+|+|||+ ...+|++++..++.+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 358999999999999999999999999999995 1346776533222111
Q ss_pred -----cccc-----------cccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEE
Q 011476 106 -----TVEA-----------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169 (485)
Q Consensus 106 -----~~~~-----------~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lvi 169 (485)
..+. .++...+.+.+++.|++ ++.+++..+++. .+.+ ++. .+.||+|||
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~G~a~~vd~~--~V~v-~G~----------~~~~D~LVI 222 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVT--LIEGRGKIVDPH--TVDV-DGK----------LYTARNILI 222 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEeEEEEccCC--EEEE-CCE----------EEECCEEEE
Confidence 0111 01223345566777865 678888888873 5554 222 799999999
Q ss_pred ccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHH
Q 011476 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDED 249 (485)
Q Consensus 170 AtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~ 249 (485)
|||++|..|++||.+ .++ +..++. . ++ ..+++++|||||++|+|+|..|.++
T Consensus 223 ATGs~p~~P~IpG~~-~v~---~~~~~l----------~---~~-------~~~k~V~VIGgG~iGvE~A~~L~~~---- 274 (558)
T PLN02546 223 AVGGRPFIPDIPGIE-HAI---DSDAAL----------D---LP-------SKPEKIAIVGGGYIALEFAGIFNGL---- 274 (558)
T ss_pred eCCCCCCCCCCCChh-hcc---CHHHHH----------h---cc-------ccCCeEEEECCCHHHHHHHHHHHhc----
Confidence 999999999999963 221 111111 1 11 1346999999999999999999986
Q ss_pred HHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Cc-EEEEEcCCCeEEEEecCe
Q 011476 250 LFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 250 ~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~-v~~~~~~~G~~~~i~~D~ 326 (485)
+.+|+++++.+.+++.+++++...+++.|++.||++++++.+.++.. ++ +.+.. .+++ .+++|.
T Consensus 275 ----------g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~-~~g~--~~~~D~ 341 (558)
T PLN02546 275 ----------KSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKT-NKGT--VEGFSH 341 (558)
T ss_pred ----------CCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEE-CCeE--EEecCE
Confidence 68999999999999999999999999999999999999999999963 23 43332 3343 256999
Q ss_pred EEEccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHH
Q 011476 327 VVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAI 389 (485)
Q Consensus 327 vi~a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~ 389 (485)
|+|++| ..|++..| ++.+|+ +.+|+|.||+++|| ++|||||+|||+..... ...+..++
T Consensus 342 Viva~G--~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~~l-~~~A~~~g 403 (558)
T PLN02546 342 VMFATG--RKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRINL-TPVALMEG 403 (558)
T ss_pred EEEeec--cccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCccc-HHHHHHHH
Confidence 999999 78888554 678887 56789999999998 99999999999976443 33344443
No 22
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-35 Score=271.16 Aligned_cols=310 Identities=21% Similarity=0.281 Sum_probs=226.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC---------------------------ccc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------------TVE 108 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~---------------------------~~~ 108 (485)
...+|+.|||||.+|+++|+..+..|.++.|+|..-.+|+++......+. ..+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 34789999999999999999999999999999976566665422211111 111
Q ss_pred cc-------ccccch----HHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 109 AR-------SIVEPV----RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 109 ~~-------~~~~~~----~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
+. ..+.++ ++.+.+.+ |.++.++...+++..-.|...++. ...+.+.+++||||.+|.+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~--V~~i~G~a~f~~~~~v~V~~~d~~--------~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAA--VKLIEGRARFVSPGEVEVEVNDGT--------KIVYTAKHILIATGGRPII 167 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccc--eeEEeeeEEEcCCCceEEEecCCe--------eEEEecceEEEEeCCccCC
Confidence 11 111222 23333344 557899999998876677666543 2358999999999999999
Q ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCC
Q 011476 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (485)
Q Consensus 178 ~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~ 257 (485)
|+|||.+-+.. . ...| .|+. .++|++|||+|++++|+|..++.+
T Consensus 168 PnIpG~E~gid-S-------------Dgff---~Lee-------~Pkr~vvvGaGYIavE~Agi~~gL------------ 211 (478)
T KOG0405|consen 168 PNIPGAELGID-S-------------DGFF---DLEE-------QPKRVVVVGAGYIAVEFAGIFAGL------------ 211 (478)
T ss_pred CCCCchhhccc-c-------------cccc---chhh-------cCceEEEEccceEEEEhhhHHhhc------------
Confidence 99999853221 0 1112 2232 235999999999999999999998
Q ss_pred CCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 258 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|++++++-|.+.+|+.||+.++..+.+.|+.+||++|.++.++++.. ++........|.. ..+|.++||+| +
T Consensus 212 --gsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i--~~vd~llwAiG--R 285 (478)
T KOG0405|consen 212 --GSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI--EDVDTLLWAIG--R 285 (478)
T ss_pred --CCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc--ccccEEEEEec--C
Confidence 68999999999999999999999999999999999999999999864 2322222245652 45999999999 8
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc------------------
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD------------------ 394 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~------------------ 394 (485)
.|+++.| ++..|+ +.+|.|.||++.+| |+|+||++||+++.-.- ..-+++++...+.
T Consensus 286 ~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~L-TPVAiaagr~la~rlF~~~~~~kldY~nVp~ 363 (478)
T KOG0405|consen 286 KPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINL-TPVAIAAGRKLANRLFGGGKDTKLDYENVPC 363 (478)
T ss_pred CCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEec-chHHHhhhhhHHHHhhcCCCCCccccccCce
Confidence 9999998 899998 78999999999998 99999999999875221 1222222222211
Q ss_pred ----cCCCCccCHHHHHHHHHHhhccCC--chhhhh
Q 011476 395 ----KDNSGTLTVKEFQEVIKDICERYP--QVELYL 424 (485)
Q Consensus 395 ----~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~ 424 (485)
..+.|+++++|.+ +.++|. ++++|.
T Consensus 364 vVFshP~igtVGLtE~E-----Aiekyg~~~i~vy~ 394 (478)
T KOG0405|consen 364 VVFSHPPIGTVGLTEEE-----AIEKYGKGDIKVYT 394 (478)
T ss_pred EEEecCCcccccCCHHH-----HHHHhCccceEEEe
Confidence 1266999999988 556663 455543
No 23
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.3e-34 Score=297.91 Aligned_cols=276 Identities=23% Similarity=0.336 Sum_probs=199.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccccc--------------------C-------ccccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------G-------TVEAR 110 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~--------------------~-------~~~~~ 110 (485)
.+||+||||||||++||.+|++.|++|+|||+. .+|++++.....+ | ..+..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 589999999999999999999999999999986 4566543222110 1 11111
Q ss_pred ccc-----------cchHHHHhhC-CCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 111 SIV-----------EPVRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 111 ~~~-----------~~~~~~~~~~-gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
.+. ..+..++++. |+++ +.++...++ .+++.+. + ..+.||+||||||++|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~~~--~~~v~v~-~----------~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARFES--PNTVRVG-G----------ETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEEcc--CCEEEEC-c----------EEEEeCEEEEcCCCCCCCC
Confidence 111 2234455665 7664 455555443 4666652 2 1789999999999999999
Q ss_pred CCCCCCC-ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCC
Q 011476 179 NTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (485)
Q Consensus 179 ~i~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~ 257 (485)
++||.+. .++ +..+... . . ..+++++|||||++|+|+|..+.++
T Consensus 149 ~i~G~~~~~~~---~~~~~~~----------~---~-------~~~~~vvVIGgG~~g~E~A~~l~~~------------ 193 (463)
T PRK06370 149 PIPGLDEVGYL---TNETIFS----------L---D-------ELPEHLVIIGGGYIGLEFAQMFRRF------------ 193 (463)
T ss_pred CCCCCCcCceE---cchHhhC----------c---c-------ccCCEEEEECCCHHHHHHHHHHHHc------------
Confidence 9999853 222 1111110 0 0 1235999999999999999999986
Q ss_pred CCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 258 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|.+++.+ .+.+....++...++++|.||+|+| .
T Consensus 194 --G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G--~ 269 (463)
T PRK06370 194 --GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG--R 269 (463)
T ss_pred --CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC--C
Confidence 689999999999999999999999999999999999999999999753 3322221122223499999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
.|++..| ++..|+ +.+|+|.||+++|| +.|+|||+|||+..+.. ...+..++.
T Consensus 270 ~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~-~~~A~~~g~ 325 (463)
T PRK06370 270 VPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAF-THTAYNDAR 325 (463)
T ss_pred CcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCccc-HHHHHHHHH
Confidence 8888546 677777 66789999999998 99999999999876443 333333433
No 24
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-34 Score=296.55 Aligned_cols=270 Identities=22% Similarity=0.346 Sum_probs=197.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC-cccCCCccccccCc---------cccc-------ccccch----
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCGT---------VEAR-------SIVEPV---- 116 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~-~~~~~~~~~~~~~~---------~~~~-------~~~~~~---- 116 (485)
.+||+||||||||++||.+|++.|++|+|||+.+. +|+++......+.. .+.. .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 48999999999999999999999999999998764 56654322221111 0000 011111
Q ss_pred -HHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhH
Q 011476 117 -RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVED 195 (485)
Q Consensus 117 -~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~ 195 (485)
.++.+..+++ ++.+++..++.....+...++ ...+.||+||||||++|..|++||.++... +.+..+
T Consensus 83 ~~~~~~~~gv~--~~~g~~~~i~~~~~~v~~~~g---------~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~ 150 (441)
T PRK08010 83 FHNLADMPNID--VIDGQAEFINNHSLRVHRPEG---------NLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTG 150 (441)
T ss_pred HHHHhhcCCcE--EEEEEEEEecCCEEEEEeCCC---------eEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhH
Confidence 1222233655 677888888774433433222 136899999999999999999999753211 111111
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc
Q 011476 196 AQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275 (485)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~ 275 (485)
+ +. +. ..+++++|||||++|+|+|..+.++ +.+|+++++.+.+++.
T Consensus 151 ---~-------~~---~~-------~~~~~v~ViGgG~~g~E~A~~l~~~--------------g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 151 ---L-------LN---LK-------ELPGHLGILGGGYIGVEFASMFANF--------------GSKVTILEAASLFLPR 196 (441)
T ss_pred ---h-------hc---cc-------ccCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCC
Confidence 1 11 11 1235999999999999999999987 6899999999999998
Q ss_pred ccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHH-HHHhCC--CC
Q 011476 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--TN 350 (485)
Q Consensus 276 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~g~--~~ 350 (485)
+++++...+.+.|++.||++++++.|++++.+ .+.+.. .+++ +++|.|++|+| ..|++..+ ++.+|+ +.
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~-~~g~---i~~D~vl~a~G--~~pn~~~l~~~~~gl~~~~ 270 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS-EHAQ---LAVDALLIASG--RQPATASLHPENAGIAVNE 270 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-cCCe---EEeCEEEEeec--CCcCCCCcCchhcCcEECC
Confidence 89999999999999999999999999999743 344433 3343 88999999999 78888443 567776 56
Q ss_pred CCceeeCCCccccCCCCeEEeccccCCCCc
Q 011476 351 RRALATDEWLRVEGSDSIYALGDCATVNQR 380 (485)
Q Consensus 351 ~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~ 380 (485)
+|+|.||+++|| +.|||||+|||+..++.
T Consensus 271 ~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~ 299 (441)
T PRK08010 271 RGAIVVDKYLHT-TADNIWAMGDVTGGLQF 299 (441)
T ss_pred CCcEEECCCccc-CCCCEEEeeecCCCccc
Confidence 789999999998 99999999999986543
No 25
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-34 Score=298.78 Aligned_cols=287 Identities=21% Similarity=0.268 Sum_probs=204.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc--------------------------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEAR 110 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~--------------------------~~~~ 110 (485)
..+||+||||||||++||.+|++.|++|+|||+. .+|++++.....+.. .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4689999999999999999999999999999986 677765332211110 0100
Q ss_pred cc-----------ccchHHHHhhCCCeEEEEEeEEEEEecC-----CCEEEEecCCccCCCCCceEEeecCEEEEccCCC
Q 011476 111 SI-----------VEPVRNIVRKKNVDICFWEAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174 (485)
Q Consensus 111 ~~-----------~~~~~~~~~~~gv~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~ 174 (485)
.+ ......++++.+++ ++.+++..+++. .+++.+...+ ++...+.||+||||||++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~a~~i~~~~~~~~~~~~~v~~~~------g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKID--VFHGIGRILGPSIFSPMPGTVSVETET------GENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEeCCCCCcCCceEEEEEeCC------CceEEEEcCEEEEeCCCC
Confidence 11 11223455667766 678889999876 2245443211 112379999999999999
Q ss_pred CCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhC
Q 011476 175 ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (485)
Q Consensus 175 ~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~ 254 (485)
|+.++..+. .+.. +.+..++..+ . ..+++++|||||++|+|+|..|.++
T Consensus 154 p~~~p~~~~-~~~~-~~~~~~~~~~-------------~-------~~~~~vvIIGgG~~G~E~A~~l~~~--------- 202 (472)
T PRK05976 154 PVELPGLPF-DGEY-VISSDEALSL-------------E-------TLPKSLVIVGGGVIGLEWASMLADF--------- 202 (472)
T ss_pred CCCCCCCCC-CCce-EEcchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHc---------
Confidence 975432221 1211 1122222111 1 1235999999999999999999986
Q ss_pred cCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe---CCcEEEEEcCCCeEEEEecCeEEEcc
Q 011476 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWST 331 (485)
Q Consensus 255 p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~---~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (485)
|.+||++++.+++++.+++++...+.+.|++.||++++++++++++ .+++......+|+..++++|.|++|+
T Consensus 203 -----g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 203 -----GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred -----CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 6899999999999999999999999999999999999999999997 45555544356765569999999999
Q ss_pred CCCCCcchHHH-HHHhCC-CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 332 GIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 332 G~~~~p~~~~l-~~~~g~-~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
| ..|++..+ ++.+++ ..+|+|.||++++| +.|+|||+|||+..+. ....+..++..+
T Consensus 278 G--~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t-s~~~IyAiGD~~~~~~-~~~~A~~~g~~a 336 (472)
T PRK05976 278 G--RRPNTEGIGLENTDIDVEGGFIQIDDFCQT-KERHIYAIGDVIGEPQ-LAHVAMAEGEMA 336 (472)
T ss_pred C--CccCCCCCCchhcCceecCCEEEECCCccc-CCCCEEEeeecCCCcc-cHHHHHHHHHHH
Confidence 9 68887544 456666 35688999999998 8999999999987543 244444444433
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.5e-34 Score=297.67 Aligned_cols=278 Identities=22% Similarity=0.281 Sum_probs=203.5
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC-------------------------cccc----
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG-------------------------TVEA---- 109 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~-------------------------~~~~---- 109 (485)
+||+||||||||++||..|++.|++|+|||+.+ +|++++.....+. ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 7776432211110 0011
Q ss_pred ---ccccc-----chHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 011476 110 ---RSIVE-----PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (485)
Q Consensus 110 ---~~~~~-----~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~ 181 (485)
+++.. .+..++++.+++ ++.+++..++ .+++.+.++. ..+.||+||||||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~~~--~~~v~v~~g~---------~~~~~~~lIiATGs~p~~p~i~ 146 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVD--YLRGRARFKD--PKTVKVDLGR---------EVRGAKRFLIATGARPAIPPIP 146 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcE--EEEEEEEEcc--CCEEEEcCCe---------EEEEeCEEEEcCCCCCCCCCCC
Confidence 01111 134566777866 5677777665 4667664321 2689999999999999999999
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCc
Q 011476 182 GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSV 261 (485)
Q Consensus 182 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~ 261 (485)
|.+... +.+..+... . . ..+++++|||+|++|+|+|..|.++ |.
T Consensus 147 G~~~~~--~~~~~~~~~----------~---~-------~~~~~vvIIGgG~~g~E~A~~l~~~--------------g~ 190 (463)
T TIGR02053 147 GLKEAG--YLTSEEALA----------L---D-------RIPESLAVIGGGAIGVELAQAFARL--------------GS 190 (463)
T ss_pred CcccCc--eECchhhhC----------c---c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------CC
Confidence 975321 122222111 0 0 1235999999999999999999986 68
Q ss_pred eEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 262 ~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
+||++++.+++++.+++++...+++.+++.||+++++++|++++.+ .+.+....++...++++|.|++|+| ..|++
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G--~~p~~ 268 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG--RRPNT 268 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC--CCcCC
Confidence 9999999999999999999999999999999999999999999753 2333221222223599999999999 78888
Q ss_pred HHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 340 KDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 340 ~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
..| ++..++ +.+|+|.||+++|| +.|+|||+|||+..+. ....+..++.
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~-~~~~A~~~g~ 320 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQ-LEYVAAKEGV 320 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcc-cHhHHHHHHH
Confidence 546 677776 56889999999998 9999999999998643 2334444443
No 27
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.9e-34 Score=295.53 Aligned_cols=286 Identities=21% Similarity=0.266 Sum_probs=205.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC-CCcEEEEcCC--------CCcccCCCccccccCc---------------------
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPR--------NYFAFTPLLPSVTCGT--------------------- 106 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~-g~~V~lie~~--------~~~~~~~~~~~~~~~~--------------------- 106 (485)
..+||+||||||||..||..+++. |.+|+|||+. ..+|++++...+.+.+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 358999999999999999999986 9999999973 4678765432221110
Q ss_pred -------cccccc-----------ccchHHHHhh-CCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEE
Q 011476 107 -------VEARSI-----------VEPVRNIVRK-KNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYL 167 (485)
Q Consensus 107 -------~~~~~~-----------~~~~~~~~~~-~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~l 167 (485)
.+...+ ...+.+.+++ .|++ +++++...+++ ++|.+....+ ..+.+.+.+.||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~G~a~f~~~--~~v~V~~~~~--~~~~~~~~~~~d~l 155 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFLGWGALEDK--NVVLVRESAD--PKSAVKERLQAEHI 155 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEEEEEEEccC--CEEEEeeccC--CCCCcceEEECCEE
Confidence 011011 1112233554 3654 78888877764 6677653210 00111247999999
Q ss_pred EEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhH
Q 011476 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (485)
Q Consensus 168 viAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~ 247 (485)
|||||++|+.|++||.+. +. +..++.. +. ..+++++|||||++|+|+|..+..+..
T Consensus 156 IIATGs~p~~p~i~G~~~-~~---~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIEH-CI---SSNEAFY-------------LD-------EPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred EEecCCCCCCCCCCChhh-ee---chhhhhc-------------cc-------cCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 999999999999999642 22 2222111 11 123599999999999999998876521
Q ss_pred HHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--Cc-EEEEEcCCCeEEEEec
Q 011476 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPY 324 (485)
Q Consensus 248 ~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~-v~~~~~~~G~~~~i~~ 324 (485)
.|.+|||+++.+++++.+++++.+.+++.|++.||++++++.+++++. ++ ..+.. .+|+. +++
T Consensus 212 -----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-~~g~~--i~~ 277 (486)
T TIGR01423 212 -----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-ESGKT--LDV 277 (486)
T ss_pred -----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-cCCCE--EEc
Confidence 268999999999999999999999999999999999999999999974 23 33333 45654 999
Q ss_pred CeEEEccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 325 GMVVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 325 D~vi~a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
|.|+||+| +.|++..+ ++.+|+ +.+|+|.||+++|| +.|||||+|||+..+.. ...++.++.
T Consensus 278 D~vl~a~G--~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~~~~l-~~~A~~qG~ 342 (486)
T TIGR01423 278 DVVMMAIG--RVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDRVML-TPVAINEGA 342 (486)
T ss_pred CEEEEeeC--CCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCCCccc-HHHHHHHHH
Confidence 99999999 78888544 567777 57789999999998 99999999999976543 334444444
No 28
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4e-34 Score=294.34 Aligned_cols=281 Identities=21% Similarity=0.288 Sum_probs=204.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccccc---------------------Cc------cc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC---------------------GT------VE 108 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~---------------------~~------~~ 108 (485)
...++|+||||||||++||..|++.|.+|+|||+. .+|+++..+...+ +. .+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 45789999999999999999999999999999986 4666543222110 10 01
Q ss_pred ccccccc------------hHHHHhhC-CCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 109 ARSIVEP------------VRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 109 ~~~~~~~------------~~~~~~~~-gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
...+... ++..++++ + +.++.+++..+|+....|.+.++. ...+.||+||||||++|
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~~g~v~~id~~~~~V~~~~g~--------~~~~~~d~lViATGs~p 152 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAA--ITVLNGEARFVDERTLTVTLNDGG--------EQTVHFDRAFIGTGARP 152 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCC--eEEEEEEEEEecCCEEEEEecCCC--------eEEEECCEEEEeCCCCC
Confidence 1111111 12223333 5 457889999999877777765432 23799999999999999
Q ss_pred CCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCc
Q 011476 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (485)
Q Consensus 176 ~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p 255 (485)
+.|++||.+... +.+..++..+. ..+++++|||+|++|+|+|..|.++
T Consensus 153 ~~p~i~G~~~~~--~~~~~~~~~l~--------------------~~~~~vvViG~G~~G~E~A~~l~~~---------- 200 (468)
T PRK14694 153 AEPPVPGLAETP--YLTSTSALELD--------------------HIPERLLVIGASVVALELAQAFARL---------- 200 (468)
T ss_pred CCCCCCCCCCCc--eEcchhhhchh--------------------cCCCeEEEECCCHHHHHHHHHHHHc----------
Confidence 999999986421 11222222110 1235999999999999999999987
Q ss_pred CCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 256 ~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+|+++++ +++++.+++++.+.+++.|++.||++++++.+.+++.++ +.+.. .++ + +++|.|++|+|
T Consensus 201 ----g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~-~~~-~--i~~D~vi~a~G- 270 (468)
T PRK14694 201 ----GSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILET-NAG-T--LRAEQLLVATG- 270 (468)
T ss_pred ----CCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-CCC-E--EEeCEEEEccC-
Confidence 689999986 577888899999999999999999999999999997532 33332 333 3 99999999999
Q ss_pred CCCcchHHH-HHHhCC-CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 334 APHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 334 ~~~p~~~~l-~~~~g~-~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
..|++..+ ++.+|+ ..+|+|.||+++|| +.|+|||+|||+..+.. +..+..++..+
T Consensus 271 -~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~-~~~A~~~G~~a 328 (468)
T PRK14694 271 -RTPNTENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAGDCTDQPQF-VYVAAAGGSRA 328 (468)
T ss_pred -CCCCcCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEeecCCCccc-HHHHHHHHHHH
Confidence 68888433 466777 45788999999998 99999999999986553 44444444433
No 29
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.6e-34 Score=279.74 Aligned_cols=286 Identities=16% Similarity=0.143 Sum_probs=201.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC----Ccccccc--CcccccccccchHHHHhhCCCeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP----LLPSVTC--GTVEARSIVEPVRNIVRKKNVDICF 129 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~gv~v~~ 129 (485)
...++|+||||||||++||.+|++.|+++++||.. ..++.. ..+.++. .......+.+.+.+....+++++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI-- 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--
Confidence 45689999999999999999999999999999954 344321 1111111 11222344566677777777654
Q ss_pred EEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhh
Q 011476 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEK 209 (485)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (485)
...++..|+...+.+.+.... ..+.||+||+|||+.|+.|++||.+.. ..+.+.......
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~---------~~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~~--------- 140 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDS---------GEYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATCD--------- 140 (321)
T ss_pred EeeEEEEEEecCCeEEEEecC---------CEEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecCC---------
Confidence 445677888777776664321 168999999999999999999996421 011110000000
Q ss_pred cCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHH
Q 011476 210 ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289 (485)
Q Consensus 210 ~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~ 289 (485)
.....+++++|||+|++|+|+|..|.++ +.+|+++++.+.+. .++.+.+.+++.|+
T Consensus 141 --------~~~~~g~~vvVvGgG~~g~e~A~~l~~~--------------~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~ 196 (321)
T PRK10262 141 --------GFFYRNQKVAVIGGGNTAVEEALYLSNI--------------ASEVHLIHRRDGFR--AEKILIKRLMDKVE 196 (321)
T ss_pred --------HHHcCCCEEEEECCCHHHHHHHHHHHhh--------------CCEEEEEEECCccC--CCHHHHHHHHhhcc
Confidence 0113567999999999999999999987 68999999988653 34567788889999
Q ss_pred hCCcEEEcCceEEEEeCCc-----EEEEEcC-CCeEEEEecCeEEEccCCCCCcchHHHHHHhCC-CCCCceeeCC----
Q 011476 290 RDGIDVKLGSMVVKVTDKE-----IFTKVRG-NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE---- 358 (485)
Q Consensus 290 ~~gV~v~~~~~v~~v~~~~-----v~~~~~~-~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-~~~g~i~vd~---- 358 (485)
+.||++++++.++++.++. +++.... +++..++++|.|+|++| ..|+. .+++. ++ ..+|+|.||+
T Consensus 197 ~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G--~~p~~-~l~~~-~l~~~~g~i~vd~~~~~ 272 (321)
T PRK10262 197 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG--HSPNT-AIFEG-QLELENGYIKVQSGIHG 272 (321)
T ss_pred CCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeC--CccCh-hHhhc-cccccCCEEEECCCCcc
Confidence 9999999999999997652 3333221 23345699999999999 68888 45442 34 3468899997
Q ss_pred -CccccCCCCeEEeccccCCCCcchHHHHHHHHhhc
Q 011476 359 -WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (485)
Q Consensus 359 -~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a 393 (485)
+++| +.|+|||+|||+..+..++..++.++..+|
T Consensus 273 ~~~~t-~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa 307 (321)
T PRK10262 273 NATQT-SIPGVFAAGDVMDHIYRQAITSAGTGCMAA 307 (321)
T ss_pred ccccc-CCCCEEECeeccCCCcceEEEEehhHHHHH
Confidence 6787 999999999999765555555666655444
No 30
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.5e-34 Score=291.32 Aligned_cols=271 Identities=20% Similarity=0.311 Sum_probs=192.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcc---------------------------ccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTV---------------------------EAR 110 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~---------------------------~~~ 110 (485)
.+||+||||||||++||.++++.|++|+|||+++.+|++++.....+.+. +..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 47999999999999999999999999999998777888653332211110 000
Q ss_pred ccc-----------cchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 111 SIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 111 ~~~-----------~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++. ..+..++++.+++ ++.+++...+. +++.+... +++...+.||+||||||++|. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~~--~~v~v~~~------~g~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVD--WIKGWGRLDGV--GKVVVKAE------DGSETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEEEcC------CCceEEEEeCEEEEeCCCCCC--C
Confidence 000 1122334455655 56676644332 34544321 112247999999999999985 4
Q ss_pred CCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 180 TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 180 i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
+||.+ ++...+ +..+ .+. ++ ..+++++|||||++|+|+|..+.++
T Consensus 151 ipg~~~~~~~~~-~~~~----------~~~---~~-------~~~~~vvIIGgG~ig~E~A~~l~~~------------- 196 (466)
T PRK06115 151 LPGVTIDNQRII-DSTG----------ALS---LP-------EVPKHLVVIGAGVIGLELGSVWRRL------------- 196 (466)
T ss_pred CCCCCCCCCeEE-CHHH----------HhC---Cc-------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 67754 232222 1111 111 11 1246999999999999999999986
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEE--EcCCCeEEEEecCeEEEccCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTK--VRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~--~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
|.+||++++.+++++.+++++.+.+.+.|++.||++++++++++++++ .+.+. ...+|+..++++|.|++|+|
T Consensus 197 -G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G-- 273 (466)
T PRK06115 197 -GAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG-- 273 (466)
T ss_pred -CCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC--
Confidence 689999999999999999999999999999999999999999999753 44332 22234444599999999999
Q ss_pred CCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCC
Q 011476 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 335 ~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
..|++..| ++..++ +.+| +.||+++|| +.|+|||+|||+..++
T Consensus 274 ~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~~ 319 (466)
T PRK06115 274 RRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGPM 319 (466)
T ss_pred CccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCcc
Confidence 78988545 566676 3444 789999998 9999999999998654
No 31
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.1e-33 Score=290.50 Aligned_cols=281 Identities=20% Similarity=0.243 Sum_probs=201.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC--------CcccCCCcccccc--------------------Cc---
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTC--------------------GT--- 106 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~~~~~~~~~--------------------~~--- 106 (485)
.+||+|||+||||+.+|..+++.|.+|+|||+.. .+|++++.....+ +.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999631 3566543211111 00
Q ss_pred ----ccccc-----------cccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEcc
Q 011476 107 ----VEARS-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (485)
Q Consensus 107 ----~~~~~-----------~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAt 171 (485)
.+... +...+...++..|++ ++++.+..+++. ++.+.+.. ++...+.||+|||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~G~a~f~~~~--~v~v~~~~------g~~~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YENAYAEFVDKH--RIKATNKK------GKEKIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEcCCC--EEEEeccC------CCceEEEeCEEEEec
Confidence 00000 112234456777866 788989888764 56654321 112379999999999
Q ss_pred CCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHH
Q 011476 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (485)
Q Consensus 172 G~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~ 251 (485)
|++|+.|++||.++... +..+. +. ++. ..++++|||||++|+|+|..|.++
T Consensus 152 Gs~p~~p~ipG~~~~~~---~~~~~----------~~---~~~-------~~~~vvIIGgG~iG~E~A~~l~~~------ 202 (484)
T TIGR01438 152 GERPRYPGIPGAKELCI---TSDDL----------FS---LPY-------CPGKTLVVGASYVALECAGFLAGI------ 202 (484)
T ss_pred CCCCCCCCCCCccceee---cHHHh----------hc---ccc-------cCCCEEEECCCHHHHHHHHHHHHh------
Confidence 99999999999754322 11111 11 111 224899999999999999999987
Q ss_pred hhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCe-EEEEecCeEE
Q 011476 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGE-TSSMPYGMVV 328 (485)
Q Consensus 252 ~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~-~~~i~~D~vi 328 (485)
|.+||++++ +.+++.+++++.+.+++.|++.||++++++.+.+++. +.+.+.. .+|+ ..++++|.|+
T Consensus 203 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~~~~~~~i~~D~vl 272 (484)
T TIGR01438 203 --------GLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTF-TDSTNGIEEEYDTVL 272 (484)
T ss_pred --------CCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE-ecCCcceEEEeCEEE
Confidence 689999997 5788999999999999999999999999999988864 3344433 2332 2349999999
Q ss_pred EccCCCCCcchHHH-HHHhCC--CC-CCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 329 WSTGIAPHAIIKDF-MKQVGQ--TN-RRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~g~--~~-~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
||+| +.||+..| ++.+|+ +. +|+|.||+++|| +.|+|||+|||+.........+..++.
T Consensus 273 ~a~G--~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~~~~l~~~A~~~g~ 335 (484)
T TIGR01438 273 LAIG--RDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILEDKQELTPVAIQAGR 335 (484)
T ss_pred EEec--CCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCCCccchHHHHHHHH
Confidence 9999 78988544 567777 33 488999999998 999999999998643332333444443
No 32
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.1e-33 Score=275.20 Aligned_cols=278 Identities=18% Similarity=0.240 Sum_probs=200.8
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCc----ccccc--CcccccccccchHHHHhhCCCeEEEEEe
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL----PSVTC--GTVEARSIVEPVRNIVRKKNVDICFWEA 132 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~gv~v~~~~~ 132 (485)
+||+|||||+||++||..|++.|++|+|||+.+ .++.... ..++. ......++...+++.++++++++. .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~--~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEII--YE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEE--EE
Confidence 589999999999999999999999999999876 3332111 11111 012223666778888888997763 38
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCc----cccccChhHHHHHHHHHHHHHh
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVIESFE 208 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~----~~~~~~~~~~~~~~~~~~~~~~ 208 (485)
+|..+++.++.+.+.... + ..+.||+||+|||++|+.|++||.+.. ++......
T Consensus 78 ~v~~v~~~~~~~~v~~~~-----~---~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-------------- 135 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGD-----G---KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD-------------- 135 (300)
T ss_pred EEEEEEecCCeeEEEeCC-----C---CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC--------------
Confidence 899999887655544321 1 189999999999999999999986421 11110000
Q ss_pred hcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHH
Q 011476 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (485)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (485)
....++++++|||+|++|+|+|..+.+. +.+|+++++.+.+.. ...+.+.+
T Consensus 136 ---------~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------~~~V~~v~~~~~~~~------~~~~~~~l 186 (300)
T TIGR01292 136 ---------GPFFKNKEVAVVGGGDSAIEEALYLTRI--------------AKKVTLVHRRDKFRA------EKILLDRL 186 (300)
T ss_pred ---------hhhcCCCEEEEECCChHHHHHHHHHHhh--------------cCEEEEEEeCcccCc------CHHHHHHH
Confidence 0112457999999999999999999886 579999999876531 34456677
Q ss_pred HhC-CcEEEcCceEEEEeCCc----EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHh-CCCCCCceeeCCCccc
Q 011476 289 SRD-GIDVKLGSMVVKVTDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEWLRV 362 (485)
Q Consensus 289 ~~~-gV~v~~~~~v~~v~~~~----v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-g~~~~g~i~vd~~l~t 362 (485)
++. ||++++++++++++.++ +.+....+|+..++++|.++||+| ..|+. .+++.+ .++.+|++.||++++|
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G--~~~~~-~~l~~~~~~~~~g~i~v~~~~~t 263 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIG--HEPNT-ELLKGLLELDEGGYIVTDEGMRT 263 (300)
T ss_pred HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeC--CCCCh-HHHHHhheecCCCcEEECCCCcc
Confidence 777 99999999999998653 333332346556799999999999 67877 555554 3366789999999997
Q ss_pred cCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 363 EGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 363 ~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+.|||||+|||+.........++.++..+|.
T Consensus 264 -~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~ 294 (300)
T TIGR01292 264 -SVPGVFAAGDVRDKGYRQAVTAAGDGCIAAL 294 (300)
T ss_pred -CCCCEEEeecccCcchhhhhhhhhhHHHHHH
Confidence 9999999999998433445666666665543
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.5e-34 Score=298.74 Aligned_cols=279 Identities=20% Similarity=0.267 Sum_probs=200.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccc---------------------cCc------ccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT---------------------CGT------VEA 109 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~---------------------~~~------~~~ 109 (485)
..+||+||||||||++||..|++.|.+|+|||++ .+|++++..... .|. ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 677764322110 011 011
Q ss_pred cccccc------------hHHHHhhC-CCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 110 RSIVEP------------VRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 110 ~~~~~~------------~~~~~~~~-gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
..+... +..++.++ + ++++++++..+++....|.+.++ +...+.||+||||||++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~v~~~~g--------~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPA--ITVLHGEARFKDDQTLIVRLNDG--------GERVVAFDRCLIATGASPA 245 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCC--eEEEEEEEEEecCCEEEEEeCCC--------ceEEEEcCEEEEcCCCCCC
Confidence 111111 22233443 5 44788889888765434433222 1237999999999999999
Q ss_pred CCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcC
Q 011476 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (485)
Q Consensus 177 ~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~ 256 (485)
.|++||.+.. ..+ +..+. + ... ..+++++|||||++|+|+|..|.++
T Consensus 246 ~p~i~g~~~~-~~~-~~~~~--~--------~~~----------~~~~~vvViGgG~ig~E~A~~l~~~----------- 292 (561)
T PRK13748 246 VPPIPGLKET-PYW-TSTEA--L--------VSD----------TIPERLAVIGSSVVALELAQAFARL----------- 292 (561)
T ss_pred CCCCCCCCcc-ceE-ccHHH--h--------hcc----------cCCCeEEEECCCHHHHHHHHHHHHc-----------
Confidence 9999997532 112 11111 1 000 1235999999999999999999987
Q ss_pred CCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 257 ~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
|.+|+++++. .+++.+++++...+++.|++.||++++++.+++++. +.+.+.. .++ + +++|.|++|+|
T Consensus 293 ---g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~-~~~-~--i~~D~vi~a~G-- 362 (561)
T PRK13748 293 ---GSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTT-GHG-E--LRADKLLVATG-- 362 (561)
T ss_pred ---CCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEe-cCC-e--EEeCEEEEccC--
Confidence 6899999985 567778999999999999999999999999999964 2343332 334 3 99999999999
Q ss_pred CCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 335 ~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
..||+..+ ++.+|+ +.+|+|.||+++|| +.|||||+|||+..+.. +..++.++..
T Consensus 363 ~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~-~~~A~~~g~~ 420 (561)
T PRK13748 363 RAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQF-VYVAAAAGTR 420 (561)
T ss_pred CCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccc-hhHHHHHHHH
Confidence 78888544 577777 66789999999998 99999999999986543 3344444443
No 34
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.1e-33 Score=289.05 Aligned_cols=279 Identities=22% Similarity=0.311 Sum_probs=195.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCccc--ccccc----------------------
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE--ARSIV---------------------- 113 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~--~~~~~---------------------- 113 (485)
.+||+||||||||++||.+|++.|.+|+|||++ .+|++++.....+.... ..++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 489999999999999999999999999999985 56665433222111100 00000
Q ss_pred -------------cchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCC
Q 011476 114 -------------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (485)
Q Consensus 114 -------------~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i 180 (485)
......++..+++ .+.++...++. +++.+...+ ++...+.||+||||||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g~~~~~~~--~~v~v~~~~------g~~~~~~~d~lViATGs~p~~~-- 150 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKIT--EIHGYGTFTDA--NTLEVDLND------GGTETVTFDNAIIATGSSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEcCC--CEEEEEecC------CCeeEEEcCEEEEeCCCCCCCC--
Confidence 0011122234544 45666655554 555554321 1124799999999999999764
Q ss_pred CCCC--CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 181 PGVE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 181 ~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
||.+ ..++. ..+. + .. . ..+++++|||||++|+|+|..++++
T Consensus 151 pg~~~~~~v~~---~~~~------~----~~---~-------~~~~~vvVIGgG~ig~E~A~~l~~~------------- 194 (466)
T PRK07818 151 PGTSLSENVVT---YEEQ------I----LS---R-------ELPKSIVIAGAGAIGMEFAYVLKNY------------- 194 (466)
T ss_pred CCCCCCCcEEc---hHHH------h----cc---c-------cCCCeEEEECCcHHHHHHHHHHHHc-------------
Confidence 5643 22221 1111 0 00 0 1235999999999999999999987
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc--EEEEEc-CCCeEEEEecCeEEEccCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVR-GNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~--v~~~~~-~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+|+++++.+++++.+++++...+++.|++.||+++++++|+++++++ +.+... .+|+..++++|.|++|+| .
T Consensus 195 -G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G--~ 271 (466)
T PRK07818 195 -GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG--F 271 (466)
T ss_pred -CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcC--c
Confidence 6899999999999999999999999999999999999999999997532 333221 356544699999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
.|++..+ ++..|+ +.+|+|.||+++|| +.|+|||+|||+..++ ....+..++.
T Consensus 272 ~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~-l~~~A~~~g~ 327 (466)
T PRK07818 272 APRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQ-LAHVAEAQGV 327 (466)
T ss_pred ccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcc-cHhHHHHHHH
Confidence 8888544 677777 56788999999998 9999999999997533 2333444443
No 35
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=8.3e-34 Score=273.88 Aligned_cols=274 Identities=23% Similarity=0.419 Sum_probs=230.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCC--cEEEEcCCCCcccC-CCccccccCcccccccccchHHHHhhCCCeEEEEEe
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSY--DVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~ 132 (485)
...+.++|||+|++|..|+.+++..+. +++++-++.++.+- +.++....- ....+..+..++++++++++ +.++
T Consensus 72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~-~~~t 148 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIEL-ILGT 148 (478)
T ss_pred cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceE-EEcc
Confidence 346799999999999999999996664 68888878777764 333332211 11244445667899999998 6899
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcC
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (485)
.|+.+|...+++.+.+|. .+.|++|+||||+.++++++||.+ +++..+++++++..+...+.
T Consensus 149 ~v~~~D~~~K~l~~~~Ge----------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~------- 211 (478)
T KOG1336|consen 149 SVVKADLASKTLVLGNGE----------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ------- 211 (478)
T ss_pred eeEEeeccccEEEeCCCc----------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-------
Confidence 999999999999998876 999999999999999999999998 88899999999988877652
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-cccHHHHHHHHHHHHh
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSR 290 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~ 290 (485)
.+.+|+|+|+|.+|+|+|..|... ..+||+|++.+..++ -+.+.+.+.+++++++
T Consensus 212 ----------~~~~vV~vG~G~ig~Evaa~l~~~--------------~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 212 ----------LGGKVVCVGGGFIGMEVAAALVSK--------------AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN 267 (478)
T ss_pred ----------cCceEEEECchHHHHHHHHHHHhc--------------CceEEEEccCccchhhhhhHHHHHHHHHHHHh
Confidence 356899999999999999999985 689999999999988 4788999999999999
Q ss_pred CCcEEEcCceEEEEeCC---cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHH-hCCCCCCceeeCCCccccCCC
Q 011476 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWLRVEGSD 366 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~g~~~~g~i~vd~~l~t~~~~ 366 (485)
+||++++++.+.+++.+ ++.-+.+.+|++ ++||+|++.+| ..|++ .+++. ..++.+|+|.||+++|| ++|
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~--l~adlvv~GiG--~~p~t-~~~~~g~~~~~~G~i~V~~~f~t-~~~ 341 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT--LEADLVVVGIG--IKPNT-SFLEKGILLDSKGGIKVDEFFQT-SVP 341 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCE--eccCeEEEeec--ccccc-ccccccceecccCCEeehhceee-ccC
Confidence 99999999999999753 466666678887 99999999999 68999 55554 23388999999999998 899
Q ss_pred CeEEeccccCCCC
Q 011476 367 SIYALGDCATVNQ 379 (485)
Q Consensus 367 ~Vya~GD~~~~~~ 379 (485)
||||+|||++.+.
T Consensus 342 ~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 342 NVYAIGDVATFPL 354 (478)
T ss_pred Ccccccceeeccc
Confidence 9999999998755
No 36
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=290.14 Aligned_cols=270 Identities=23% Similarity=0.309 Sum_probs=200.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcc-----------------------------c
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTV-----------------------------E 108 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~-----------------------------~ 108 (485)
+++|+|||+|++|+.||..+++.|.+|+|||+.. ++++++.....+.+. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3689999999999999999999999999999874 677654333221110 0
Q ss_pred ccc-----------cccchHHHHhhCCCeEEEEEeEEEEEe--cCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 109 ARS-----------IVEPVRNIVRKKNVDICFWEAECFKID--AENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 109 ~~~-----------~~~~~~~~~~~~gv~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
... +...+++.+++++++ ++.+++..++ .+.+.+.+... +++...+.||+||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~g~~~~~~~~~~~~~v~V~~~------~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVR--VIAGRGRLIDPGLGPHRVKVTTA------DGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEEeecccCCCEEEEEeC------CCceEEEecCEEEEcCCCCC
Confidence 000 112344566777866 6778887754 34455655431 11123689999999999999
Q ss_pred CCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhC
Q 011476 176 NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (485)
Q Consensus 176 ~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~ 254 (485)
+.|++++.+ +.++...+.. . .. ..+++++|||||++|+|+|..|+++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~---~----------~~----------~~~~~vvVIGgG~ig~E~A~~l~~~--------- 199 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLY---D----------LD----------ELPEHLIVVGSGVTGAEFASAYTEL--------- 199 (466)
T ss_pred CCCCCCCCCCceEEeehhhh---c----------cc----------ccCCeEEEECCCHHHHHHHHHHHHc---------
Confidence 877665543 2333222111 1 00 1225999999999999999999886
Q ss_pred cCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccC
Q 011476 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 255 p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
+.+||++++.+++++.+++++...+.+.|++.||++++++++.+++ ++++.+.. .+|++ +++|.|++++|
T Consensus 200 -----g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--l~~D~vl~a~G 271 (466)
T PRK07845 200 -----GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTL-TDGRT--VEGSHALMAVG 271 (466)
T ss_pred -----CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEE-CCCcE--EEecEEEEeec
Confidence 6899999999999999999999999999999999999999999996 34455443 45664 99999999999
Q ss_pred CCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCC
Q 011476 333 IAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 333 ~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
..|++..+ ++++|+ +.+|+|.||+++|| +.|||||+|||+..++
T Consensus 272 --~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~ 318 (466)
T PRK07845 272 --SVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVLP 318 (466)
T ss_pred --CCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCcc
Confidence 78888543 577777 56789999999998 9999999999997644
No 37
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.6e-34 Score=290.29 Aligned_cols=292 Identities=18% Similarity=0.167 Sum_probs=199.3
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
...+.++|+||||||||++||.+|++.|++|+|+|+.+.+++... ..++...+..+++.....+.+++.|+++. .+..
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~-~gip~~~l~~~~~~~~~~~~~~~~gv~i~-~~~~ 213 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV-YGIPEFRLPKETVVKKEIENIKKLGVKIE-TNVV 213 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee-ecCCCccCCccHHHHHHHHHHHHcCCEEE-cCCE
Confidence 345678999999999999999999999999999999887776421 12221222233366666677888898763 3333
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcC
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (485)
+ .+.+.+.+.. ..+.||+||||||+ .|+.+++||.+ ++++...+..+...+... .
T Consensus 214 v------~~~v~~~~~~---------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~--------~ 270 (464)
T PRK12831 214 V------GKTVTIDELL---------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKA--------Y 270 (464)
T ss_pred E------CCcCCHHHHH---------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccc--------c
Confidence 3 1223322211 14679999999999 69999999986 455443322221111000 0
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcc-ccccccHHHHHHHHHHHHh
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSR 290 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~ 290 (485)
.+.. +.....+++|+|||||++|+|+|..+.++ |.+||++++++. .++....++ +.+++
T Consensus 271 ~~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~--------------Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~ 330 (464)
T PRK12831 271 KPEY-DTPIKVGKKVAVVGGGNVAMDAARTALRL--------------GAEVHIVYRRSEEELPARVEEV-----HHAKE 330 (464)
T ss_pred cccc-cCcccCCCeEEEECCcHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCCCHHHH-----HHHHH
Confidence 0000 00113567999999999999999999997 678999998764 233322222 44678
Q ss_pred CCcEEEcCceEEEEeC--C-cE---EEEEc------C---------CCeEEEEecCeEEEccCCCCCcchHHHHHH-hCC
Q 011476 291 DGIDVKLGSMVVKVTD--K-EI---FTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ 348 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~--~-~v---~~~~~------~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~g~ 348 (485)
.||++++++.++++.. + .+ .+... . +|++.+++||.||+|+| +.|++ .++.. .|+
T Consensus 331 eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG--~~p~~-~~~~~~~gl 407 (464)
T PRK12831 331 EGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG--TSPNP-LISSTTKGL 407 (464)
T ss_pred cCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC--CCCCh-hhhcccCCc
Confidence 8999999999999853 2 23 22210 0 34445699999999999 68887 55554 566
Q ss_pred --CCCCceeeCCC-ccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 349 --TNRRALATDEW-LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 349 --~~~g~i~vd~~-l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
+.+|.|.||++ ++| |.|+|||+|||+..+. .+..++.++..+|..
T Consensus 408 ~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~-~v~~Ai~~G~~AA~~ 455 (464)
T PRK12831 408 KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAA-TVILAMGAGKKAAKA 455 (464)
T ss_pred eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch-HHHHHHHHHHHHHHH
Confidence 66789999998 887 9999999999987644 477888888776653
No 38
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.6e-33 Score=287.51 Aligned_cols=277 Identities=20% Similarity=0.291 Sum_probs=198.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccccc--------------------Cc--------ccccc
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT--------VEARS 111 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~--------------------~~--------~~~~~ 111 (485)
+|+||||||||++||.+|++.|.+|+|||+.+ ++++++.....+ |. .+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999874 565533221111 11 11111
Q ss_pred cc-----------cchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCC
Q 011476 112 IV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (485)
Q Consensus 112 ~~-----------~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i 180 (485)
+. .....+++..+++ ++++++..++. +.+.+... ++ ...+.||+||||||++|+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~~--~~v~v~~~------~~-~~~~~~d~lviATGs~p~~~p~ 149 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK--VIQGKASFETD--HRVRVEYG------DK-EEVVDAEQFIIAAGSEPTELPF 149 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEccC--CEEEEeeC------CC-cEEEECCEEEEeCCCCCCCCCC
Confidence 11 1123344556755 67888888875 44444321 11 1379999999999999988888
Q ss_pred CCCCC-ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCC
Q 011476 181 PGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (485)
Q Consensus 181 ~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~ 259 (485)
+|.+. .++ +..++.. +.. .+++++|||||++|+|+|..+.++
T Consensus 150 ~~~~~~~v~---~~~~~~~-------------~~~-------~~~~vvIIGgG~iG~E~A~~l~~~-------------- 192 (458)
T PRK06912 150 APFDGKWII---NSKHAMS-------------LPS-------IPSSLLIVGGGVIGCEFASIYSRL-------------- 192 (458)
T ss_pred CCCCCCeEE---cchHHhC-------------ccc-------cCCcEEEECCCHHHHHHHHHHHHc--------------
Confidence 87642 222 1112111 111 224999999999999999999886
Q ss_pred CceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCCCCCc
Q 011476 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p 337 (485)
+.+|+++++.+++++.+++++.+.+.+.|++.||++++++++++++.+. +.+. .+|+..+++||.|++|+| ..|
T Consensus 193 g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~--~~g~~~~i~~D~vivA~G--~~p 268 (458)
T PRK06912 193 GTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFE--YEGSIQEVNAEFVLVSVG--RKP 268 (458)
T ss_pred CCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEE--ECCceEEEEeCEEEEecC--Ccc
Confidence 6899999999999999999999999999999999999999999997543 3333 245444599999999999 788
Q ss_pred chHHH-HHHhCC-CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 338 IIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 338 ~~~~l-~~~~g~-~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
++..+ ++..|+ ..+++|.||+++|| +.|||||+|||+..+.. ...+..++..
T Consensus 269 ~~~~l~l~~~gv~~~~~gi~Vd~~~~t-s~~~VyA~GD~~~~~~l-a~~A~~~g~~ 322 (458)
T PRK06912 269 RVQQLNLEKAGVQFSNKGISVNEHMQT-NVPHIYACGDVIGGIQL-AHVAFHEGTT 322 (458)
T ss_pred CCCCCCchhcCceecCCCEEeCCCeec-CCCCEEEEeecCCCccc-HHHHHHHHHH
Confidence 88544 566776 22344999999998 89999999999975432 3344444443
No 39
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=268.88 Aligned_cols=278 Identities=21% Similarity=0.261 Sum_probs=210.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCc-EEEEcCCCCcccCCC----ccccc--cCcccccccccchHHHHhhCCCeEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPL----LPSVT--CGTVEARSIVEPVRNIVRKKNVDICF 129 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~gv~v~~ 129 (485)
+.+||+|||||||||+||.++++.+.+ ++|+|.. ..++.+. ...++ .+.....++.+.+.++....+++ +
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~--~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVE--I 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeE--E
Confidence 358999999999999999999999999 5555543 3443322 11121 11122346777788888888866 5
Q ss_pred EEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCC---ccccccChhHHHHHHHHHHHH
Q 011476 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE---NCNFLKEVEDAQRIRRNVIES 206 (485)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~---~~~~~~~~~~~~~~~~~~~~~ 206 (485)
....+..++.....+.+.+.+ + .+.+++||||||+.++.|.+||..+ ...+++..+|.
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~------~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---------- 139 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDK------G---TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---------- 139 (305)
T ss_pred EEEEEEEEeecCceEEEEECC------C---eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc----------
Confidence 568888888876455555433 1 6999999999999999999987542 11222222322
Q ss_pred HhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHH
Q 011476 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286 (485)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 286 (485)
..++|+|+|||||++++|.|..|.++ +.+||+++|++.+-. .+.+.+
T Consensus 140 -------------~~~~k~v~ViGgG~sAve~Al~L~~~--------------a~~Vtlv~r~~~~ra------~~~~~~ 186 (305)
T COG0492 140 -------------FFKGKDVVVIGGGDSAVEEALYLSKI--------------AKKVTLVHRRDEFRA------EEILVE 186 (305)
T ss_pred -------------cccCCeEEEEcCCHHHHHHHHHHHHh--------------cCeEEEEecCcccCc------CHHHHH
Confidence 14667999999999999999999998 478999999998743 445566
Q ss_pred HHHhC-CcEEEcCceEEEEeCC---cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC-CCCCceeeCCCcc
Q 011476 287 KFSRD-GIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDEWLR 361 (485)
Q Consensus 287 ~l~~~-gV~v~~~~~v~~v~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-~~~g~i~vd~~l~ 361 (485)
.+++. +|++++++.++++.++ ++++.... |+..++++|.+++++| ..|++ .|++.+++ +++|+|.||+.++
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~-~~~~~~~~~gvf~~iG--~~p~~-~~~~~~~~~~~~g~I~v~~~~~ 262 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVK-GEEKELPVDGVFIAIG--HLPNT-ELLKGLGVLDENGYIVVDEEME 262 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCccceEEEEecC-CceEEEEeceEEEecC--CCCch-HHHhhccccCCCCcEEcCCCcc
Confidence 67666 8999999999999885 46666533 6667899999999999 78998 77777776 8899999999999
Q ss_pred ccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 362 VEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 362 t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
| |+|+|||+|||+..+.++++.++..+..+|.
T Consensus 263 T-svpGifAaGDv~~~~~rqi~ta~~~G~~Aa~ 294 (305)
T COG0492 263 T-SVPGIFAAGDVADKNGRQIATAAGDGAIAAL 294 (305)
T ss_pred c-CCCCEEEeEeeccCcccEEeehhhhHHHHHH
Confidence 8 9999999999999877777777777665543
No 40
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=6.8e-34 Score=295.19 Aligned_cols=279 Identities=18% Similarity=0.279 Sum_probs=202.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCc----ccccc-CcccccccccchHHHHhhCCCeEEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL----PSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~gv~v~~~ 130 (485)
...++|+||||||||++||.+|++.|++|+||++. +|+++.. ..+.. ......++...+.+.++++++++ +.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i-~~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDL-ME 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeE-Ec
Confidence 45689999999999999999999999999999853 5554321 11111 11223456677788888889886 35
Q ss_pred EeEEEEEecCCCEEEE--ecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCc----cccccChhHHHHHHHHHH
Q 011476 131 EAECFKIDAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVI 204 (485)
Q Consensus 131 ~~~v~~id~~~~~v~~--~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~----~~~~~~~~~~~~~~~~~~ 204 (485)
..+|..++...+.+.+ .++. .+.||+||+|||+.|+.+++||..+. ++......
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~g~----------~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~---------- 346 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLESGE----------VLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCD---------- 346 (515)
T ss_pred CCEEEEEEecCCeEEEEECCCC----------EEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccC----------
Confidence 6788888876544433 3332 79999999999999999999996321 11110000
Q ss_pred HHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHH
Q 011476 205 ESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284 (485)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~ 284 (485)
.....+++|+|||||++|+|+|..|+.+ +.+||++++.+.+.. ...+
T Consensus 347 -------------~~~~~~k~VvViGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~l~~------~~~l 393 (515)
T TIGR03140 347 -------------GPFFKGKDVAVIGGGNSGIEAAIDLAGI--------------VRHVTVLEFADELKA------DKVL 393 (515)
T ss_pred -------------hhhcCCCEEEEECCcHHHHHHHHHHHhc--------------CcEEEEEEeCCcCCh------hHHH
Confidence 0012457999999999999999999886 579999998876632 3445
Q ss_pred HHHHHh-CCcEEEcCceEEEEeCC--c---EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHh-CCCCCCceeeC
Q 011476 285 EEKFSR-DGIDVKLGSMVVKVTDK--E---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATD 357 (485)
Q Consensus 285 ~~~l~~-~gV~v~~~~~v~~v~~~--~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-g~~~~g~i~vd 357 (485)
.+.+++ .||++++++.++++.++ + +.+....+|+..+++||.|++|+| ..|++ .+++.. .++.+|+|.||
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G--~~Pn~-~~l~~~~~~~~~G~I~vd 470 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIG--LVPNT-EWLKDAVELNRRGEIVID 470 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeC--CcCCc-hHHhhhcccCCCCeEEEC
Confidence 677776 59999999999999764 2 333332345545699999999999 78888 555544 23667899999
Q ss_pred CCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 358 EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 358 ~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+++|| +.|+|||+|||+..+...+..++.++..+|.
T Consensus 471 ~~~~T-s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~ 506 (515)
T TIGR03140 471 ERGRT-SVPGIFAAGDVTTVPYKQIIIAMGEGAKAAL 506 (515)
T ss_pred CCCCC-CCCCEEEcccccCCccceEEEEEccHHHHHH
Confidence 99998 9999999999998766555556656555443
No 41
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=4.8e-33 Score=286.69 Aligned_cols=281 Identities=21% Similarity=0.307 Sum_probs=202.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC-------------------cc-------ccccc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG-------------------TV-------EARSI 112 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~-------------------~~-------~~~~~ 112 (485)
+||+||||||||++||.+|++.|.+|+|||+ +.+|+++......+. .+ +...+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999998 677775432211100 00 00001
Q ss_pred c-----------cchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 011476 113 V-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (485)
Q Consensus 113 ~-----------~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~ 181 (485)
. ..+..++++.+++ ++.+++..+++ +.+.+.+.. + ...+.||+||||||++|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~--~~~~v~~~~-----g--~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVT--VIKGEAKFLDP--GTVLVTGEN-----G--EETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEccC--CEEEEecCC-----C--cEEEEeCEEEEcCCCCCCCCCCC
Confidence 0 1122344556755 56777777765 445444321 1 13799999999999999988876
Q ss_pred -CCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCC
Q 011476 182 -GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (485)
Q Consensus 182 -G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g 260 (485)
+.+ .. .+.+..+...+ . ..+++++|||||++|+|+|..+.++ +
T Consensus 150 ~~~~-~~-~~~~~~~~~~~-------------~-------~~~~~vvViGgG~~g~e~A~~l~~~--------------g 193 (461)
T TIGR01350 150 FDFD-GE-VVITSTGALNL-------------K-------EVPESLVIIGGGVIGIEFASIFASL--------------G 193 (461)
T ss_pred CCCC-Cc-eEEcchHHhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 432 11 22233332211 1 1235999999999999999999886 6
Q ss_pred ceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcc
Q 011476 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (485)
Q Consensus 261 ~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (485)
.+|+++++.+++++.+++++...+.+.+++.||++++++.+.+++. +.+.+.. .+|+..++++|.|++|+| ..|+
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~i~~D~vi~a~G--~~p~ 270 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGETETLTGEKVLVAVG--RKPN 270 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCcEEEEEeCEEEEecC--Cccc
Confidence 8999999999999999999999999999999999999999999864 4455443 356434599999999999 6888
Q ss_pred hHH-HHHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 339 IKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 339 ~~~-l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
+.. +++.+++ +.+|.|.||+++|| +.|+|||+|||+..+.. ...+..++..+
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~-~~~A~~~g~~a 325 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML-AHVASHEGIVA 325 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCccc-HHHHHHHHHHH
Confidence 843 4677777 66789999999998 89999999999976442 44444444443
No 42
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-33 Score=284.84 Aligned_cols=275 Identities=23% Similarity=0.415 Sum_probs=243.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCC---CCCcEEEEcCCCCcccC-CCccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~---~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
+.++||||.|+||..+...+.. .-++||++-.+++..|. .++..+..+..+.+++.-.-..++.++++.+ +....
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L-~~~~~ 81 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITL-YTGEK 81 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEE-EcCCe
Confidence 4689999999999999988774 67899999999998885 6778888887777788878889999999887 47889
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
|+.||+.++.|+.+.|. .+.||+||+||||.|+.+++||.+ ..++.+++++|...+...-
T Consensus 82 v~~idr~~k~V~t~~g~----------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a--------- 142 (793)
T COG1251 82 VIQIDRANKVVTTDAGR----------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA--------- 142 (793)
T ss_pred eEEeccCcceEEccCCc----------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH---------
Confidence 99999999999988776 999999999999999999999997 7899999999988876652
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-cccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-~~~~~~~~~~~~~l~~~ 291 (485)
+..++.+|||||..|+|+|..|.+. |.++++++..+.+|. ++|+.....+++.+++.
T Consensus 143 --------r~~~~avVIGGGLLGlEaA~~L~~~--------------Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~ 200 (793)
T COG1251 143 --------RNKKKAVVIGGGLLGLEAARGLKDL--------------GMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDL 200 (793)
T ss_pred --------hccCCcEEEccchhhhHHHHHHHhC--------------CCceEEEeecchHHHHhhhhHHHHHHHHHHHhh
Confidence 3556789999999999999999997 799999999999875 68999999999999999
Q ss_pred CcEEEcCceEEEEeC-CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEE
Q 011476 292 GIDVKLGSMVVKVTD-KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (485)
Q Consensus 292 gV~v~~~~~v~~v~~-~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya 370 (485)
|++++++....++.+ +.+.....+||+. +++|+|+||+| .+||+ .|....|+.-+.+|.||+++|| |.|+|||
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~--i~ad~VV~a~G--IrPn~-ela~~aGlavnrGIvvnd~mqT-sdpdIYA 274 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTE--IPADLVVMAVG--IRPND-ELAKEAGLAVNRGIVVNDYMQT-SDPDIYA 274 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCc--ccceeEEEecc--ccccc-HhHHhcCcCcCCCeeecccccc-cCCCeee
Confidence 999999999888865 4466666688987 99999999999 58999 8999999976679999999998 9999999
Q ss_pred eccccCCCCc
Q 011476 371 LGDCATVNQR 380 (485)
Q Consensus 371 ~GD~~~~~~~ 380 (485)
+|+|+.+...
T Consensus 275 vGEcae~~g~ 284 (793)
T COG1251 275 VGECAEHRGK 284 (793)
T ss_pred hhhHHHhcCc
Confidence 9999987554
No 43
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.6e-33 Score=285.70 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=201.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccccc--------------------Cc------cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT------VEAR 110 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~--------------------~~------~~~~ 110 (485)
.++||+|||+||||+++|..|++.|.+|+|||+.+.+|++++..+..+ +. .+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 468999999999999999999999999999999877887653322110 10 0000
Q ss_pred ccc-------c-----chHHHHhhC-CCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 111 SIV-------E-----PVRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 111 ~~~-------~-----~~~~~~~~~-gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
.+. . .+...++.. +++ ++.+.+..++. +.+.+... +++..++.||+||||||++|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~G~a~f~~~--~~v~v~~~------~g~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALT--LLKGYARFKDG--NTLVVRLH------DGGERVLAADRCLIATGSTPTI 164 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeE--EEEEEEEEecC--CEEEEEeC------CCceEEEEeCEEEEecCCCCCC
Confidence 110 0 122333333 544 67788877765 44444321 1122479999999999999999
Q ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCC
Q 011476 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (485)
Q Consensus 178 ~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~ 257 (485)
|++||.+... .+.. .+. + ... ..+++++|||+|++|+|+|..+.++
T Consensus 165 p~i~G~~~~~-~~~~-~~~--l--------~~~----------~~~k~vvVIGgG~iG~E~A~~l~~~------------ 210 (479)
T PRK14727 165 PPIPGLMDTP-YWTS-TEA--L--------FSD----------ELPASLTVIGSSVVAAEIAQAYARL------------ 210 (479)
T ss_pred CCCCCcCccc-eecc-hHH--h--------ccc----------cCCCeEEEECCCHHHHHHHHHHHHc------------
Confidence 9999975321 1111 111 1 000 1235999999999999999999987
Q ss_pred CCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 258 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+|+++++. .+++.+++++.+.+++.|++.||++++++++++++. +.+.+.. .+++ +++|.|++|+| +
T Consensus 211 --G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~-~~g~---i~aD~VlvA~G--~ 281 (479)
T PRK14727 211 --GSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTT-GHGE---LRAEKLLISTG--R 281 (479)
T ss_pred --CCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEE-cCCe---EEeCEEEEccC--C
Confidence 6899999884 677888999999999999999999999999999863 3344433 3443 89999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
.|++..| ++.+|+ +.+|+|.||+++|| +.|+|||+|||+..+.. ...++.++..+
T Consensus 282 ~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~-~~~A~~~G~~a 339 (479)
T PRK14727 282 HANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQF-VYVAAAAGSRA 339 (479)
T ss_pred CCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchh-hhHHHHHHHHH
Confidence 8888544 567777 56789999999998 99999999999986553 33444444443
No 44
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.1e-33 Score=288.79 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=196.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
..+.++|+||||||||+++|..|++.|++|+|||+.+.+++... ..+..... +.++.....+.+.+.|++++ ....
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~-~gip~~~~-~~~~~~~~~~~l~~~gv~~~--~~~~ 205 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT-YGIPEFRL-PKEIVVTEIKTLKKLGVTFR--MNFL 205 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee-ecCCCccC-CHHHHHHHHHHHHhCCcEEE--eCCc
Confidence 34578999999999999999999999999999999887766421 11211122 23455555667778887753 3322
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
. ++.+.+.+. ...||+||||||+ .|+.+++||.+ .+++...+..+...+ .....+
T Consensus 206 v-----~~~v~~~~~-----------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~-------~~~~~~ 262 (449)
T TIGR01316 206 V-----GKTATLEEL-----------FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANL-------MKAYEF 262 (449)
T ss_pred c-----CCcCCHHHH-----------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhh-------cccccc
Confidence 2 223333221 3469999999998 68999999975 344432222111110 000001
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~ 291 (485)
+... .....+++|+|||||++|+|+|..+.++ |.+||+++++++. ++. .....+.+++.
T Consensus 263 ~~~~-~~~~~gk~VvVIGgG~~a~d~A~~l~~~--------------G~~Vtlv~~~~~~~~~~-----~~~~~~~l~~~ 322 (449)
T TIGR01316 263 PHAD-TPVYAGKSVVVIGGGNTAVDSARTALRL--------------GAEVHCLYRRTREDMTA-----RVEEIAHAEEE 322 (449)
T ss_pred cccC-CcccCCCeEEEECCCHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCC-----CHHHHHHHHhC
Confidence 1000 0113567999999999999999999987 6789999998652 222 12234668889
Q ss_pred CcEEEcCceEEEEeC---CcE---EEEEc------CC---------CeEEEEecCeEEEccCCCCCcchHHHHHHhCC--
Q 011476 292 GIDVKLGSMVVKVTD---KEI---FTKVR------GN---------GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (485)
Q Consensus 292 gV~v~~~~~v~~v~~---~~v---~~~~~------~~---------G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-- 348 (485)
||++++++.++++.. +.+ .+... .+ |+..++++|.||+|+| +.|++ .+++.+++
T Consensus 323 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG--~~p~~-~~l~~~gl~~ 399 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG--NGSNP-IMAETTRLKT 399 (449)
T ss_pred CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC--CCCCc-hhhhccCccc
Confidence 999999999999863 223 22210 12 3344699999999999 67887 67777776
Q ss_pred CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 349 TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 349 ~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
+.+|.|.||++++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 400 ~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~-~v~~Ai~~G~~AA~~ 444 (449)
T TIGR01316 400 SERGTIVVDEDQRT-SIPGVFAGGDIILGAA-TVIRAMGQGKRAAKS 444 (449)
T ss_pred CCCCeEEeCCCCcc-CCCCEEEecCCCCCcH-HHHHHHHHHHHHHHH
Confidence 56789999999998 9999999999997543 467778887766643
No 45
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=1.4e-32 Score=280.81 Aligned_cols=261 Identities=22% Similarity=0.298 Sum_probs=194.1
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccccc--------------------Cc------cccccc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT------VEARSI 112 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~--------------------~~------~~~~~~ 112 (485)
+|++||||||+|.+||..+ .|.+|+|||++ .+|++++..+..+ |. .+..++
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 7999999999999999774 59999999975 5677654332211 11 111111
Q ss_pred cc-------c-----hHHH-HhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 113 VE-------P-----VRNI-VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 113 ~~-------~-----~~~~-~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
.+ . .... ++..|++ ++.+++..++ .++|.+.++. .+.||+||||||++|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~a~~~~--~~~V~v~~g~----------~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNID--VYRGHARFIG--PKTLRTGDGE----------EITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcE--EEEEEEEEec--CCEEEECCCC----------EEEeCEEEEcCCCCCCCCC
Confidence 11 1 1122 4556655 6778787774 5778876543 7999999999999999999
Q ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCC
Q 011476 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (485)
Q Consensus 180 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~ 259 (485)
+||.+.. .+.+.++...+. ..+++++|||||++|+|+|..+.++
T Consensus 145 i~g~~~~--~~~~~~~~~~l~--------------------~~~~~vvIIGgG~iG~E~A~~l~~~-------------- 188 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMRLP--------------------ELPESLVIVGGGFIAAEFAHVFSAL-------------- 188 (451)
T ss_pred CCCcCCc--cEEchHHHhhhh--------------------hcCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 9996421 233333332221 1235999999999999999999986
Q ss_pred CceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCc
Q 011476 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p 337 (485)
|.+|+++++.+++++.+++++...+.+.+ +.||++++++++++++.+ ++.+.. .+|+. ++||.|++|+| ..|
T Consensus 189 G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G--~~p 262 (451)
T PRK07846 189 GVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL-DDGST--VEADVLLVATG--RVP 262 (451)
T ss_pred CCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE-CCCcE--eecCEEEEEEC--Ccc
Confidence 68999999999999999999988887655 568999999999999743 444443 45664 99999999999 788
Q ss_pred chHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCC
Q 011476 338 IIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 338 ~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
+++.+ ++.+++ +.+|+|.||+++|| +.|||||+|||+..++
T Consensus 263 n~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~ 306 (451)
T PRK07846 263 NGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQ 306 (451)
T ss_pred CccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCcc
Confidence 88544 467777 57889999999997 9999999999998644
No 46
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=7.7e-33 Score=287.68 Aligned_cols=279 Identities=20% Similarity=0.284 Sum_probs=205.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCC----cccccc-CcccccccccchHHHHhhCCCeEEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LPSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~gv~v~~~ 130 (485)
...++|+||||||||++||.+|++.|++|+||++. +|+... ++.+.. ......++...+.+.++++++++ +.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i-~~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDI-MN 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEE-Ec
Confidence 44689999999999999999999999999999864 555321 111111 11233467777888899999886 35
Q ss_pred EeEEEEEecCCCEE--EEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCc----cccccChhHHHHHHHHHH
Q 011476 131 EAECFKIDAENKKV--YCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEEN----CNFLKEVEDAQRIRRNVI 204 (485)
Q Consensus 131 ~~~v~~id~~~~~v--~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~----~~~~~~~~~~~~~~~~~~ 204 (485)
..+|..++.....+ .+.++. .+.||+||+|||+.++.+++||.++. ++..... +
T Consensus 286 ~~~V~~I~~~~~~~~V~~~~g~----------~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~-~--------- 345 (517)
T PRK15317 286 LQRASKLEPAAGLIEVELANGA----------VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC-D--------- 345 (517)
T ss_pred CCEEEEEEecCCeEEEEECCCC----------EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc-C---------
Confidence 67899998864443 333332 79999999999999999999986421 1111000 0
Q ss_pred HHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHH
Q 011476 205 ESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284 (485)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~ 284 (485)
....++++|+|||||++|+|+|..|..+ +.+|+++++++.+.. ...+
T Consensus 346 -------------~~~~~gk~VvVVGgG~~g~e~A~~L~~~--------------~~~Vtlv~~~~~l~~------~~~l 392 (517)
T PRK15317 346 -------------GPLFKGKRVAVIGGGNSGVEAAIDLAGI--------------VKHVTVLEFAPELKA------DQVL 392 (517)
T ss_pred -------------chhcCCCEEEEECCCHHHHHHHHHHHhc--------------CCEEEEEEECccccc------cHHH
Confidence 0013567999999999999999999986 589999999876532 2345
Q ss_pred HHHHHh-CCcEEEcCceEEEEeCC--c---EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHh-CCCCCCceeeC
Q 011476 285 EEKFSR-DGIDVKLGSMVVKVTDK--E---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATD 357 (485)
Q Consensus 285 ~~~l~~-~gV~v~~~~~v~~v~~~--~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-g~~~~g~i~vd 357 (485)
.+.+.+ .||++++++.++++.++ . +.+....+|++.+++||.|++++| ..|++ .+++.. .++.+|+|.||
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G--~~p~~-~~l~~~v~~~~~g~i~vd 469 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIG--LVPNT-EWLKGTVELNRRGEIIVD 469 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeEC--CccCc-hHHhhheeeCCCCcEEEC
Confidence 566665 69999999999999765 2 333333456656799999999999 68888 555554 23677999999
Q ss_pred CCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 358 EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 358 ~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+++|| ++|+|||+|||+..+..++..++.++..+|.
T Consensus 470 ~~l~T-s~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~ 505 (517)
T PRK15317 470 ARGAT-SVPGVFAAGDCTTVPYKQIIIAMGEGAKAAL 505 (517)
T ss_pred cCCCC-CCCCEEECccccCCCCCEEEEhhhhHHHHHH
Confidence 99997 9999999999998876667777777665553
No 47
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1e-32 Score=284.07 Aligned_cols=275 Identities=23% Similarity=0.307 Sum_probs=196.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccc--------------------c------Ccccccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT--------------------C------GTVEARS 111 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~--------------------~------~~~~~~~ 111 (485)
.+|||||||||||++||.+|++.|.+|+|||+ +.+|+++...... . ...+..+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 48999999999999999999999999999998 5677754321110 0 0111122
Q ss_pred cccch------------HHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 112 IVEPV------------RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 112 ~~~~~------------~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+.. ...++..+++ ++.+++..++. +.+.+ ++ ..+.||+||||||+. .|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~--~~v~v-~~----------~~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKID--KIKGTARFVDP--NTVEV-NG----------ERIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCE--EEEEEEEEccC--CEEEE-Cc----------EEEEeCEEEEeCCCC--CCC
Confidence 22221 2223445654 56777776655 44554 22 279999999999999 556
Q ss_pred CCCCCC-ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCC
Q 011476 180 TPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (485)
Q Consensus 180 i~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~ 258 (485)
+||... ....+.+..+...+ . ..+++++|||+|++|+|+|..|.++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~-------------~-------~~~k~v~VIGgG~~g~E~A~~l~~~------------- 191 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL-------------D-------KLPKSLAVIGGGVIGLELGQALSRL------------- 191 (460)
T ss_pred CCCCcccCCCcEECchHHhCc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 677531 01111122222111 1 1336999999999999999999987
Q ss_pred CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---cEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 259 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~---~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+|+++++.+++++.+++++...+++.|++. |++++++.+++++.+ .+++.. .+|+..++++|.|++|+| .
T Consensus 192 -g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~-~~~~~~~i~~D~vi~a~G--~ 266 (460)
T PRK06292 192 -GVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE-KGGKTETIEADYVLVATG--R 266 (460)
T ss_pred -CCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE-cCCceEEEEeCEEEEccC--C
Confidence 68999999999999999999999999999999 999999999999743 244432 345545699999999999 7
Q ss_pred CcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 336 ~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
.|++..| ++.+|+ +.+|.|.||+++|| +.|+|||+|||+..++. ...+..++.
T Consensus 267 ~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~-~~~A~~qg~ 322 (460)
T PRK06292 267 RPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPL-LHEAADEGR 322 (460)
T ss_pred ccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccc-hhHHHHHHH
Confidence 8888543 577777 56789999999998 99999999999976442 334444443
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=9.3e-33 Score=288.70 Aligned_cols=280 Identities=20% Similarity=0.242 Sum_probs=196.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcc----cccc-CcccccccccchHHHHhhCCCeEEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP----SVTC-GTVEARSIVEPVRNIVRKKNVDICFWE 131 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~gv~v~~~~ 131 (485)
..+||+||||||||++||.+|++.|++|+|||+. .+++..... .++. ......++...+++.+++++++ +..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~--~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVK--FLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCE--Eec
Confidence 3589999999999999999999999999999986 455532111 1111 1122335666777788888876 567
Q ss_pred eEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCC----ccccccChhHHHHHHHHHHHHH
Q 011476 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE----NCNFLKEVEDAQRIRRNVIESF 207 (485)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~----~~~~~~~~~~~~~~~~~~~~~~ 207 (485)
++|..++.+++...+.... + .+.|++||||||++|+.|++||.+. .++.+....
T Consensus 80 ~~V~~i~~~~~~~~V~~~~------g---~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~------------- 137 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTAR------G---DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCD------------- 137 (555)
T ss_pred cEEEEEEecCCEEEEEecC------C---EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecC-------------
Confidence 8899998866544443321 1 6889999999999999999999642 111111100
Q ss_pred hhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHH
Q 011476 208 EKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287 (485)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 287 (485)
.....+++++|||||++|+|+|..|.++ +.+|+++++.+.+.. ... ...+.
T Consensus 138 ----------~~~~~g~~VvVIGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~~~~--~~~---~~~~~ 188 (555)
T TIGR03143 138 ----------GEFFTGMDVFVIGGGFAAAEEAVFLTRY--------------ASKVTVIVREPDFTC--AKL---IAEKV 188 (555)
T ss_pred ----------hhhcCCCEEEEECCCHHHHHHHHHHHcc--------------CCEEEEEEeCCcccc--CHH---HHHHH
Confidence 0113567999999999999999999876 689999999886532 222 22334
Q ss_pred HHhCCcEEEcCceEEEEeCCc-EE---EEEcCCCeEEEE--ecCe----EEEccCCCCCcchHHHHHH-hCCCCCCceee
Q 011476 288 FSRDGIDVKLGSMVVKVTDKE-IF---TKVRGNGETSSM--PYGM----VVWSTGIAPHAIIKDFMKQ-VGQTNRRALAT 356 (485)
Q Consensus 288 l~~~gV~v~~~~~v~~v~~~~-v~---~~~~~~G~~~~i--~~D~----vi~a~G~~~~p~~~~l~~~-~g~~~~g~i~v 356 (485)
++..||++++++.|+++.++. +. +....+|+..++ +||. |+|++| ..|++ .|++. +.++.+|+|.|
T Consensus 189 ~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G--~~Pn~-~l~~~~l~l~~~G~I~v 265 (555)
T TIGR03143 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVG--YAPSS-ELFKGVVELDKRGYIPT 265 (555)
T ss_pred HhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeC--CCCCh-hHHhhhcccCCCCeEEe
Confidence 455799999999999997643 32 233345765443 4776 999999 68888 55543 23366799999
Q ss_pred CCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 357 DEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 357 d~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
|++++| +.|+|||+|||+......+..++.++..+|.
T Consensus 266 d~~~~T-s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~ 302 (555)
T TIGR03143 266 NEDMET-NVPGVYAAGDLRPKELRQVVTAVADGAIAAT 302 (555)
T ss_pred CCcccc-CCCCEEEceeccCCCcchheeHHhhHHHHHH
Confidence 999998 9999999999986444445556666555444
No 49
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.6e-32 Score=279.31 Aligned_cols=277 Identities=20% Similarity=0.248 Sum_probs=194.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC--------CcccCCCcccccc---------------------C---
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTC---------------------G--- 105 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~~~~~~~~~---------------------~--- 105 (485)
.+||+||||||||++||.+|++.|.+|+|||+.. .+|++++.....+ +
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 3676542211111 1
Q ss_pred --cccccccccchHHH-----------HhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccC
Q 011476 106 --TVEARSIVEPVRNI-----------VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (485)
Q Consensus 106 --~~~~~~~~~~~~~~-----------~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG 172 (485)
..+..++.+...+. ++..+++ ++++++...+. ++|.+.+.. +...+.||+||||||
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~i~g~a~~~~~--~~v~v~~~~-------~~~~i~~d~lIIATG 153 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVE--YINGLAKLKDE--HTVSYGDNS-------QEETITAKYILIATG 153 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcE--EEEEEEEEccC--CEEEEeeCC-------CceEEECCEEEEecC
Confidence 11222222222222 2234544 56777766543 566664321 123799999999999
Q ss_pred CCCCCC-CCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHH
Q 011476 173 ARANTF-NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (485)
Q Consensus 173 ~~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~ 251 (485)
+.|+.| ++||.++.+. +..+.. .. . ..+++++|||||++|+|+|..|.++
T Consensus 154 s~p~~p~~i~G~~~~~~---~~~~~~----------~~---~-------~~~~~vvIIGgG~iG~E~A~~l~~~------ 204 (499)
T PTZ00052 154 GRPSIPEDVPGAKEYSI---TSDDIF----------SL---S-------KDPGKTLIVGASYIGLETAGFLNEL------ 204 (499)
T ss_pred CCCCCCCCCCCccceee---cHHHHh----------hh---h-------cCCCeEEEECCCHHHHHHHHHHHHc------
Confidence 999988 4998754322 112211 11 1 1234999999999999999999987
Q ss_pred hhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEE
Q 011476 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVW 329 (485)
Q Consensus 252 ~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~ 329 (485)
|.+||++++ +.+++.+++++.+.+++.|++.||++++++.+.+++. +.+.+.. .+|++ +++|.|+|
T Consensus 205 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--i~~D~vl~ 272 (499)
T PTZ00052 205 --------GFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLF-SDGTT--ELFDTVLY 272 (499)
T ss_pred --------CCcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEcCEEEE
Confidence 689999987 4677889999999999999999999999999988864 2344433 45765 89999999
Q ss_pred ccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHH
Q 011476 330 STGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIF 390 (485)
Q Consensus 330 a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~ 390 (485)
|+| ..||+..| ++.+++ +.+|.+.+++. +| +.|+|||+|||+.........+..++.
T Consensus 273 a~G--~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~~~~l~~~A~~~g~ 332 (499)
T PTZ00052 273 ATG--RKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEGRPELTPVAIKAGI 332 (499)
T ss_pred eeC--CCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCCCcccHHHHHHHHH
Confidence 999 78998544 467776 56788777766 87 999999999999643333344444443
No 50
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=1.1e-32 Score=300.03 Aligned_cols=290 Identities=14% Similarity=0.146 Sum_probs=200.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+|||||||||+||.+|++.||+|||||+.+.+|+.. ...+ +....++++++...+.++..|++++ .+..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l-~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~-~n~~v- 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL-RYGI-PEFRLPNQLIDDVVEKIKLLGGRFV-KNFVV- 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE-EccC-CCCcChHHHHHHHHHHHHhhcCeEE-EeEEe-
Confidence 457999999999999999999999999999999998888742 2222 2223345677777788888998753 23222
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC-
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL- 212 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (485)
++.+++++.. ...||+||||||+. |+.+++||.+ +++++..+......+... .. ...
T Consensus 380 -----G~dit~~~l~----------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~----~~-~~~~ 439 (944)
T PRK12779 380 -----GKTATLEDLK----------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRG----LD-DDYE 439 (944)
T ss_pred -----ccEEeHHHhc----------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhcc----cc-cccc
Confidence 2345554432 56799999999994 8999999976 455433222221111100 00 000
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcc-ccccccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~ 291 (485)
...+ ...+++|+|||||++|+|+|..+.++ |.+|+++++++. .+|....+ + +...+.
T Consensus 440 ~~~~---~~~Gk~VvVIGGG~tA~D~A~ta~R~--------------Ga~Vtlv~rr~~~~mpa~~~e----~-~~a~ee 497 (944)
T PRK12779 440 TPLP---EVKGKEVFVIGGGNTAMDAARTAKRL--------------GGNVTIVYRRTKSEMPARVEE----L-HHALEE 497 (944)
T ss_pred cccc---ccCCCEEEEECCCHHHHHHHHHHHHc--------------CCEEEEEEecCcccccccHHH----H-HHHHHC
Confidence 0000 13578999999999999999999997 678999998864 34432222 2 224567
Q ss_pred CcEEEcCceEEEEeCC----cEE---EEE--------------cCCCeEEEEecCeEEEccCCCCCcchHHHH-HHhCC-
Q 011476 292 GIDVKLGSMVVKVTDK----EIF---TKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFM-KQVGQ- 348 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~----~v~---~~~--------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~-~~~g~- 348 (485)
||++++++.++++..+ .+. +.. ..+|++.+++||.||+|+| +.|+. .+. ...++
T Consensus 498 GV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG--~~p~~-~l~~~~~gle 574 (944)
T PRK12779 498 GINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALG--NTANP-IMKDAEPGLK 574 (944)
T ss_pred CCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCC--cCCCh-hhhhcccCce
Confidence 9999999999998632 222 110 0135556799999999999 56765 332 33455
Q ss_pred -CCCCceeeCC-CccccCCCCeEEeccccCCCCcchHHHHHHHHhhcccC
Q 011476 349 -TNRRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKD 396 (485)
Q Consensus 349 -~~~g~i~vd~-~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~~ 396 (485)
+.+|.|.||+ +++| |.|+|||+|||+.++. .+..++.++..+|..+
T Consensus 575 ~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~-~vv~Ai~eGr~AA~~I 622 (944)
T PRK12779 575 TNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS-TAIRAAGDGQAAAKEI 622 (944)
T ss_pred ECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH-HHHHHHHHHHHHHHHH
Confidence 6689999997 4787 9999999999997643 5889999999887654
No 51
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.8e-32 Score=278.61 Aligned_cols=286 Identities=16% Similarity=0.268 Sum_probs=200.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcC------CCCcccCCCcccccc---------------------Cc----
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP------RNYFAFTPLLPSVTC---------------------GT---- 106 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~------~~~~~~~~~~~~~~~---------------------~~---- 106 (485)
.+|++||||||||++||.++++.|.+|+|||+ ...+++++......+ |.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 245566432211110 00
Q ss_pred --ccccccc-----------cchHHHHhhCCCeEEEEEeEEEEEecC--CCEEEEecCCccCCCCCceEEeecCEEEEcc
Q 011476 107 --VEARSIV-----------EPVRNIVRKKNVDICFWEAECFKIDAE--NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (485)
Q Consensus 107 --~~~~~~~-----------~~~~~~~~~~gv~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~~yd~lviAt 171 (485)
.+...+. ..+..+++..+++ ++.+++..++.. ..+|.+..+. + ..+.||+|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~~~~~~~~~~~~v~v~~~~------~--~~~~~d~lViAT 153 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLKGRGSFVGKTDAGYEIKVTGED------E--TVITAKHVIIAT 153 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEecCCCCCCEEEEecCC------C--eEEEeCEEEEeC
Confidence 0000011 1233445556755 678888877633 3556654321 1 279999999999
Q ss_pred CCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHH
Q 011476 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (485)
Q Consensus 172 G~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~ 251 (485)
|+.|+.++..+.+. ...+ +..+... +. ..+++++|||+|++|+|+|..+.++
T Consensus 154 Gs~p~~~p~~~~~~-~~~~-~~~~~~~-------------~~-------~~~~~vvVvGgG~~g~E~A~~l~~~------ 205 (475)
T PRK06327 154 GSEPRHLPGVPFDN-KIIL-DNTGALN-------------FT-------EVPKKLAVIGAGVIGLELGSVWRRL------ 205 (475)
T ss_pred CCCCCCCCCCCCCC-ceEE-CcHHHhc-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc------
Confidence 99997543222211 1111 1111111 11 1235999999999999999999886
Q ss_pred hhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEc-CCCeEEEEecCeEE
Q 011476 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR-GNGETSSMPYGMVV 328 (485)
Q Consensus 252 ~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~-~~G~~~~i~~D~vi 328 (485)
+.+||++++.+++++.+++++...+.+.|++.||+++++++|++++.+ .+.+... .+|++.++++|.|+
T Consensus 206 --------g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 206 --------GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred --------CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 689999999999999889999999999999999999999999999753 3443321 23554569999999
Q ss_pred EccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhc
Q 011476 329 WSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (485)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a 393 (485)
+|+| ..|++..+ ++.+++ +.+|+|.||++++| +.|+|||+|||+..+. ....+..++..+|
T Consensus 278 ~a~G--~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~~~-~~~~A~~~G~~aa 341 (475)
T PRK06327 278 VSIG--RVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRGPM-LAHKAEEEGVAVA 341 (475)
T ss_pred EccC--CccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCCcc-hHHHHHHHHHHHH
Confidence 9999 78888544 567776 67889999999998 8999999999997654 3444555554443
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=2.9e-32 Score=291.90 Aligned_cols=280 Identities=19% Similarity=0.207 Sum_probs=195.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+||||||||++||++|++.|++|+|+|+.+.+|+... . ..++...+.+......+++.+.|++++ .+..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr-~-~IP~~Rlp~evL~~die~l~~~GVe~~-~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK-N-IIPQFRIPAELIQHDIEFVKAHGVKFE-FGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee-e-ecccccccHHHHHHHHHHHHHcCCEEE-eCcee-
Confidence 5678999999999999999999999999999999988887531 1 222222233555555677788898764 33333
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (485)
.++ +... ....||+||||||+++ ..+++||.+++++. . ..+....... ..
T Consensus 613 di~-------le~L----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~s--a----ldfL~~~k~~---~~--- 663 (1019)
T PRK09853 613 DLT-------VEQL----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVIK--A----LPFLEEYKNK---GT--- 663 (1019)
T ss_pred EEE-------hhhh----------eeccCCEEEECcCCCCCCCCCCCCccCCcee--h----HHHHHHHhhh---cc---
Confidence 222 2211 1567999999999984 56688887544432 1 1111111000 00
Q ss_pred CCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCC-ceEEEEecCc-cccccccHHHHHHHHHHHHhCC
Q 011476 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g-~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~g 292 (485)
....+++|+|||||++|+|+|..+.+++ + .+|++++|++ ..++..++++ .+. .+.|
T Consensus 664 ----~~~~GKrVVVIGGGnVAmD~Ar~a~Rlg-------------GakeVTLVyRr~~~~MPA~~eEl----e~A-leeG 721 (1019)
T PRK09853 664 ----ALKLGKHVVVVGGGNTAMDAARAALRVP-------------GVEKVTVVYRRTKQEMPAWREEY----EEA-LEDG 721 (1019)
T ss_pred ----cccCCCEEEEECCChHHHHHHHHHHhcC-------------CCceEEEEEccCcccccccHHHH----HHH-HHcC
Confidence 0135679999999999999999988762 3 4899999986 3556554443 222 3579
Q ss_pred cEEEcCceEEEEeC-CcEEEEE--------------cCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCcee
Q 011476 293 IDVKLGSMVVKVTD-KEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALA 355 (485)
Q Consensus 293 V~v~~~~~v~~v~~-~~v~~~~--------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~ 355 (485)
|++++++.+.++.. +.+.... ...|+..+++||.||+|+| ..|++ .+++..|+ +.+|++.
T Consensus 722 Ve~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG--~~Pnt-elle~~GL~ld~~G~I~ 798 (1019)
T PRK09853 722 VEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIG--EQVDT-ELLKANGIPLDKKGWPV 798 (1019)
T ss_pred CEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCC--CcCCh-hHHHhcCccccCCCCEE
Confidence 99999999999973 3332210 0123445699999999999 68888 56777776 5678999
Q ss_pred eCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 356 TDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 356 vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
||++++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 799 VDetlqT-s~pgVFAaGD~a~Gp~-tvv~Ai~qGr~AA~n 836 (1019)
T PRK09853 799 VDANGET-SLTNVYMIGDVQRGPS-TIVAAIADARRAADA 836 (1019)
T ss_pred eCCCccc-CCCCEEEEeccccCch-HHHHHHHHHHHHHHH
Confidence 9999998 9999999999997654 477788887776654
No 53
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.2e-31 Score=273.40 Aligned_cols=262 Identities=24% Similarity=0.418 Sum_probs=210.0
Q ss_pred HHHHhcCC--CCCcEEEEcCCCCcccCC-CccccccCcccc-cccccc-hHHHHhhCCCeEEEEEeEEEEEecCCCEEEE
Q 011476 72 SFLKNLNN--PSYDVQVISPRNYFAFTP-LLPSVTCGTVEA-RSIVEP-VRNIVRKKNVDICFWEAECFKIDAENKKVYC 146 (485)
Q Consensus 72 ~aA~~L~~--~g~~V~lie~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~ 146 (485)
+||++|++ .+++|+|||+++++.|.| .++.+..+.... ++.... .+.++.++|+++ +.+++|+.+|++.+.+.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V~~id~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDV-KTNHEVIEVNDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeE-EecCEEEEEECCCCEEEE
Confidence 36777774 468899999999999987 477777665542 333333 455668889876 357899999999999988
Q ss_pred ecCCccCCCCCceEEee--cCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhc
Q 011476 147 RSSQNTNLNGKEEFCMD--YDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223 (485)
Q Consensus 147 ~~~~~~~~~~~~~~~~~--yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (485)
.++. +++ .+. ||+||||||++|+.|++||.+ ++++.+++..++..++..+.. ..+
T Consensus 80 ~~~~-----~~~--~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~ 137 (427)
T TIGR03385 80 RNNK-----TNE--TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKV 137 (427)
T ss_pred EECC-----CCC--EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCC
Confidence 7532 111 556 999999999999999999986 667778888888777666521 234
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhCCcEEEcCceEE
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDGIDVKLGSMVV 302 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 302 (485)
++++|||||++|+|+|..|.+. +.+|+++++.+.+ .+.+++++...+.+.|++.||++++++.++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 203 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER--------------GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD 203 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence 6999999999999999999886 6899999999987 467888999999999999999999999999
Q ss_pred EEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeCCCccccCCCCeEEeccccCC
Q 011476 303 KVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATV 377 (485)
Q Consensus 303 ~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~ 377 (485)
+++.++..+.. .+|+. ++||.|++|+| ..|++ .+++.+|+ +.+|+|.||++++| +.|+|||+|||+..
T Consensus 204 ~i~~~~~~v~~-~~g~~--i~~D~vi~a~G--~~p~~-~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~ 273 (427)
T TIGR03385 204 SIEGEERVKVF-TSGGV--YQADMVILATG--IKPNS-ELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAES 273 (427)
T ss_pred EEecCCCEEEE-cCCCE--EEeCEEEECCC--ccCCH-HHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEe
Confidence 99875543232 45665 99999999999 68888 67788887 56789999999998 89999999999974
No 54
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-31 Score=276.94 Aligned_cols=271 Identities=17% Similarity=0.253 Sum_probs=192.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC-CCcccCCCcccccc-----------------------Ccc------
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR-NYFAFTPLLPSVTC-----------------------GTV------ 107 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~-~~~~~~~~~~~~~~-----------------------~~~------ 107 (485)
.+||+|||+||+|++||..++..|.+|+|||+. +.+|++++..+..+ |..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 579999999999999999999999999999974 35777643222111 100
Q ss_pred ------------------cccccc-----------cchHHHHhhCCC-----eEEEEEeEEEEEecCCCEEEEecCCccC
Q 011476 108 ------------------EARSIV-----------EPVRNIVRKKNV-----DICFWEAECFKIDAENKKVYCRSSQNTN 153 (485)
Q Consensus 108 ------------------~~~~~~-----------~~~~~~~~~~gv-----~v~~~~~~v~~id~~~~~v~~~~~~~~~ 153 (485)
+...+. ..+...+++.++ .+.++.+....+++ ++|.+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~--~~v~v~~~---- 269 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDK--NTIKSEKS---- 269 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecC--CeEEEccC----
Confidence 100111 112233444431 13456666666654 44554311
Q ss_pred CCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCC
Q 011476 154 LNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232 (485)
Q Consensus 154 ~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG 232 (485)
+ .++.||+||||||++|+.|++++.+ ..++ +..++..+. . .+++++|||||
T Consensus 270 --g---~~i~ad~lIIATGS~P~~P~~~~~~~~~V~---ts~d~~~l~----------~----------lpk~VvIVGgG 321 (659)
T PTZ00153 270 --G---KEFKVKNIIIATGSTPNIPDNIEVDQKSVF---TSDTAVKLE----------G----------LQNYMGIVGMG 321 (659)
T ss_pred --C---EEEECCEEEEcCCCCCCCCCCCCCCCCcEE---ehHHhhhhh----------h----------cCCceEEECCC
Confidence 1 2799999999999999988776654 2233 223332221 1 12499999999
Q ss_pred hhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHH-HhCCcEEEcCceEEEEeCCc---
Q 011476 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF-SRDGIDVKLGSMVVKVTDKE--- 308 (485)
Q Consensus 233 ~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l-~~~gV~v~~~~~v~~v~~~~--- 308 (485)
++|+|+|..+.++ |.+||++++.+++++.+++++...+.+.+ ++.||++++++.|++++.+.
T Consensus 322 ~iGvE~A~~l~~~--------------G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~ 387 (659)
T PTZ00153 322 IIGLEFMDIYTAL--------------GSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQ 387 (659)
T ss_pred HHHHHHHHHHHhC--------------CCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCce
Confidence 9999999999887 68999999999999999999999998876 67899999999999997532
Q ss_pred -EEEEEcC------CC------eEEEEecCeEEEccCCCCCcchHHH-HHHhCC-CCCCceeeCCCccccC------CCC
Q 011476 309 -IFTKVRG------NG------ETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEG------SDS 367 (485)
Q Consensus 309 -v~~~~~~------~G------~~~~i~~D~vi~a~G~~~~p~~~~l-~~~~g~-~~~g~i~vd~~l~t~~------~~~ 367 (485)
+.+.... ++ +..++++|.|+||+| +.||++.| ++.+++ ..+|+|.||++||| + +|+
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~L~l~~~gi~~~~G~I~VDe~lqT-s~~~~~~v~~ 464 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNNLGLDKLKIQMKRGFVSVDEHLRV-LREDQEVYDN 464 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCccCCchhcCCcccCCEEeECCCCCc-CCCCCCCCCC
Confidence 4443211 11 112599999999999 78999655 577777 34588999999998 5 699
Q ss_pred eEEeccccCCCC
Q 011476 368 IYALGDCATVNQ 379 (485)
Q Consensus 368 Vya~GD~~~~~~ 379 (485)
|||+|||+..++
T Consensus 465 IYAiGDv~g~~~ 476 (659)
T PTZ00153 465 IFCIGDANGKQM 476 (659)
T ss_pred EEEEEecCCCcc
Confidence 999999987543
No 55
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=9.7e-31 Score=267.48 Aligned_cols=262 Identities=20% Similarity=0.291 Sum_probs=188.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC--------------------------cccccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------------TVEARS 111 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 111 (485)
.+|++|||+||+|..||..+ .|.+|+|||++ .+|++++..+..+. ..+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 48999999999999987554 59999999974 56775433221111 011111
Q ss_pred ccc--------chH----HH-H--hhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 112 IVE--------PVR----NI-V--RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 112 ~~~--------~~~----~~-~--~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
+.. .+. .. + ++.|++ ++.+....++ .++|.+.++. .+.||+||||||++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~~--~~~V~~~~g~----------~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFVG--PRTLRTGDGE----------EITGDQIVIAAGSRPY 144 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEec--CCEEEECCCc----------EEEeCEEEEEECCCCC
Confidence 111 110 11 1 225655 5666666553 4677775443 7999999999999998
Q ss_pred CCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcC
Q 011476 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (485)
Q Consensus 177 ~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~ 256 (485)
.|++++.. +. .+.+.+++.++.. .+++++|||||++|+|+|..|.++
T Consensus 145 ~p~~~~~~-~~-~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~~l~~~----------- 191 (452)
T TIGR03452 145 IPPAIADS-GV-RYHTNEDIMRLPE--------------------LPESLVIVGGGYIAAEFAHVFSAL----------- 191 (452)
T ss_pred CCCCCCCC-CC-EEEcHHHHHhhhh--------------------cCCcEEEECCCHHHHHHHHHHHhC-----------
Confidence 88654422 22 3445555443321 235999999999999999999986
Q ss_pred CCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 257 ~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
|.+|+++++.+.+++.+++++...+.+.+ +.||++++++.|++++. +++.+.. .+|+. +++|.|++|+|
T Consensus 192 ---G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G-- 262 (452)
T TIGR03452 192 ---GTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTL-DDGST--VTADVLLVATG-- 262 (452)
T ss_pred ---CCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEE-cCCCE--EEcCEEEEeec--
Confidence 68999999999998889999988887755 46899999999999974 3454443 45654 99999999999
Q ss_pred CCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCC
Q 011476 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQ 379 (485)
Q Consensus 335 ~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~ 379 (485)
..|++..+ ++.+|+ +.+|+|.||+++|| +.|+|||+|||+..+.
T Consensus 263 ~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~ 309 (452)
T TIGR03452 263 RVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQ 309 (452)
T ss_pred cCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCccc
Confidence 78888444 566776 57789999999997 9999999999998643
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.3e-31 Score=274.84 Aligned_cols=282 Identities=18% Similarity=0.198 Sum_probs=192.7
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
...+++|+||||||||+++|..|++.|++|+|+|+.+.+++.... .+ +....+.++.....+.+++.|++++ .+..+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-gi-p~~~~~~~~~~~~~~~l~~~gv~~~-~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-GI-PEFRLPKDIVDREVERLLKLGVEIR-TNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-cC-CCccCCHHHHHHHHHHHHHcCCEEE-eCCEE
Confidence 356789999999999999999999999999999999877653211 11 1111233566666777888887753 23322
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
.+.+.+.+. .+.||+||+|||+. ++.+++||.+ .+++.. ..+........ ..
T Consensus 214 ------~~~v~~~~~-----------~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~------~~~l~~~~~~~---~~ 267 (457)
T PRK11749 214 ------GRDITLDEL-----------RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSA------VDFLTRVNQAV---AD 267 (457)
T ss_pred ------CCccCHHHH-----------HhhCCEEEEccCCCCCCCCCCCCccCCCcEEH------HHHHHHHhhcc---cc
Confidence 112222111 46799999999996 7778899975 333221 11111111000 00
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCc-eEEEEecCcc-ccccccHHHHHHHHHHHHh
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSV-KITLLEAADH-ILNMFDKRITAFAEEKFSR 290 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~ 290 (485)
.. ...+++|+|||||++|+|+|..+.++ |. +|+++++++. .++..+. ..+.+++
T Consensus 268 ~~-----~~~g~~VvViGgG~~g~e~A~~l~~~--------------G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~ 323 (457)
T PRK11749 268 YD-----LPVGKRVVVIGGGNTAMDAARTAKRL--------------GAESVTIVYRRGREEMPASEE-----EVEHAKE 323 (457)
T ss_pred cc-----CCCCCeEEEECCCHHHHHHHHHHHHc--------------CCCeEEEeeecCcccCCCCHH-----HHHHHHH
Confidence 00 02467999999999999999999987 44 8999998765 3443222 3467888
Q ss_pred CCcEEEcCceEEEEeCCc-----EEEEEc--------------CCCeEEEEecCeEEEccCCCCCcchHHHHH-HhCC--
Q 011476 291 DGIDVKLGSMVVKVTDKE-----IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVGQ-- 348 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~~-----v~~~~~--------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~-~~g~-- 348 (485)
.||++++++.++++.++. +.+... .+|+..+++||.||+|+| ..|+. .|+. ..++
T Consensus 324 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G--~~p~~-~l~~~~~gl~~ 400 (457)
T PRK11749 324 EGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG--QTPNP-LILSTTPGLEL 400 (457)
T ss_pred CCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc--CCCCc-hhhccccCccC
Confidence 999999999999997543 444321 134445699999999999 67776 4543 3444
Q ss_pred CCCCceeeCC-CccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 349 TNRRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 349 ~~~g~i~vd~-~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+.+|+|.||+ +++| +.|+|||+|||+..+ ..+..++.++..+|.
T Consensus 401 ~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~-~~~~~A~~~G~~aA~ 445 (457)
T PRK11749 401 NRWGTIIADDETGRT-SLPGVFAGGDIVTGA-ATVVWAVGDGKDAAE 445 (457)
T ss_pred CCCCCEEeCCCCCcc-CCCCEEEeCCcCCCc-hHHHHHHHHHHHHHH
Confidence 6789999998 7887 999999999999643 346677777766554
No 57
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=8.2e-32 Score=250.94 Aligned_cols=272 Identities=19% Similarity=0.283 Sum_probs=211.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCc----------------------------cc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT----------------------------VE 108 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~----------------------------~~ 108 (485)
..+||+|||+||+|..||.+.++.|++.+.+|++..+|++++--...+.. ++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 57999999999999999999999999999999999999875432221110 00
Q ss_pred -----------ccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 109 -----------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 109 -----------~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
..++...+..++++.+++ ++.+....++|..-++.-.++ +.+.+.++++|||||+.-
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~--~~kG~gsf~~p~~V~v~k~dg--------~~~ii~aKnIiiATGSeV-- 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVT--YVKGFGSFLDPNKVSVKKIDG--------EDQIIKAKNIIIATGSEV-- 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeE--EEeeeEeecCCceEEEeccCC--------CceEEeeeeEEEEeCCcc--
Confidence 011222355667777755 788888888885433433332 346899999999999942
Q ss_pred CCCCCCC--C-ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhC
Q 011476 178 FNTPGVE--E-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (485)
Q Consensus 178 ~~i~G~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~ 254 (485)
+++||.. + .+.+... +. +|.+ -+++++|||+|.+|+|++....++
T Consensus 186 ~~~PGI~IDekkIVSStg---AL-------------sL~~-------vPk~~~viG~G~IGLE~gsV~~rL--------- 233 (506)
T KOG1335|consen 186 TPFPGITIDEKKIVSSTG---AL-------------SLKE-------VPKKLTVIGAGYIGLEMGSVWSRL--------- 233 (506)
T ss_pred CCCCCeEecCceEEecCC---cc-------------chhh-------CcceEEEEcCceeeeehhhHHHhc---------
Confidence 3345653 2 2221111 11 1122 224999999999999999999998
Q ss_pred cCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC---c--EEEEEcCCCeEEEEecCeEEE
Q 011476 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---E--IFTKVRGNGETSSMPYGMVVW 329 (485)
Q Consensus 255 p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~---~--v~~~~~~~G~~~~i~~D~vi~ 329 (485)
|.+||+++-.+.+.+.+|.+++..+++.|.++|++|+++++|..++.+ . +.+....+|+..+++||.+++
T Consensus 234 -----GseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 234 -----GSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred -----CCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 689999999999999999999999999999999999999999999753 2 455566778888999999999
Q ss_pred ccCCCCCcchHHH-HHHhCC--CCCCceeeCCCccccCCCCeEEeccccCCCCc
Q 011476 330 STGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVNQR 380 (485)
Q Consensus 330 a~G~~~~p~~~~l-~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~ 380 (485)
++| ++|.++.| ++++|+ +.+|.+.||..++| .+|+||++|||...|+-
T Consensus 309 siG--RrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~gpML 359 (506)
T KOG1335|consen 309 SIG--RRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLGPML 359 (506)
T ss_pred Ecc--CcccccCCChhhcccccccccceeccccccc-cCCceEEecccCCcchh
Confidence 999 89999888 888888 77899999999998 89999999999988664
No 58
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=2.5e-31 Score=286.35 Aligned_cols=281 Identities=20% Similarity=0.218 Sum_probs=194.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+||||||||++||++|++.|++|+|||+++.+|+... ..+ +....+.+.+....+.+.+.|++++. +.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~-~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~-g~--- 608 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK-NII-PEFRISAESIQKDIELVKFHGVEFKY-GC--- 608 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee-ecc-cccCCCHHHHHHHHHHHHhcCcEEEE-ec---
Confidence 4568999999999999999999999999999999988887531 111 22112234455555677778877532 21
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (485)
+ ..+.+.+.. ...||+||||||+++ ..+++||..++++ .. ..+...+.+. +
T Consensus 609 --~---~d~~ve~l~----------~~gYDaVIIATGA~~~~~l~I~G~~~~v~--~a----vefL~~~~~~------~- 660 (1012)
T TIGR03315 609 --S---PDLTVAELK----------NQGYKYVILAIGAWKHGPLRLEGGGERVL--KS----LEFLRAFKEG------P- 660 (1012)
T ss_pred --c---cceEhhhhh----------cccccEEEECCCCCCCCCCCcCCCCccee--eH----HHHHHHhhcc------c-
Confidence 1 112222211 567999999999985 5567888543332 11 1121111100 0
Q ss_pred CCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCC-ceEEEEecCc-cccccccHHHHHHHHHHHHhCC
Q 011476 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g-~~Vtlv~~~~-~~l~~~~~~~~~~~~~~l~~~g 292 (485)
.....+++|+|||||++|+|+|..+.+. +| .+|+++++++ ..++..++++. + +.+.|
T Consensus 661 ---~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl-------------~Ga~kVtLVyRr~~~~Mpa~~eEl~----~-aleeG 719 (1012)
T TIGR03315 661 ---TINPLGKHVVVVGGGNTAMDAARAALRV-------------PGVEKVTVVYRRTKRYMPASREELE----E-ALEDG 719 (1012)
T ss_pred ---cccccCCeEEEECCCHHHHHHHHHHHHh-------------CCCceEEEEEccCccccccCHHHHH----H-HHHcC
Confidence 0013567999999999999999998875 24 4899999987 34555544432 2 33579
Q ss_pred cEEEcCceEEEEeCCcEEEEE--------------cCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceee
Q 011476 293 IDVKLGSMVVKVTDKEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALAT 356 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~--------------~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~v 356 (485)
|++++++.+.+++++.+++.. ..+|+..+++||.||+|+| ..|+. .+++.+|+ +.+|+|.|
T Consensus 720 Ve~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG--~~Pnt-~lle~~GL~ld~~G~I~V 796 (1012)
T TIGR03315 720 VDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVG--EQVDT-DLLQKNGIPLDEYGWPVV 796 (1012)
T ss_pred CEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecC--CcCCh-HHHHhcCcccCCCCCEEe
Confidence 999999999998855443321 1235556799999999999 67887 56777876 67789999
Q ss_pred CCC-ccccCCCCeEEeccccCCCCcchHHHHHHHHhhcccC
Q 011476 357 DEW-LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKD 396 (485)
Q Consensus 357 d~~-l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~~ 396 (485)
|++ ++| +.|+|||+|||+..+. .+..++.++..+|..+
T Consensus 797 D~~~~~T-s~pgVFAaGD~a~GP~-tVv~AIaqGr~AA~nI 835 (1012)
T TIGR03315 797 NQATGET-NITNVFVIGDANRGPA-TIVEAIADGRKAANAI 835 (1012)
T ss_pred CCCCCcc-CCCCEEEEeCcCCCcc-HHHHHHHHHHHHHHHH
Confidence 986 887 9999999999987654 4778888888777654
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=9.5e-32 Score=290.98 Aligned_cols=289 Identities=20% Similarity=0.194 Sum_probs=195.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
..+.++|+||||||||++||.+|++.|++|+|||+.+.+++.. ...++..++ +.++.....+.+.++|++++ .+..+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~rl-p~~~~~~~~~~l~~~gv~~~-~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVL-KYGIPEFRL-PKKIVDVEIENLKKLGVKFE-TDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-eecCCCCCC-CHHHHHHHHHHHHHCCCEEE-CCCEE
Confidence 3467899999999999999999999999999999987777642 122222222 33455556677888897753 23222
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (485)
++.+++++.. ...||+||||||+ .|+.+++||.+ ++++...+......+... . .
T Consensus 505 ------~~~v~~~~l~----------~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~----~----~ 560 (752)
T PRK12778 505 ------GKTITIEELE----------EEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDA----A----S 560 (752)
T ss_pred ------CCcCCHHHHh----------hcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhccc----c----c
Confidence 2334333321 5679999999999 58999999976 444433222111111000 0 0
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCce-EEEEecCcc-ccccccHHHHHHHHHHHHh
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADH-ILNMFDKRITAFAEEKFSR 290 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~-Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~ 290 (485)
+. .+.....+++|+|||||++|+|+|..+.++ |.+ ||++++++. .++....++ +.+++
T Consensus 561 ~~-~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~--------------Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~ 620 (752)
T PRK12778 561 PD-SDTPIKFGKKVAVVGGGNTAMDSARTAKRL--------------GAERVTIVYRRSEEEMPARLEEV-----KHAKE 620 (752)
T ss_pred cc-ccCcccCCCcEEEECCcHHHHHHHHHHHHc--------------CCCeEEEeeecCcccCCCCHHHH-----HHHHH
Confidence 00 000013578999999999999999999987 455 999998764 234322222 45788
Q ss_pred CCcEEEcCceEEEEeC---CcE---EEEEc---------------CCCeEEEEecCeEEEccCCCCCcchHHHHHHh-CC
Q 011476 291 DGIDVKLGSMVVKVTD---KEI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQ 348 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~---~~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~-g~ 348 (485)
.||++++++.++++.. +.+ .+... .+|++.+++||.||+|+| +.|+. .++... ++
T Consensus 621 ~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G--~~p~~-~l~~~~~gl 697 (752)
T PRK12778 621 EGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG--VSPNP-LVPSSIPGL 697 (752)
T ss_pred cCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC--CCCCc-cccccccCc
Confidence 8999999999999853 222 22110 123445799999999999 67776 454443 55
Q ss_pred --CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 349 --TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 349 --~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
+.+|.|.||++++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 698 ~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~-~vv~Av~~G~~AA~~ 744 (752)
T PRK12778 698 ELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGA-TVILAMGDGKRAAAA 744 (752)
T ss_pred eECCCCCEEeCCCCCC-CCCCEEEeCCccCCcH-HHHHHHHHHHHHHHH
Confidence 66789999999987 9999999999997643 477888887776653
No 60
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=280.21 Aligned_cols=280 Identities=18% Similarity=0.199 Sum_probs=191.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
...++|+||||||||+++|..|++.|++|+|||+.+.+++... .. .+....+.++.....+.+.+.|++++ .+. ..
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~-~g-ip~~~~~~~~~~~~~~~l~~~Gv~i~-~~~-~v 266 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR-YG-IPRFRLPESVIDADIAPLRAMGAEFR-FNT-VF 266 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee-ec-CCCCCCCHHHHHHHHHHHHHcCCEEE-eCC-cc
Confidence 4568999999999999999999999999999999988876421 11 12222334555556677788887753 233 22
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
.++ +.+.+. ...||+||||||+++ +.+++||.+ ++++. +..+..... ...
T Consensus 267 ~~d-----v~~~~~-----------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~------~~~~l~~~~----~~~-- 318 (652)
T PRK12814 267 GRD-----ITLEEL-----------QKEFDAVLLAVGAQKASKMGIPGEELPGVIS------GIDFLRNVA----LGT-- 318 (652)
T ss_pred cCc-----cCHHHH-----------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEe------HHHHHHHhh----cCC--
Confidence 221 111111 335999999999986 577899975 33331 111111110 000
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcc-ccccccHHHHHHHHHHHHhCC
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~l~~~g 292 (485)
....+++|+|||||++|+|+|..+.+++ ..+|+++++++. .++..+.++ .+ +.+.|
T Consensus 319 -----~~~~gk~VvVIGgG~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei----~~-a~~eG 375 (652)
T PRK12814 319 -----ALHPGKKVVVIGGGNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEI----EE-ALAEG 375 (652)
T ss_pred -----cccCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH----HH-HHHcC
Confidence 0135689999999999999999999873 247999998875 455544333 22 34679
Q ss_pred cEEEcCceEEEEeC--CcEEE--EEc---------------CCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCC
Q 011476 293 IDVKLGSMVVKVTD--KEIFT--KVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNR 351 (485)
Q Consensus 293 V~v~~~~~v~~v~~--~~v~~--~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~ 351 (485)
|+|++++.++++.. +++.+ ... .+|++.++++|.||+|+| +.|++ .+++..|+ +.+
T Consensus 376 V~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG--~~p~~-~ll~~~gl~~~~~ 452 (652)
T PRK12814 376 VSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG--QQVDP-PIAEAAGIGTSRN 452 (652)
T ss_pred CcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC--CcCCc-ccccccCccccCC
Confidence 99999999998863 33221 110 134455799999999999 67887 56676776 567
Q ss_pred CceeeCC-CccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 352 RALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 352 g~i~vd~-~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
|+|.||+ +++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 453 G~I~vd~~~~~T-s~pgVfA~GDv~~g~~-~v~~Ai~~G~~AA~~ 495 (652)
T PRK12814 453 GTVKVDPETLQT-SVAGVFAGGDCVTGAD-IAINAVEQGKRAAHA 495 (652)
T ss_pred CcEeeCCCCCcC-CCCCEEEcCCcCCCch-HHHHHHHHHHHHHHH
Confidence 8999997 5776 9999999999997644 367777777766543
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=4.8e-31 Score=271.11 Aligned_cols=293 Identities=15% Similarity=0.191 Sum_probs=191.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
....++|+||||||||+++|..|++.|++|+|||+.+.+++.. ...++... .+.++.....+++.++|+++. .+..+
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gip~~~-~~~~~~~~~~~~~~~~gv~~~-~~~~v 216 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL-RYGIPDFK-LEKEVIDRRIELMEAEGIEFR-TNVEV 216 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee-eecCCccc-CCHHHHHHHHHHHHhCCcEEE-eCCEE
Confidence 3456899999999999999999999999999999998877532 11111111 223455556677888897753 33332
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHH-HHHhhcC
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVI-ESFEKAS 211 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 211 (485)
..+. .... ....||+||+|||+. ++.+++||.+ .+++.. ..+..... .+.....
T Consensus 217 -~~~~-----~~~~-----------~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~------~~~l~~~~~~~~~~~~ 273 (471)
T PRK12810 217 -GKDI-----TAEE-----------LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFA------MDFLIQNTRRVLGDET 273 (471)
T ss_pred -CCcC-----CHHH-----------HHhhCCEEEEecCCCCCCcCCCCCccCCCcEEH------HHHHHHHHhhhccccc
Confidence 2211 1110 135799999999997 7788999975 444422 11111110 0000000
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccc-cH-----HHHHHHH
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DK-----RITAFAE 285 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~-~~-----~~~~~~~ 285 (485)
.+.. ...+++|+|||||++|+|+|..+.+.+ ..+|++++..+...... +. .......
T Consensus 274 ~~~~----~~~gk~VvVIGgG~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (471)
T PRK12810 274 EPFI----SAKGKHVVVIGGGDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEV 336 (471)
T ss_pred cccc----cCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHH
Confidence 0100 135679999999999999999888873 24788766544321111 00 0011134
Q ss_pred HHHHhCCcEEEcCceEEEEeC--CcEEEEE-----c-------CCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--C
Q 011476 286 EKFSRDGIDVKLGSMVVKVTD--KEIFTKV-----R-------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (485)
Q Consensus 286 ~~l~~~gV~v~~~~~v~~v~~--~~v~~~~-----~-------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~ 349 (485)
+.+++.||++++++.+++|.+ +.++.+. . .+|++.++++|.||+|+| ..|+...|++.+++ +
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G--~~p~~~~l~~~~gl~~~ 414 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG--FTGPEAGLLAQFGVELD 414 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC--cCCCchhhccccCcccC
Confidence 667888999999999999974 3333111 1 124456799999999999 67775467777776 5
Q ss_pred CCCceeeC-CCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 350 NRRALATD-EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 350 ~~g~i~vd-~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
.+|.+.+| ++++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 415 ~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~-~~~~Av~~G~~AA~ 458 (471)
T PRK12810 415 ERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS-LVVWAIAEGRQAAR 458 (471)
T ss_pred CCCCEEeCCCcccC-CCCCEEEccccCCCch-hHHHHHHHHHHHHH
Confidence 67899998 68997 9999999999998543 46677777776654
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=285.63 Aligned_cols=291 Identities=16% Similarity=0.133 Sum_probs=194.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+|||||||||+||.+|++.|++|+|||+.+..++.. ...++ ....+.++.....+.+.+.|++++ ...+.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l-~~gip-~~rl~~e~~~~~~~~l~~~Gv~~~--~~~~v 503 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVL-QYGIP-SFRLPRDIIDREVQRLVDIGVKIE--TNKVI 503 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCccee-eccCC-ccCCCHHHHHHHHHHHHHCCCEEE--eCCcc
Confidence 357899999999999999999999999999999998877631 12222 222344677777888889998753 23232
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
. +.+++.+.. ....||+||||||++ |+.+++||.+ ++++...+.....++. .....+
T Consensus 504 g-----~~~~~~~l~---------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~-------~~~~~~ 562 (1006)
T PRK12775 504 G-----KTFTVPQLM---------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLM-------GGDKFP 562 (1006)
T ss_pred C-----CccCHHHHh---------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhc-------Cccccc
Confidence 2 223322210 035699999999995 8999999975 4444332222111110 000000
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhCC
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~g 292 (485)
.. +.....+++|+|||||++|+|+|..+.+++ ...|++++++... ++....+ .+.+++.|
T Consensus 563 ~~-~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlG-------------a~~Vtiv~rr~~~em~a~~~e-----~~~a~eeG 623 (1006)
T PRK12775 563 FL-DTPISLGKSVVVIGAGNTAMDCLRVAKRLG-------------APTVRCVYRRSEAEAPARIEE-----IRHAKEEG 623 (1006)
T ss_pred cc-cCCccCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEeecCcccCCCCHHH-----HHHHHhCC
Confidence 00 001135789999999999999999999874 2368888876542 2322111 25677899
Q ss_pred cEEEcCceEEEEeC---CcE---EEEEc------C--------CCeEEEEecCeEEEccCCCCCcchHHHHHH-hCC--C
Q 011476 293 IDVKLGSMVVKVTD---KEI---FTKVR------G--------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ--T 349 (485)
Q Consensus 293 V~v~~~~~v~~v~~---~~v---~~~~~------~--------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~g~--~ 349 (485)
|++++++.++++.. +.+ .+... . +|++.+++||.||+|+| +.|++ .++.. .++ +
T Consensus 624 I~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG--~~p~~-~~~~~~~gl~l~ 700 (1006)
T PRK12775 624 IDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALG--TKANP-IITQSTPGLALN 700 (1006)
T ss_pred CEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCC--cCCCh-hhhhccCCcccC
Confidence 99999999999852 222 22210 1 23445799999999999 67887 44433 244 6
Q ss_pred CCCceeeCC-----CccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 350 NRRALATDE-----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 350 ~~g~i~vd~-----~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
.+|.|.+|+ +++| |.|+|||+|||+.++. .+..++.++..+|..
T Consensus 701 ~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~-~vv~Ai~~Gr~AA~~ 749 (1006)
T PRK12775 701 KWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA-TVILAMGAGRRAARS 749 (1006)
T ss_pred CCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc-HHHHHHHHHHHHHHH
Confidence 788999996 6787 9999999999997654 467888888776654
No 63
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-31 Score=244.14 Aligned_cols=303 Identities=21% Similarity=0.299 Sum_probs=211.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEc---CCCC-----cccCC----Ccccccc------C------------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVIS---PRNY-----FAFTP----LLPSVTC------G------------ 105 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie---~~~~-----~~~~~----~~~~~~~------~------------ 105 (485)
...+|++|||||.+||+||..++..|.+|.++| +.+. +|+++ ++|.... |
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 457999999999999999999999999999998 3321 22221 1111100 0
Q ss_pred ------cccccccccchHHHHhhCC--Ce-------EEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEc
Q 011476 106 ------TVEARSIVEPVRNIVRKKN--VD-------ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (485)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~g--v~-------v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviA 170 (485)
+.+++.+....++.++..+ -. +.++++-...+++. ++..... .++++.+.++.+|||
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h--~I~at~~------~gk~~~~ta~~fvIa 168 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH--KIKATNK------KGKERFLTAENFVIA 168 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc--eEEEecC------CCceEEeecceEEEE
Confidence 0011122222223332221 11 22445555555543 3333322 224568999999999
Q ss_pred cCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHH
Q 011476 171 MGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDL 250 (485)
Q Consensus 171 tG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~ 250 (485)
||.+|+.|+|||..+..++.. +.+++|..|. +.+|||+|++++|||..|+.+
T Consensus 169 tG~RPrYp~IpG~~Ey~ITSD----------------DlFsl~~~PG-------kTLvVGa~YVaLECAgFL~gf----- 220 (503)
T KOG4716|consen 169 TGLRPRYPDIPGAKEYGITSD----------------DLFSLPYEPG-------KTLVVGAGYVALECAGFLKGF----- 220 (503)
T ss_pred ecCCCCCCCCCCceeeeeccc----------------ccccccCCCC-------ceEEEccceeeeehhhhHhhc-----
Confidence 999999999999877665432 2345565554 899999999999999999998
Q ss_pred HhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC---Cc--EEEEEcCCCeEEEEecC
Q 011476 251 FKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD---KE--IFTKVRGNGETSSMPYG 325 (485)
Q Consensus 251 ~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~---~~--v~~~~~~~G~~~~i~~D 325 (485)
|.+||+..|+ -+|+.||.++++.+.+.|++.||+|+..+.+++|+. ++ +.......++..+-++|
T Consensus 221 ---------g~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~yd 290 (503)
T KOG4716|consen 221 ---------GYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYD 290 (503)
T ss_pred ---------CCCcEEEEEE-eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhh
Confidence 6899998875 467899999999999999999999999988877763 33 33344344444446799
Q ss_pred eEEEccCCCCCcchHHH-HHHhCC---CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc------
Q 011476 326 MVVWSTGIAPHAIIKDF-MKQVGQ---TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK------ 395 (485)
Q Consensus 326 ~vi~a~G~~~~p~~~~l-~~~~g~---~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~------ 395 (485)
.|+||+| +.++++++ ++.+|+ ...|.|.+|+.-+| ++|+|||+||.....+....-++.++...|..
T Consensus 291 TVl~AiG--R~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~ 367 (503)
T KOG4716|consen 291 TVLWAIG--RKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGST 367 (503)
T ss_pred hhhhhhc--cccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceecCCcccchhhhhhchHHHHHHhcCcc
Confidence 9999999 88888887 777787 35688999999897 99999999999887555444444444333321
Q ss_pred ---------------CCCCccCHHHHH
Q 011476 396 ---------------DNSGTLTVKEFQ 407 (485)
Q Consensus 396 ---------------~~~g~~~~~~~~ 407 (485)
...|.++++|.+
T Consensus 368 q~~dy~~V~TTVFTPLEy~c~GlsEE~ 394 (503)
T KOG4716|consen 368 QLMDYDDVATTVFTPLEYGCVGLSEED 394 (503)
T ss_pred eeeeccCCceeeecchhccccCCCHHH
Confidence 155888888876
No 64
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=7.8e-30 Score=253.16 Aligned_cols=299 Identities=18% Similarity=0.186 Sum_probs=188.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
..+++|+|||+|++|+++|..|++.|++|++||+.+.+++.... .........+.+. ...+.+.+.++++ +.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~-~~~~~l~~~~i~~-~~~~~v~ 92 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVR-EGVKELEEAGVVF-HTRTKVC 92 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHHHH-HHHHHHHhCCeEE-ecCcEEe
Confidence 45679999999999999999999999999999998887653211 1111111222222 2333445557665 2344454
Q ss_pred EEec----CCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhh
Q 011476 136 KIDA----ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEK 209 (485)
Q Consensus 136 ~id~----~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (485)
.++. ....+..... ..+...+.||+||||||+ .|+.|++||.+ ++++.. ......+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~--~~~~~~~~~~~---~~~ 161 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIV------SLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSA--LEYLFRIRAAK---LGY 161 (352)
T ss_pred eccccccccccccccccC------CHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeH--HHHHHHhhhcc---ccc
Confidence 4322 0111110000 000114789999999999 47888999975 233221 11111111100 000
Q ss_pred cCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCce-EEEEecCccccccccHHHHHHHHHHH
Q 011476 210 ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHILNMFDKRITAFAEEKF 288 (485)
Q Consensus 210 ~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~l 288 (485)
......+ ...+++++|||+|++|+|+|..+... +.+ |+++++++..... ......+.|
T Consensus 162 ~~~~~~~---~~~g~~vvViG~G~~g~e~A~~l~~~--------------g~~~Vtvi~~~~~~~~~----~~~~~~~~l 220 (352)
T PRK12770 162 LPWEKVP---PVEGKKVVVVGAGLTAVDAALEAVLL--------------GAEKVYLAYRRTINEAP----AGKYEIERL 220 (352)
T ss_pred ccccccc---ccCCCEEEEECCCHHHHHHHHHHHHc--------------CCCeEEEEeecchhhCC----CCHHHHHHH
Confidence 0000111 12367999999999999999999875 465 9999987643211 123345668
Q ss_pred HhCCcEEEcCceEEEEeCC-cE---EEEEc---------------CCCeEEEEecCeEEEccCCCCCcchHHHHHH-hCC
Q 011476 289 SRDGIDVKLGSMVVKVTDK-EI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ 348 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~~-~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~g~ 348 (485)
++.||++++++.+++++++ ++ .+... .+|+..+++||.||+++| ..|++ .|..+ +|+
T Consensus 221 ~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G--~~p~~-~l~~~~~g~ 297 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG--EIPTP-PFAKECLGI 297 (352)
T ss_pred HHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc--cCCCc-hhhhcccCc
Confidence 9999999999999999753 22 22110 134445699999999999 57776 56555 666
Q ss_pred --CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 349 --TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 349 --~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+.+|+|.||++++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 298 ~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~~~-~~~~A~~~g~~aa~ 343 (352)
T PRK12770 298 ELNRKGEIVVDEKHMT-SREGVFAAGDVVTGPS-KIGKAIKSGLRAAQ 343 (352)
T ss_pred eecCCCcEeeCCCccc-CCCCEEEEcccccCcc-hHHHHHHHHHHHHH
Confidence 56788999999998 8999999999998644 45666666665543
No 65
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.5e-30 Score=221.66 Aligned_cols=281 Identities=17% Similarity=0.226 Sum_probs=211.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC---C-CcccCC-------CccccccCcccccccccchHHHHhhCCCe
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR---N-YFAFTP-------LLPSVTCGTVEARSIVEPVRNIVRKKNVD 126 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~---~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 126 (485)
..+|+|||+|||+..||++++++..+.+|+|-- + -.+++. .+|.++.|..-+ ++.+.++++..+.|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~-~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGP-ELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccH-HHHHHHHHHHHhhcce
Confidence 459999999999999999999999999999932 1 122211 233443333222 7888999999999966
Q ss_pred EEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHH
Q 011476 127 ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIES 206 (485)
Q Consensus 127 v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 206 (485)
++..+|..+|...+-+.+-+.. ..+.+|.+|+|||+..+.+.+||..+.-+. .+.++.|
T Consensus 87 --i~tEtVskv~~sskpF~l~td~---------~~v~~~avI~atGAsAkRl~~pg~ge~~fW----------qrGiSaC 145 (322)
T KOG0404|consen 87 --IITETVSKVDLSSKPFKLWTDA---------RPVTADAVILATGASAKRLHLPGEGEGEFW----------QRGISAC 145 (322)
T ss_pred --eeeeehhhccccCCCeEEEecC---------CceeeeeEEEecccceeeeecCCCCcchHH----------hcccchh
Confidence 5678899999998877765432 289999999999999999999997433221 2233444
Q ss_pred HhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHH
Q 011476 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286 (485)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 286 (485)
.-|...-+ .++.|..+|||||.+++|-|..|..+ +.+|++++|++++ ..+..+++
T Consensus 146 AVCDGaap-----ifrnk~laVIGGGDsA~EEA~fLtky--------------askVyii~Rrd~f------RAs~~Mq~ 200 (322)
T KOG0404|consen 146 AVCDGAAP-----IFRNKPLAVIGGGDSAMEEALFLTKY--------------ASKVYIIHRRDHF------RASKIMQQ 200 (322)
T ss_pred hcccCcch-----hhcCCeeEEEcCcHHHHHHHHHHHhh--------------ccEEEEEEEhhhh------hHHHHHHH
Confidence 44433211 15678899999999999999999998 5899999999987 34555555
Q ss_pred HH-HhCCcEEEcCceEEEEeCC-----cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCC-C
Q 011476 287 KF-SRDGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDE-W 359 (485)
Q Consensus 287 ~l-~~~gV~v~~~~~v~~v~~~-----~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~-~ 359 (485)
.. +..+|++++++.+.+..++ .+.+.....|++..++++-++.++| ..|+++.|-.+..++.+|+|++-+ .
T Consensus 201 ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG--H~Pat~~l~gqve~d~~GYi~t~pgt 278 (322)
T KOG0404|consen 201 RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG--HSPATKFLKGQVELDEDGYIVTRPGT 278 (322)
T ss_pred HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec--CCchhhHhcCceeeccCceEEeccCc
Confidence 44 4559999999999988765 3677777788888899999999999 799995555555668999999885 4
Q ss_pred ccccCCCCeEEeccccCCCCcchHHHHHH
Q 011476 360 LRVEGSDSIYALGDCATVNQRRVMEDIAA 388 (485)
Q Consensus 360 l~t~~~~~Vya~GD~~~~~~~~~~~~~~~ 388 (485)
-.| |+|++||+||+....-++.+.++..
T Consensus 279 s~T-svpG~FAAGDVqD~kyRQAvTaAgs 306 (322)
T KOG0404|consen 279 SLT-SVPGVFAAGDVQDKKYRQAVTAAGS 306 (322)
T ss_pred ccc-cccceeeccccchHHHHHHHhhhcc
Confidence 555 9999999999987655555554444
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=6e-30 Score=272.86 Aligned_cols=292 Identities=16% Similarity=0.152 Sum_probs=194.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+|||||||||++|.+|++.|++|+|||+.+.+++... ..+ +....++++.....+++++.|++++ .+..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~-~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT-FGI-PAFKLDKSLLARRREIFSAMGIEFE-LNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee-ecC-CCccCCHHHHHHHHHHHHHCCeEEE-CCCEeC
Confidence 4578999999999999999999999999999999988876421 122 2222233555556677888897753 333331
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
..+.+.+. ...||+|++|||+.. +.+++||.+ .+++... +. +..............
T Consensus 402 ------~~i~~~~~-----------~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~---~~--l~~~~~~~~~~~~~~ 459 (654)
T PRK12769 402 ------KDISLESL-----------LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDAL---PF--LIANTKQVMGLEELP 459 (654)
T ss_pred ------CcCCHHHH-----------HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhH---HH--HHHHHhhhccCcccc
Confidence 11111110 346999999999964 567899876 3443210 00 011111111000000
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhCC
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~g 292 (485)
..+ .....+++|+|||||++|+|+|..+.+++ ..+|+++++++.. ++..+.+ .+.+++.|
T Consensus 460 ~~~-~~~~~gk~VvVIGgG~~a~d~A~~a~r~g-------------a~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~G 520 (654)
T PRK12769 460 EEP-FINTAGLNVVVLGGGDTAMDCVRTALRHG-------------ASNVTCAYRRDEANMPGSKKE-----VKNAREEG 520 (654)
T ss_pred ccc-cccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeEecCCCCCCCCHHH-----HHHHHHcC
Confidence 000 00135689999999999999999988873 2479999987654 5544333 35688899
Q ss_pred cEEEcCceEEEEeC---CcE---EEEEc------C---------CCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--C
Q 011476 293 IDVKLGSMVVKVTD---KEI---FTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (485)
Q Consensus 293 V~v~~~~~v~~v~~---~~v---~~~~~------~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~ 349 (485)
|++++++.++++.. +.+ .+... . .|++.++++|.||+|+| +.|+...+++.+++ +
T Consensus 521 v~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG--~~p~~~~~~~~~gl~~~ 598 (654)
T PRK12769 521 ANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG--FNPHGMPWLESHGVTVD 598 (654)
T ss_pred CeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECcc--CCCCccccccccCCcCC
Confidence 99999999999852 233 22211 1 24455799999999999 57765356677776 6
Q ss_pred CCCceeeCC----CccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 350 NRRALATDE----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 350 ~~g~i~vd~----~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
.+|.|.||+ +++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 599 ~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~~-~vv~Ai~~Gr~AA~~ 646 (654)
T PRK12769 599 KWGRIIADVESQYRYQT-SNPKIFAGGDAVRGAD-LVVTAMAEGRHAAQG 646 (654)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCcCCCCc-HHHHHHHHHHHHHHH
Confidence 788999985 4787 9999999999987644 467888888776653
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=4.4e-29 Score=255.67 Aligned_cols=290 Identities=14% Similarity=0.141 Sum_probs=193.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+|||+||+|+++|..|++.|++|+|+|+.+.+++... ..++.... +.++.....+++++.|++++ .+..+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~-~gip~~~~-~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT-FGIPSFKL-DKAVLSRRREIFTAMGIEFH-LNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee-ecCccccC-CHHHHHHHHHHHHHCCCEEE-CCCEeC
Confidence 4678999999999999999999999999999999988776421 12222222 33555666778888998763 444441
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCC-CccccccChhHHHHHHHHHH-HHHhhcCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVI-ESFEKASL 212 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 212 (485)
+.+.+.+ ....||+||+|||+.+ +.+++||.+ ++++.. ..+..... ........
T Consensus 216 ------~~~~~~~-----------~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a------~~~l~~~~~~~~~~~~~ 272 (467)
T TIGR01318 216 ------RDISLDD-----------LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQA------LPFLIANTRQLMGLPES 272 (467)
T ss_pred ------CccCHHH-----------HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEH------HHHHHHHHHHhcCCCcc
Confidence 1122111 0346999999999987 457899976 444422 11111100 00000000
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~ 291 (485)
+..+ .....+++++|||+|++|+++|..+.+++ ..+||++++++.. ++..+.++ +.+++.
T Consensus 273 ~~~~-~~~~~gk~VvVIGgG~~a~d~A~~a~~~G-------------a~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~ 333 (467)
T TIGR01318 273 PEEP-LIDVEGKRVVVLGGGDTAMDCVRTAIRLG-------------AASVTCAYRRDEANMPGSRREV-----ANAREE 333 (467)
T ss_pred cccc-ccccCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEEEecCcccCCCCHHHH-----HHHHhc
Confidence 0000 00124679999999999999999998873 1479999998763 55444333 456788
Q ss_pred CcEEEcCceEEEEeC---CcE---EEEEc---------------CCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--
Q 011476 292 GIDVKLGSMVVKVTD---KEI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (485)
Q Consensus 292 gV~v~~~~~v~~v~~---~~v---~~~~~---------------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-- 348 (485)
||++++++.++++.. +.+ ++... .+|++.+++||.||+|+| ..|+...+++..++
T Consensus 334 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G--~~p~~~~~~~~~gl~~ 411 (467)
T TIGR01318 334 GVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFG--FQPHAMPWLAGHGITL 411 (467)
T ss_pred CCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCc--CCCCccccccccCccC
Confidence 999999999999953 223 22211 124455799999999999 57765355666665
Q ss_pred CCCCceeeC----CCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 349 TNRRALATD----EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 349 ~~~g~i~vd----~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+.+|.|.|| .+++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 412 ~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~~~-~~~~Ai~~G~~aA~ 459 (467)
T TIGR01318 412 DSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRGAD-LVVTAVAEGRQAAQ 459 (467)
T ss_pred CCCCCEEeCCccccCccC-CCCCEEEECCcCCCcc-HHHHHHHHHHHHHH
Confidence 567899999 67887 8999999999987644 35677777776654
No 68
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.97 E-value=2.8e-29 Score=254.17 Aligned_cols=310 Identities=16% Similarity=0.143 Sum_probs=192.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCC--CCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEe
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~ 132 (485)
...+++|+||||||||++||..|+. .|++|+|||+.+.+++. +...+.+.......+...+.+++...++++ +.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl-vr~gvaP~~~~~k~v~~~~~~~~~~~~v~~-~~nv 100 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL-VRSGVAPDHPETKNVTNQFSRVATDDRVSF-FGNV 100 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce-EeeccCCCcchhHHHHHHHHHHHHHCCeEE-EcCE
Confidence 3457899999999999999999985 79999999999987763 222333333344455666777777777553 1222
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhc
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKA 210 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (485)
.+ ++.+.+++. ...||+||||||+.+ +.+++||.+ ++++...+ ...+.+...++..
T Consensus 101 ~v------g~dvtl~~L-----------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~---fl~~~ng~~d~~~-- 158 (491)
T PLN02852 101 TL------GRDVSLSEL-----------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSARE---FVWWYNGHPDCVH-- 158 (491)
T ss_pred EE------CccccHHHH-----------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHH---HHHHhhcchhhhh--
Confidence 22 123333321 347999999999986 788999976 45553322 2211111111100
Q ss_pred CCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhC-----cCCC-CC-ceEEEEecCccccccc-cHHH--
Q 011476 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY-----PKVK-DS-VKITLLEAADHILNMF-DKRI-- 280 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~-----p~~~-~g-~~Vtlv~~~~~~l~~~-~~~~-- 280 (485)
+.. ....+++|+|||+|++|+|+|..|.+...+...... ..++ .+ .+|++++|+...-..+ ..++
T Consensus 159 -~~~----~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elre 233 (491)
T PLN02852 159 -LPP----DLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRE 233 (491)
T ss_pred -hhh----cccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHH
Confidence 000 002467999999999999999999875211000000 0011 13 4699999987421000 1111
Q ss_pred -----------------------------------HHHHHHHHHh---------CCcEEEcCceEEEEeC-----Cc---
Q 011476 281 -----------------------------------TAFAEEKFSR---------DGIDVKLGSMVVKVTD-----KE--- 308 (485)
Q Consensus 281 -----------------------------------~~~~~~~l~~---------~gV~v~~~~~v~~v~~-----~~--- 308 (485)
.+.+.+...+ ++|.|++...+++|.. +.
T Consensus 234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~ 313 (491)
T PLN02852 234 LLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAG 313 (491)
T ss_pred HhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEE
Confidence 1222222222 5799999999999962 22
Q ss_pred EEEEEc--------------CCCeEEEEecCeEEEccCCCCCcchHH-HHHHhCC--CCCCceeeCCCccccCCCCeEEe
Q 011476 309 IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYAL 371 (485)
Q Consensus 309 v~~~~~--------------~~G~~~~i~~D~vi~a~G~~~~p~~~~-l~~~~g~--~~~g~i~vd~~l~t~~~~~Vya~ 371 (485)
+.+... .+|+..+++||.||.|+|+...|+... |....++ +.+|.|.+|+.++| +.|+|||+
T Consensus 314 l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAa 392 (491)
T PLN02852 314 VKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVV 392 (491)
T ss_pred EEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEe
Confidence 233211 135666899999999999754565521 2233344 66799999988887 89999999
Q ss_pred ccccCCCCcchHHHHHHHHhhcc
Q 011476 372 GDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 372 GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
|||..++...+..++.....++.
T Consensus 393 GDi~~Gp~gvI~t~~~dA~~ta~ 415 (491)
T PLN02852 393 GWLKRGPTGIIGTNLTCAEETVA 415 (491)
T ss_pred eeEecCCCCeeeecHhhHHHHHH
Confidence 99999877666555555554443
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=232.04 Aligned_cols=283 Identities=20% Similarity=0.253 Sum_probs=211.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccc----c-ccCcccccccccchHHHHhhCCCeEEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPS----V-TCGTVEARSIVEPVRNIVRKKNVDICF 129 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~gv~v~~ 129 (485)
....++|+||||||||-+||.|.+++|.+.-|+-.+ ||++.+-.. + .....+-..+...+++..++|.+++ .
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDi-m 284 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDV-M 284 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhcCchh-h
Confidence 355799999999999999999999999998777543 888653221 1 1222223356667888889998876 3
Q ss_pred EEeEEEEEecC-----CCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHH
Q 011476 130 WEAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVI 204 (485)
Q Consensus 130 ~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
.-.+++.+.+. ...|++.+|. .+..+.+|||||++.+..++||.++.-. +.+.
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGa----------vLkaktvIlstGArWRn~nvPGE~e~rn------------KGVa 342 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGA----------VLKARTVILATGARWRNMNVPGEDEYRN------------KGVA 342 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCc----------eeccceEEEecCcchhcCCCCchHHHhh------------CCee
Confidence 33456666552 2367777765 8999999999999999999999863100 0001
Q ss_pred HHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHH
Q 011476 205 ESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFA 284 (485)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~ 284 (485)
.|..| +...+++|+|+|||||++|+|.|..|+-.. ..||+++-.+.+ ...+.+
T Consensus 343 yCPHC-------DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL------kAD~VL 395 (520)
T COG3634 343 YCPHC-------DGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL------KADAVL 395 (520)
T ss_pred eCCCC-------CCcccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh------hhHHHH
Confidence 11111 112368899999999999999999999874 589999776654 334566
Q ss_pred HHHHHhC-CcEEEcCceEEEEeCC-----cEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCC
Q 011476 285 EEKFSRD-GIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDE 358 (485)
Q Consensus 285 ~~~l~~~-gV~v~~~~~v~~v~~~-----~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~ 358 (485)
++.++.. +|+++++..-++|.++ ++.++...+|+.+.++-+-|++-+| ..||++.|-....++.+|.|.||.
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~WLkg~vel~~rGEIivD~ 473 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTEWLKGAVELNRRGEIIVDA 473 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChhHhhchhhcCcCccEEEec
Confidence 7777664 8999999999999875 3667777788888899999999999 699994443444568899999999
Q ss_pred CccccCCCCeEEeccccCCCCcchHHHHHHHHhh
Q 011476 359 WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (485)
Q Consensus 359 ~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~ 392 (485)
...| |+|+|||+|||+..+..+++-++.++..+
T Consensus 474 ~g~T-svpGvFAAGD~T~~~yKQIIIamG~GA~A 506 (520)
T COG3634 474 RGET-NVPGVFAAGDCTTVPYKQIIIAMGEGAKA 506 (520)
T ss_pred CCCc-CCCceeecCcccCCccceEEEEecCcchh
Confidence 9998 99999999999999888776666555443
No 70
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=9.8e-29 Score=262.39 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=194.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.+.++|+|||+|||||++|..|++.|++|+|+|+.+.+++.. ...++...++ .++.....+++++.|++++ .+..+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l-~~gip~~~l~-~~~~~~~~~~~~~~Gv~~~-~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGML-TFGIPPFKLD-KTVLSQRREIFTAMGIDFH-LNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCee-eccCCcccCC-HHHHHHHHHHHHHCCeEEE-cCCccC
Confidence 457999999999999999999999999999999999887642 2222222222 3555556678888998763 343331
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCC-CccccccChhHHHHHHHHH-HHHHhhcCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVE-ENCNFLKEVEDAQRIRRNV-IESFEKASL 212 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 212 (485)
..+.+.+ ....||+|++|||+.+ ..+++||.+ .+++. +..+.... .+.......
T Consensus 385 ------~~~~~~~-----------l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~ 441 (639)
T PRK12809 385 ------RDITFSD-----------LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ------ALPFLTAHTRQLMGLPES 441 (639)
T ss_pred ------CcCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEe------HHHHHHHHHHhhccCccc
Confidence 1122211 1456999999999975 567899976 34332 11111111 011100000
Q ss_pred CCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHhC
Q 011476 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRD 291 (485)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~~ 291 (485)
...+ .....+++++|||+|++++++|..+.+++ ..+||++++++.. ++..+.++ ..+++.
T Consensus 442 ~~~~-~~~~~gk~vvViGgG~~a~d~a~~~~~~G-------------a~~Vt~v~rr~~~~~~~~~~e~-----~~a~~e 502 (639)
T PRK12809 442 EEYP-LTDVEGKRVVVLGGGDTTMDCLRTSIRLN-------------AASVTCAYRRDEVSMPGSRKEV-----VNAREE 502 (639)
T ss_pred cccc-cccCCCCeEEEECCcHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH-----HHHHHc
Confidence 0000 01135789999999999999999988873 2489999998755 55444333 346788
Q ss_pred CcEEEcCceEEEEeC---CcEE---EEEcC---------------CCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--
Q 011476 292 GIDVKLGSMVVKVTD---KEIF---TKVRG---------------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (485)
Q Consensus 292 gV~v~~~~~v~~v~~---~~v~---~~~~~---------------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-- 348 (485)
||++++++.+++|.. +.+. +.... .|+++++++|.||+|+| +.|+...+++.+++
T Consensus 503 Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG--~~p~~~~~~~~~gl~~ 580 (639)
T PRK12809 503 GVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG--FQAHAMPWLQGSGIKL 580 (639)
T ss_pred CCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcC--CCCCccccccccCccc
Confidence 999999999999963 2333 21111 24556799999999999 56654356666776
Q ss_pred CCCCceeeCC----CccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 349 TNRRALATDE----WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 349 ~~~g~i~vd~----~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
+.+|.|.+|+ +++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 581 ~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~~-~vv~Ai~~Gr~AA~~ 629 (639)
T PRK12809 581 DKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGAD-LVVTAMAAGRQAARD 629 (639)
T ss_pred CCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCch-HHHHHHHHHHHHHHH
Confidence 5678899985 4787 9999999999997643 467888888776653
No 71
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=2.9e-28 Score=250.56 Aligned_cols=295 Identities=17% Similarity=0.230 Sum_probs=185.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
...++|+|||+|++|+++|.+|++.|++|+|+|+.+.+++.. ...++.... ..++.....+++++.|+++. .+..+.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l-~~gip~~~~-~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 217 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL-MYGIPNMKL-DKAIVDRRIDLLSAEGIDFV-TNTEIG 217 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eccCCCccC-CHHHHHHHHHHHHhCCCEEE-CCCEeC
Confidence 456899999999999999999999999999999998776532 111111111 22445555577788897763 334332
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
.+ +..+ .....||+||+|||++ |+.+++||.+ ++++... ++..............
T Consensus 218 -~~-----~~~~-----------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~------~~l~~~~~~~~~~~~~ 274 (485)
T TIGR01317 218 -VD-----ISAD-----------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAM------EFLPSATKALLGKDFK 274 (485)
T ss_pred -Cc-----cCHH-----------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHH------HHHHHHhhhhcccccc
Confidence 11 1100 0145799999999998 8889999976 3444321 1111110000000000
Q ss_pred CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccc---------cH--HHHH
Q 011476 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF---------DK--RITA 282 (485)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~---------~~--~~~~ 282 (485)
.+. .....+|+|+|||||++|+|+|..+.+++ ..+|+++++.+..+... +. +...
T Consensus 275 ~~~-~~~~~gk~VvViGgG~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~ 340 (485)
T TIGR01317 275 DII-FIKAKGKKVVVIGGGDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDY 340 (485)
T ss_pred ccc-cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHH
Confidence 000 00135689999999999999998888874 45899999877654311 11 1222
Q ss_pred HHHHHHHhCCcEE-EcCceEEEEeCC---cEEEEE--------cCC---------CeEEEEecCeEEEccCCCCCcchHH
Q 011476 283 FAEEKFSRDGIDV-KLGSMVVKVTDK---EIFTKV--------RGN---------GETSSMPYGMVVWSTGIAPHAIIKD 341 (485)
Q Consensus 283 ~~~~~l~~~gV~v-~~~~~v~~v~~~---~v~~~~--------~~~---------G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (485)
..++..+..||.+ ++++.+.++.++ .+.... ..+ |+..+++||.||+|+|+ ..|++ .
T Consensus 341 a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~-~~p~~-~ 418 (485)
T TIGR01317 341 AHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF-VGPEQ-I 418 (485)
T ss_pred HHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc-CCCcc-c
Confidence 2334444457654 567788887542 332211 012 34456999999999994 13776 5
Q ss_pred HHHHhCC--CCCCceee-CCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhcc
Q 011476 342 FMKQVGQ--TNRRALAT-DEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKAD 394 (485)
Q Consensus 342 l~~~~g~--~~~g~i~v-d~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~ 394 (485)
+++.+|+ +.+|.+.+ |++++| +.|+|||+|||+..+. .+..++.++..+|.
T Consensus 419 ~~~~~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~g~~-~~~~Av~~G~~AA~ 472 (485)
T TIGR01317 419 LLDDFGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRRGQS-LIVWAINEGRKAAA 472 (485)
T ss_pred cccccCcccCCCCCEEecCCCceE-CCCCEEEeeccCCCcH-HHHHHHHHHHHHHH
Confidence 7777777 56788854 567887 9999999999987543 46667777766554
No 72
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=9.4e-28 Score=254.62 Aligned_cols=290 Identities=16% Similarity=0.161 Sum_probs=187.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
..+.++|+|||+|+||+++|..|++.|++|+|+|+.+.+++... ...+ ....+.++.....+.+++.|++++ .+..+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-~~i~-~~~~~~~~~~~~~~~~~~~gv~~~-~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-YGIP-SYRLPDEALDKDIAFIEALGVKIH-LNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-ecCC-cccCCHHHHHHHHHHHHHCCcEEE-CCCEe
Confidence 34678999999999999999999999999999999988766421 1111 111223444555677888897753 34443
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcC-
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS- 211 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (485)
. .+ +.... ....||+||+|||+. ++.+++||.+ .+++. +..+...+.+.+....
T Consensus 357 ~-~~-----~~~~~-----------~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~------a~~~l~~~~~~~~~~~~ 413 (604)
T PRK13984 357 G-KD-----IPLEE-----------LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQ------ALPLLREIRDYLRGEGP 413 (604)
T ss_pred C-Cc-----CCHHH-----------HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEe------HHHHHHHHHhhhccCCC
Confidence 1 11 11111 145799999999997 5888999975 33331 2222222222211100
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC--ccccccccHHHHHHHHHHHH
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHILNMFDKRITAFAEEKFS 289 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~--~~~l~~~~~~~~~~~~~~l~ 289 (485)
.+ ..+++|+|||||++|+|+|..+.+++... + ...+|+++... ...++..+.+ + +.+.
T Consensus 414 ~~-------~~~k~VvVIGGG~~g~e~A~~l~r~~~~~----~----g~~~V~v~~~~r~~~~~~~~~~e----~-~~~~ 473 (604)
T PRK13984 414 KP-------KIPRSLVVIGGGNVAMDIARSMARLQKME----Y----GEVNVKVTSLERTFEEMPADMEE----I-EEGL 473 (604)
T ss_pred cC-------CCCCcEEEECCchHHHHHHHHHHhccccc----c----CceEEEEeccccCcccCCCCHHH----H-HHHH
Confidence 01 13579999999999999999998863100 0 12478877432 2223332222 2 2234
Q ss_pred hCCcEEEcCceEEEEeC--CcEEEEEc--------C---------CCeEEEEecCeEEEccCCCCCcchHHHHHHhC--C
Q 011476 290 RDGIDVKLGSMVVKVTD--KEIFTKVR--------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG--Q 348 (485)
Q Consensus 290 ~~gV~v~~~~~v~~v~~--~~v~~~~~--------~---------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g--~ 348 (485)
+.||++++++.++++.. ++++.+.. . +|+..++++|.||+|+| +.|++..|...++ +
T Consensus 474 ~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG--~~p~~~~l~~~~~~~l 551 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG--QAPDYSYLPEELKSKL 551 (604)
T ss_pred HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC--CCCChhhhhhhhccCc
Confidence 67999999999888853 23322111 1 23445699999999999 6888854444433 4
Q ss_pred -CCCCceeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 349 -TNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 349 -~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
..+|.|.||++++| ++|+|||+|||+..+ .+..++.++..+|..
T Consensus 552 ~~~~G~i~vd~~~~T-s~~gVfAaGD~~~~~--~~v~Ai~~G~~AA~~ 596 (604)
T PRK13984 552 EFVRGRILTNEYGQT-SIPWLFAGGDIVHGP--DIIHGVADGYWAAEG 596 (604)
T ss_pred cccCCeEEeCCCCcc-CCCCEEEecCcCCch--HHHHHHHHHHHHHHH
Confidence 25688999999998 999999999999865 357788888776653
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=1.9e-26 Score=255.19 Aligned_cols=288 Identities=14% Similarity=0.122 Sum_probs=192.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCC-CeEEEEEeEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN-VDICFWEAECF 135 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~v~~~~~~v~ 135 (485)
..++|+|||||||||+||.+|++.|++|+|||+.+.+++............+..++...+.+.+..++ +++ +.+++|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v-~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTL-LPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEE-EcCCEEE
Confidence 35799999999999999999999999999999998888754322111111122344444555565554 665 3567888
Q ss_pred EEecCCCEEEEecCC---cc---CCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHh
Q 011476 136 KIDAENKKVYCRSSQ---NT---NLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFE 208 (485)
Q Consensus 136 ~id~~~~~v~~~~~~---~~---~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~ 208 (485)
.++.......+.... .. .........+.||+||||||+.++.+++||++ ++++.........+
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~---------- 310 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLN---------- 310 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHH----------
Confidence 876543222221100 00 00011123689999999999999999999986 55554332221110
Q ss_pred hcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCC-ceEEEEecCccccccccHHHHHHHHHH
Q 011476 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAADHILNMFDKRITAFAEEK 287 (485)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g-~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 287 (485)
.... ..+++++|||+|++|+|+|..|.++ | ..|+++++.+.+ ...+.+.
T Consensus 311 ~~~~--------~~gk~VvViG~G~~g~e~A~~L~~~--------------G~~vV~vv~~~~~~--------~~~l~~~ 360 (985)
T TIGR01372 311 RYGV--------APGKRIVVATNNDSAYRAAADLLAA--------------GIAVVAIIDARADV--------SPEARAE 360 (985)
T ss_pred hhCc--------CCCCeEEEECCCHHHHHHHHHHHHc--------------CCceEEEEccCcch--------hHHHHHH
Confidence 0000 2457999999999999999999987 4 457899877643 2345678
Q ss_pred HHhCCcEEEcCceEEEEeCCc----EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCC----C
Q 011476 288 FSRDGIDVKLGSMVVKVTDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDE----W 359 (485)
Q Consensus 288 l~~~gV~v~~~~~v~~v~~~~----v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~----~ 359 (485)
+++.||++++++.++++.+++ +++.. .+|+..+++||.|+++.| ..|++ +|+..++.. +..|+ +
T Consensus 361 L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G--~~Pnt-~L~~~lg~~----~~~~~~~~~~ 432 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGG--WTPVV-HLFSQRGGK----LAWDAAIAAF 432 (985)
T ss_pred HHHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCC--cCchh-HHHHhcCCC----eeeccccCce
Confidence 899999999999999997643 33332 234444699999999999 78998 788777652 11111 1
Q ss_pred ccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 360 l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
...++.|+||++|||+... .+..++.++..+|..
T Consensus 433 ~~~t~v~gVyaaGD~~g~~--~~~~A~~eG~~Aa~~ 466 (985)
T TIGR01372 433 LPGDAVQGCILAGAANGLF--GLAAALADGAAAGAA 466 (985)
T ss_pred ecCCCCCCeEEeeccCCcc--CHHHHHHHHHHHHHH
Confidence 1123799999999999764 466677777766543
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=1e-26 Score=244.29 Aligned_cols=280 Identities=18% Similarity=0.220 Sum_probs=187.7
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
....++|+|||+||+||++|..|+..|++|+|+|+.+.+++.. ...++...+ +.++.....+.+.+.|+++. .+..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~~-~~~~~~~~l~~~~~~Gv~~~-~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-RYGIPAYRL-PREVLDAEIQRILDLGVEVR-LGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-eecCCCccC-CHHHHHHHHHHHHHCCCEEE-eCCEE
Confidence 3567899999999999999999999999999999998887642 222222222 23444444556777887753 33333
Q ss_pred -EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC-CCCCCCCCCC-ccccccChhHHHHHHHHHHHHHhhcC
Q 011476 135 -FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKAS 211 (485)
Q Consensus 135 -~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (485)
.++.. .. ....||+||+|||+.+ ..+.++|.+. +++. +..+...... ..
T Consensus 211 ~~~~~~-------~~-----------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~------~~~~l~~~~~----~~ 262 (564)
T PRK12771 211 GEDITL-------EQ-----------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLD------AVDFLRAVGE----GE 262 (564)
T ss_pred CCcCCH-------HH-----------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEE------HHHHHHHhhc----cC
Confidence 11111 00 0235999999999975 5567888642 2221 1111111110 00
Q ss_pred CCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc-cccccHHHHHHHHHHHHh
Q 011476 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSR 290 (485)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~l~~ 290 (485)
. ...+++++|||||.++++++..+.+++ ..+|+++++.+.. ++..+.++ +.+.+
T Consensus 263 ~-------~~~gk~v~ViGgg~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~ 317 (564)
T PRK12771 263 P-------PFLGKRVVVIGGGNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALR 317 (564)
T ss_pred C-------cCCCCCEEEECChHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHH
Confidence 0 124679999999999999999888873 2579999987642 34433332 34566
Q ss_pred CCcEEEcCceEEEEeCC--c---EEEEEc------C-------CCeEEEEecCeEEEccCCCCCcchHHHHHH-hCC-CC
Q 011476 291 DGIDVKLGSMVVKVTDK--E---IFTKVR------G-------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ-TN 350 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~--~---v~~~~~------~-------~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~-~g~-~~ 350 (485)
.||++++++.+.++..+ + +++... . +|++.++++|.||+|+| +.|+. .++++ .++ +.
T Consensus 318 ~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G--~~p~~-~~~~~~~gl~~~ 394 (564)
T PRK12771 318 EGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG--QDIDS-AGLESVPGVEVG 394 (564)
T ss_pred cCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC--CCCch-hhhhhccCcccC
Confidence 89999999999999643 2 121111 1 34556799999999999 67776 55554 455 56
Q ss_pred CCceeeCC-CccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 351 RRALATDE-WLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 351 ~g~i~vd~-~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
+|.|.||+ +++| +.|+|||+|||+..+. .+..++.++..+|..
T Consensus 395 ~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~~-~v~~Av~~G~~aA~~ 438 (564)
T PRK12771 395 RGVVQVDPNFMMT-GRPGVFAGGDMVPGPR-TVTTAIGHGKKAARN 438 (564)
T ss_pred CCCEEeCCCCccC-CCCCEEeccCcCCCch-HHHHHHHHHHHHHHH
Confidence 78999998 5676 9999999999987543 477888888776653
No 75
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.94 E-value=5.3e-25 Score=223.99 Aligned_cols=267 Identities=27% Similarity=0.372 Sum_probs=210.7
Q ss_pred EEEECCcHHHHHHHHhcCC--CCCcEEEEcCCCCccc--CCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 61 VVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF--TPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 61 vvIIG~G~aGl~aA~~L~~--~g~~V~lie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
++|||+|++|+++|..|.+ ...+++++..++...+ .++...+..+......+..... ...+.++++ ...++|..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDV-RTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEE-eeCCEEEE
Confidence 5899999999999998874 5667887776655444 3455555555544444444333 224557666 46788999
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (485)
+|+..+.+.+.++ .+.||+|++|||++|+.++ +.. ...+.++..+++..+......
T Consensus 79 id~~~~~v~~~~g-----------~~~yd~LvlatGa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------- 135 (415)
T COG0446 79 IDPENKVVLLDDG-----------EIEYDYLVLATGARPRPPP--ISDWEGVVTLRLREDAEALKGGAEP---------- 135 (415)
T ss_pred ecCCCCEEEECCC-----------cccccEEEEcCCCcccCCC--ccccCceEEECCHHHHHHHHHHHhc----------
Confidence 9999999988754 7899999999999998877 333 567888999888888776531
Q ss_pred CHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccccc-HHHHHHHHHHHHhCCcE
Q 011476 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD-KRITAFAEEKFSRDGID 294 (485)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~-~~~~~~~~~~l~~~gV~ 294 (485)
.++++|||+|++|+|+|..+.+. |.+|++++..+++++.+. ++..+.+.+.+++.||+
T Consensus 136 -------~~~v~vvG~G~~gle~A~~~~~~--------------G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 194 (415)
T COG0446 136 -------PKDVVVVGAGPIGLEAAEAAAKR--------------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVE 194 (415)
T ss_pred -------cCeEEEECCcHHHHHHHHHHHHc--------------CCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcE
Confidence 35999999999999999999997 799999999999998877 89999999999999999
Q ss_pred EEcCceEEEEeCCc--EEE--EEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC--C-CCCCceeeCCCccccC-CC
Q 011476 295 VKLGSMVVKVTDKE--IFT--KVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG--Q-TNRRALATDEWLRVEG-SD 366 (485)
Q Consensus 295 v~~~~~v~~v~~~~--v~~--~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g--~-~~~g~i~vd~~l~t~~-~~ 366 (485)
+++++.+.+|+.+. ... ....++.. +++|.+++++| ..|++ .+....+ . ..+|+|.||+++++ + .+
T Consensus 195 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g--~~p~~-~l~~~~~~~~~~~~g~i~v~~~~~~-~~~~ 268 (415)
T COG0446 195 LLLGTKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPG--ERPNV-VLANDALPGLALAGGAVLVDERGGT-SKDP 268 (415)
T ss_pred EEeCCceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeec--ccccH-HHHhhCccceeccCCCEEEcccccc-CCCC
Confidence 99999999998653 221 22245554 99999999999 68886 6777765 4 56788999999998 6 89
Q ss_pred CeEEeccccCCCC
Q 011476 367 SIYALGDCATVNQ 379 (485)
Q Consensus 367 ~Vya~GD~~~~~~ 379 (485)
+|||+|||+..+.
T Consensus 269 ~v~a~GD~~~~~~ 281 (415)
T COG0446 269 DVYAAGDVAEIPA 281 (415)
T ss_pred CEEeccceEeeec
Confidence 9999999988754
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=2.3e-23 Score=212.00 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=172.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcc-----------------------------------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP----------------------------------- 100 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~----------------------------------- 100 (485)
...++|+|||||+|||+||++|.+.|++|+|+|+++..|+.....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 346899999999999999999999999999999998877643210
Q ss_pred --cccc-C-----------cccccccccchHHHHhhCCCe--EEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeec
Q 011476 101 --SVTC-G-----------TVEARSIVEPVRNIVRKKNVD--ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDY 164 (485)
Q Consensus 101 --~~~~-~-----------~~~~~~~~~~~~~~~~~~gv~--v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~y 164 (485)
.++. . .....++.++++.+.+.+++. ++ ++++|+.|++.++.+.+.... .++...+..|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~-~~t~V~~V~~~~~~w~V~~~~----~~~~~~~~~~ 162 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVR-FETEVVRVEPVDGKWRVQSKN----SGGFSKDEIF 162 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEE-ecCEEEEEeecCCeEEEEEEc----CCCceEEEEc
Confidence 0000 0 001134666677888888876 53 688999999876665554321 0111235689
Q ss_pred CEEEEccC--CCCCCCCCCCCCC--c-cccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHH
Q 011476 165 DYLVIAMG--ARANTFNTPGVEE--N-CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (485)
Q Consensus 165 d~lviAtG--~~~~~~~i~G~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A 239 (485)
|+||+||| +.|+.|.+||.+. + ....+...+ .+..++|+|+|||+|.+|+|+|
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~----------------------~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRV----------------------PDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEecccCC----------------------ccccCCCEEEEECCCcCHHHHH
Confidence 99999999 6799999999752 1 111111110 0114678999999999999999
Q ss_pred HHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc-EEEEEcCCCe
Q 011476 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGE 318 (485)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~-v~~~~~~~G~ 318 (485)
..|... +.+|+++.|+..+.. ...+.....++..+..|..+.+++ +.+ .||+
T Consensus 221 ~~L~~~--------------a~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g~V~f---~DG~ 273 (461)
T PLN02172 221 RDIAKV--------------AKEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDGSIVF---KNGK 273 (461)
T ss_pred HHHHHh--------------CCeEEEEEeeccccc----------cccCcCCCCceEECCcccceecCCeEEE---CCCC
Confidence 999987 579999998764311 011112234455666777665443 333 4687
Q ss_pred EEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCc------c--ccC-CCCeEEeccccCCCCcch
Q 011476 319 TSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWL------R--VEG-SDSIYALGDCATVNQRRV 382 (485)
Q Consensus 319 ~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l------~--t~~-~~~Vya~GD~~~~~~~~~ 382 (485)
. +++|.||+||| ..++. .|++.. +.+.+|++. . ... .|+++.+|=+.......+
T Consensus 274 ~--~~~D~Ii~~TG--y~~~~-pfL~~~-----~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~ 336 (461)
T PLN02172 274 V--VYADTIVHCTG--YKYHF-PFLETN-----GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVM 336 (461)
T ss_pred C--ccCCEEEECCc--CCccc-cccCcc-----cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchh
Confidence 5 88999999999 56776 454433 344444321 1 112 489999997644433333
No 77
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.91 E-value=1e-24 Score=224.86 Aligned_cols=322 Identities=17% Similarity=0.198 Sum_probs=194.6
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHH
Q 011476 41 NASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIV 120 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (485)
......|..+-.|...+.++|.|||+|||||+||-+|.+.||.|+|+|+.+..|+ .+.++++.-.++. -++++-..++
T Consensus 1768 ~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg-ll~ygipnmkldk-~vv~rrv~ll 1845 (2142)
T KOG0399|consen 1768 KAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG-LLMYGIPNMKLDK-FVVQRRVDLL 1845 (2142)
T ss_pred HHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc-eeeecCCccchhH-HHHHHHHHHH
Confidence 3334556666677778899999999999999999999999999999999999987 3445554444444 3666777888
Q ss_pred hhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHH
Q 011476 121 RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQR 198 (485)
Q Consensus 121 ~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~ 198 (485)
.+.||++ +.++++ ++.+.++. ..-.+|++|+|+|+ .|+.+++||.+ .+++ -+.+
T Consensus 1846 ~~egi~f-~tn~ei------gk~vs~d~-----------l~~~~daiv~a~gst~prdlpv~grd~kgv~------fame 1901 (2142)
T KOG0399|consen 1846 EQEGIRF-VTNTEI------GKHVSLDE-----------LKKENDAIVLATGSTTPRDLPVPGRDLKGVH------FAME 1901 (2142)
T ss_pred HhhCceE-Eeeccc------cccccHHH-----------HhhccCeEEEEeCCCCCcCCCCCCccccccH------HHHH
Confidence 8889775 233332 22333221 15579999999997 58999999987 4443 3444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHh---------------hCcCCCCCceE
Q 011476 199 IRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK---------------LYPKVKDSVKI 263 (485)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~---------------~~p~~~~g~~V 263 (485)
+.+.....+-...+. ......++|+|+|||||.+|-+|...-.+++...... .||+++.-.+|
T Consensus 1902 ~l~~ntk~lld~~~d--~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrv 1979 (2142)
T KOG0399|consen 1902 FLEKNTKSLLDSVLD--GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRV 1979 (2142)
T ss_pred HHHHhHHhhhccccc--cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEe
Confidence 433332222111110 1112357899999999999999998888876431111 11221111111
Q ss_pred EEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--C---CcEEEEEcCCCeEEEEecCeEEEccCCCCCcc
Q 011476 264 TLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--D---KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (485)
Q Consensus 264 tlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~---~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (485)
..-+..-.-.-.-|+.....+.+.|....=..+++-+.++|+ . +...... .+++++.++||+||+|-|+ .-|.
T Consensus 1980 dygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e-i~~see~~eadlv~lamgf-~gpe 2057 (2142)
T KOG0399|consen 1980 DYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE-INNSEEIIEADLVILAMGF-VGPE 2057 (2142)
T ss_pred ecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE-cCCcceeeecceeeeeccc-cCcc
Confidence 000000000000000000111111111100111222233332 1 1133333 4566667999999999997 4454
Q ss_pred hHHHHHHhCC--CCCCceeeC-CCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 339 IKDFMKQVGQ--TNRRALATD-EWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 339 ~~~l~~~~g~--~~~g~i~vd-~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
. .+.+++++ +.++.|.+. +.+.+ ++++|||+|||-.+ +..++++++++..+|..
T Consensus 2058 ~-~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg-qslvvwai~egrq~a~~ 2114 (2142)
T KOG0399|consen 2058 K-SVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG-QSLVVWAIQEGRQAARQ 2114 (2142)
T ss_pred h-hhhhhcCcccCccccccCCCccccc-cccceeecccccCC-ceEEEEEehhhhHHHHH
Confidence 4 66888888 566667754 34666 89999999999875 56688999998887753
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-23 Score=195.06 Aligned_cols=279 Identities=19% Similarity=0.333 Sum_probs=209.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcC--CCCCcEEEEcCCCCcccC--CCcccc---ccCc------c-----cccccc----
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFT--PLLPSV---TCGT------V-----EARSIV---- 113 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~--~~g~~V~lie~~~~~~~~--~~~~~~---~~~~------~-----~~~~~~---- 113 (485)
+.....+|||+|.+..+++..+. +.+.+|.+|+.++.+.|+ |+...+ .... + ..++++
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 34457899999999998887776 678899999988887774 443221 1000 0 011222
Q ss_pred ---cchHHHH--hhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCC-CCC----
Q 011476 114 ---EPVRNIV--RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT-PGV---- 183 (485)
Q Consensus 114 ---~~~~~~~--~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i-~G~---- 183 (485)
...+.+- ..-||-+ .....|..||...+.|.+.+|. +|.||+++||||.+|+..++ ...
T Consensus 256 ~FfvspeDLp~~~nGGvAv-l~G~kvvkid~~d~~V~LnDG~----------~I~YdkcLIATG~~Pk~l~~~~~A~~ev 324 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAV-LRGRKVVKIDEEDKKVILNDGT----------TIGYDKCLIATGVRPKKLQVFEEASEEV 324 (659)
T ss_pred cceeChhHCcccccCceEE-EeccceEEeecccCeEEecCCc----------EeehhheeeecCcCcccchhhhhcCHHh
Confidence 1112211 1235444 3456789999999999999987 99999999999999976643 221
Q ss_pred CCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceE
Q 011476 184 EENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKI 263 (485)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~V 263 (485)
.+.+..++...|+..+.+.+. ..++|.|||+|..|.|+|+.|.+.... .|.+|
T Consensus 325 k~kit~fr~p~DF~rlek~~a-----------------ek~siTIiGnGflgSELacsl~rk~r~----------~g~eV 377 (659)
T KOG1346|consen 325 KQKITYFRYPADFKRLEKGLA-----------------EKQSITIIGNGFLGSELACSLKRKYRN----------EGVEV 377 (659)
T ss_pred hhheeEEecchHHHHHHHhhh-----------------hcceEEEEcCcchhhhHHHHHHHhhhc----------cCcEE
Confidence 245667788888888877763 236999999999999999999987432 47888
Q ss_pred EEEecCccccc-cccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcchH
Q 011476 264 TLLEAADHILN-MFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (485)
Q Consensus 264 tlv~~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (485)
+-+......|. -+++.++++..+.+++.||.++.+..|.++... .+.+. ++||.+ +..|+|++|+| -.||+
T Consensus 378 ~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lk-L~dG~~--l~tD~vVvavG--~ePN~- 451 (659)
T KOG1346|consen 378 HQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLK-LSDGSE--LRTDLVVVAVG--EEPNS- 451 (659)
T ss_pred EEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEE-ecCCCe--eeeeeEEEEec--CCCch-
Confidence 87766555444 367889999999999999999999999988643 45554 478987 99999999999 78999
Q ss_pred HHHHHhCC--C-CCCceeeCCCccccCCCCeEEeccccCCCCc
Q 011476 341 DFMKQVGQ--T-NRRALATDEWLRVEGSDSIYALGDCATVNQR 380 (485)
Q Consensus 341 ~l~~~~g~--~-~~g~i~vd~~l~t~~~~~Vya~GD~~~~~~~ 380 (485)
+|++..|+ + .-|++.||..|+. ..|||++||++.....
T Consensus 452 ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~ 492 (659)
T KOG1346|consen 452 ELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDG 492 (659)
T ss_pred hhcccccceeecccCcEEeeheeec--ccceeeecchhhhhcc
Confidence 88888887 3 4589999999986 7899999999887554
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=210.95 Aligned_cols=300 Identities=16% Similarity=0.155 Sum_probs=203.3
Q ss_pred CCCCCCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEE
Q 011476 50 APPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICF 129 (485)
Q Consensus 50 ~~~~~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 129 (485)
...+...+.++|+||||||||++||..|++.|++||++|+.+..++. +.+. .+....+.++.+...+++.+.|++++
T Consensus 115 ~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~kl~k~i~d~~i~~l~~~Gv~~~- 191 (457)
T COG0493 115 GELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDFKLPKDILDRRLELLERSGVEFK- 191 (457)
T ss_pred CCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee-EEec-CchhhccchHHHHHHHHHHHcCeEEE-
Confidence 33444556699999999999999999999999999999999988873 3333 33334445888889999999997763
Q ss_pred EEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-CccccccChhHHHHHHHHHHHHH
Q 011476 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESF 207 (485)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~ 207 (485)
.++++ +. .++++.- .-.||++++|||+ .|+..++||.+ ++++ .+..+...+....
T Consensus 192 ~~~~v-G~-----~it~~~L-----------~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~------~A~dfL~~~~~~~ 248 (457)
T COG0493 192 LNVRV-GR-----DITLEEL-----------LKEYDAVFLATGAGKPRPLDIPGEDAKGVA------FALDFLTRLNKEV 248 (457)
T ss_pred EcceE-CC-----cCCHHHH-----------HHhhCEEEEeccccCCCCCCCCCcCCCcch------HHHHHHHHHHHHH
Confidence 34433 11 2222211 3457999999998 47888999986 3433 3444433332211
Q ss_pred hhcCCC--CCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc--cccccHHHHHH
Q 011476 208 EKASLP--NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI--LNMFDKRITAF 283 (485)
Q Consensus 208 ~~~~~~--~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~--l~~~~~~~~~~ 283 (485)
.. ..+ ..+. ..+|+|+|||||.|+++++....+++. .+|+.+++...- .+..+......
T Consensus 249 ~~-~~~~~~~~~---~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~ 311 (457)
T COG0493 249 LG-DFAEDRTPP---AKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQL 311 (457)
T ss_pred hc-ccccccCCC---CCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhh
Confidence 11 111 1111 345899999999999999999888752 378877533221 12222333555
Q ss_pred HHHHHHhCCcEEEcCceEEEEeC---CcEEEEEc-------------------CCCeEEEEecCeEEEccCCCCCcchHH
Q 011476 284 AEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVR-------------------GNGETSSMPYGMVVWSTGIAPHAIIKD 341 (485)
Q Consensus 284 ~~~~l~~~gV~v~~~~~v~~v~~---~~v~~~~~-------------------~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (485)
..+...++|+.+++.....++.. +++..... ..|++..+++|+|+.|+|+...+.. .
T Consensus 312 ~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~-~ 390 (457)
T COG0493 312 EVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATD-G 390 (457)
T ss_pred hhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccc-c
Confidence 66888889999999999888864 22331110 1366678999999999996433322 1
Q ss_pred HHH--HhCCCCCCceeeCCCc-cccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 342 FMK--QVGQTNRRALATDEWL-RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 342 l~~--~~g~~~~g~i~vd~~l-~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
... .+..+.+|.|.+|+.+ +| +.|++||.|||..+ ...++.++.++..+|..
T Consensus 391 ~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g-~~~vv~ai~eGr~aak~ 445 (457)
T COG0493 391 LLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG-AALVVWAIAEGREAAKA 445 (457)
T ss_pred cccccccccCCCCceecccccccc-cCCCeeeCceeccc-hhhhhhHHhhchHHHHh
Confidence 222 2334788999999998 76 99999999999986 44578888887766543
No 80
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.90 E-value=5.5e-23 Score=187.80 Aligned_cols=298 Identities=15% Similarity=0.243 Sum_probs=204.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCC--CCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
.+..+|+|||||.+|+++|..+.+ ..-+|.|+|+.+++.|+|.+.-+..|....+.-......++.. +.. |++..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~-~a~--wi~ek 113 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK-GAT--WIKEK 113 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC-CcH--HHHHH
Confidence 457899999999999999988873 2347999999999999999888877765544444444444443 323 67788
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCC-----CccccccChhHHHHHHHHHHHHHh
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-----ENCNFLKEVEDAQRIRRNVIESFE 208 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 208 (485)
|...+|+.++|.+++|. +|.||++|||+|.+-+.-.|+|.. +++....+.....+..+.+.+.-.
T Consensus 114 v~~f~P~~N~v~t~gg~----------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~ 183 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGE----------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKK 183 (446)
T ss_pred HHhcCCCcCeEEccCCc----------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccC
Confidence 99999999999988776 999999999999998777777763 355555566556666665544333
Q ss_pred hcCCCCCCHHHHhhcccEEEECCChhHHHHHHHH-HHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHH
Q 011476 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAEL-HDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287 (485)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l-~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 287 (485)
...+-+.|. -.+=..|+-.-.+-++... .+.+. +...++.....-+.++.- ....+.+++.
T Consensus 184 GNAIfTfPn------tpiKCAGAPQKi~yise~y~Rk~gv----------Rd~a~iiy~Tsl~~iFgV--k~Y~~AL~k~ 245 (446)
T KOG3851|consen 184 GNAIFTFPN------TPIKCAGAPQKIMYISESYFRKRGV----------RDNANIIYNTSLPTIFGV--KHYADALEKV 245 (446)
T ss_pred CceEEecCC------CccccCCCchhhhhhhHHHHHHhCc----------cccccEEEecCccceecH--HHHHHHHHHH
Confidence 322222221 0122233333333333322 22221 223344444343443321 3567888899
Q ss_pred HHhCCcEEEcCceEEEEeCCc--EEEEEcCC-CeEEEEecCeEEEccCCCCCcchHHHHHHhCC-CCCCceeeCC-Cccc
Q 011476 288 FSRDGIDVKLGSMVVKVTDKE--IFTKVRGN-GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE-WLRV 362 (485)
Q Consensus 288 l~~~gV~v~~~~~v~~v~~~~--v~~~~~~~-G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~-~~~g~i~vd~-~l~t 362 (485)
.++++|++-+...+.+|..+. .++..+.+ |..++++++++-+.... +.| +.+....+ +..|++.||+ ++|+
T Consensus 246 ~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppm-s~p---e~l~~s~~adktGfvdVD~~TlQs 321 (446)
T KOG3851|consen 246 IQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPM-STP---EVLANSDLADKTGFVDVDQSTLQS 321 (446)
T ss_pred HHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCC-CCh---hhhhcCcccCcccceecChhhhcc
Confidence 999999999999999997643 34444433 88888999999876553 233 66777777 7889999996 6998
Q ss_pred cCCCCeEEeccccCCCCcchHHHHHH
Q 011476 363 EGSDSIYALGDCATVNQRRVMEDIAA 388 (485)
Q Consensus 363 ~~~~~Vya~GD~~~~~~~~~~~~~~~ 388 (485)
+..||||++|||.+.|..+.++++.+
T Consensus 322 ~kypNVFgiGDc~n~PnsKTaAAvaa 347 (446)
T KOG3851|consen 322 KKYPNVFGIGDCMNLPNSKTAAAVAA 347 (446)
T ss_pred ccCCCceeeccccCCCchhhHHHHHh
Confidence 89999999999999988877666654
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.89 E-value=3e-22 Score=212.32 Aligned_cols=288 Identities=16% Similarity=0.185 Sum_probs=163.3
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc--------------cCCCccccc---c-Cccc------
Q 011476 53 EMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA--------------FTPLLPSVT---C-GTVE------ 108 (485)
Q Consensus 53 ~~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~--------------~~~~~~~~~---~-~~~~------ 108 (485)
+...++++|+||||||||++||++|++.||+|+|+|+.+..+ |.+++.... . |...
T Consensus 378 ~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R 457 (1028)
T PRK06567 378 PKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR 457 (1028)
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc
Confidence 344678999999999999999999999999999999864211 112221111 1 1111
Q ss_pred -ccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC-CCCCCCCCCCC-C
Q 011476 109 -ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-E 185 (485)
Q Consensus 109 -~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~G~~-~ 185 (485)
+++.....+.++ ..++++++..+...+.+ ++.++- ....||+|+||||+ .|+.+++||.+ .
T Consensus 458 ~~k~~l~~i~~il-~~g~~v~~~~gv~lG~d-----it~edl----------~~~gyDAV~IATGA~kpr~L~IPGeda~ 521 (1028)
T PRK06567 458 WDKNNLDILRLIL-ERNNNFKYYDGVALDFN-----ITKEQA----------FDLGFDHIAFCIGAGQPKVLDIENFEAK 521 (1028)
T ss_pred chHHHHHHHHHHH-hcCCceEEECCeEECcc-----CCHHHH----------hhcCCCEEEEeCCCCCCCCCCCCCccCC
Confidence 111222222222 33555655444332222 222211 15679999999999 69999999976 2
Q ss_pred ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHh--------hHHHHHhhCcC-
Q 011476 186 NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDF--------VDEDLFKLYPK- 256 (485)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~--------~~~~~~~~~p~- 256 (485)
+++ +..++....+.. ..+.....+++ ..+++|+|||||++|+|+|.....+ ..+...+.||.
T Consensus 522 GV~---sA~DfL~~l~~~-~~~~~~~~~~~-----~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~ 592 (1028)
T PRK06567 522 GVK---TASDFLMTLQSG-GAFLKNSNTNM-----VIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEE 592 (1028)
T ss_pred CeE---EHHHHHHHHhhc-ccccccccCcc-----cCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccc
Confidence 333 222222111110 00111111111 2357999999999999999965542 01111111111
Q ss_pred ---------------------------C-CCCceEEEEecCccc-cccc---cHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 011476 257 ---------------------------V-KDSVKITLLEAADHI-LNMF---DKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (485)
Q Consensus 257 ---------------------------~-~~g~~Vtlv~~~~~~-l~~~---~~~~~~~~~~~l~~~gV~v~~~~~v~~v 304 (485)
+ ..| .|++++|+..- +|.. .+++ +...++||+|+.+..+.+|
T Consensus 593 d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i 666 (1028)
T PRK06567 593 DKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRI 666 (1028)
T ss_pred cHHHHHHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEE
Confidence 0 012 29999998753 4442 2333 4566779999999999999
Q ss_pred eCC---c---EEEEEc------------CCC-------------eEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCc
Q 011476 305 TDK---E---IFTKVR------------GNG-------------ETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353 (485)
Q Consensus 305 ~~~---~---v~~~~~------------~~G-------------~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~ 353 (485)
..+ . +++... ..+ .+.+|+||.||+|+| ..||+..+
T Consensus 667 ~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G--~~~~~~~~----------- 733 (1028)
T PRK06567 667 NVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG--IENNTQFD----------- 733 (1028)
T ss_pred EecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc--cCCccccc-----------
Confidence 532 2 222211 111 446799999999999 78888321
Q ss_pred eeeCCCccccCCCCeEEeccccCCCCcchHHHHHHHHhhccc
Q 011476 354 LATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADK 395 (485)
Q Consensus 354 i~vd~~l~t~~~~~Vya~GD~~~~~~~~~~~~~~~~~~~a~~ 395 (485)
..+..+-+ +.+++|+. .++.+++++..++..
T Consensus 734 -~~~~s~~~-d~~~~f~G---------tvv~A~as~k~~~~~ 764 (1028)
T PRK06567 734 -EDKYSYFG-DCNPKYSG---------SVVKALASSKEGYDA 764 (1028)
T ss_pred -cccccccc-CCCCcccc---------HHHHHHHHHHhHHHH
Confidence 11112222 56667764 467777776665554
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.83 E-value=1.3e-21 Score=178.79 Aligned_cols=141 Identities=31% Similarity=0.440 Sum_probs=89.5
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC-CCccc-cccCccccccccc-----chHHHHhhCCCeEEEEEe
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT-PLLPS-VTCGTVEARSIVE-----PVRNIVRKKNVDICFWEA 132 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~-~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~gv~v~~~~~ 132 (485)
|||||||||||++||.+|++.+++|+|+|+.+...+. ..++. ............. .+.+.+...++++ .+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEI-RLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEE-EHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEE-eecc
Confidence 7999999999999999999999999999988754442 11111 1111100001110 3333445667665 3678
Q ss_pred EEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHH
Q 011476 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRN 202 (485)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~ 202 (485)
++..++...+.+............++..++.||+||+|||+.|+.|++||.+ .........++..+...
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEE-VAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTT-TECBTTSEEHHHHHHTH
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCc-ccccccccccccccccc
Confidence 8999999888542110000000011235899999999999999999999973 44455666666665554
No 83
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.82 E-value=1.2e-20 Score=168.02 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=168.7
Q ss_pred eEEEECCcHHHHHHHHhcC--CCCCcEEEEcCCCCccc----CCCccc---cccCcccccccccchHHHHhhCCCeEEEE
Q 011476 60 KVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAF----TPLLPS---VTCGTVEARSIVEPVRNIVRKKNVDICFW 130 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~--~~g~~V~lie~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 130 (485)
+.+|||||.||++||.+|+ .+..+|+|+...+..-- .+.... +.....+..++...++.+ +
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~----------~ 70 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRF----------L 70 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHH----------H
Confidence 4789999999999999998 67779999997753211 110000 000000011122222222 2
Q ss_pred EeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhc
Q 011476 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKA 210 (485)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (485)
+. |..++...+.+++++|. ++.|++|+++||.+|... ..|.+..+..+++.+.++.++..+
T Consensus 71 ~~-v~~~~s~ehci~t~~g~----------~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl------- 131 (334)
T KOG2755|consen 71 ND-VVTWDSSEHCIHTQNGE----------KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKL------- 131 (334)
T ss_pred Hh-hhhhccccceEEecCCc----------eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHH-------
Confidence 23 55556667788888765 899999999999999653 344557788888999999888887
Q ss_pred CCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-ccHHHHHHHHHHHH
Q 011476 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFS 289 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~l~ 289 (485)
.+.|.|+|+|.|-+++|.+.++.. .+|++....+.+... +++.+.+.+...+.
T Consensus 132 ----------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~ 185 (334)
T KOG2755|consen 132 ----------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLR 185 (334)
T ss_pred ----------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhh
Confidence 366899999999999999999975 588888888777654 46666666655552
Q ss_pred hC------------CcEEEcCceE-----------------------------------EEE-eCC---cEEEEEcCCCe
Q 011476 290 RD------------GIDVKLGSMV-----------------------------------VKV-TDK---EIFTKVRGNGE 318 (485)
Q Consensus 290 ~~------------gV~v~~~~~v-----------------------------------~~v-~~~---~v~~~~~~~G~ 318 (485)
.. .++...++.- ..+ ++. .+.......|.
T Consensus 186 a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~ 265 (334)
T KOG2755|consen 186 ADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMA 265 (334)
T ss_pred cccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccc
Confidence 11 0111111100 000 000 01111111222
Q ss_pred EEEEecCeEEEccCCCCCcchHHHH-HHhCCCCCCceeeCCCccccCCCCeEEeccccCC
Q 011476 319 TSSMPYGMVVWSTGIAPHAIIKDFM-KQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377 (485)
Q Consensus 319 ~~~i~~D~vi~a~G~~~~p~~~~l~-~~~g~~~~g~i~vd~~l~t~~~~~Vya~GD~~~~ 377 (485)
-..+.||.+++|+| ..||...+. ..+.+.++|+|.||+.|+| +.|+|||+||++..
T Consensus 266 ~~qlt~d~ivSatg--vtpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 266 DNQLTCDFIVSATG--VTPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred cceeeeeEEEeccc--cCcCceEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 22478999999999 578875333 3334478899999999998 99999999997663
No 84
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.82 E-value=4.7e-19 Score=182.77 Aligned_cols=160 Identities=22% Similarity=0.310 Sum_probs=102.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcc------------ccc----------cC---------c
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP------------SVT----------CG---------T 106 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~------------~~~----------~~---------~ 106 (485)
+++|+|||||++||++|+.|.+.|++++++|+++..||..... ... ++ .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999999988754211 000 00 0
Q ss_pred ccccccccchHHHHhhCCCe--EEEEEeEEEEEecCC-----CEEEEecCCccCCCCCceEEeecCEEEEccCC--CCCC
Q 011476 107 VEARSIVEPVRNIVRKKNVD--ICFWEAECFKIDAEN-----KKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANT 177 (485)
Q Consensus 107 ~~~~~~~~~~~~~~~~~gv~--v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~--~~~~ 177 (485)
....++.++++.+.+.+++. ++ ++++|+.+.... ....+.... +++..+..||+||+|||. .|+.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~~~~~fD~VvvatG~~~~P~~ 154 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTEN-----DGKEETEEFDAVVVATGHFSKPNI 154 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETT-----TTEEEEEEECEEEEEE-SSSCESB
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeec-----CCeEEEEEeCeEEEcCCCcCCCCC
Confidence 11235666778888877762 33 578888886532 233443321 333446679999999995 5787
Q ss_pred CC--CCCCCC--c-cccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHh
Q 011476 178 FN--TPGVEE--N-CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDF 245 (485)
Q Consensus 178 ~~--i~G~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~ 245 (485)
|. +||.+. + ++..++.. ..+..++|+|+|||+|.+|+|+|.+|...
T Consensus 155 P~~~~~G~e~F~G~i~HS~~yr----------------------~~~~f~gKrVlVVG~g~Sg~DIa~el~~~ 205 (531)
T PF00743_consen 155 PEPSFPGLEKFKGEIIHSKDYR----------------------DPEPFKGKRVLVVGGGNSGADIAVELSRV 205 (531)
T ss_dssp -----CTGGGHCSEEEEGGG------------------------TGGGGTTSEEEEESSSHHHHHHHHHHTTT
T ss_pred ChhhhhhhhcCCeeEEccccCc----------------------ChhhcCCCEEEEEeCCHhHHHHHHHHHHh
Confidence 74 899762 1 22221111 11236889999999999999999999886
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.75 E-value=1.5e-18 Score=158.89 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=101.8
Q ss_pred EEECCcHHHHHHHHhcCCCCCc-EEEEcCCCCcccCCC---------ccccc---c--------------------Cccc
Q 011476 62 VVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPL---------LPSVT---C--------------------GTVE 108 (485)
Q Consensus 62 vIIG~G~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~---------~~~~~---~--------------------~~~~ 108 (485)
+||||||+||++|.+|.+.|.+ |+|||+++.+|+... .+... . ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999999977665311 11100 0 0111
Q ss_pred ccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCC--CCCCCCCCC-CCC
Q 011476 109 ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPG-VEE 185 (485)
Q Consensus 109 ~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~G-~~~ 185 (485)
..++.++++.+.++++++++ .+++|+++...++...+.... + +.+.+|+||+|||. .|+.|.+|| .+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~-~~~~V~~v~~~~~~w~v~~~~-----~---~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIR-FNTRVESVRRDGDGWTVTTRD-----G---RTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEE-TS--EEEEEEETTTEEEEETT-----S----EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccc-cCCEEEEEEEeccEEEEEEEe-----c---ceeeeeeEEEeeeccCCCCcccccccccc
Confidence 23455667888888898864 678899998776644443322 1 28889999999996 788899999 333
Q ss_pred ccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEE
Q 011476 186 NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITL 265 (485)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtl 265 (485)
..+......+ ....++++|+|||+|.+|+++|..|++. +.+|++
T Consensus 152 ~~~h~~~~~~----------------------~~~~~~k~V~VVG~G~SA~d~a~~l~~~--------------g~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRD----------------------PEDFKGKRVVVVGGGNSAVDIAYALAKA--------------GKSVTL 195 (203)
T ss_dssp EEEEGGG-ST----------------------TGGCTTSEEEEE--SHHHHHHHHHHTTT--------------CSEEEE
T ss_pred ceEehhhcCC----------------------hhhcCCCcEEEEcChHHHHHHHHHHHhh--------------CCEEEE
Confidence 2222221111 0113568999999999999999999986 689999
Q ss_pred EecCccc
Q 011476 266 LEAADHI 272 (485)
Q Consensus 266 v~~~~~~ 272 (485)
+.|++..
T Consensus 196 ~~R~~~~ 202 (203)
T PF13738_consen 196 VTRSPIW 202 (203)
T ss_dssp EESS---
T ss_pred EecCCCC
Confidence 9998753
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.73 E-value=5.1e-17 Score=162.23 Aligned_cols=291 Identities=12% Similarity=0.120 Sum_probs=158.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcC-CCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLN-NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~-~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
..+++|+||||||||++||.+|. ..|++|+|+|+.+.+++. +...+.+.....+.+...+...+...++. |.. .+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL-vR~GVaPdh~~~k~v~~~f~~~~~~~~v~--f~g-nv 112 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL-IRYGVAPDHIHVKNTYKTFDPVFLSPNYR--FFG-NV 112 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE-EEEeCCCCCccHHHHHHHHHHHHhhCCeE--EEe-ee
Confidence 45789999999999999999764 679999999999988874 22334443433345555566666555543 432 11
Q ss_pred EEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCC----------CCC-----CccccccChhHHHHH
Q 011476 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP----------GVE-----ENCNFLKEVEDAQRI 199 (485)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~----------G~~-----~~~~~~~~~~~~~~~ 199 (485)
.+. ..++++. ..-.||+||+|||+.+..++++ |.+ .+++...+. ..+
T Consensus 113 -~VG---~Dvt~ee-----------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~df---V~W 174 (506)
T PTZ00188 113 -HVG---VDLKMEE-----------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDL---IYF 174 (506)
T ss_pred -Eec---CccCHHH-----------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheE---EEe
Confidence 111 1122221 1337999999999986543321 321 122211110 000
Q ss_pred HHHHHHHH---hh-cCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHh-hCcC-------CCCCceEEEEe
Q 011476 200 RRNVIESF---EK-ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK-LYPK-------VKDSVKITLLE 267 (485)
Q Consensus 200 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~-~~p~-------~~~g~~Vtlv~ 267 (485)
.+.-.+.. .. +.++++ ...++++|||.|++++++|+.|..-. +++.+ -.+. -..-.+|+|+-
T Consensus 175 YNg~p~~~~~~~~~ayL~p~-----~~~~~vvVIG~GNVAlDvARiL~~~~-d~L~~TDI~~~aL~~L~~s~v~~V~ivg 248 (506)
T PTZ00188 175 YNNMYNDVRCKAVDNYLNSF-----ENFTTSIIIGNGNVSLDIARILIKSP-DDLSKTDISSDYLKVIKRHNIKHIYIVG 248 (506)
T ss_pred ecCCCCcccccccccccccc-----CCCCcEEEECCCchHHHHHHHHccCH-HHhhcCCCcHHHHHHHHhCCCcEEEEEE
Confidence 00000000 00 011111 13458999999999999999986432 22111 0000 01234688887
Q ss_pred cCcccc--------------cc----c-cHH-----------------------HHHHHHHHHH----------hCCcEE
Q 011476 268 AADHIL--------------NM----F-DKR-----------------------ITAFAEEKFS----------RDGIDV 295 (485)
Q Consensus 268 ~~~~~l--------------~~----~-~~~-----------------------~~~~~~~~l~----------~~gV~v 295 (485)
|+...- +. + +.+ ..+.+.+... .+-+.+
T Consensus 249 RRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l 328 (506)
T PTZ00188 249 RRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEF 328 (506)
T ss_pred ecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEE
Confidence 664210 10 0 000 1112223332 134778
Q ss_pred EcCceEEEEeC--Cc---EEEEEc--------CCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccc
Q 011476 296 KLGSMVVKVTD--KE---IFTKVR--------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRV 362 (485)
Q Consensus 296 ~~~~~v~~v~~--~~---v~~~~~--------~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t 362 (485)
++...+++|.+ +. +.+... .+|+..+++||+|+.|+|++..|.. .+ ..+ +. +... ..++
T Consensus 329 ~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g~----pFd-~~-~~n~-~grv 400 (506)
T PTZ00188 329 IFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-EN----LYN-QS-VQMF-KEDI 400 (506)
T ss_pred EccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-CC----Ccc-cc-CCCC-CCcc
Confidence 88888888863 22 333321 2566678999999999998766644 32 222 11 2211 1121
Q ss_pred -cCCCCeEEeccccCCCCcch
Q 011476 363 -EGSDSIYALGDCATVNQRRV 382 (485)
Q Consensus 363 -~~~~~Vya~GD~~~~~~~~~ 382 (485)
...|++|+.|-+..+|...+
T Consensus 401 ~~~~~g~Y~~GWiKrGP~GvI 421 (506)
T PTZ00188 401 GQHKFAIFKAGWFDKGPKGNI 421 (506)
T ss_pred cCCCCCcEEeeecCcCCCcee
Confidence 13699999999999877644
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.72 E-value=6.8e-17 Score=158.27 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=129.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCCcccCCC--cccccc------Ccc---------------------
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAFTPL--LPSVTC------GTV--------------------- 107 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~~--~~~~~~------~~~--------------------- 107 (485)
.+|+++||.||++|+.|..|...+ .++..+|+++.+.|+|. ++.... ...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 469999999999999999998554 89999999999998762 232110 000
Q ss_pred -----------cccccccchHHHHhhCCCeEEEEEeEEEEEecCCC------EEEEecCCccCCCCCceEEeecCEEEEc
Q 011476 108 -----------EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENK------KVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (485)
Q Consensus 108 -----------~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~------~v~~~~~~~~~~~~~~~~~~~yd~lviA 170 (485)
...++.++++...++.+-.++ +..+|++|++... .|.+++. .++...+.+++||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~-~~~~V~~I~~~~~~~~~~~~V~~~~~------~g~~~~~~ar~vVla 154 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVR-YGSEVTSIEPDDDGDEDLFRVTTRDS------DGDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEE-ESEEEEEEEEEEETTEEEEEEEEEET------TS-EEEEEESEEEE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceE-ECCEEEEEEEecCCCccEEEEEEeec------CCCeeEEEeCeEEEC
Confidence 011222334444455553464 5788999987653 3444321 222358999999999
Q ss_pred cCCCCCCCCCCC-CC--CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhH
Q 011476 171 MGARANTFNTPG-VE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (485)
Q Consensus 171 tG~~~~~~~i~G-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~ 247 (485)
||..|..|..-. .. +.++...+..... .. ....++|+|||||.+|.|++..|.+..
T Consensus 155 ~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~--~~------------------~~~~~~V~VVGgGQSAAEi~~~L~~~~- 213 (341)
T PF13434_consen 155 TGGQPRIPEWFQDLPGSPRVFHSSEYLSRI--DQ------------------SLAGKRVAVVGGGQSAAEIFLDLLRRG- 213 (341)
T ss_dssp ---EE---GGGGGGTT-TTEEEGGGHHHHH--T-----------------------EEEEEE-SSHHHHHHHHHHHHH--
T ss_pred cCCCCCCCcchhhcCCCCCEEEehHhhhcc--cc------------------ccCCCeEEEECCcHhHHHHHHHHHhCC-
Confidence 999888774322 21 3344333222111 00 135679999999999999999999874
Q ss_pred HHHHhhCcCCCCCceEEEEecCcccccc---------ccHHHHHH-------------------------------HHH-
Q 011476 248 EDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAF-------------------------------AEE- 286 (485)
Q Consensus 248 ~~~~~~~p~~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~-------------------------------~~~- 286 (485)
+..+|+++.|++.+.+. ++++..+. +.+
T Consensus 214 -----------~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~ 282 (341)
T PF13434_consen 214 -----------PEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDR 282 (341)
T ss_dssp -----------TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHH
T ss_pred -----------CCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHH
Confidence 23699999999876542 22221111 111
Q ss_pred ----HH-HhCCcEEEcCceEEEEeC--C-c--EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 287 ----KF-SRDGIDVKLGSMVVKVTD--K-E--IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 287 ----~l-~~~gV~v~~~~~v~~v~~--~-~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+ .+..+.++.++.|++++. + + +.+.....|+..++++|.||+|||+
T Consensus 283 lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 283 LYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred HHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 11 233589999999999863 2 4 4445545677778999999999995
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.72 E-value=5e-17 Score=152.58 Aligned_cols=303 Identities=18% Similarity=0.227 Sum_probs=175.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCC--CCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.++|.|||+||||+.+|.+|.+ .+.+|+|+|+.+...+ ...+++.+...+.......+.+.++... +.|... +
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG-LvRyGVAPDHpEvKnvintFt~~aE~~r--fsf~gN-v- 94 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG-LVRYGVAPDHPEVKNVINTFTKTAEHER--FSFFGN-V- 94 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc-eeeeccCCCCcchhhHHHHHHHHhhccc--eEEEec-c-
Confidence 4599999999999999999875 5789999999986554 2344445555555566666777766654 333322 1
Q ss_pred EEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCC-CCCCCCCCCC-CccccccChhHHHHHHHHHHHHHhhcCCC
Q 011476 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (485)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~-~~~~~i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (485)
.| ++.+.++. .+-.||++|||+|+. ++.++|||.+ .+++..+ .+..+.+. +|
T Consensus 95 ~v---G~dvsl~e-----------L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sar---efv~Wyng---------~P 148 (468)
T KOG1800|consen 95 KV---GRDVSLKE-----------LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAR---EFVGWYNG---------LP 148 (468)
T ss_pred ee---cccccHHH-----------HhhcccEEEEEecCCCCcccCCCCcccccceehh---hhhhhccC---------CC
Confidence 11 12233332 145699999999985 6889999986 4444322 22222221 22
Q ss_pred CCCH-HHHhhcccEEEECCChhHHHHHHHHHHhhHHHH-HhhCcC-------CCCCceEEEEecCcccccccc-------
Q 011476 214 NLSD-EERKRILHFVIVGGGPTGVEFAAELHDFVDEDL-FKLYPK-------VKDSVKITLLEAADHILNMFD------- 277 (485)
Q Consensus 214 ~~~~-~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~-~~~~p~-------~~~g~~Vtlv~~~~~~l~~~~------- 277 (485)
.... +..-.+.+|+|||.|++++++|+.|...-.... ..-+|. -.+-.+|+|+.|+.-+-..|.
T Consensus 149 ~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~ 228 (468)
T KOG1800|consen 149 ENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREV 228 (468)
T ss_pred cccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHH
Confidence 1110 001236799999999999999999976533222 112231 234567899987753211110
Q ss_pred -------------------------------HHHHHHHHHHHHhC---------CcE---EEcCceEEEEeCC-----cE
Q 011476 278 -------------------------------KRITAFAEEKFSRD---------GID---VKLGSMVVKVTDK-----EI 309 (485)
Q Consensus 278 -------------------------------~~~~~~~~~~l~~~---------gV~---v~~~~~v~~v~~~-----~v 309 (485)
.++.+.+.+.+.++ +.+ +.+.-.+.+|.++ ++
T Consensus 229 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~ 308 (468)
T KOG1800|consen 229 LELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGV 308 (468)
T ss_pred hCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccce
Confidence 11222222222220 111 1111112222211 11
Q ss_pred EEE--------EcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCcccc---CCCCeEEeccccCCC
Q 011476 310 FTK--------VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVE---GSDSIYALGDCATVN 378 (485)
Q Consensus 310 ~~~--------~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~---~~~~Vya~GD~~~~~ 378 (485)
.+. ....|..++++|++++.++|.+..|... .++.+.+.++.-|.+.+.. -.|++|+.|-|..+|
T Consensus 309 ~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~----gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP 384 (468)
T KOG1800|consen 309 RFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS----GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGP 384 (468)
T ss_pred EEEeeeehhhcccccCceEeeccceeEeeeeecccccCC----CCCcccccCcccCCCceEEeeccCCceEEEeeeccCC
Confidence 111 1134666789999999999987776542 3333444445544444431 259999999999998
Q ss_pred CcchHHHHHHHHhhccc
Q 011476 379 QRRVMEDIAAIFSKADK 395 (485)
Q Consensus 379 ~~~~~~~~~~~~~~a~~ 395 (485)
...++..+...+..++.
T Consensus 385 ~GvIattm~dAf~v~d~ 401 (468)
T KOG1800|consen 385 TGVIATTMQDAFEVADT 401 (468)
T ss_pred cceeeehhhhHHHHHHH
Confidence 88777777777665543
No 89
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.68 E-value=8e-16 Score=156.24 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=117.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCc-EEEEcCCCCcccCCCccc-----------------ccc---Cccccc-ccc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPLLPS-----------------VTC---GTVEAR-SIV 113 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~~-----------------~~~---~~~~~~-~~~ 113 (485)
.+..+|+|||||++||++|++|.+.|.+ ++|+|+++..|+++-... .+. ...... .+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4568999999999999999999999999 999999987775432111 111 111111 245
Q ss_pred cchHHHHhhCCCeEEE-EEeEEEEEecCC--CEEEEecCCccCCCCCceEEeecCEEEEccCC--CCCCCCCCCCCCccc
Q 011476 114 EPVRNIVRKKNVDICF-WEAECFKIDAEN--KKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPGVEENCN 188 (485)
Q Consensus 114 ~~~~~~~~~~gv~v~~-~~~~v~~id~~~--~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~G~~~~~~ 188 (485)
+.+...++++++..++ ++..|..++++. +..++.... +.. .++.+|+||+|||- .|+.|.|+|.+..-.
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~-----~~~-~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD-----GGT-GELTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC-----CCe-eeEecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 5667777888764322 233444454443 344433322 111 12779999999994 689999999874211
Q ss_pred cccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEec
Q 011476 189 FLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEA 268 (485)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~ 268 (485)
..- ++. ..+ +.+..+||+|+|||+|.+|+++|.+|.+. +.+||+++|
T Consensus 160 ~~~---HS~-------------~~~---~~~~~~GKrV~VIG~GaSA~di~~~l~~~--------------ga~vt~~qR 206 (443)
T COG2072 160 RIL---HSA-------------DWP---NPEDLRGKRVLVIGAGASAVDIAPELAEV--------------GASVTLSQR 206 (443)
T ss_pred eEE---chh-------------cCC---CccccCCCeEEEECCCccHHHHHHHHHhc--------------CCeeEEEec
Confidence 110 111 111 11225889999999999999999999996 589999999
Q ss_pred Cccc
Q 011476 269 ADHI 272 (485)
Q Consensus 269 ~~~~ 272 (485)
++..
T Consensus 207 s~~~ 210 (443)
T COG2072 207 SPPH 210 (443)
T ss_pred CCCc
Confidence 8754
No 90
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=9e-16 Score=153.66 Aligned_cols=220 Identities=16% Similarity=0.208 Sum_probs=138.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcc--------c-c-----------------ccC----
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP--------S-V-----------------TCG---- 105 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~--------~-~-----------------~~~---- 105 (485)
.+.++|+|||||+|||++|+.|.+.|++++++|+.+.+|+..... . + +..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 347899999999999999999999999999999999888743222 1 0 000
Q ss_pred -c-ccccccccchHHHHhhCCCe--EEEEEeEEEEEecCC-CE--EEEecCCccCCCCCceEEeecCEEEEccCCC--CC
Q 011476 106 -T-VEARSIVEPVRNIVRKKNVD--ICFWEAECFKIDAEN-KK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR--AN 176 (485)
Q Consensus 106 -~-~~~~~~~~~~~~~~~~~gv~--v~~~~~~v~~id~~~-~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~--~~ 176 (485)
. .+.+++.++++.+.+..++. ++ .+.++..++... +. |...+.. +. ....-||.|++|||-. |+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~-f~~~v~~v~~~~~gkW~V~~~~~~-----~~-~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMIN-FNTEVVRVDSIDKGKWRVTTKDNG-----TQ-IEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheE-ecccEEEEeeccCCceeEEEecCC-----cc-eeEEEeeEEEEcccCcCCCC
Confidence 0 11235667788888888753 32 356677777665 33 4433322 11 3478899999999986 88
Q ss_pred CCCCCCCC----Cc-cccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHHHHH
Q 011476 177 TFNTPGVE----EN-CNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (485)
Q Consensus 177 ~~~i~G~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~ 251 (485)
.|.+||.. ++ .+..++. + ..+...+|+|+|||+|++|+|++..++..
T Consensus 157 ~P~~~g~~~~~f~G~~iHS~~Y------k----------------~~e~f~~k~VlVIG~g~SG~DIs~d~~~~------ 208 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHSHDY------K----------------SPEKFRDKVVLVVGCGNSGMDISLDLLRV------ 208 (448)
T ss_pred CCcCCCCchhhcCCcceehhhc------c----------------CcccccCceEEEECCCccHHHHHHHHHHh------
Confidence 88888832 11 1111110 0 01225678999999999999999998886
Q ss_pred hhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEcc
Q 011476 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWST 331 (485)
Q Consensus 252 ~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (485)
..+|++..+ ...... .. ......++-.+.. +..+.+++..+.. ++.. ..+|.+|+||
T Consensus 209 --------ak~v~~~~~-~~~~~~---~~-----~~~~~~~~~~~~~--i~~~~e~~~~~~~--~~~~--~~~D~ii~ct 265 (448)
T KOG1399|consen 209 --------AKEVHLSVV-SPKVHV---EP-----PEILGENLWQVPS--IKSFTEDGSVFEK--GGPV--ERVDRIIFCT 265 (448)
T ss_pred --------ccCcceeee-cccccc---cc-----cceeecceEEccc--cccccCcceEEEc--Ccee--EEeeeEEEee
Confidence 346666644 100000 00 0000112222222 6666666665553 4554 7799999999
Q ss_pred CC
Q 011476 332 GI 333 (485)
Q Consensus 332 G~ 333 (485)
|.
T Consensus 266 gy 267 (448)
T KOG1399|consen 266 GY 267 (448)
T ss_pred ee
Confidence 95
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.64 E-value=5.5e-14 Score=136.14 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=173.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCccccc-ccccc-hHHHHhhCCCeEEEEEe
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEAR-SIVEP-VRNIVRKKNVDICFWEA 132 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~gv~v~~~~~ 132 (485)
....++++|||||+||++||+.|++.|++|+|+|+++.+|+............+.. -++.+ +.+.-..-++++ +..+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l-~Tya 199 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL-ITYA 199 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee-eeee
Confidence 34568999999999999999999999999999999999998632111111110000 01111 122222222222 2233
Q ss_pred EEEEEecCCCEEEEe-----------------------------------------------------------------
Q 011476 133 ECFKIDAENKKVYCR----------------------------------------------------------------- 147 (485)
Q Consensus 133 ~v~~id~~~~~v~~~----------------------------------------------------------------- 147 (485)
+|..|+-..+.++++
T Consensus 200 eV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C 279 (622)
T COG1148 200 EVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLC 279 (622)
T ss_pred eeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhh
Confidence 333332111100000
Q ss_pred -cC---CccCC-CCCceEEeecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHH-Hhhc-CCCCCCHHHH
Q 011476 148 -SS---QNTNL-NGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIES-FEKA-SLPNLSDEER 220 (485)
Q Consensus 148 -~~---~~~~~-~~~~~~~~~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 220 (485)
.. ....+ ...++.++....+|+|||=.+....-... -+.-.+.++-...++.+.+... .... -+.+. ..
T Consensus 280 ~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~E-yGYG~~~nVIT~lElErml~~~GPT~GkvlrpS---dg 355 (622)
T COG1148 280 EKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEE-YGYGKYPNVITNLELERMLNPNGPTGGKVLRPS---DG 355 (622)
T ss_pred hhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhh-cCCCCCcchhhHHHHHHHhccCCCCCceEEecC---CC
Confidence 00 00001 12345688999999999987765432221 0111122333333443333210 0000 01001 11
Q ss_pred hhcccEEE---ECCCh--------hHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHH
Q 011476 221 KRILHFVI---VGGGP--------TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289 (485)
Q Consensus 221 ~~~~~vvV---VGgG~--------~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~ 289 (485)
...|+|+. ||+-+ +-+=++..|.+ +.....++|+ .+|++++..-+....+ ..++..+.=+
T Consensus 356 ~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDiRafG~~---yEefY~~~Q~ 426 (622)
T COG1148 356 KPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDIRAFGKD---YEEFYVRSQE 426 (622)
T ss_pred CCCceEEEEEEecCcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEeeccCcc---HHHHHHhhhh
Confidence 34567664 56544 11112222222 3344556765 7999998876654422 2333333334
Q ss_pred hCCcEEEcCceEEEE---eCCc--EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC--CCCCceeeC-CCcc
Q 011476 290 RDGIDVKLGSMVVKV---TDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATD-EWLR 361 (485)
Q Consensus 290 ~~gV~v~~~~~v~~v---~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~--~~~g~i~vd-~~l~ 361 (485)
+.||+++.+. +.+| .++. |....+-.|+..++++|+|++++|+.+.+-.+.+.+-+|+ +.+|++... +.++
T Consensus 427 ~~gV~fIRGr-vaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~ 505 (622)
T COG1148 427 DYGVRFIRGR-VAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLR 505 (622)
T ss_pred hhchhhhcCC-hHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcc
Confidence 7799998775 3333 3333 3444445677778999999999998887888888888888 678887755 4444
Q ss_pred c--cCCCCeEEeccccCCCCcchHHHHHHHHh
Q 011476 362 V--EGSDSIYALGDCATVNQRRVMEDIAAIFS 391 (485)
Q Consensus 362 t--~~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 391 (485)
. ++.++||.+|=|.+. . .+...++++..
T Consensus 506 pv~s~~~GIflAG~aqgP-k-dI~~siaqa~a 535 (622)
T COG1148 506 PVDSNRDGIFLAGAAQGP-K-DIADSIAQAKA 535 (622)
T ss_pred cccccCCcEEEeecccCC-c-cHHHHHHHhHH
Confidence 2 267899999977653 3 25555444443
No 92
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.61 E-value=1.3e-13 Score=131.76 Aligned_cols=279 Identities=15% Similarity=0.174 Sum_probs=168.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCCcccCC--Cccccc------cCcc---cc--------------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAFTP--LLPSVT------CGTV---EA-------------- 109 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~--~~~~~~------~~~~---~~-------------- 109 (485)
....|++.||-||+-|+.|..|...+ .++..+|+.+.|.|+| +++.-. .... +|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 35689999999999999999998654 7899999999999986 233210 0000 00
Q ss_pred ---------------cccccchHHHHhhCCCeEEEEEeEEE---EEecCCCEEE-EecCCccCCCCCceEEeecCEEEEc
Q 011476 110 ---------------RSIVEPVRNIVRKKNVDICFWEAECF---KIDAENKKVY-CRSSQNTNLNGKEEFCMDYDYLVIA 170 (485)
Q Consensus 110 ---------------~~~~~~~~~~~~~~gv~v~~~~~~v~---~id~~~~~v~-~~~~~~~~~~~~~~~~~~yd~lviA 170 (485)
.+..+ +-.+....--.++ +..+|. .++.+..... +.+. ++ ..+.+..|||+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~d-Y~~Waa~~l~~~r-fg~~V~~i~~~~~d~~~~~~~~t~------~~--~~y~ar~lVlg 152 (436)
T COG3486 83 RLYEFLNYETFHIPRREYND-YCQWAASQLPSLR-FGEEVTDISSLDGDAVVRLFVVTA------NG--TVYRARNLVLG 152 (436)
T ss_pred hHhhhhhhhcccccHHHHHH-HHHHHHhhCCccc-cCCeeccccccCCcceeEEEEEcC------CC--cEEEeeeEEEc
Confidence 01111 1122222112343 456677 4444433221 1111 11 28999999999
Q ss_pred cCCCCCCCC-CCCCC-CccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHHHHhhHH
Q 011476 171 MGARANTFN-TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE 248 (485)
Q Consensus 171 tG~~~~~~~-i~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l~~~~~~ 248 (485)
+|.+|.+|+ +..+. +.++.. .++.....++ ...++|.|||||.+|.|+-..|..-.
T Consensus 153 ~G~~P~IP~~f~~l~~~~vfHs------s~~~~~~~~~--------------~~~~~V~ViG~GQSAAEi~~~Ll~~~-- 210 (436)
T COG3486 153 VGTQPYIPPCFRSLIGERVFHS------SEYLERHPEL--------------LQKRSVTVIGSGQSAAEIFLDLLNSQ-- 210 (436)
T ss_pred cCCCcCCChHHhCcCccceeeh------HHHHHhhHHh--------------hcCceEEEEcCCccHHHHHHHHHhCC--
Confidence 999998884 33332 334322 1122111111 12235999999999999988887642
Q ss_pred HHHhhCcCCCCCceEEEEecCcccccc---------ccHHHHHH-----------H-------------------HHHH-
Q 011476 249 DLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAF-----------A-------------------EEKF- 288 (485)
Q Consensus 249 ~~~~~~p~~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~-----------~-------------------~~~l- 288 (485)
+. ...++.++.|+..++|. +.++..++ + -+.|
T Consensus 211 ------~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY 282 (436)
T COG3486 211 ------PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLY 282 (436)
T ss_pred ------CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 11 23468899999877653 12221111 1 1111
Q ss_pred ------HhCCcEEEcCceEEEEeCCc-----EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC----CCCCCc
Q 011476 289 ------SRDGIDVKLGSMVVKVTDKE-----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG----QTNRRA 353 (485)
Q Consensus 289 ------~~~gV~v~~~~~v~~v~~~~-----v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g----~~~~g~ 353 (485)
.+..|.++.++.|..++..+ +.+....+|+.++++.|.||+|||.. ..+..+++.+. -+++|.
T Consensus 283 ~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~--~~~P~fL~~l~d~l~~d~~g~ 360 (436)
T COG3486 283 EQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR--RAVPSFLEGLADRLQWDDDGR 360 (436)
T ss_pred HHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc--cCCchhhhhHHHhhcccccCC
Confidence 14579999999999997532 34444456777789999999999974 22223444443 378899
Q ss_pred eeeCCCccccCC----CCeEEeccccC
Q 011476 354 LATDEWLRVEGS----DSIYALGDCAT 376 (485)
Q Consensus 354 i~vd~~l~t~~~----~~Vya~GD~~~ 376 (485)
..|+..++.... ..||+-|-+..
T Consensus 361 l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 361 LVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred eEecCceeeecCCCCcceEEEeccccc
Confidence 999987665322 25999887654
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.54 E-value=6.4e-14 Score=140.43 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=97.2
Q ss_pred EEEECCChhHHHHH-HHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 011476 226 FVIVGGGPTGVEFA-AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (485)
Q Consensus 226 vvVVGgG~~g~e~A-~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v 304 (485)
=+|++.|.+|+|.+ ..+.++... -|.+|+++...+..++.+ ++.+.+.+.+++.|+++++++.|.++
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v 285 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGA 285 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 37899999999999 555533111 278999999998887764 78888999999999999999999998
Q ss_pred eC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHH--------hCC-----------------C----CCCc
Q 011476 305 TD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ--------VGQ-----------------T----NRRA 353 (485)
Q Consensus 305 ~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~--------~g~-----------------~----~~g~ 353 (485)
+. +++..+...+|+...+.+|.||+|+|. .+.. .|..+ +++ . ..-+
T Consensus 286 ~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr--f~s~-GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~G 362 (422)
T PRK05329 286 EFEGGRVTAVWTRNHGDIPLRARHFVLATGS--FFSG-GLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFG 362 (422)
T ss_pred EEeCCEEEEEEeeCCceEEEECCEEEEeCCC--cccC-ceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcC
Confidence 63 345443334565567999999999993 2211 11000 000 0 1124
Q ss_pred eeeCCCccc------cCCCCeEEeccccCCCCc
Q 011476 354 LATDEWLRV------EGSDSIYALGDCATVNQR 380 (485)
Q Consensus 354 i~vd~~l~t------~~~~~Vya~GD~~~~~~~ 380 (485)
+.+|+.|+. +..+||||+|++..+++.
T Consensus 363 V~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~ 395 (422)
T PRK05329 363 VATDATLRPLDSQGGPVIENLYAAGAVLGGYDP 395 (422)
T ss_pred ceECCCcCcccCCCCeeccceEEeeehhcCCch
Confidence 556655553 157999999999988665
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.38 E-value=5.7e-12 Score=96.56 Aligned_cols=68 Identities=29% Similarity=0.573 Sum_probs=65.0
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v 304 (485)
|++|||||++|+|+|..|.++ +.+||++++.+.+++.+++++.+.+++.|++.||++++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--------------g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--------------GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--------------CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 589999999999999999997 689999999999999999999999999999999999999999999
Q ss_pred eC
Q 011476 305 TD 306 (485)
Q Consensus 305 ~~ 306 (485)
+.
T Consensus 67 ~~ 68 (80)
T PF00070_consen 67 EK 68 (80)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.14 E-value=1.3e-09 Score=104.87 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCCCCCc------chHHHHHHhCC
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHA------IIKDFMKQVGQ 348 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~~~~p------~~~~l~~~~g~ 348 (485)
...+.+.+...+++.||+++++++|.+++.+. ..+. +.+|++ +.||.+|+|+|-.+.| .--.+++++|+
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~-t~~g~~--i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~ 186 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLD-TSSGET--VKCDSLILATGGKSWPKLGSTGFGYPIARQFGH 186 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEE-cCCCCE--EEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence 35678889999999999999999999998764 4444 367764 9999999999966666 33367888886
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=2.3e-08 Score=98.86 Aligned_cols=170 Identities=19% Similarity=0.231 Sum_probs=96.1
Q ss_pred CCeEEEECCcHHHHHHHHhcC---CCCCcEEEEcCCCCccc----CCCccc----cc-------------------cCc-
Q 011476 58 KKKVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAF----TPLLPS----VT-------------------CGT- 106 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~---~~g~~V~lie~~~~~~~----~~~~~~----~~-------------------~~~- 106 (485)
+++|+|||+|++|+.+|.+|. .....|.|||+.+.+|. +...|. +. .+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 369999999999999999997 22233999999977663 111110 00 000
Q ss_pred ---cc------------cccc-ccc----hHHHHhhCCC-eEEEEEeEEEEEecC--CCE--EEEecCCccCCCCCceEE
Q 011476 107 ---VE------------ARSI-VEP----VRNIVRKKNV-DICFWEAECFKIDAE--NKK--VYCRSSQNTNLNGKEEFC 161 (485)
Q Consensus 107 ---~~------------~~~~-~~~----~~~~~~~~gv-~v~~~~~~v~~id~~--~~~--v~~~~~~~~~~~~~~~~~ 161 (485)
.+ ++.+ -++ +..++++... .+.+++.+++++... ... +...+|. .
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~----------~ 150 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP----------S 150 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC----------e
Confidence 00 0000 011 2222222221 256778888887665 222 2223332 7
Q ss_pred eecCEEEEccCCCCCCCCC-----CCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHH
Q 011476 162 MDYDYLVIAMGARANTFNT-----PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236 (485)
Q Consensus 162 ~~yd~lviAtG~~~~~~~i-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~ 236 (485)
..+|-+|+|||..+..++. +|... .+.+...+ ..+.. ....-+|+|+|+|.+-+
T Consensus 151 ~~ad~~Vlatgh~~~~~~~~~~~~~~~~~---~ia~~~~~-------------~~ld~-----v~~~drVli~GsgLt~~ 209 (474)
T COG4529 151 EIADIIVLATGHSAPPADPAARDLKGSPR---LIADPYPA-------------NALDG-----VDADDRVLIVGSGLTSI 209 (474)
T ss_pred eeeeEEEEeccCCCCCcchhhhccCCCcc---eeccccCC-------------ccccc-----ccCCCceEEecCCchhH
Confidence 7899999999976543332 22111 11111111 01111 12233799999999999
Q ss_pred HHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCc
Q 011476 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (485)
Q Consensus 237 e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~ 270 (485)
+....+.+.+ ....||++.|+.
T Consensus 210 D~v~~l~~~g------------h~g~It~iSRrG 231 (474)
T COG4529 210 DQVLVLRRRG------------HKGPITAISRRG 231 (474)
T ss_pred HHHHHHhccC------------CccceEEEeccc
Confidence 9999999865 246789998875
No 97
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.95 E-value=5.3e-08 Score=96.76 Aligned_cols=90 Identities=17% Similarity=0.310 Sum_probs=59.5
Q ss_pred HHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeE
Q 011476 250 LFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMV 327 (485)
Q Consensus 250 ~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~v 327 (485)
+.+.+|.+.+...-.++......+ .+..+...+.+.+++.|++++.+++|+++. +++++.+.+.+|+ +.+|.|
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~---i~ad~v 195 (358)
T PF01266_consen 121 LRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE---IRADRV 195 (358)
T ss_dssp HHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE---EEECEE
T ss_pred hhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc---ccccee
Confidence 344566655445555555554432 245778888889999999999999999997 4556634446665 899999
Q ss_pred EEccCCCCCcchHHHHHHhCC
Q 011476 328 VWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 328 i~a~G~~~~p~~~~l~~~~g~ 348 (485)
|+|+| +.+..|++.++.
T Consensus 196 V~a~G----~~s~~l~~~~~~ 212 (358)
T PF01266_consen 196 VLAAG----AWSPQLLPLLGL 212 (358)
T ss_dssp EE--G----GGHHHHHHTTTT
T ss_pred Eeccc----ccceeeeecccc
Confidence 99999 344456666653
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.91 E-value=1.1e-08 Score=102.68 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=48.8
Q ss_pred EecCccccccc--cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCCCCCcch--
Q 011476 266 LEAADHILNMF--DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII-- 339 (485)
Q Consensus 266 v~~~~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~-- 339 (485)
++...++.|.- ...+.+.+.+.+++.||+++++++|.+++ ++++..+..+++.. +.||.||+|+|-..-|.+
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~--~~a~~vILAtGG~S~p~~GS 172 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGE--YEADAVILATGGKSYPKTGS 172 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEE--EEESEEEE----SSSGGGT-
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCccc--ccCCEEEEecCCCCccccCC
Confidence 34445555532 35667888999999999999999999995 45533333335554 999999999996555653
Q ss_pred ----HHHHHHhCC
Q 011476 340 ----KDFMKQVGQ 348 (485)
Q Consensus 340 ----~~l~~~~g~ 348 (485)
-.+++++|.
T Consensus 173 ~G~gy~~a~~lGh 185 (409)
T PF03486_consen 173 DGSGYRIAKKLGH 185 (409)
T ss_dssp SSHHHHHHHHTT-
T ss_pred CcHHHHHHHHCCC
Confidence 256788875
No 99
>PRK09897 hypothetical protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=104.06 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=89.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcc----cCCC------c-c---------------ccc------
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA----FTPL------L-P---------------SVT------ 103 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~----~~~~------~-~---------------~~~------ 103 (485)
+++|+||||||+|+++|.+|... ..+|+|||++..+| |.+- + + +..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 36899999999999999999743 46899999976555 2210 0 0 000
Q ss_pred ------------cCcccccccc-cchH-------HHHhhCCCeEEE-EEeEEEEEecCCCEEEEecCCccCCCCCceEEe
Q 011476 104 ------------CGTVEARSIV-EPVR-------NIVRKKNVDICF-WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCM 162 (485)
Q Consensus 104 ------------~~~~~~~~~~-~~~~-------~~~~~~gv~v~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~ 162 (485)
.+...++.+. ++++ +.+...|+.+.+ ..++|++++..+..+.+.... ++ ..+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~-----gg--~~i 153 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ-----DL--PSE 153 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC-----CC--eEE
Confidence 0011112111 1112 222334432333 456899998877766665321 11 278
Q ss_pred ecCEEEEccCCCCCCCCCCCCCCccccccChhHHHHHHHHHHHHHhhcCCCCCCHHHHhhcccEEEECCChhHHHHHHHH
Q 011476 163 DYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAEL 242 (485)
Q Consensus 163 ~yd~lviAtG~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~g~e~A~~l 242 (485)
.+|+||+|||..+..+ .++. . .++.+..+.. .. .. ..+.+|+|+|.|.++++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~--~yi~~pw~~~-----~~-----~~---------i~~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R--TYFPSPWSGL-----ME-----AK---------VDACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c--cccCCCCcch-----hh-----cC---------CCCCeEEEECCCHHHHHHHHHH
Confidence 9999999999753211 1111 1 1111111110 00 00 1134999999999999999999
Q ss_pred HHh
Q 011476 243 HDF 245 (485)
Q Consensus 243 ~~~ 245 (485)
...
T Consensus 211 t~~ 213 (534)
T PRK09897 211 AIQ 213 (534)
T ss_pred Hhc
Confidence 855
No 100
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.87 E-value=2.6e-09 Score=112.95 Aligned_cols=106 Identities=9% Similarity=0.064 Sum_probs=69.6
Q ss_pred ccEEEECCCh--hHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccccc--------------HHHHHHHHHH
Q 011476 224 LHFVIVGGGP--TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD--------------KRITAFAEEK 287 (485)
Q Consensus 224 ~~vvVVGgG~--~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~~~~~ 287 (485)
.++.|+|+|+ ++.+++..+... +.+++++.+.+.+++.++ ..+...+.+.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~ 223 (574)
T PRK12842 158 KTITFIGMMFNSSNADLKHFFNAT--------------RSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKS 223 (574)
T ss_pred ccccccceecccchHHHHHHHhhc--------------cchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHH
Confidence 3888999998 788988888775 455666555444443322 3566677888
Q ss_pred HHhCCcEEEcCceEEEEe--CCcEEEEEc-CCCeEEEEecC-eEEEccCCCCCcchHHHHHH
Q 011476 288 FSRDGIDVKLGSMVVKVT--DKEIFTKVR-GNGETSSMPYG-MVVWSTGIAPHAIIKDFMKQ 345 (485)
Q Consensus 288 l~~~gV~v~~~~~v~~v~--~~~v~~~~~-~~G~~~~i~~D-~vi~a~G~~~~p~~~~l~~~ 345 (485)
+++.||++++++.++++. ++.+..+.. ..+....+.++ .||+|+| ..++..+++++
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtG--g~~~n~~~~~~ 283 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACG--GFSHDLARIAR 283 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCC--CccchHHHHHH
Confidence 889999999999999985 343433222 12333357786 7999999 34433344443
No 101
>PLN02463 lycopene beta cyclase
Probab=98.80 E-value=2.8e-08 Score=101.16 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCC-------cc----------cccc--------------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL-------LP----------SVTC-------------- 104 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~-------~~----------~~~~-------------- 104 (485)
...+||+||||||||+++|..|++.|++|+|+|+.+...+... +. ....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 4457999999999999999999999999999998764332110 00 0000
Q ss_pred ---CcccccccccchHHHHhhCCCeEEEEEeEEEEEecCCCE--EEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 105 ---GTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
+.++..++...+.+.+...|++ +..++|.+|+..+.. |.++++. .+.+|.||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~--~~~~~V~~I~~~~~~~~V~~~dG~----------~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQ--FHQAKVKKVVHEESKSLVVCDDGV----------KIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCE--EEeeEEEEEEEcCCeEEEEECCCC----------EEEcCEEEECcCCCcC
Confidence 0001111222233444556766 557889888766554 4444433 8999999999998754
No 102
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.76 E-value=2.7e-08 Score=96.23 Aligned_cols=109 Identities=18% Similarity=0.315 Sum_probs=69.8
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCC----ccc---------------------c-ccC-------
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LPS---------------------V-TCG------- 105 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~---------------------~-~~~------- 105 (485)
+||+|||||++|+++|+.|++.|.+|+|+|+.+....... .+. + ..+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 5899999999999999999999999999998865432110 000 0 000
Q ss_pred ------cccccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 106 ------TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
.++...+...+.+.+.+.|+++ +.++++..+..+.+.+.+.... + ...+.+|+||+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~-~~~~~v~~~~~~~~~~~~~~~~-----~--~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL-RLGTTVLDVEIHDDRVVVIVRG-----G--EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE-EeCcEEeeEEEeCCEEEEEEcC-----c--cEEEEeCEEEECCCcch
Confidence 0011122233455566678776 4677888876655544332111 1 12789999999999864
No 103
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.76 E-value=2.6e-08 Score=104.82 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=72.4
Q ss_pred ccEEEECCChhHHHHHHH-------HHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEE
Q 011476 224 LHFVIVGGGPTGVEFAAE-------LHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~-------l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 296 (485)
+.++++|+|.++++.+.. +.++ +.+|++....+..+..+...+...+.+.+++.||+++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~ 226 (557)
T PRK07843 161 LNMVVMQQDYVWLNLLKRHPRGVLRALKV--------------GARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVL 226 (557)
T ss_pred ccccccHHHHHHHHhhhcCchhHHHHHHH--------------HHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEE
Confidence 378899999999998765 4444 3456555444444444566778888899999999999
Q ss_pred cCceEEEEeC--CcEEEEE-cCCCeEEEEecC-eEEEccCCCCCcchHHHHHHh
Q 011476 297 LGSMVVKVTD--KEIFTKV-RGNGETSSMPYG-MVVWSTGIAPHAIIKDFMKQV 346 (485)
Q Consensus 297 ~~~~v~~v~~--~~v~~~~-~~~G~~~~i~~D-~vi~a~G~~~~p~~~~l~~~~ 346 (485)
+++.++++.. +++..+. ..+|+...+.++ .||+|+|- ..+|. ++.+.+
T Consensus 227 ~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG-~~~n~-~m~~~~ 278 (557)
T PRK07843 227 LNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG-FEHNE-QMRAKY 278 (557)
T ss_pred eCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC-cCcCH-HHHHHh
Confidence 9999999863 3343222 135666678885 69998873 44444 554443
No 104
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.70 E-value=4.2e-08 Score=92.58 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC-----Cccccc--------------------cC--cccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-----LLPSVT--------------------CG--TVEA 109 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~-----~~~~~~--------------------~~--~~~~ 109 (485)
..+||+||||||||++||++|++.|++|+|+|+.+.+++.. +++... .+ ..+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 35799999999999999999999999999999987765421 011000 00 0112
Q ss_pred cccccchHHHHhhCCCeEEEEEeEEEEEecCCC-EE---EEecCCccCCC--CCceEEeecCEEEEccCCCC
Q 011476 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK-KV---YCRSSQNTNLN--GKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 110 ~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~-~v---~~~~~~~~~~~--~~~~~~~~yd~lviAtG~~~ 175 (485)
.++...+.+...+.|+++ +..+.+.++..+++ .+ .+.+.. .+.. ..+...+.++.||+|||...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I-~~~t~V~dl~~~~~g~V~Gvv~~~~~-v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI-FNGVSVEDVILREDPRVAGVVINWTP-VEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE-EcCceeceeeEeCCCcEEEEEEcccc-ccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 233334555566778887 45667877754332 22 221110 0000 11234899999999999753
No 105
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.70 E-value=1.6e-06 Score=86.49 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC-------
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG------- 347 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g------- 347 (485)
...+.+.+.+.+++.|++++.+++|.++. +++++.+...++....+.+|.+|+|+|... ...|.++++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~---S~gL~a~l~~i~Epif 338 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFF---SNGLVAEFDKIYEPIF 338 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCc---CHHHHhhcCceeeecc
Confidence 45778889999999999999999999975 344655543444333499999999999531 113333321
Q ss_pred -C-----C----------------CCCceeeCCCcccc----CCCCeEEeccccCCCCc
Q 011476 348 -Q-----T----------------NRRALATDEWLRVE----GSDSIYALGDCATVNQR 380 (485)
Q Consensus 348 -~-----~----------------~~g~i~vd~~l~t~----~~~~Vya~GD~~~~~~~ 380 (485)
+ . ..-+|.+|+++|.. ..+|+||+|-+..+.+.
T Consensus 339 ~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~ 397 (419)
T TIGR03378 339 GLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDP 397 (419)
T ss_pred CCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCCh
Confidence 1 0 11257789888831 27899999999887654
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.68 E-value=7.8e-08 Score=97.20 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=73.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcccc---------ccCc-------cc------------
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSV---------TCGT-------VE------------ 108 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~---------~~~~-------~~------------ 108 (485)
+.+||+||||||||++||+.|++.|++|+|+|+.+..+..++.... .... ..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 4689999999999999999999999999999998877765432110 0000 00
Q ss_pred ------------ccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 109 ------------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 109 ------------~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
...+-..+.+...+.|+++ +..+++..+..++..+.+.... ++ .++.++.+|.|+|...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~-~~~~~~~~~~~~~~~~~~~~~~-----~~--~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAEL-YPGTRVTGVIREDDGVVVGVRA-----GD--DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEE-EeceEEEEEEEeCCcEEEEEEc-----CC--EEEEcCEEEECCCcch
Confidence 0011112455566778887 4677788877665443322111 11 3899999999999864
No 107
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.68 E-value=1.6e-06 Score=88.29 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=32.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
+||+|||||..|+++|++|++.|++|+|+|+++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998743
No 108
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.66 E-value=5.7e-08 Score=74.25 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=60.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEEec
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDA 139 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~ 139 (485)
+|+|||||+.|+.+|..|+..|.+|+||++.+.+. +.+ ..++...+.+.+++.|++++ .+..+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~---------~~~~~~~~~~~l~~~gV~v~-~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGF---------DPDAAKILEEYLRKRGVEVH-TNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTS---------SHHHHHHHHHHHHHTTEEEE-ESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhc---------CHHHHHHHHHHHHHCCCEEE-eCCEEEEEEE
Confidence 68999999999999999999999999999997654 111 12555667888999999984 6788888887
Q ss_pred CCCE--EEEec
Q 011476 140 ENKK--VYCRS 148 (485)
Q Consensus 140 ~~~~--v~~~~ 148 (485)
++.. |++++
T Consensus 69 ~~~~~~V~~~~ 79 (80)
T PF00070_consen 69 DGDGVEVTLED 79 (80)
T ss_dssp ETTSEEEEEET
T ss_pred eCCEEEEEEec
Confidence 6654 55544
No 109
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.66 E-value=3.5e-07 Score=94.08 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=37.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCC----CCCcEEEEcCCCCcccCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~----~g~~V~lie~~~~~~~~~ 97 (485)
..+++++|||||+|||+||.+|.+ +|++|+|+|+.+..|+..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 346899999999999999999986 478999999999988863
No 110
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.65 E-value=2.8e-07 Score=91.74 Aligned_cols=95 Identities=19% Similarity=0.340 Sum_probs=63.3
Q ss_pred HHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEec
Q 011476 247 DEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPY 324 (485)
Q Consensus 247 ~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~ 324 (485)
.+.+.++-|.+.++..-.+......+. -..++...+.+.+.++|+++++++.|+.++. +++.+..+.+|++. +.|
T Consensus 124 ~~~i~~~eP~l~~~~~aal~~p~~giV--~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~-~~a 200 (429)
T COG0579 124 KEEIKELEPLLNEGAVAALLVPSGGIV--DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET-LEA 200 (429)
T ss_pred HHHHHhhCccccccceeeEEcCCCceE--cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEE-EEe
Confidence 344555666666553332332222221 1235677778888888999999999999974 33677766778765 999
Q ss_pred CeEEEccCCCCCcchHHHHHHhCC
Q 011476 325 GMVVWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 325 D~vi~a~G~~~~p~~~~l~~~~g~ 348 (485)
+.||.|.|.... .|++.+|+
T Consensus 201 k~Vin~AGl~Ad----~la~~~g~ 220 (429)
T COG0579 201 KFVINAAGLYAD----PLAQMAGI 220 (429)
T ss_pred eEEEECCchhHH----HHHHHhCC
Confidence 999999995332 56666665
No 111
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.64 E-value=7.2e-08 Score=94.83 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=63.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEE-cCCCCcccCCCcccccc---Ccc----------------------------
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVI-SPRNYFAFTPLLPSVTC---GTV---------------------------- 107 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~li-e~~~~~~~~~~~~~~~~---~~~---------------------------- 107 (485)
||+|||||+||+.||+.+++.|.+|.|+ ...+.++..++.|.+.. +.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 44455555444443210 000
Q ss_pred ------------cccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEE---EEecCCccCCCCCceEEeecCEEEEccC
Q 011476 108 ------------EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKV---YCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (485)
Q Consensus 108 ------------~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~~~~~~yd~lviAtG 172 (485)
+...+...+++.+.... ++.+.+++|.++..+++.| .+.++. .+.+|.+|+|||
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~-nl~i~~~~V~~l~~e~~~v~GV~~~~g~----------~~~a~~vVlaTG 149 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHP-NLTIIQGEVTDLIVENGKVKGVVTKDGE----------EIEADAVVLATG 149 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTST-TEEEEES-EEEEEECTTEEEEEEETTSE----------EEEECEEEE-TT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCC-CeEEEEcccceEEecCCeEEEEEeCCCC----------EEecCEEEEecc
Confidence 00011122444555422 3556799999998776654 333332 899999999999
Q ss_pred C
Q 011476 173 A 173 (485)
Q Consensus 173 ~ 173 (485)
.
T Consensus 150 t 150 (392)
T PF01134_consen 150 T 150 (392)
T ss_dssp T
T ss_pred c
Confidence 8
No 112
>PRK06847 hypothetical protein; Provisional
Probab=98.59 E-value=2.2e-07 Score=93.32 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC----CCcc-------------cc--------------ccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT----PLLP-------------SV--------------TCG 105 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~-------------~~--------------~~~ 105 (485)
.+++|+|||||++|+++|..|++.|++|+|+|+.+.+.-. .+.+ .+ ..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3579999999999999999999999999999987542110 0000 00 000
Q ss_pred c----c----------------cccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEe--cCCccCCCCCceEEee
Q 011476 106 T----V----------------EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCR--SSQNTNLNGKEEFCMD 163 (485)
Q Consensus 106 ~----~----------------~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~--~~~~~~~~~~~~~~~~ 163 (485)
. . ...++...+.+.+.+.|+++. .+.++..++.....+.+. ++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~-~~~~v~~i~~~~~~~~v~~~~g~----------~~~ 151 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVR-LGTTVTAIEQDDDGVTVTFSDGT----------TGR 151 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEE-eCCEEEEEEEcCCEEEEEEcCCC----------EEE
Confidence 0 0 001112224444556687774 567888887666554443 332 789
Q ss_pred cCEEEEccCCCCC
Q 011476 164 YDYLVIAMGARAN 176 (485)
Q Consensus 164 yd~lviAtG~~~~ 176 (485)
+|.||.|+|.+..
T Consensus 152 ad~vI~AdG~~s~ 164 (375)
T PRK06847 152 YDLVVGADGLYSK 164 (375)
T ss_pred cCEEEECcCCCcc
Confidence 9999999998764
No 113
>PLN02697 lycopene epsilon cyclase
Probab=98.58 E-value=2.4e-07 Score=95.97 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC-----Ccccc-----c------------cCc-------
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-----LLPSV-----T------------CGT------- 106 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~-----~~~~~-----~------------~~~------- 106 (485)
...+||+||||||||+++|..|++.|++|+|||+...+.... .+... . .+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 345899999999999999999999999999999753221000 00000 0 000
Q ss_pred ---ccccccccchHHHHhhCCCeEEEEEeEEEEEecCCCEE---EEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 107 ---VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKV---YCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
++...+...+.+.+.+.|++ +.+++|+.+..+...+ .+.++. .+.++.||.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~--~~~~~V~~I~~~~~~~~vv~~~dG~----------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS--YLSSKVDRITEASDGLRLVACEDGR----------VIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE--EEeeEEEEEEEcCCcEEEEEEcCCc----------EEECCEEEECCCcCh
Confidence 01111112233444556766 5678898887544432 233332 799999999999876
No 114
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.58 E-value=1.7e-07 Score=94.66 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=66.5
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC---Ccc---------cc----ccC---------c--------
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP---LLP---------SV----TCG---------T-------- 106 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~---~~~---------~~----~~~---------~-------- 106 (485)
||+||||||||+++|+.|++.|++|+|||+.+..++.. .+. .. ..+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 69999999999999999999999999999887554321 000 00 000 0
Q ss_pred -ccccccccchHHHHhhCCCeEEEEEeEEEEEecC-CCE--EEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 107 -VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAE-NKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 107 -~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~-~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
++...+...+.+.+.+.|++ +..+++..+... ... +.+.++. .+.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~--~~~~~v~~i~~~~~~~~~v~~~~g~----------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL--WLERKAIHAEADGVALSTVYCAGGQ----------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE--EEccEEEEEEecCCceeEEEeCCCC----------EEEeCEEEECCCCch
Confidence 00011122233444556765 457788888765 333 3333322 799999999999876
No 115
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.57 E-value=2.3e-07 Score=87.27 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC-----Cccccc-----------cCc-----------ccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-----LLPSVT-----------CGT-----------VEA 109 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~-----~~~~~~-----------~~~-----------~~~ 109 (485)
..+||+||||||||++||+.|++.|++|+|+|+++.+++.. +++... .+. .+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 35799999999999999999999999999999998765321 111100 000 001
Q ss_pred cccccchHHHHhhCCCeEEEEEeEEEEEecCCC-----EEEEecCCccCCCC--CceEEeecCEEEEccCCC
Q 011476 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK-----KVYCRSSQNTNLNG--KEEFCMDYDYLVIAMGAR 174 (485)
Q Consensus 110 ~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~-----~v~~~~~~~~~~~~--~~~~~~~yd~lviAtG~~ 174 (485)
.++...+.+...+.|+++ +....+.++..++. .+.+.... ....+ .+...+.++.+|.|||..
T Consensus 100 ~el~~~L~~~a~e~GV~I-~~~t~V~dli~~~~~~~V~GVv~~~~~-v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI-FNGTSVEDLITRDDTVGVAGVVINWSA-IELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHcCCEE-ECCcEEEEEEEeCCCCceEEEEeCCcc-ccccCCCCCCEEEEcCEEEEeecCC
Confidence 122233444456678776 46777887765433 22232110 00011 113489999999999964
No 116
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.57 E-value=2.7e-06 Score=86.79 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG 347 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g 347 (485)
..+...+.+.+++.|+++++++.|++++. +.+..+...++ + +.+|.||+|+|. ....++..++
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~--~~a~~VV~a~G~----~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-V--ITADAYVVALGS----YSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-E--EeCCEEEECCCc----chHHHHHHhC
Confidence 35667777888899999999999999864 34443433444 3 889999999994 2235555544
No 117
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.56 E-value=2.6e-07 Score=94.35 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
..+||+||||||||++||+.|++.|++|+|+|+.+..+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 35899999999999999999999999999999886544
No 118
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.55 E-value=2.9e-07 Score=95.59 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=35.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC-CcccCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN-YFAFTP 97 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~-~~~~~~ 97 (485)
..+||+|||||+||+.||..+++.|.+|+|||+.. .+|+.+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~ 44 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS 44 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC
Confidence 35899999999999999999999999999999873 555433
No 119
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.53 E-value=1.7e-06 Score=85.90 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--Cc--EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+.+++.|++++++++++.++. ++ +.+....+|+..++.+|+||-|-|.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~ 170 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGA 170 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCc
Confidence 4567778888888999999999998753 33 3444444677667999999999994
No 120
>PRK10015 oxidoreductase; Provisional
Probab=98.52 E-value=4.7e-07 Score=92.36 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
..+||+||||||||++||+.|++.|++|+|||+.+..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 358999999999999999999999999999998876543
No 121
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.52 E-value=3e-06 Score=84.84 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.5
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+||+|||||.+|+++|++|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999998753
No 122
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.51 E-value=1.5e-07 Score=99.68 Aligned_cols=42 Identities=26% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
...+||+|||+|.+|+++|..+++.|++|+|||+.+.++++.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 346799999999999999999999999999999988777653
No 123
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.51 E-value=5.4e-07 Score=91.87 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
..++|+||||||||+++|..|++.|++|+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 3589999999999999999999999999999987643
No 124
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=5.9e-07 Score=92.63 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=77.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||++|+.+|..|.+.|.+|+|+++.+.+. +. . ..++...+.+.+++.|+++ +.+..+..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-----~~-----~-d~e~~~~l~~~L~~~GI~i-~~~~~V~~i 237 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-----PG-----E-DEDIAHILREKLENDGVKI-FTGAALKGL 237 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----cc-----c-cHHHHHHHHHHHHHCCCEE-EECCEEEEE
Confidence 5799999999999999999999999999999876532 11 1 1245555677788889887 367788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+...+.+.+. ++..++.+|.|++|+|..|+...
T Consensus 238 ~~~~~~v~~~~~-------g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 238 NSYKKQALFEYE-------GSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEcCCEEEEEEC-------CceEEEEeCEEEEecCCccCCCC
Confidence 876666655431 11237899999999999987643
No 125
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=5.8e-07 Score=92.23 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=76.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++|+|||+|++|+.+|..|++.|.+|+|+++.+.+.. .. ..++...+.+.+++.|+++ +.+.++..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~~------~~~~~~~~~~~l~~~GI~i-~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----RE------EPSVAALAKQYMEEDGITF-LLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----CC------CHHHHHHHHHHHHHcCCEE-EcCCEEEE
Confidence 357999999999999999999999999999998865421 10 1133444667788889887 35778889
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
++.++..+.+... + .++.||.||+|+|..|+..
T Consensus 224 i~~~~~~v~v~~~------g---~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 224 VKNDGDQVLVVTE------D---ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEecCCEEEEEEC------C---eEEEcCEEEEeeCCCCCcc
Confidence 8876655554431 1 1799999999999999864
No 126
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.50 E-value=9.2e-07 Score=89.58 Aligned_cols=104 Identities=19% Similarity=0.322 Sum_probs=80.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
..+++++|||||+.|+.+|..+++.|.+|||+|+.+.+. |. ..+++...+.+.+++.++.+ +.+..+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----p~------~D~ei~~~~~~~l~~~gv~i-~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----PG------EDPEISKELTKQLEKGGVKI-LLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----Cc------CCHHHHHHHHHHHHhCCeEE-EccceEE
Confidence 567899999999999999999999999999999987643 11 12366777888888877776 4677888
Q ss_pred EEecCCC--EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 136 KIDAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 136 ~id~~~~--~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
.+...++ .+.++++. ...+.+|++++|+|-+|+..+
T Consensus 239 ~~~~~~~~v~v~~~~g~--------~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 239 AVEKKDDGVLVTLEDGE--------GGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEecCCeEEEEEecCC--------CCEEEeeEEEEccCCccCCCC
Confidence 8876554 34444443 116889999999999998764
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.49 E-value=1.4e-06 Score=84.55 Aligned_cols=91 Identities=22% Similarity=0.365 Sum_probs=71.3
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcc---c--------cccc-----cHHHHHHHHHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH---I--------LNMF-----DKRITAFAEEKF 288 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~---~--------l~~~-----~~~~~~~~~~~l 288 (485)
+|+|||||+.|+++|..|.+. |.+|+|+++.+. + .+.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA--------------NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 699999999999999999886 689999998651 1 1222 257778888999
Q ss_pred HhCCcEEEcCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 289 SRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
++.|+++++ +.|++++.+. ..+.. .+|.. +.+|.+|+|+|.
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~-~~~~~--~~~d~liiAtG~ 110 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKT-GDGKE--YTAKAVIIATGA 110 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEe-CCCCE--EEeCEEEECCCC
Confidence 999999999 8899987643 34333 45554 999999999994
No 128
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.49 E-value=6e-07 Score=90.00 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=67.6
Q ss_pred eEEEECCcHHHHHHHHhc--CCCCCcEEEEcCCCCcccCC----Ccc--------ccccCcc------------------
Q 011476 60 KVVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFTP----LLP--------SVTCGTV------------------ 107 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L--~~~g~~V~lie~~~~~~~~~----~~~--------~~~~~~~------------------ 107 (485)
||+||||||||+++|.+| +..|.+|+|||+++..++.. +.. .......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 78999999999876653221 000 0000000
Q ss_pred ----cccccccchHHHHhhCCCeEEEEEeEEEEEecCCC--EEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 108 ----EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 108 ----~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
+...+.+.+.+.+...+ +.++++.|.+|+.... .+.+.+|. .+.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~--~~~~~~~V~~i~~~~~~~~v~~~~g~----------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG--VIRLNARVTSIEETGDGVLVVLADGR----------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC--eEEEccEEEEEEecCceEEEEECCCC----------EEEeeEEEECCCcccc
Confidence 00011111233333334 3378899999988877 44555543 8999999999996544
No 129
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.49 E-value=8.2e-06 Score=82.08 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=54.5
Q ss_pred HHhhCcCCC-CCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCe
Q 011476 250 LFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 250 ~~~~~p~~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (485)
+.+.+|.+. +.....++......+. +..+...+.+.+++.|++++.++.|+++.. +.+.+.. .+|+ +.+|.
T Consensus 118 ~~~~~P~l~~~~~~~~~~~~~~g~i~--p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~-~~~~---i~a~~ 191 (380)
T TIGR01377 118 LKQRFPNIRVPRNEVGLLDPNGGVLY--AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKT-TKGS---YQANK 191 (380)
T ss_pred HHHhCCCCcCCCCceEEEcCCCcEEc--HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEe-CCCE---EEeCE
Confidence 344556543 2222244444443321 335667777888889999999999999964 3344433 4443 89999
Q ss_pred EEEccCCCCCcchHHHHHHhCC
Q 011476 327 VVWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 327 vi~a~G~~~~p~~~~l~~~~g~ 348 (485)
||+|+|. ....+.+.+++
T Consensus 192 vV~aaG~----~~~~l~~~~g~ 209 (380)
T TIGR01377 192 LVVTAGA----WTSKLLSPLGI 209 (380)
T ss_pred EEEecCc----chHHHhhhccc
Confidence 9999993 22245555543
No 130
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.49 E-value=6.3e-07 Score=90.44 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
+||+||||||||+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 131
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.48 E-value=5e-06 Score=82.51 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=29.6
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+|+|||+|.|||++|..|... ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999977 99999998854
No 132
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.48 E-value=7.1e-07 Score=91.32 Aligned_cols=100 Identities=18% Similarity=0.305 Sum_probs=76.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
.++|+|||+|++|+.+|..|++.|.+|+++++.+.+... . . ..++...+.+.+++.|+++ +.+..+..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~----~-----~-~~~~~~~~~~~l~~~gV~v-~~~~~v~~i 205 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK----L-----F-DEEMNQIVEEELKKHEINL-RLNEEVDSI 205 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc----c-----c-CHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 479999999999999999999999999999987654211 0 1 1234455677888899887 467889999
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+.++..+.+.++. .+.+|.||+|+|.+|+..
T Consensus 206 ~~~~~~v~~~~g~----------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 206 EGEERVKVFTSGG----------VYQADMVILATGIKPNSE 236 (427)
T ss_pred ecCCCEEEEcCCC----------EEEeCEEEECCCccCCHH
Confidence 8766543444433 799999999999998753
No 133
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.47 E-value=7.3e-07 Score=92.17 Aligned_cols=105 Identities=24% Similarity=0.409 Sum_probs=78.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. . ..++...+.+.+++.|+++ +.+.++..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~-----~-~~~~~~~l~~~l~~~gV~i-~~~~~V~~i 239 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-----PG-----E-DKEISKLAERALKKRGIKI-KTGAKAKKV 239 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-----Cc-----C-CHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 5799999999999999999999999999999886542 11 1 1244556777888889887 367789999
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+.+.+.+.... ++++..+.+|.||+|+|.+|+...
T Consensus 240 ~~~~~~v~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 240 EQTDDGVTVTLED-----GGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEe-----CCeeEEEEeCEEEEeeCCccCCCC
Confidence 8765555443211 222347999999999999997654
No 134
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=9.6e-07 Score=91.49 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=75.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++|+|||||++|+.+|..|++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+.++..+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~~~------~~~~~~~l~~~l~~~gI~i-~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----PTE------DAELSKEVARLLKKLGVRV-VTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----CcC------CHHHHHHHHHHHHhcCCEE-EeCcEEEEE
Confidence 5799999999999999999999999999999886531 111 1244455677788889887 467788888
Q ss_pred ec--CCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DA--ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~--~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+. +++...+... +++...+.||.||+|+|..|+...
T Consensus 248 ~~~~~~~~~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 248 TLKKDGGVLIVAEH------NGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEecCCCEEEEEEe------CCceEEEEeCEEEEeeCCccCCCC
Confidence 74 3333222111 122347999999999999997643
No 135
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.44 E-value=4.3e-06 Score=87.94 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEE---EEEcCCCeEEEE
Q 011476 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIF---TKVRGNGETSSM 322 (485)
Q Consensus 248 ~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~---~~~~~~G~~~~i 322 (485)
+++.+.+|.++++..-.+......+ -+..+...+...+.+.|+++++++.|+++.. +++. +....+|+..++
T Consensus 122 ~e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i 198 (546)
T PRK11101 122 QQALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEI 198 (546)
T ss_pred HHHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEE
Confidence 3445567776655443444443221 2345666667778899999999999999853 3433 332234544569
Q ss_pred ecCeEEEccCCCCCcchHHHHHHhC
Q 011476 323 PYGMVVWSTGIAPHAIIKDFMKQVG 347 (485)
Q Consensus 323 ~~D~vi~a~G~~~~p~~~~l~~~~g 347 (485)
.+|.||.|+| ++...+.+..+
T Consensus 199 ~A~~VVnAaG----~wa~~l~~~~g 219 (546)
T PRK11101 199 HAPVVVNAAG----IWGQHIAEYAD 219 (546)
T ss_pred ECCEEEECCC----hhHHHHHHhcC
Confidence 9999999999 44445555444
No 136
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.44 E-value=9.7e-07 Score=91.27 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=77.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++++|||||++|+.+|..|++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+..+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-----~~~------~~~~~~~~~~~l~~~gi~i-~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-----PGE------DAEVSKVVAKALKKKGVKI-LTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-----CCC------CHHHHHHHHHHHHHcCCEE-EeCCEEEE
Confidence 35799999999999999999999999999999886532 111 1234445667788889887 46778988
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
++.+++.+.+... +++...+.+|.||+|+|..|+..
T Consensus 237 i~~~~~~v~v~~~------~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 237 VEKNDDQVVYENK------GGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEeCCEEEEEEe------CCcEEEEEeCEEEEecCCcccCC
Confidence 8876665655421 11123799999999999999765
No 137
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.44 E-value=1.4e-06 Score=89.70 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHh----CC--cEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC
Q 011476 278 KRITAFAEEKFSR----DG--IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 278 ~~~~~~~~~~l~~----~g--V~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~ 348 (485)
..+...+.+.+++ .| +++++++.|++++. +....+.+.+|+ +.+|.||+|+| .....|++.+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~---i~A~~VVvaAG----~~S~~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE---IRARFVVVSAC----GYSLLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCE---EEeCEEEECcC----hhHHHHHHHhCC
Confidence 3567777788888 77 88999999999974 333333335563 89999999999 333366777765
No 138
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.43 E-value=9.6e-07 Score=90.36 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=34.7
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
...+++||+||||||||++||+.|++.|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44667899999999999999999999999999999874
No 139
>PRK06184 hypothetical protein; Provisional
Probab=98.42 E-value=1e-06 Score=92.07 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999998754
No 140
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.42 E-value=1.4e-06 Score=88.08 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...++|+||||||+|+++|+.|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3467999999999999999999999999999998753
No 141
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=1.3e-06 Score=87.91 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
.++|+|||||+.|+.+|..|...|.+|+++++.+.+... ..+..+...+.+.+++.|+++ +.+..+..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~gV~i-~~~~~v~~i 209 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------LMPPEVSSRLQHRLTEMGVHL-LLKSQLQGL 209 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------hCCHHHHHHHHHHHHhCCCEE-EECCeEEEE
Confidence 578999999999999999999999999999987653210 011234455677788889886 357788888
Q ss_pred ecCCCEE--EEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 138 DAENKKV--YCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 138 d~~~~~v--~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
+.+...+ .+.++. .+.+|.||+|+|..|+.
T Consensus 210 ~~~~~~~~v~~~~g~----------~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 210 EKTDSGIRATLDSGR----------SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EccCCEEEEEEcCCc----------EEECCEEEECcCCCcch
Confidence 8765543 333332 89999999999998864
No 142
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.41 E-value=9e-06 Score=83.96 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+..+...+.+.+++.|++|+.++.|++++.++...+.+.+|+ +.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g~---v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDGQ---VTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCcE---EECCEEEEcccc
Confidence 346667788889999999999999999976543333335564 899999999994
No 143
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.41 E-value=2.9e-07 Score=81.36 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCccc-ccccccchHHHHhhCCCe
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE-ARSIVEPVRNIVRKKNVD 126 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~ 126 (485)
..||+||||||+||+||++|++.|.+|+|||++..+|+-. + ..|.+. +--+.++..+++++.||.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w---~GGmlf~~iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-W---GGGMLFNKIVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-c---ccccccceeeecchHHHHHHHhCCc
Confidence 4699999999999999999999999999999998887631 1 112211 123445677888888865
No 144
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=4.6e-07 Score=93.89 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
+.+||||||||++||+||..|+++|++|+|+|+++..|+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 35899999999999999999999999999999999888853
No 145
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.40 E-value=2.5e-05 Score=79.43 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC---CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~~---~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
..+...+.+.+++.|++++.++.|++++. +.+..+...+|+ +.++.||+|+|.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~---i~a~~vVvaagg 238 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF---IGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce---EECCEEEECCCh
Confidence 34556677888999999999999999952 334444445564 899999998883
No 146
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.38 E-value=2.9e-06 Score=85.78 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=55.6
Q ss_pred CceEEEEecCcccccc--ccHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 260 SVKITLLEAADHILNM--FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
|.+++....+ +++|. ....+.+.+.+.+++.||++++++.|+++..+ .+.+.. ++.. +.+|.||+|+|...
T Consensus 86 Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~--~~~~--i~ad~VIlAtG~~s 160 (400)
T TIGR00275 86 GLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET--SGGE--YEADKVILATGGLS 160 (400)
T ss_pred CCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE--CCcE--EEcCEEEECCCCcc
Confidence 5566655432 33332 34677888889999999999999999998643 233332 3443 88999999999533
Q ss_pred Ccc------hHHHHHHhCC
Q 011476 336 HAI------IKDFMKQVGQ 348 (485)
Q Consensus 336 ~p~------~~~l~~~~g~ 348 (485)
.|. -..+++++|.
T Consensus 161 ~p~~gs~G~g~~la~~lG~ 179 (400)
T TIGR00275 161 YPQLGSTGDGYEIAESLGH 179 (400)
T ss_pred cCCCCCCcHHHHHHHHCCC
Confidence 332 2256777765
No 147
>PRK06126 hypothetical protein; Provisional
Probab=98.38 E-value=8.4e-06 Score=86.15 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998864
No 148
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.37 E-value=1.6e-06 Score=87.49 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
+.++|+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 3579999999999999999999999999999988653
No 149
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.37 E-value=1.7e-06 Score=89.37 Aligned_cols=105 Identities=15% Similarity=0.240 Sum_probs=75.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|+..|.+|+|+++.+.+. +. . ..++...+.+.+++.|+++ +.++++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-----PR-----E-EPEISAAVEEALAEEGIEV-VTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-----Cc-----c-CHHHHHHHHHHHHHcCCEE-EcCcEEEEE
Confidence 4799999999999999999999999999999886532 11 1 1134455677788889887 466778888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+++.+.+.... .++..++.+|.||+|+|..|+...
T Consensus 234 ~~~~~~~~v~~~~-----~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 234 SVRGGGKIITVEK-----PGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEcCCEEEEEEEe-----CCCceEEEeCEEEEeECCCcCCCC
Confidence 7654433222110 011237999999999999998653
No 150
>PRK07233 hypothetical protein; Provisional
Probab=98.37 E-value=2.2e-06 Score=87.87 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=35.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
+|+|||||++||+||++|++.|++|+|+|+++.+|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6999999999999999999999999999999999885
No 151
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.37 E-value=1.3e-06 Score=88.39 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
.++|+|||+|+.|+.+|..|+..|.+|+|+++.+.+... .....+...+.+.+++.|+++. .+..+..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 212 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------NAPPPVQRYLLQRHQQAGVRIL-LNNAIEHV 212 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------hcCHHHHHHHHHHHHHCCCEEE-eCCeeEEE
Confidence 478999999999999999999999999999988654321 0111333446667778898873 57788888
Q ss_pred ecCCC-EEEEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
+.+.. .+.+.++. .+.+|.||+|+|..|+.
T Consensus 213 ~~~~~~~v~l~~g~----------~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 213 VDGEKVELTLQSGE----------TLQADVVIYGIGISAND 243 (396)
T ss_pred EcCCEEEEEECCCC----------EEECCEEEECCCCChhh
Confidence 65322 23444433 79999999999999875
No 152
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.36 E-value=1.4e-06 Score=75.78 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=62.9
Q ss_pred EEECCcHHHHHHHHhcCCC-----CCcEEEEcCCCCcccCC---C-cccc-----------ccC-------------c--
Q 011476 62 VVLGTGWAGTSFLKNLNNP-----SYDVQVISPRNYFAFTP---L-LPSV-----------TCG-------------T-- 106 (485)
Q Consensus 62 vIIG~G~aGl~aA~~L~~~-----g~~V~lie~~~~~~~~~---~-~~~~-----------~~~-------------~-- 106 (485)
+|||+|++|++++.+|.+. ..+|+|||+.+...+.+ - .+.. ... .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999744 57899999965421211 0 0000 000 0
Q ss_pred ----cccccc------ccc----hHHHHh--hCCCeEEEEEeEEEEEecCCCEE--EEecCCccCCCCCceEEeecCEEE
Q 011476 107 ----VEARSI------VEP----VRNIVR--KKNVDICFWEAECFKIDAENKKV--YCRSSQNTNLNGKEEFCMDYDYLV 168 (485)
Q Consensus 107 ----~~~~~~------~~~----~~~~~~--~~gv~v~~~~~~v~~id~~~~~v--~~~~~~~~~~~~~~~~~~~yd~lv 168 (485)
.....+ -++ +..+++ ..+++++++..+|++|+..+... .+.++. .+.+|+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~----------~~~~d~Vv 150 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQ----------SIRADAVV 150 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCC----------EEEeCEEE
Confidence 000000 011 222222 23677888899999998876654 444443 88999999
Q ss_pred EccCC
Q 011476 169 IAMGA 173 (485)
Q Consensus 169 iAtG~ 173 (485)
+|||.
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99995
No 153
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.36 E-value=1.2e-05 Score=75.87 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=86.5
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-----------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------------------------- 275 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~----------------------------- 275 (485)
.|+|||||+.|+-+|..+++. |.+|.++++...+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~--------------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKA--------------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 799999999999999999885 6899999877543110
Q ss_pred ---------ccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-cEEEEEc------CCC---eEEEEecCeEEEccCCC
Q 011476 276 ---------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIFTKVR------GNG---ETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 276 ---------~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~-~v~~~~~------~~G---~~~~i~~D~vi~a~G~~ 334 (485)
...++...+.+.+++.|++++.++.+.++. ++ .+..+.. .+| ...++.++.||.|+|.
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~- 171 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH- 171 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC-
Confidence 012344556677788899999999999874 33 3332211 111 2345999999999994
Q ss_pred CCcchHHHHHHhC---CC---------CCC-ceeeCCCccccCCCCeEEeccccC
Q 011476 335 PHAIIKDFMKQVG---QT---------NRR-ALATDEWLRVEGSDSIYALGDCAT 376 (485)
Q Consensus 335 ~~p~~~~l~~~~g---~~---------~~g-~i~vd~~l~t~~~~~Vya~GD~~~ 376 (485)
..+....+.+..+ .. +.+ ...|+.+-+. .|++|++|=++.
T Consensus 172 ~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~ 224 (257)
T PRK04176 172 DAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAAN 224 (257)
T ss_pred CcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhh
Confidence 2333434444332 10 111 2223333333 799999997654
No 154
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.36 E-value=2.1e-06 Score=88.90 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . . ..++...+.+.+++.|+++ +.+.++..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-d~~~~~~~~~~l~~~gi~i-~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-----A-----A-DEQVAKEAAKAFTKQGLDI-HLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-----c-----C-CHHHHHHHHHHHHHcCcEE-EeCcEEEE
Confidence 357999999999999999999999999999998865321 1 1 1244455667778889887 45778888
Q ss_pred EecCCCEEEE--ecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 137 IDAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 137 id~~~~~v~~--~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++.+...+.+ .++ ++++..+.+|.|++|+|..|+...
T Consensus 250 i~~~~~~v~v~~~~~------~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 250 IKTGGKGVSVAYTDA------DGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEcCCEEEEEEEeC------CCceeEEEcCEEEEccCCccCCCC
Confidence 8876554433 332 122347999999999999998653
No 155
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.36 E-value=3.8e-06 Score=84.43 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=35.4
Q ss_pred CeEEEECCcHHHHHHHHhcCCCC--CcEEEEcCCCCcccC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g--~~V~lie~~~~~~~~ 96 (485)
++++|||||++||+||++|.+.+ .+|+|+|+.++.|+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 47999999999999999999888 999999999999884
No 156
>PRK08244 hypothetical protein; Provisional
Probab=98.36 E-value=1.7e-06 Score=90.17 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998754
No 157
>PRK06370 mercuric reductase; Validated
Probab=98.35 E-value=1.9e-06 Score=89.12 Aligned_cols=103 Identities=21% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.|+++ +.+..+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----~------~~~~~~~~l~~~l~~~GV~i-~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-----R------EDEDVAAAVREILEREGIDV-RLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-----c------cCHHHHHHHHHHHHhCCCEE-EeCCEEEE
Confidence 357999999999999999999999999999998865421 1 11234455677788899887 35778888
Q ss_pred EecCCCE--EEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
++..++. +.+... + +...+.+|.||+|+|.+|+..
T Consensus 238 i~~~~~~~~v~~~~~------~-~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 238 VERDGDGIAVGLDCN------G-GAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEcCCEEEEEEEeC------C-CceEEEeCEEEECcCCCcCCC
Confidence 8875543 333211 1 123799999999999999865
No 158
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.35 E-value=2.1e-06 Score=87.21 Aligned_cols=34 Identities=15% Similarity=0.431 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
.++|+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999875
No 159
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.34 E-value=4.4e-06 Score=87.37 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
..+.+.+.+.+++.|++|++++.|.+|. ++++..+...+|+. +.+|.||++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~--~~ad~VI~a~~ 273 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGER--LDADAVVSNAD 273 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCE--EECCEEEECCc
Confidence 4677888899999999999999999986 34444444466765 88999999987
No 160
>PRK07236 hypothetical protein; Provisional
Probab=98.34 E-value=2.4e-06 Score=86.23 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999998863
No 161
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.34 E-value=3.2e-06 Score=86.96 Aligned_cols=101 Identities=34% Similarity=0.483 Sum_probs=71.6
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc------cc----cc-c--HHHHHHHHHHHHhC
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI------LN----MF-D--KRITAFAEEKFSRD 291 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~------l~----~~-~--~~~~~~~~~~l~~~ 291 (485)
+|+|||||+.|+.+|..|.+++ ++.+|+|+++.+.+ ++ .. + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998863 24699999998763 11 11 1 12223334667888
Q ss_pred CcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 292 GIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
||++++++.|++++.+ .+.+....+|+..++.+|.+|+|+| ..|+.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG--~~~~~ 117 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATG--ARPII 117 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCC--CCCCC
Confidence 9999999999999754 3444432335553345999999999 55543
No 162
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.34 E-value=1.8e-06 Score=87.56 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC--CcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g--~~V~lie~~~~ 92 (485)
+++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999885 99999998753
No 163
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.33 E-value=2.1e-05 Score=81.33 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--C-cEEEE--EcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCC
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~-~v~~~--~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~ 349 (485)
+..+...+.+.+++.|+++++++.|++++. + .+.+. ...+|+..++.+|.||+|+|.. ...+++.+|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~----s~~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG----ALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc----hHHHHHHcCCC
Confidence 356778888888889999999999999864 2 23332 2234443358999999999942 23667777763
No 164
>PRK06834 hypothetical protein; Provisional
Probab=98.33 E-value=2.6e-06 Score=88.35 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc--cC---CCcc-------------ccc--------cC----cc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA--FT---PLLP-------------SVT--------CG----TV 107 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~--~~---~~~~-------------~~~--------~~----~~ 107 (485)
.++|+||||||+|+++|..|++.|++|+|||+.+... .. .+.+ .+. .+ ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999875421 10 0000 000 00 00
Q ss_pred ccc---------------ccccchHHHHhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccC
Q 011476 108 EAR---------------SIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (485)
Q Consensus 108 ~~~---------------~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG 172 (485)
+.. .+...+.+.+++.|+++ +.+.+++++..++..+.+.... + .++.+|+||.|.|
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i-~~~~~v~~v~~~~~~v~v~~~~-----g---~~i~a~~vVgADG 153 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI-YRGREVTGFAQDDTGVDVELSD-----G---RTLRAQYLVGCDG 153 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE-EcCCEEEEEEEcCCeEEEEECC-----C---CEEEeCEEEEecC
Confidence 000 00111334455668777 3678888887776666554321 1 1799999999999
Q ss_pred CCCC
Q 011476 173 ARAN 176 (485)
Q Consensus 173 ~~~~ 176 (485)
++..
T Consensus 154 ~~S~ 157 (488)
T PRK06834 154 GRSL 157 (488)
T ss_pred CCCC
Confidence 8764
No 165
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.32 E-value=2.1e-06 Score=86.90 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRN 91 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~ 91 (485)
.+||+|||||.+|+++|++|++. |++|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999987 99999999875
No 166
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.32 E-value=1.7e-05 Score=81.79 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=35.6
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
+|+|||||++||+||++|.+.|++|+|+|+++.+|+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999998853
No 167
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.32 E-value=2.7e-05 Score=83.05 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=61.0
Q ss_pred HHHHHhhCcCCCCC-----ceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC----CcEE---EEEc
Q 011476 247 DEDLFKLYPKVKDS-----VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD----KEIF---TKVR 314 (485)
Q Consensus 247 ~~~~~~~~p~~~~g-----~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~----~~v~---~~~~ 314 (485)
.+++.+.+|.+.+. ..-.+++. +... -+..+...+.+.+++.|++++.++.|+++.. +.+. +...
T Consensus 199 ~~e~~~~~P~L~~~~~~~~l~ga~~~~-Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~ 275 (627)
T PLN02464 199 AKESLELFPTLAKKGKDGSLKGTVVYY-DGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN 275 (627)
T ss_pred HHHHHHhCCCCCccccccceeEEEEec-CcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC
Confidence 44555678887654 33333333 2222 2557777888889999999999999999853 3333 3222
Q ss_pred CCCeEEEEecCeEEEccCCCCCcchHHHHHHhC
Q 011476 315 GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG 347 (485)
Q Consensus 315 ~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g 347 (485)
.+|+..++.+|.||.|+| ++...+.+.++
T Consensus 276 ~tg~~~~i~a~~VVnAaG----aws~~l~~~~g 304 (627)
T PLN02464 276 LTGKEFDVYAKVVVNAAG----PFCDEVRKMAD 304 (627)
T ss_pred CCCcEEEEEeCEEEECCC----HhHHHHHHhcc
Confidence 345544689999999999 45545655553
No 168
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.32 E-value=3.1e-07 Score=93.70 Aligned_cols=106 Identities=13% Similarity=0.190 Sum_probs=32.3
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccc---ccc---------C----------------------
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPS---VTC---------G---------------------- 105 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---~~~---------~---------------------- 105 (485)
||||||||+||++||+.+++.|.+|+|||+.+.+|+...... ... +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 799999999999999999999999999999999887431110 000 0
Q ss_pred -----cccccccccchHHHHhhCCCeEEEEEeEEEEEecCCCE---EEEecCCccCCCCCceEEeecCEEEEccCC
Q 011476 106 -----TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKK---VYCRSSQNTNLNGKEEFCMDYDYLVIAMGA 173 (485)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~~---v~~~~~~~~~~~~~~~~~~~yd~lviAtG~ 173 (485)
..++..+..-+.+++.+.|+++ +.++.+.++..+++. |.+.+. + +..++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v-~~~t~v~~v~~~~~~i~~V~~~~~------~-g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV-LLGTRVVDVIRDGGRITGVIVETK------S-GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccc------c-cccccccccccccccc
Confidence 0111122223556666778887 578888888776643 333321 1 1358999999999993
No 169
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.32 E-value=2.3e-06 Score=87.66 Aligned_cols=97 Identities=19% Similarity=0.329 Sum_probs=75.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|++.|.+|+|+++.+.+.. . . ..++...+.+.+++.|++++ .+.++..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-----~-----~-d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-----L-----M-DADMNQPILDELDKREIPYR-LNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-----h-----c-CHHHHHHHHHHHHhcCCEEE-ECCeEEEE
Confidence 47999999999999999999999999999998765321 1 1 12445567778888998874 57888888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+. ..+.+.++. .+.+|.|++|+|.+|+..
T Consensus 216 ~~--~~v~~~~g~----------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 216 NG--NEVTFKSGK----------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eC--CEEEECCCC----------EEEeCEEEECcCCCcChH
Confidence 64 456665443 789999999999998754
No 170
>PLN02612 phytoene desaturase
Probab=98.30 E-value=2.9e-05 Score=81.97 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=39.2
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
....+++|+|||||++|++||++|.+.|++|+|+|+++.+|+..
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 34456899999999999999999999999999999999888753
No 171
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.29 E-value=2.9e-05 Score=73.09 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=86.7
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc----------c-------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN----------M------------------- 275 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~----------~------------------- 275 (485)
.|+|||||+.|+-+|..+++. |.+|.++++...+.. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~--------------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKN--------------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 899999999999999999986 678999988754310 0
Q ss_pred ---------ccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CC--cEEEEEcC------CC---eEEEEecCeEEEccCC
Q 011476 276 ---------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK--EIFTKVRG------NG---ETSSMPYGMVVWSTGI 333 (485)
Q Consensus 276 ---------~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~--~v~~~~~~------~G---~~~~i~~D~vi~a~G~ 333 (485)
...++...+.+.+.+.|++++.++.+.++. ++ .+..+... .| ...++.++.||.|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 112344556667778899999999999875 23 23332211 11 2346999999999994
Q ss_pred CCCcchHHHHHHhCCCCC-------Cce--------eeCCCccccCCCCeEEeccccC
Q 011476 334 APHAIIKDFMKQVGQTNR-------RAL--------ATDEWLRVEGSDSIYALGDCAT 376 (485)
Q Consensus 334 ~~~p~~~~l~~~~g~~~~-------g~i--------~vd~~l~t~~~~~Vya~GD~~~ 376 (485)
..++...+.+.+++... +.+ .|+.+-+ -+|++|++|=.+.
T Consensus 169 -~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~ 223 (254)
T TIGR00292 169 -DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVA 223 (254)
T ss_pred -CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhh
Confidence 23444344555554110 111 1222222 2799999997554
No 172
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.29 E-value=3.7e-06 Score=84.04 Aligned_cols=104 Identities=11% Similarity=0.138 Sum_probs=64.1
Q ss_pred eEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcccCC--CccccccC-------------cccc-------c-----
Q 011476 60 KVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP--LLPSVTCG-------------TVEA-------R----- 110 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~--~~~~~~~~-------------~~~~-------~----- 110 (485)
||+|||||+||+++|..|++. |++|+|+|+.+.++..- .+.....+ .... .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 699999999999999999965 99999999987544310 00000000 0000 0
Q ss_pred ---ccc--cchHHH-HhhCCCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 111 ---SIV--EPVRNI-VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 111 ---~~~--~~~~~~-~~~~gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
..+ ..+.+. ++..+..+ +.+++|..++++ .+++.++. ++.+|.||-|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i-~~~~~V~~v~~~--~v~l~dg~----------~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGV-ILGRKAVGLDAD--GVDLAPGT----------RINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccE-EecCEEEEEeCC--EEEECCCC----------EEEeeEEEECCCCCCC
Confidence 000 011122 23334345 347888888653 47776554 8999999999997754
No 173
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.28 E-value=6.6e-05 Score=77.71 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCceEEEEeC--Cc-EEEEE--cCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCC
Q 011476 278 KRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KE-IFTKV--RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349 (485)
Q Consensus 278 ~~~~~~~~~~l~~~g-V~v~~~~~v~~v~~--~~-v~~~~--~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~ 349 (485)
..+...+.+.+++.| +++++++.|++++. ++ +.+.. ..+|+..++.++.||+|.|.. ...+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~----s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG----ALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc----hHHHHHHcCCC
Confidence 466777778888876 99999999999863 33 33332 234543348999999999942 23666676663
No 174
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.28 E-value=3.5e-06 Score=85.36 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
++.+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3579999999999999999999999999999988653
No 175
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.28 E-value=4.7e-07 Score=66.51 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=31.8
Q ss_pred EECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 63 VLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 63 IIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
|||||++||++|+.|++.|++|+|+|+++.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcce
Confidence 89999999999999999999999999999988753
No 176
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=4e-06 Score=86.69 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++++|||+|+.|+.+|..|++.|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++ +.+..+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~~~------d~~~~~~l~~~l~~~gV~i-~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----PNE------DAEVSKEIAKQYKKLGVKI-LTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----Ccc------CHHHHHHHHHHHHHCCCEE-EECCEEEE
Confidence 35799999999999999999999999999999776432 111 1234455777888899887 46788888
Q ss_pred EecCCCEEE--EecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~v~--~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
++.+++.+. +... +++...+.+|.||+|+|.+|+..
T Consensus 239 i~~~~~~~~v~~~~~------~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 239 IDDNGSKVTVTVSKK------DGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEeCCeEEEEEEec------CCCeEEEEeCEEEECcCcccCCC
Confidence 876655433 3210 11123799999999999998764
No 177
>PRK08013 oxidoreductase; Provisional
Probab=98.28 E-value=2.1e-05 Score=79.70 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 37999999999999999999999999999999865
No 178
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=3.4e-06 Score=86.85 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. . ..++...+.+.+++.|+++ +.++++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~~-----~-~~~~~~~l~~~L~~~GV~i-~~~~~V~~i 234 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-----RG-----F-DPDIRETLVEEMEKKGIRL-HTNAVPKAV 234 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----cc-----c-CHHHHHHHHHHHHHCCcEE-ECCCEEEEE
Confidence 5799999999999999999999999999999876431 11 1 1245556777788899887 467788888
Q ss_pred ecCCC---EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~---~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+++ .+.+.++. .+.+|.||+|+|..|+...
T Consensus 235 ~~~~~g~~~v~~~~g~----------~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 235 EKNADGSLTLTLEDGE----------TLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEcCCceEEEEEcCCc----------EEEeCEEEEeeCCCcCCCC
Confidence 76432 23333332 7899999999999987653
No 179
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.27 E-value=3.5e-06 Score=87.16 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=75.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|+..|.+|+|+++.+.+. +. . ..++...+.+.+++.|+++ +..+.+..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~gI~v-~~~~~v~~i 242 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-----SF-----L-DDEISDALSYHLRDSGVTI-RHNEEVEKV 242 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----Cc-----C-CHHHHHHHHHHHHHcCCEE-EECCEEEEE
Confidence 5899999999999999999999999999999886532 11 1 1245556777788889887 457788888
Q ss_pred ecCCCEEEEe--cCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKKVYCR--SSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~v~~~--~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+..++.+.+. ++. .+.+|.|++|+|.+|+..
T Consensus 243 ~~~~~~~~v~~~~g~----------~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 243 EGGDDGVIVHLKSGK----------KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEeCCeEEEEECCCC----------EEEeCEEEEeecCCcccc
Confidence 7554444433 322 799999999999999765
No 180
>PRK11445 putative oxidoreductase; Provisional
Probab=98.26 E-value=4.8e-06 Score=82.80 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
++||+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 36999999999999999999998 99999998764
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.26 E-value=3.5e-06 Score=86.63 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..++..|.+|+++++.+.+. +. . ..++...+.+.+++.|+++ +.+..+..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~v~~i 233 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-----RG-----F-DDDMRALLARNMEGRGIRI-HPQTSLTSI 233 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-----cc-----c-CHHHHHHHHHHHHHCCCEE-EeCCEEEEE
Confidence 5789999999999999999999999999999876531 11 1 1244455667788889887 457788888
Q ss_pred ecCCCEE--EEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKKV--YCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~v--~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+.....+ .+.++. .+.+|.||+|+|..|+..
T Consensus 234 ~~~~~~~~v~~~~g~----------~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 234 TKTDDGLKVTLSHGE----------EIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEcCCeEEEEEcCCc----------EeecCEEEEeeCCCcCCC
Confidence 7544333 333332 799999999999998764
No 182
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.26 E-value=3.4e-05 Score=79.80 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.9
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
+|+|||||++|+++|+.|.+.|++|+|+|+++.+|+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999998874
No 183
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.26 E-value=2.6e-06 Score=86.53 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=78.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
.++++|||+|++|+.+|..|+..|++|+++|+.++++..... ..+...+.+.++.+|++++ .+..+..+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~-~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELL-LGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEE-eCCceEEE
Confidence 479999999999999999999999999999999887764222 2556668888999998763 67888999
Q ss_pred ecCCCEE-----EEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 138 DAENKKV-----YCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 138 d~~~~~v-----~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
+...+.. ...++. .+++|.+++++|.+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~----------~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDGE----------EIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCCc----------EEEeeEEEEeeccccc
Confidence 8876542 333322 8999999999999986
No 184
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.25 E-value=4.4e-05 Score=75.03 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred ccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC
Q 011476 270 DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG 347 (485)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g 347 (485)
+++....-..+.+.+.+.+++.|++++++++|.+++ ++.+..+.+.+|.+ +++|.||+|+|...+.+...|.++.|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~--i~~~~vvlA~Grsg~dw~~~l~~K~G 242 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEE--IEADYVVLAPGRSGRDWFEMLHKKLG 242 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcE--EecCEEEEccCcchHHHHHHHHHhcC
Confidence 344444456788899999999999999999998886 34467777778876 99999999999776777777888888
Q ss_pred C
Q 011476 348 Q 348 (485)
Q Consensus 348 ~ 348 (485)
+
T Consensus 243 v 243 (486)
T COG2509 243 V 243 (486)
T ss_pred c
Confidence 7
No 185
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.25 E-value=6.1e-07 Score=79.88 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=42.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCe
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVD 126 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 126 (485)
..+||+||||||+|++||++|++.|++|+|||++..+++....-... ++.--+.++...++++.|++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~l---f~~iVVq~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGML---FNKIVVQEEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccc---cchhhhhhhHHHHHHhCCce
Confidence 35799999999999999999999999999999998777631111111 11112333456778888855
No 186
>PRK07846 mycothione reductase; Reviewed
Probab=98.25 E-value=4.7e-06 Score=85.69 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=71.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ .++...+.+++ +.++++ +.+.++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~d-~~~~~~l~~l~-~~~v~i-~~~~~v~~i 232 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----RH-----LD-DDISERFTELA-SKRWDV-RLGRNVVGV 232 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----cC-HHHHHHHHHHH-hcCeEE-EeCCEEEEE
Confidence 5799999999999999999999999999999886532 11 11 12333344444 456776 357788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+++.+.+...+ + ..+.+|.|++|+|.+|+...
T Consensus 233 ~~~~~~v~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 233 SQDGSGVTLRLDD-----G---STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEcCCEEEEEECC-----C---cEeecCEEEEEECCccCccc
Confidence 7665544433211 1 17999999999999998754
No 187
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.25 E-value=7.2e-06 Score=85.53 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
...||||||+|.||++||+.+++.|.+|+|||+.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 357999999999999999999999999999999876654
No 188
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=5.2e-06 Score=85.93 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=75.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|+..|.+|+++++... ++. . ..++...+.+.+++.|+++. .+..+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~------l~~-----~-~~~~~~~l~~~l~~~GI~v~-~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRV------LSQ-----E-DPAVGEAIEAAFRREGIEVL-KQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC------CCC-----C-CHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 57999999999999999999999999999986421 111 1 12455567788888998873 56788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+++.+.+... ++ .+.+|.||+|+|.+|+...
T Consensus 245 ~~~~~~~~v~~~------~~---~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 245 DYNGREFILETN------AG---TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEcCCEEEEEEC------CC---EEEeCEEEEccCCCCCcCC
Confidence 876665554432 11 6999999999999998653
No 189
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=5.4e-06 Score=85.67 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++|+|||+|+.|+.+|..+++.|.+|+|+++.+.+. +. .+ .++...+.+.+++.|+++ +.+..+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~~-----~d-~~~~~~l~~~l~~~gV~i-~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----PG-----TD-TETAKTLQKALTKQGMKF-KLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----CC-----CC-HHHHHHHHHHHHhcCCEE-EECcEEEE
Confidence 36899999999999999999999999999999876432 11 11 134455677788889887 35778888
Q ss_pred EecCCCEEE--EecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~v~--~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+..+++.+. +.+.. +++...+.+|.|++|+|..|+..
T Consensus 241 i~~~~~~v~v~~~~~~-----~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 241 ATAGADGVSLTLEPAA-----GGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEcCCeEEEEEEEcC-----CCceeEEEeCEEEEccCCccccc
Confidence 876544333 33211 11224799999999999998764
No 190
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.24 E-value=5.4e-06 Score=83.53 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.3
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999998864
No 191
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.24 E-value=3.8e-06 Score=84.39 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
.+||+|||||++|+++|++|++.|++|+|+|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5799999999999999999999999999999864
No 192
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.24 E-value=4.4e-06 Score=84.45 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
..++|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35899999999999999999999999999999875
No 193
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.24 E-value=5.4e-06 Score=83.83 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=32.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999998863
No 194
>PRK07190 hypothetical protein; Provisional
Probab=98.23 E-value=5.9e-06 Score=85.59 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+||||||+|+++|..|++.|.+|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999999999999999999999999998854
No 195
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.22 E-value=2.1e-06 Score=78.44 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.4
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
.+|+|||+|+||++||+.|+..|++|+|+||....++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 4699999999999999999999999999998865554
No 196
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.21 E-value=1.4e-05 Score=82.15 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=34.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~~~ 96 (485)
..+||||||||.+|+++|+.|++. +.+|+|+|+.+.+++.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~ 46 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIE 46 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchh
Confidence 356999999999999999999965 8999999996566653
No 197
>PRK07045 putative monooxygenase; Reviewed
Probab=98.21 E-value=4.9e-06 Score=84.00 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999988643
No 198
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=6.8e-06 Score=84.42 Aligned_cols=101 Identities=26% Similarity=0.406 Sum_probs=76.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++++|||+|+.|+.+|..|...|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++. .+.++..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~~------~~~~~~~l~~~l~~~gV~v~-~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-----PRE------DRDIADNIATILRDQGVDII-LNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-----CCc------CHHHHHHHHHHHHhCCCEEE-eCCEEEE
Confidence 35799999999999999999999999999999876432 111 12444556778888998873 5778888
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
++.+++.+.+.... + ++.+|.|++|+|.+|+..
T Consensus 225 i~~~~~~v~v~~~~------g---~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 225 ISHHENQVQVHSEH------A---QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEcCCEEEEEEcC------C---eEEeCEEEEeecCCcCCC
Confidence 88765655554321 1 688999999999999864
No 199
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.21 E-value=4.8e-06 Score=85.58 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|+..|.+|+|+++.+.+. +.. ..++...+.+.+++.|+++. .+..+..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~~~------d~~~~~~~~~~l~~~gI~i~-~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----RSF------DSMISETITEEYEKEGINVH-KLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----ccc------CHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 5799999999999999999999999999999876532 111 11445557778888998873 56778888
Q ss_pred ecCCC---EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~---~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
..+.. .+.++++ ...+.+|.|++|+|..|+..
T Consensus 234 ~~~~~~~~~v~~~~g---------~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 234 EKTVEGKLVIHFEDG---------KSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEeCCceEEEEECCC---------cEEEEcCEEEEeeCCCcCcc
Confidence 65422 2333332 12799999999999999865
No 200
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.20 E-value=8.8e-06 Score=84.01 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
+||+|||+|.||++||..+++.|.+|+|+|+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
No 201
>PRK09126 hypothetical protein; Provisional
Probab=98.20 E-value=9.3e-06 Score=82.08 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=32.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 47999999999999999999999999999998764
No 202
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.19 E-value=5.4e-06 Score=83.61 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
.++|+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999999999997
No 203
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.19 E-value=6.8e-06 Score=82.76 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~ 92 (485)
||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998753
No 204
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.19 E-value=7.7e-06 Score=82.73 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.||+||||||||++||+.|++.|++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998754
No 205
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=6e-06 Score=83.36 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 46999999999999999999999999999998754
No 206
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.17 E-value=8.1e-06 Score=84.37 Aligned_cols=100 Identities=14% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|+..|.+|+++++.+.+.. . . ..++...+.+.+++.|+++ +.+.++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-d~~~~~~l~~~L~~~gV~i-~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----G-----E-DADAAEVLEEVFARRGMTV-LKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----C-----C-CHHHHHHHHHHHHHCCcEE-EcCCEEEEE
Confidence 47999999999999999999999999999998764321 1 1 1134455677888899887 357778888
Q ss_pred ecCCCEEEEe--cCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCR--SSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~--~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+...+.+.+. ++. ++.+|.|++|+|..|+...
T Consensus 245 ~~~~~~~~v~~~~g~----------~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 245 ERTGDGVVVTLTDGR----------TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEeCCEEEEEECCCc----------EEEecEEEEeecCCcCCCC
Confidence 6544444333 322 7999999999999998653
No 207
>PRK06185 hypothetical protein; Provisional
Probab=98.17 E-value=1e-05 Score=82.25 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
..+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45799999999999999999999999999999875
No 208
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=9.2e-06 Score=85.84 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=34.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3567999999999999999999999999999998864
No 209
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.15 E-value=1.2e-05 Score=84.73 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999998864
No 210
>PLN02507 glutathione reductase
Probab=98.15 E-value=1e-05 Score=84.17 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++|+|||+|+.|+.+|..|+..|.+|+|+++.+.+. +. . ..++...+.+.+++.|++++ .+..+..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~GI~i~-~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----RG-----F-DDEMRAVVARNLEGRGINLH-PRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----cc-----c-CHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999876421 11 1 12445556777888898874 67788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+...+.+.+.... + ..+.+|.|++|+|.+|+...
T Consensus 271 ~~~~~~~~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 271 TKTEGGIKVITDH-----G---EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEeCCeEEEEECC-----C---cEEEcCEEEEeecCCCCCCC
Confidence 7644444443221 1 17999999999999998653
No 211
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.15 E-value=4.8e-05 Score=71.78 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=59.8
Q ss_pred HHHHHhhCcC---CCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe----CCcEEEEEcCCCeE
Q 011476 247 DEDLFKLYPK---VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT----DKEIFTKVRGNGET 319 (485)
Q Consensus 247 ~~~~~~~~p~---~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~----~~~v~~~~~~~G~~ 319 (485)
.+++.++||. ++. -.+-+++....+. ........++..+++.|+.|+.+..++.++ ++....+.+.+|..
T Consensus 122 seEvrk~fP~~~~l~d-~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~ 198 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPD-GWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI 198 (399)
T ss_pred HHHHHHhCCCCccCCc-chhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCe
Confidence 5567788883 222 2334443333222 234556788899999999999999999887 44444444467886
Q ss_pred EEEecCeEEEccCCCCCcchHHHHH
Q 011476 320 SSMPYGMVVWSTGIAPHAIIKDFMK 344 (485)
Q Consensus 320 ~~i~~D~vi~a~G~~~~p~~~~l~~ 344 (485)
+-++.+|+++| +++..|+.
T Consensus 199 --Y~akkiI~t~G----aWi~klL~ 217 (399)
T KOG2820|consen 199 --YHAKKIIFTVG----AWINKLLP 217 (399)
T ss_pred --eecceEEEEec----HHHHhhcC
Confidence 88999999999 55545554
No 212
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=1.6e-06 Score=88.99 Aligned_cols=43 Identities=37% Similarity=0.501 Sum_probs=39.6
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
....+++|+|||||+|||+||++|...|++|+|+|.++..||.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4456789999999999999999999999999999999999984
No 213
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.13 E-value=2.3e-05 Score=80.48 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=73.5
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc---------------------------
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM--------------------------- 275 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~--------------------------- 275 (485)
.++|+|||+|++|+-+|..|.+. |.+|+++++++.+...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~--------------G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE--------------GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc--------------CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 46999999999999999999885 6788888876532100
Q ss_pred ---------------c------------------cHHHHHHHHHHHHhCCcE--EEcCceEEEEeCC--cEEEEEcC-CC
Q 011476 276 ---------------F------------------DKRITAFAEEKFSRDGID--VKLGSMVVKVTDK--EIFTKVRG-NG 317 (485)
Q Consensus 276 ---------------~------------------~~~~~~~~~~~l~~~gV~--v~~~~~v~~v~~~--~v~~~~~~-~G 317 (485)
+ ..++.+++++..+..|+. +.++++|++|+.. ...+.... ++
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 0 135667778888888988 8999999999753 33343322 22
Q ss_pred eEEEEecCeEEEccCCCCCcch
Q 011476 318 ETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 318 ~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
...+..+|.||+|+|....|+.
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~~ 177 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPNV 177 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCcC
Confidence 3334679999999996545554
No 214
>PRK06753 hypothetical protein; Provisional
Probab=98.12 E-value=8.1e-06 Score=81.95 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=31.8
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.+|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999998864
No 215
>PRK13748 putative mercuric reductase; Provisional
Probab=98.12 E-value=1.1e-05 Score=85.72 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|.+.|.+|+|+++.+. ++.. ..++...+.+.+++.|+++ +.+..+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~------l~~~------d~~~~~~l~~~l~~~gI~i-~~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL------FFRE------DPAIGEAVTAAFRAEGIEV-LEHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc------cccc------CHHHHHHHHHHHHHCCCEE-EcCCEEEEE
Confidence 57999999999999999999999999999997521 1111 1244556778888899887 457788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
..++..+.+.... + .+.+|.|++|+|..|+..
T Consensus 337 ~~~~~~~~v~~~~------~---~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 337 AHVDGEFVLTTGH------G---ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EecCCEEEEEecC------C---eEEeCEEEEccCCCcCCC
Confidence 7655555544321 1 689999999999999875
No 216
>PLN02661 Putative thiazole synthesis
Probab=98.12 E-value=1.5e-05 Score=77.47 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC-CCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~-~g~~V~lie~~~~~~~ 95 (485)
...||+|||||++|++||++|++ .|++|+|||+...+++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 35799999999999999999985 4899999999877654
No 217
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.11 E-value=1.5e-05 Score=80.68 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=30.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC---CCcEEEEcCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP---SYDVQVISPR 90 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~---g~~V~lie~~ 90 (485)
.++|+||||||||+++|+.|++. |++|+|+|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 47999999999999999999987 9999999984
No 218
>PRK14727 putative mercuric reductase; Provisional
Probab=98.11 E-value=1.3e-05 Score=83.20 Aligned_cols=100 Identities=12% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|...|.+|+|+++.. + ++.. + .++...+.+.+++.|+++ +.+..+..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~-----l~~~-----d-~~~~~~l~~~L~~~GV~i-~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L-----LFRE-----D-PLLGETLTACFEKEGIEV-LNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C-----CCcc-----h-HHHHHHHHHHHHhCCCEE-EcCcEEEEE
Confidence 5799999999999999999999999999998642 1 1111 1 134455777788889887 356788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
...++.+.+.... + ++.+|.+|+|+|..|+...
T Consensus 255 ~~~~~~~~v~~~~------g---~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 255 EHDDNGFVLTTGH------G---ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEeCCEEEEEEcC------C---eEEeCEEEEccCCCCCccC
Confidence 7655555544321 1 6889999999999998653
No 219
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.11 E-value=1.1e-05 Score=83.47 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=72.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcC---CCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~---~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
.+++++|||||+.|+.+|..+. ..|.+|+|+++.+.+. +. . ..++...+.+.+++.|+++. .+..
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~~-----~-d~~~~~~l~~~L~~~GI~i~-~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----RG-----F-DSTLRKELTKQLRANGINIM-TNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----cc-----c-CHHHHHHHHHHHHHcCCEEE-cCCE
Confidence 3579999999999999996554 4599999999876532 11 1 12555667778888998873 5677
Q ss_pred EEEEecCC-C--EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 134 CFKIDAEN-K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 134 v~~id~~~-~--~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+..+.... . .+.+.++. .+.+|.+++|+|..|+..
T Consensus 254 v~~i~~~~~~~~~v~~~~g~----------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGK----------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEcCCceEEEEEcCCC----------EEEcCEEEEeeCCCcCcc
Confidence 88886532 2 34443332 799999999999998765
No 220
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.11 E-value=1.6e-05 Score=81.88 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||+|+.|+.+|..|+..|.+|++|++.+.+. +. .+ .++...+.+.++ .++++ +.+.++..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~d-~~~~~~l~~~~~-~gI~i-~~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-----RH-----LD-EDISDRFTEIAK-KKWDI-RLGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-----cc-----cC-HHHHHHHHHHHh-cCCEE-EeCCEEEEE
Confidence 5799999999999999999999999999999876532 11 11 133334444443 57776 357788888
Q ss_pred ecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+++.+.+.... + ..+.+|.|++|+|.+|+...
T Consensus 236 ~~~~~~v~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 236 EQDGDGVTLTLDD-----G---STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEcCCeEEEEEcC-----C---CEEEcCEEEEeeccCcCCCC
Confidence 7655544443211 1 17999999999999998653
No 221
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.11 E-value=2.2e-05 Score=81.70 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=30.9
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
+||+|||||+||+.+|..++..|.+|+|+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
No 222
>PRK07588 hypothetical protein; Provisional
Probab=98.11 E-value=1.1e-05 Score=81.50 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4899999999999999999999999999998764
No 223
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.10 E-value=9.8e-06 Score=82.16 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..+|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 36899999999999999999999999999998764
No 224
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.10 E-value=5.7e-05 Score=71.04 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
..+.+.+...|++.|..++.+..|++.+ .+.|+...+.+.....+.+|..|+|+|
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsG 314 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASG 314 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecc
Confidence 4567888999999999999999999875 456666555566665577999999999
No 225
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.09 E-value=1.2e-05 Score=88.27 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
.++++|||||+.|+.+|..|+..|.+|+|+++.+.+.. . .++ ......+.+.+++.||+++ .+..+..+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----~----~ld-~~~~~~l~~~l~~~GV~v~-~~~~v~~i 208 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----K----QLD-QTAGRLLQRELEQKGLTFL-LEKDTVEI 208 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----h----hcC-HHHHHHHHHHHHHcCCEEE-eCCceEEE
Confidence 47899999999999999999999999999998764321 0 111 1333446677888998874 56677777
Q ss_pred ecCCC--EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~--~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
..+.. .+.+.++. .+.+|.||+|+|.+|+..
T Consensus 209 ~~~~~~~~v~~~dG~----------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 209 VGATKADRIRFKDGS----------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EcCCceEEEEECCCC----------EEEcCEEEECCCCCcCcH
Confidence 65443 34555543 899999999999998764
No 226
>PRK06996 hypothetical protein; Provisional
Probab=98.09 E-value=1.3e-05 Score=81.10 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCC----CcEEEEcCCC
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPS----YDVQVISPRN 91 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g----~~V~lie~~~ 91 (485)
...+.++|+||||||+|+++|..|++.| .+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3455689999999999999999999876 4799999864
No 227
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.09 E-value=3.3e-05 Score=80.95 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=72.0
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCc--cc--------cc----cccHHHHHHHHHHHH
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD--HI--------LN----MFDKRITAFAEEKFS 289 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~--~~--------l~----~~~~~~~~~~~~~l~ 289 (485)
.+++|||||+.|+.+|..+++. |.+|+++.... .+ ++ ....++.+.+.+.++
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 277 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARK--------------GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVK 277 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999986 68999886531 11 01 124567788889999
Q ss_pred hCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 290 RDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 290 ~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.|+++++++++.++..+ ...+.. .+|+. +.+|.||+|+|.
T Consensus 278 ~~gv~i~~~~~V~~I~~~~~~~~V~~-~~g~~--i~a~~vViAtG~ 320 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAAGLIEVEL-ANGAV--LKAKTVILATGA 320 (517)
T ss_pred HCCCEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEcCEEEECCCC
Confidence 999999999999999754 333333 55654 899999999994
No 228
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.09 E-value=5.3e-06 Score=82.17 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC-------------CCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP-------------SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~-------------g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 124 (485)
.-.++|+|||+.|+.+|-.|+.. ..+|+|+|+.+... |.. ++++.....+.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-----p~~------~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-----PMF------PPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-----cCC------CHHHHHHHHHHHHHCC
Confidence 45799999999999999888611 24899999887533 211 1255566788999999
Q ss_pred CeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 125 v~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
|++. .++.|+.++++ .|+++++. ..++++.+|.|+|.+++..
T Consensus 224 V~v~-l~~~Vt~v~~~--~v~~~~g~---------~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 224 VEVL-LGTPVTEVTPD--GVTLKDGE---------EEIPADTVVWAAGVRASPL 265 (405)
T ss_pred CEEE-cCCceEEECCC--cEEEccCC---------eeEecCEEEEcCCCcCChh
Confidence 9984 78899999874 56666653 1599999999999887543
No 229
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.08 E-value=5.8e-05 Score=77.44 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhcCC----CCCcEEEEcCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRN 91 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~----~g~~V~lie~~~ 91 (485)
++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 589999999999999999998 799999999954
No 230
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.08 E-value=1e-05 Score=81.58 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
++|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 699999999999999999999999999999764
No 231
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.08 E-value=4.5e-05 Score=72.21 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccc---------cccCcccccc-cccchHHHHhhCCCe
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPS---------VTCGTVEARS-IVEPVRNIVRKKNVD 126 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~gv~ 126 (485)
...+|+|||+|++||+||+.|.+ .++|||+|...+.|+....-. +..|.+-..+ ....+..+++..|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 46799999999999999999874 589999999999998642221 1122221222 233466777877855
No 232
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.08 E-value=3.5e-05 Score=78.62 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcE---EEEEcCCCeEEEEecCeEEEccCC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v---~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
..+...+.+.+++.||+|++++.++++. ++++ .+....+|+...+.++.||+|+|-
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 5677888899999999999999999984 3444 344335788778999999999993
No 233
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.07 E-value=1.7e-05 Score=87.08 Aligned_cols=101 Identities=23% Similarity=0.415 Sum_probs=73.1
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc--c-cc--------cHHHHHHHHHHHHhCC
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--N-MF--------DKRITAFAEEKFSRDG 292 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l--~-~~--------~~~~~~~~~~~l~~~g 292 (485)
++|||||+|+.|+.+|..|.+... ..+.+||++.+.+++. + .+ ..++.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 489999999999999999987521 1357999999887642 1 11 1122222346678899
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
|+++.++.|.+++.....+.. .+|+. +.+|.+|+||| ..|..
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~-~~G~~--i~yD~LVIATG--s~p~~ 115 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHS-SAGRT--VFYDKLIMATG--SYPWI 115 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEE-CCCcE--EECCEEEECCC--CCcCC
Confidence 999999999999876544443 46765 99999999999 55544
No 234
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.07 E-value=1.9e-05 Score=81.10 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=32.8
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCCccc
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAF 95 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~~~~ 95 (485)
||||||+|.||++||+.+++.| .+|+|+|+.+..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 6999999999999999999999 99999998876544
No 235
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.07 E-value=1.6e-05 Score=80.21 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999998863
No 236
>PRK10262 thioredoxin reductase; Provisional
Probab=98.07 E-value=2.1e-05 Score=77.20 Aligned_cols=104 Identities=22% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
..++|+|||+|+.|+.+|..|+..+.+|+++++.+.+.. . ..+...+.+.+++.++++ +.+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~---------~----~~~~~~~~~~l~~~gV~i-~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---------E----KILIKRLMDKVENGNIIL-HTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC---------C----HHHHHHHHhhccCCCeEE-EeCCEEEE
Confidence 357999999999999999999999999999998764311 0 123344566677788776 35678888
Q ss_pred EecCCC---EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~~~---~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+..+.. .+.+.++. .+++...+.+|.||+++|..|+..
T Consensus 211 v~~~~~~~~~v~~~~~~----~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQ----NSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEcCCccEEEEEEEEcC----CCCeEEEEECCEEEEEeCCccChh
Confidence 876542 35555432 012234799999999999998764
No 237
>PRK07121 hypothetical protein; Validated
Probab=98.06 E-value=2.7e-05 Score=81.16 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
...||||||+|.||++||+.+++.|.+|+|+|+.+..++
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 467999999999999999999999999999999876554
No 238
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=1.6e-05 Score=82.19 Aligned_cols=103 Identities=19% Similarity=0.346 Sum_probs=73.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|...|.+|+||++.+.+. +. .+ .++...+.+.+++. +++ ..+..+..+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-----~~-----~d-~~~~~~~~~~l~~~-v~i-~~~~~v~~i 240 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-----PA-----AD-KDIVKVFTKRIKKQ-FNI-MLETKVTAV 240 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-----Cc-----CC-HHHHHHHHHHHhhc-eEE-EcCCEEEEE
Confidence 5799999999999999999999999999999886532 11 11 13444456666666 777 357788888
Q ss_pred ecCCCEEEE--ecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~v~~--~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
...++.+.+ .++. ++..++.+|.||+|+|.+|+...
T Consensus 241 ~~~~~~~~v~~~~~~------~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 241 EAKEDGIYVTMEGKK------APAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEcCCEEEEEEEeCC------CcceEEEeCEEEEeecccccCCc
Confidence 755444433 3221 11237999999999999998753
No 239
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.9e-06 Score=85.04 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=37.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
+||+|+|||+|||+||++|++.|++|||+|+++++|+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 589999999999999999999999999999999999964
No 240
>PTZ00058 glutathione reductase; Provisional
Probab=98.05 E-value=2.3e-05 Score=82.19 Aligned_cols=102 Identities=19% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++|+|||+|+.|+.+|..|+..|.+|+|+++.+.+. +. . ..++...+.+.+++.|+++ +.+..+..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-----~~-----~-d~~i~~~l~~~L~~~GV~i-~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-----RK-----F-DETIINELENDMKKNNINI-ITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-----cc-----C-CHHHHHHHHHHHHHCCCEE-EeCCEEEEE
Confidence 6899999999999999999999999999999876422 11 1 1244555777888899887 467778888
Q ss_pred ecCCC-EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+.... .+.+.... + ...+.+|.|++|+|..|+..
T Consensus 305 ~~~~~~~v~v~~~~-----~--~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 305 EKVKEKNLTIYLSD-----G--RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EecCCCcEEEEECC-----C--CEEEECCEEEECcCCCCCcc
Confidence 75432 23322100 1 13799999999999988754
No 241
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.05 E-value=1.6e-05 Score=85.79 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
.++|+|||||.+|+++|++|++.|++|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999874
No 242
>PRK05868 hypothetical protein; Validated
Probab=98.05 E-value=3.1e-05 Score=77.62 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998754
No 243
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.05 E-value=1.9e-05 Score=81.78 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|+..|.+|+|+++. . +++.. ..++...+.+.+++.|+++. .+..+..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-----~l~~~------d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 246 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-----LLRGF------DQDCANKVGEHMEEHGVKFK-RQFVPIKV 246 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-----ccccc------CHHHHHHHHHHHHHcCCEEE-eCceEEEE
Confidence 468999999999999999999999999999863 2 11111 12445566778888998874 56666666
Q ss_pred ecCCCE--EEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
...+.. +.+.++. +..++.+|.|++|+|..|+..
T Consensus 247 ~~~~~~~~v~~~~~~-------~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 247 EQIEAKVKVTFTDST-------NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEcCCeEEEEEecCC-------cceEEEeCEEEEEecCCcCCC
Confidence 644333 3333321 112789999999999998765
No 244
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.05 E-value=4.2e-05 Score=69.58 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=62.1
Q ss_pred EEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCce-EEEEecCccccc--------------c----------------
Q 011476 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHILN--------------M---------------- 275 (485)
Q Consensus 227 vVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~-Vtlv~~~~~~l~--------------~---------------- 275 (485)
+|||||+.|+-+|..|.+. |.+ |+++++.+.+.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--------------g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--------------GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--------------T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhC--------------CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 6999999999999999997 456 888887643210 0
Q ss_pred -------------ccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchH
Q 011476 276 -------------FDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (485)
Q Consensus 276 -------------~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (485)
..+++.+++++.+++.+++++++++|+++.. ++..+.. .++.. +.||.||+|+|....|...
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~~--~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGRT--IRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS-E--EEEEEEEE---SSCSB---
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecce--eeeeeEEEeeeccCCCCcc
Confidence 0123456778888899999999999999964 4444443 56643 8899999999965567654
Q ss_pred H
Q 011476 341 D 341 (485)
Q Consensus 341 ~ 341 (485)
.
T Consensus 144 ~ 144 (203)
T PF13738_consen 144 D 144 (203)
T ss_dssp S
T ss_pred c
Confidence 3
No 245
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.04 E-value=2.5e-05 Score=80.89 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
..||||||+|+||++||+.+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999886
No 246
>PLN02985 squalene monooxygenase
Probab=98.04 E-value=3.9e-05 Score=79.96 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
....+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3456799999999999999999999999999999864
No 247
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=4.2e-05 Score=81.86 Aligned_cols=36 Identities=36% Similarity=0.553 Sum_probs=32.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...||+|||+|.||++||..+++.|.+|+|+|+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999997543
No 248
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.03 E-value=1.7e-05 Score=79.70 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
.+|+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
No 249
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.03 E-value=6.3e-05 Score=78.42 Aligned_cols=138 Identities=18% Similarity=0.308 Sum_probs=87.1
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc----------------------------
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------------------------- 275 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~---------------------------- 275 (485)
|+|+|||+|++|+-.|..|.+. |.+++++++.+.+...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--------------g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--------------GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--------------T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHC--------------CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 5999999999999999999885 7899999887643210
Q ss_pred ---c-----------cHHHHHHHHHHHHhCCc--EEEcCceEEEEeC--C-----cEEEEEcCCCeEEEEecCeEEEccC
Q 011476 276 ---F-----------DKRITAFAEEKFSRDGI--DVKLGSMVVKVTD--K-----EIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 276 ---~-----------~~~~~~~~~~~l~~~gV--~v~~~~~v~~v~~--~-----~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
+ ..++.++++.+.+.-++ .+.++++|++++. + +-.+....+|+..+..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 14577888888887776 5889999999963 1 2334444567666677999999999
Q ss_pred CCCCcchHHHHHHhCCCC-CCceeeCCCccc---cCCCCeEEeccccC
Q 011476 333 IAPHAIIKDFMKQVGQTN-RRALATDEWLRV---EGSDSIYALGDCAT 376 (485)
Q Consensus 333 ~~~~p~~~~l~~~~g~~~-~g~i~vd~~l~t---~~~~~Vya~GD~~~ 376 (485)
....|+...- .--|++. +|.+.--..++. -.-+.|-++|-...
T Consensus 148 ~~~~P~~P~~-~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEP-SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB------CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChh-hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 8777876430 0113322 455553333332 12356888887643
No 250
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=1.7e-05 Score=81.92 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . . ..++...+.+.+++. +++ +.+..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-d~~~~~~~~~~l~~~-I~i-~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-----L-----E-DPEVSKQAQKILSKE-FKI-KLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----c-----h-hHHHHHHHHHHHhhc-cEE-EcCCEEEE
Confidence 357999999999999999999999999999998865321 1 1 124455566777777 887 46778888
Q ss_pred EecCCC-EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 137 IDAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 137 id~~~~-~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++..++ .+.+... .++...+.+|.|++|+|..|+...
T Consensus 235 i~~~~~~~v~~~~~------~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 235 VEKSGDEKVEELEK------GGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEcCCceEEEEEc------CCceEEEEeCEEEEccCCccCCCC
Confidence 876543 4444210 111237999999999999998763
No 251
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.03 E-value=5e-05 Score=79.52 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=71.5
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCc--ccc-----------c-cccHHHHHHHHHHH
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD--HIL-----------N-MFDKRITAFAEEKF 288 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~--~~l-----------~-~~~~~~~~~~~~~l 288 (485)
..+|+|||||+.|+.+|..+++. |.+|++++... .+. + ....++...+.+.+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 277 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARK--------------GLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHI 277 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHH
Confidence 45899999999999999999986 68999986421 111 0 12356777888888
Q ss_pred HhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 289 SRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
++.||+++.+++|.+++.+ ...+.. .+|.. +.+|.+|+|+|.
T Consensus 278 ~~~gv~i~~~~~V~~I~~~~~~~~v~~-~~g~~--i~~d~lIlAtGa 321 (515)
T TIGR03140 278 KQYPIDLMENQRAKKIETEDGLIVVTL-ESGEV--LKAKSVIVATGA 321 (515)
T ss_pred HHhCCeEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEECCCC
Confidence 9999999999999998643 244433 45654 899999999994
No 252
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.03 E-value=2.1e-05 Score=80.24 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=71.8
Q ss_pred CeEEEECCcHHHHHHHHhcCC--------------CCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNN--------------PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~--------------~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 124 (485)
++++|||||+.|+.+|..|+. .+.+|+||++.+.+. +. . ...+.....+.+++.|
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-----~~-----~-~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-----GS-----F-DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-----cc-----C-CHHHHHHHHHHHHHCC
Confidence 489999999999999998863 478999999876532 11 1 1144556778889999
Q ss_pred CeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 125 v~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
|++ +.+..+..++. ..+.++++. ++.+|.+|+++|..|+
T Consensus 243 V~v-~~~~~v~~v~~--~~v~~~~g~----------~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDI-RTKTAVKEVLD--KEVVLKDGE----------VIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEE-EeCCeEEEEeC--CEEEECCCC----------EEEccEEEEccCCCCc
Confidence 887 35788888875 357676654 8999999999998876
No 253
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.02 E-value=2.9e-05 Score=80.99 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..+||+|||||..|+++|+.|+..|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 358999999999999999999999999999998754
No 254
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.01 E-value=1.6e-05 Score=81.03 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=31.4
Q ss_pred CeEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCCc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYF 93 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~~ 93 (485)
.+|+|||||++||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999988 599999988653
No 255
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.01 E-value=2.8e-05 Score=80.99 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
+++++|||||+.|+.+|..|+..|.+|+|+++.. . ++.. ..++...+.+.+++.|+++ +.+..+..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~-----l~~~------d~~~~~~l~~~l~~~GV~i-~~~~~v~~v 248 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-P-----LRGF------DRQCSEKVVEYMKEQGTLF-LEGVVPINI 248 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-c-----cccC------CHHHHHHHHHHHHHcCCEE-EcCCeEEEE
Confidence 4699999999999999999999999999998632 1 1111 1134456777888899886 356666666
Q ss_pred ecCCCE--EEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
...... +.+.++. .+.+|.|++|+|.+|+...
T Consensus 249 ~~~~~~~~v~~~~g~----------~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 249 EKMDDKIKVLFSDGT----------TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEcCCeEEEEECCCC----------EEEcCEEEEeeCCCCCccc
Confidence 543333 3333332 6899999999999998653
No 256
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.01 E-value=1.4e-05 Score=72.59 Aligned_cols=139 Identities=26% Similarity=0.470 Sum_probs=94.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc---cccc-----------HHHH--H--HHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL---NMFD-----------KRIT--A--FAEE 286 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l---~~~~-----------~~~~--~--~~~~ 286 (485)
+|+|||||+.|+.+|..|.+. +.+|+++++.+... ..+. .... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--------------~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--------------GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcC--------------CCeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999974 78999997765321 0000 0011 1 3344
Q ss_pred HHHhCCcEEEcCceEEEEeCCcE-------EEEEcCCCeEEEEecCeEEEccCCCCC-cchH---------------HHH
Q 011476 287 KFSRDGIDVKLGSMVVKVTDKEI-------FTKVRGNGETSSMPYGMVVWSTGIAPH-AIIK---------------DFM 343 (485)
Q Consensus 287 ~l~~~gV~v~~~~~v~~v~~~~v-------~~~~~~~G~~~~i~~D~vi~a~G~~~~-p~~~---------------~l~ 343 (485)
.+...+++++.++++.+++...- .......++..++.+|.||+|+|..+. |+++ .+.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 45778999999999999975321 222212344456999999999994322 1111 111
Q ss_pred ------------------HHhCC--CCCCceeeCCCccccCCCCeEEeccccCCC
Q 011476 344 ------------------KQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (485)
Q Consensus 344 ------------------~~~g~--~~~g~i~vd~~l~t~~~~~Vya~GD~~~~~ 378 (485)
+.+++ +.+|++.||+++|| +.|||||+|||+..+
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccC
Confidence 45555 57899999999998 899999999999764
No 257
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.99 E-value=9.7e-05 Score=72.94 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=55.2
Q ss_pred HhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-------ccHH------HHHHHHH
Q 011476 220 RKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FDKR------ITAFAEE 286 (485)
Q Consensus 220 ~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-------~~~~------~~~~~~~ 286 (485)
..-.++++|||||..|++.|..|++. |.+|+|+++.+.+... |+.. +...+.+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~--------------G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~ 186 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADM--------------GFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVE 186 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHc--------------CCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhh
Confidence 34567999999999999999999997 7999999999877432 2221 1233334
Q ss_pred HHHhCCcEEEcCceEEEEeC
Q 011476 287 KFSRDGIDVKLGSMVVKVTD 306 (485)
Q Consensus 287 ~l~~~gV~v~~~~~v~~v~~ 306 (485)
.-...+|++++.++|+++++
T Consensus 187 v~~hp~i~l~TyaeV~ev~G 206 (622)
T COG1148 187 VSNHPNIELITYAEVEEVSG 206 (622)
T ss_pred hccCCceeeeeeeeeeeecc
Confidence 44456899999999999764
No 258
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.99 E-value=2.2e-05 Score=78.59 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=67.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc--ccc---------cHHHHHHHHHHHHhCCc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--NMF---------DKRITAFAEEKFSRDGI 293 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l--~~~---------~~~~~~~~~~~l~~~gV 293 (485)
+|||||||+.|+.+|..+.+.. .++.+|+|+++.+... +.+ ..++...+.+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 5899999999999999886531 1368999999887532 111 12233345567778899
Q ss_pred EEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 294 DVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 294 ~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+++.+ .|++++.++-.+.. .+|++ +.+|.+|+|+|.
T Consensus 70 ~~~~~-~v~~id~~~~~V~~-~~g~~--~~yD~LviAtG~ 105 (364)
T TIGR03169 70 RFVIA-EATGIDPDRRKVLL-ANRPP--LSYDVLSLDVGS 105 (364)
T ss_pred EEEEE-EEEEEecccCEEEE-CCCCc--ccccEEEEccCC
Confidence 99875 79999865433333 45665 999999999994
No 259
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.99 E-value=1.8e-05 Score=80.31 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
.++|+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 469999999999999999999999999999985
No 260
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.99 E-value=2.9e-05 Score=76.75 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=80.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~i 137 (485)
..+||++|+|..|+.+|..|...+.+||+|++++.+. +. +...++...+..+++++|+++ +..+.+.++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y~e~kgVk~-~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDYYENKGVKF-YLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hh-----hhhHHHHHHHHHHHHhcCeEE-EEecceeec
Confidence 5689999999999999999999999999999986522 11 122366677889999999886 356667666
Q ss_pred ecCC--C--EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 011476 138 DAEN--K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (485)
Q Consensus 138 d~~~--~--~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~ 181 (485)
+... + .|.+.+++ .+.+|-||+.+|++|++....
T Consensus 282 ~~~~~Gev~~V~l~dg~----------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGK----------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ccCCCCcEEEEEeccCC----------EeccCeEEEeecccccccccc
Confidence 5443 3 45555655 999999999999999987665
No 261
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.98 E-value=2.6e-05 Score=78.65 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
.++++|+|||||.+|+++|++|++.|.+|+|+|+..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 356899999999999999999999999999999764
No 262
>PRK07538 hypothetical protein; Provisional
Probab=97.97 E-value=2.8e-05 Score=79.19 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
++|+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4899999999999999999999999999998764
No 263
>PRK06847 hypothetical protein; Provisional
Probab=97.96 E-value=0.0001 Score=74.06 Aligned_cols=97 Identities=23% Similarity=0.373 Sum_probs=69.4
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc------------------------------
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------------------------ 273 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l------------------------------ 273 (485)
++|+|||||+.|+-+|..|.+. |.+|+++++.+.+.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~--------------g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~ 70 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRA--------------GIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGF 70 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--------------CCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCC
Confidence 4899999999999999999986 45666665543100
Q ss_pred ----------------------------c---c-ccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeE
Q 011476 274 ----------------------------N---M-FDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGET 319 (485)
Q Consensus 274 ----------------------------~---~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~ 319 (485)
+ . ....+.+.+.+.+++.|+++++++++++++. +.+.+.. .+|++
T Consensus 71 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~-~~g~~ 149 (375)
T PRK06847 71 GFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTF-SDGTT 149 (375)
T ss_pred CccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEE-cCCCE
Confidence 0 0 0134456677777788999999999999864 3454443 56765
Q ss_pred EEEecCeEEEccCCCCCcch
Q 011476 320 SSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 320 ~~i~~D~vi~a~G~~~~p~~ 339 (485)
+.+|.||.|.|. .+.+
T Consensus 150 --~~ad~vI~AdG~--~s~~ 165 (375)
T PRK06847 150 --GRYDLVVGADGL--YSKV 165 (375)
T ss_pred --EEcCEEEECcCC--Ccch
Confidence 899999999994 4444
No 264
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.96 E-value=2.8e-05 Score=74.45 Aligned_cols=106 Identities=14% Similarity=0.247 Sum_probs=82.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~ 135 (485)
.-+++++|||+|..||..+.-..+.|.+||++|-.+..+.. ++ .++...+++.+.+.|+.++ +.++|.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~----------mD-~Eisk~~qr~L~kQgikF~-l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV----------MD-GEISKAFQRVLQKQGIKFK-LGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc----------cC-HHHHHHHHHHHHhcCceeE-eccEEE
Confidence 45789999999999999998888999999999977665532 11 1556668888999998874 788999
Q ss_pred EEecCCC---EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 136 KIDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 136 ~id~~~~---~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
..++... .+.+.+.. +++...+++|.|++++|-+|.+-
T Consensus 277 ~a~~~~dg~v~i~ve~ak-----~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAK-----TGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EeeccCCCceEEEEEecC-----CCceeEEEeeEEEEEccCccccc
Confidence 9887765 34444433 44456899999999999999764
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=7.7e-06 Score=81.95 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC-CCcccCCCccccc---cCccc-------------------------
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR-NYFAFTPLLPSVT---CGTVE------------------------- 108 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~-~~~~~~~~~~~~~---~~~~~------------------------- 108 (485)
.+||+|||||.||+.||...++.|.++.|+.-+ +..+++++-|.+. .|.+-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999999755 3455555544331 11000
Q ss_pred ---------cc------ccccchHHHHhhCCCeEEEEEeEEEEEecCCC----EEEEecCCccCCCCCceEEeecCEEEE
Q 011476 109 ---------AR------SIVEPVRNIVRKKNVDICFWEAECFKIDAENK----KVYCRSSQNTNLNGKEEFCMDYDYLVI 169 (485)
Q Consensus 109 ---------~~------~~~~~~~~~~~~~gv~v~~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~~~~~~yd~lvi 169 (485)
++ .....+++.+.... ++.++++.|.++..++. .|.+.+|. .+.+++|||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~-NL~l~q~~v~dli~e~~~~v~GV~t~~G~----------~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQP-NLHLLQGEVEDLIVEEGQRVVGVVTADGP----------EFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCC-CceehHhhhHHHhhcCCCeEEEEEeCCCC----------eeecCEEEE
Confidence 00 01112333333332 45567888888766333 34555554 999999999
Q ss_pred ccCCCC
Q 011476 170 AMGARA 175 (485)
Q Consensus 170 AtG~~~ 175 (485)
+||+.-
T Consensus 153 TTGTFL 158 (621)
T COG0445 153 TTGTFL 158 (621)
T ss_pred eecccc
Confidence 999753
No 266
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.95 E-value=0.00011 Score=70.92 Aligned_cols=93 Identities=26% Similarity=0.438 Sum_probs=68.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc------------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~------------------------------ 274 (485)
.|+|||||+.|+-+|..|++. |.+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~--------------g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK--------------GLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 689999999999999999885 688999888753210
Q ss_pred -------------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccC
Q 011476 275 -------------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 275 -------------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
.+ ...+.+.+.+.+++.|++++.+++++++. ++.+.+....++. ++.+|.||.|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~a~~vv~a~G 145 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEG--TVTAKIVIGADG 145 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccE--EEEeCEEEECCC
Confidence 01 13455677778888999999999999875 3445444322333 489999999999
Q ss_pred C
Q 011476 333 I 333 (485)
Q Consensus 333 ~ 333 (485)
.
T Consensus 146 ~ 146 (295)
T TIGR02032 146 S 146 (295)
T ss_pred c
Confidence 4
No 267
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.94 E-value=5.9e-05 Score=77.07 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
..||||||+|.||++||..+. .|.+|+|+|+.+..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g 39 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE 39 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence 469999999999999999985 799999999875543
No 268
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.93 E-value=2.6e-05 Score=86.51 Aligned_cols=90 Identities=19% Similarity=0.122 Sum_probs=69.1
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~ 291 (485)
..+|+|+|||+||.|+.+|..|++. |.+||++++.+.+.. .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~--------------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE--------------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 3578999999999999999999986 789999999875432 24666777777889999
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||+|++++.+- ..+++ ++... ..+|.|++|+|.
T Consensus 370 Gv~f~~n~~vG----~dit~---~~l~~--~~yDAV~LAtGA 402 (944)
T PRK12779 370 GGRFVKNFVVG----KTATL---EDLKA--AGFWKIFVGTGA 402 (944)
T ss_pred cCeEEEeEEec----cEEeH---HHhcc--ccCCEEEEeCCC
Confidence 99999987652 12222 22322 569999999995
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.93 E-value=4.7e-05 Score=83.70 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=66.3
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-------c--ccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-------M--FDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-------~--~~~~~~~~~~~~l~~~ 291 (485)
..+|+|+|||||+.|+.+|..|++. |.+|+|+++.+.+.. . ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~--------------G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA--------------GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 4678999999999999999999986 789999998875422 1 3445555556778889
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||+|++++.+ .+. + .+... ..+|.||+|||.
T Consensus 603 GVe~~~gt~V-di~-----l---e~L~~--~gYDaVILATGA 633 (1019)
T PRK09853 603 GVKFEFGCSP-DLT-----V---EQLKN--EGYDYVVVAIGA 633 (1019)
T ss_pred CCEEEeCcee-EEE-----h---hhhee--ccCCEEEECcCC
Confidence 9999999876 221 1 12222 569999999995
No 270
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=5.2e-05 Score=80.15 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...||||||+|.||++||..+++.|.+|+|+|+.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 346999999999999999999999999999998754
No 271
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.92 E-value=2.8e-05 Score=79.86 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=66.8
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA--------------GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 3567999999999999999999986 68999999876542 2 24566667777788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+. ..+.+ .+.. ..+|.||+|+|.
T Consensus 197 gv~~~~~~~v~----~~v~~---~~~~---~~yd~viiAtGa 228 (449)
T TIGR01316 197 GVTFRMNFLVG----KTATL---EELF---SQYDAVFIGTGA 228 (449)
T ss_pred CcEEEeCCccC----CcCCH---HHHH---hhCCEEEEeCCC
Confidence 99999998541 11111 1222 468999999994
No 272
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.92 E-value=2.7e-05 Score=77.49 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=66.3
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc---------ccHHHHHHHHHHHHhCC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAFAEEKFSRDG 292 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~---------~~~~~~~~~~~~l~~~g 292 (485)
.+++|+|||+|+.|+++|..|.+. +.+|+++++.+.+... ++.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL--------------GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 457999999999999999999985 6899999998765321 22233344456667779
Q ss_pred cEEEcCceEEEEeC-----CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTD-----KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~-----~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
++++.++.+..+.. +........+.+...+.+|.||+|+|.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 99999998865532 111110100111112789999999994
No 273
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.91 E-value=2.3e-05 Score=80.81 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=68.1
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||||+.|+.+|..|.+. |.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~--------------g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK--------------GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 4567999999999999999999886 68999999887652 1 13567777778889999
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+.. .+.+ .+.. +.+|.||+|+|.
T Consensus 204 gv~~~~~~~v~~----~v~~---~~~~---~~~d~vvlAtGa 235 (457)
T PRK11749 204 GVEIRTNTEVGR----DITL---DELR---AGYDAVFIGTGA 235 (457)
T ss_pred CCEEEeCCEECC----ccCH---HHHH---hhCCEEEEccCC
Confidence 999999987621 1111 1222 679999999995
No 274
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.91 E-value=2.6e-05 Score=79.22 Aligned_cols=88 Identities=24% Similarity=0.301 Sum_probs=68.5
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhCC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (485)
.+++|+|||+||.|+.+|..|++. |..||++++.+.... .++.++.+...+.|++.|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~--------------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA--------------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC--------------CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 557999999999999999999996 799999999886532 256788888899999999
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
|+|++++++-. .+++..+ .-++|.|++++|.
T Consensus 188 v~~~~~~~vG~----~it~~~L------~~e~Dav~l~~G~ 218 (457)
T COG0493 188 VEFKLNVRVGR----DITLEEL------LKEYDAVFLATGA 218 (457)
T ss_pred eEEEEcceECC----cCCHHHH------HHhhCEEEEeccc
Confidence 99999987631 1111111 1346999999995
No 275
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.89 E-value=6e-05 Score=79.94 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
||||||+|.||++||..+++.|.+|+|+|+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999998754
No 276
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.89 E-value=5.9e-05 Score=78.41 Aligned_cols=35 Identities=34% Similarity=0.331 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
.||+|||+|.||++||..+++.|. |+|+|+.+..+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~ 37 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTE 37 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCC
Confidence 589999999999999999999897 99999885433
No 277
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=4.8e-05 Score=80.67 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~ 94 (485)
..||+|||||.||++||..+++. |.+|+|+|+....+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 35999999999999999999965 58999999875433
No 278
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.87 E-value=9e-05 Score=77.96 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=34.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
...||+|||+|.||++||..+++.|.+|+|+|+.+..+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 35799999999999999999999999999999886543
No 279
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.87 E-value=0.00013 Score=78.02 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..||||||+|.||++||..+++.|.+|+|+|+...
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 57999999999999999999999999999998754
No 280
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=5.6e-05 Score=80.81 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
...||||||+|.||++||..+++.|.+|+|||+.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 3579999999999999999999999999999987643
No 281
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.86 E-value=6.3e-05 Score=77.65 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=66.8
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhCC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~g 292 (485)
.+++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. + .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~--------------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA--------------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 678999999999999999999986 68999999887642 2 245666666778889999
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
|++++++.+.. .+.+ ++.. ..+|.||+|+|.
T Consensus 206 v~~~~~~~v~~----~~~~----~~~~--~~~D~vilAtGa 236 (467)
T TIGR01318 206 IEFHLNCEVGR----DISL----DDLL--EDYDAVFLGVGT 236 (467)
T ss_pred CEEECCCEeCC----ccCH----HHHH--hcCCEEEEEeCC
Confidence 99999987632 1111 1111 469999999995
No 282
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.86 E-value=1e-05 Score=83.34 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=35.4
Q ss_pred CeEEEECCcHHHHHHHHhcCCCC--CcEEEEcCCCCcccC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g--~~V~lie~~~~~~~~ 96 (485)
++|+|||||+|||+||+.|++.| ++|+|+|+++++||.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 47999999999999999999977 899999999999984
No 283
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.86 E-value=5.3e-05 Score=80.72 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHH-HhhCCCeEEEEEeEEEE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNI-VRKKNVDICFWEAECFK 136 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~v~~~~~~v~~ 136 (485)
+++|+|||||+.|+.+|..|...|.+|+||++.+.+.. . .+ .++...+.+. +++.||++ +.+..+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----~-----~d-~eis~~l~~~ll~~~GV~I-~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----L-----LD-ADVAKYFERVFLKSKPVRV-HLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----c-----CC-HHHHHHHHHHHhhcCCcEE-EcCCEEEE
Confidence 57999999999999999999999999999998875321 1 11 1333344443 35678887 46778888
Q ss_pred EecCCC--EEEEe--cCCccCCCC-----CceEEeecCEEEEccCCCCCCCC
Q 011476 137 IDAENK--KVYCR--SSQNTNLNG-----KEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 137 id~~~~--~v~~~--~~~~~~~~~-----~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
++..+. .+.+. +.......+ .+...+.+|.|++|+|.+|+...
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 876542 24432 110000000 01237999999999999998654
No 284
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.85 E-value=0.00048 Score=73.53 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-cEE---EEEcCCCeEEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIF---TKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~-~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (485)
..+...+.+.+++.||+++.++.++++. ++ .+. .....+|+...+.++.||+|||
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 4566777777888999999999999964 23 333 3333567777789999999997
No 285
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.84 E-value=0.0004 Score=72.22 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=34.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
+||+|||+||+|+.+|+.|++.|++|+|||+....++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999987764
No 286
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.84 E-value=9.6e-05 Score=79.29 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..||||||+|.||++||..+++.|.+|+|+|+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46999999999999999999999999999997654
No 287
>PRK12831 putative oxidoreductase; Provisional
Probab=97.83 E-value=6.1e-05 Score=77.68 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=65.8
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------cc--ccHH-HHHHHHHHHHh
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKR-ITAFAEEKFSR 290 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~~--~~~~-~~~~~~~~l~~ 290 (485)
..+++|+|||||+.|+.+|..|++. |.+|+++++.+.+. +. ++.+ +.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM--------------GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 4678999999999999999999996 68999999876431 11 2222 55666678888
Q ss_pred CCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 291 DGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.||++++++.+. ..+.+ .+.. ..+.+|.||+|+|.
T Consensus 204 ~gv~i~~~~~v~----~~v~~---~~~~-~~~~~d~viiAtGa 238 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTI---DELL-EEEGFDAVFIGSGA 238 (464)
T ss_pred cCCEEEcCCEEC----CcCCH---HHHH-hccCCCEEEEeCCC
Confidence 999999998662 11111 1111 12569999999995
No 288
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.82 E-value=0.00085 Score=71.56 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~ 92 (485)
..||||||+|.||++||..+++. |.+|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999987 999999998864
No 289
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=8.8e-05 Score=78.21 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...||||||+|.||++||..+ ..|.+|+|+|+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 346999999999999999999 89999999999753
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.81 E-value=8.4e-05 Score=77.10 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=66.8
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|+.|+.+|..|.+. |.+|+++++.+++. + .++.++.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~--------------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRA--------------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 3567999999999999999999986 68999999887642 2 23556666666788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+..- + . .++ ....+|.|++|+|.
T Consensus 207 Gv~~~~~~~v~~~----~--~--~~~--~~~~~d~VilAtGa 238 (485)
T TIGR01317 207 GIDFVTNTEIGVD----I--S--ADE--LKEQFDAVVLAGGA 238 (485)
T ss_pred CCEEECCCEeCCc----c--C--HHH--HHhhCCEEEEccCC
Confidence 9999999987410 0 0 011 12579999999995
No 291
>PLN02546 glutathione reductase
Probab=97.80 E-value=0.00011 Score=77.14 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
.+++|+|||||+.|+.+|..|...|.+|+|+++.+.+. +. . ..++...+.+.+++.||++. .+..+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~~-----~-d~~~~~~l~~~L~~~GV~i~-~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----RG-----F-DEEVRDFVAEQMSLRGIEFH-TEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----cc-----c-CHHHHHHHHHHHHHCCcEEE-eCCEEEE
Confidence 35799999999999999999999999999999875432 11 1 12444556677888998873 5677777
Q ss_pred EecC-CCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 137 IDAE-NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 137 id~~-~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
+... +..+.+.... + ....+|.||+|+|..|+..
T Consensus 319 i~~~~~g~v~v~~~~------g--~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 319 IIKSADGSLSLKTNK------G--TVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEcCCCEEEEEECC------e--EEEecCEEEEeeccccCCC
Confidence 7642 3334443221 1 1345899999999999765
No 292
>PLN02268 probable polyamine oxidase
Probab=97.80 E-value=1.6e-05 Score=81.59 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=36.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
++|+|||||.+||+||+.|.+.|++|+|+|+++++|+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 479999999999999999999999999999999999853
No 293
>PRK07236 hypothetical protein; Provisional
Probab=97.78 E-value=0.00018 Score=72.51 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=65.0
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc------ccHHHHHHHH------------
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM------FDKRITAFAE------------ 285 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~------------ 285 (485)
.+|+|||||++|+.+|..|++. |.+|+|+++.+..... +.+...+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--------------GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 4899999999999999999986 7899999988643221 2222222221
Q ss_pred -------------------------------HHHHh--CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEc
Q 011476 286 -------------------------------EKFSR--DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWS 330 (485)
Q Consensus 286 -------------------------------~~l~~--~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a 330 (485)
+.|.+ .++++++++++++++. +++++.. .+|++ +.+|+||.|
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vIgA 149 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARF-ADGRR--ETADLLVGA 149 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEEC
Confidence 11111 1367899999999864 3455544 56765 899999999
Q ss_pred cCC
Q 011476 331 TGI 333 (485)
Q Consensus 331 ~G~ 333 (485)
-|.
T Consensus 150 DG~ 152 (386)
T PRK07236 150 DGG 152 (386)
T ss_pred CCC
Confidence 994
No 294
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.78 E-value=0.00051 Score=72.98 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC---CcEEEE---EcCCCeEEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD---KEIFTK---VRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~~---~~v~~~---~~~~G~~~~i~~D~vi~a~G 332 (485)
..+...+.+.+++.||+++.++.++++.. +.+..+ ...+|+...+.+..||+|||
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 45666677777788999999999999742 334333 33467766788999999998
No 295
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.78 E-value=8e-05 Score=73.90 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhC-CcEEEcCceEEEEeC--Cc---EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCC---
Q 011476 279 RITAFAEEKFSRD-GIDVKLGSMVVKVTD--KE---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT--- 349 (485)
Q Consensus 279 ~~~~~~~~~l~~~-gV~v~~~~~v~~v~~--~~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~--- 349 (485)
.+.+.+.+.+.+. |+++++++.|++++. ++ +.+....+|+..++.+++|++..|- . .+ .|+++.|+.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG--~-aL-~LLqksgi~e~~ 257 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG--G-AL-PLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch--H-hH-HHHHHcCChhhc
Confidence 4556666667666 999999999999974 22 5555556677778999999999993 2 23 678899882
Q ss_pred CCCceeeC-CCccccC-------CCCeEEeccccC
Q 011476 350 NRRALATD-EWLRVEG-------SDSIYALGDCAT 376 (485)
Q Consensus 350 ~~g~i~vd-~~l~t~~-------~~~Vya~GD~~~ 376 (485)
.-|++.|- .+|++.+ ..-||..-.+-.
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGa 292 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGA 292 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCCCC
Confidence 23456665 4667622 234776655533
No 296
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.77 E-value=8.1e-05 Score=81.59 Aligned_cols=90 Identities=23% Similarity=0.354 Sum_probs=66.8
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||||+.|+.+|..|++. |.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR--------------GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999986 78999999865432 1 23556666666788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||+|++++.+. ..+.+ ++.. ...+|.||+|+|.
T Consensus 495 gv~~~~~~~v~----~~v~~---~~l~--~~~ydavvlAtGa 527 (752)
T PRK12778 495 GVKFETDVIVG----KTITI---EELE--EEGFKGIFIASGA 527 (752)
T ss_pred CCEEECCCEEC----CcCCH---HHHh--hcCCCEEEEeCCC
Confidence 99999987652 12221 1222 2569999999995
No 297
>PRK07208 hypothetical protein; Provisional
Probab=97.76 E-value=2e-05 Score=81.87 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=37.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
..++|+|||||++||+||+.|.+.|++|+|+|+++.+|+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 4578999999999999999999999999999999999985
No 298
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.75 E-value=0.00076 Score=71.67 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC---CcEEEEcCCCCccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPS---YDVQVISPRNYFAF 95 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g---~~V~lie~~~~~~~ 95 (485)
..||+|||+|.||++||..+++.| .+|+|+|+....+.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 469999999999999999999887 89999998865443
No 299
>PLN02576 protoporphyrinogen oxidase
Probab=97.75 E-value=2.2e-05 Score=82.01 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCC-CCcEEEEcCCCCcccC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFT 96 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~-g~~V~lie~~~~~~~~ 96 (485)
...++|+|||||++||+||++|.+. |++|+|+|+++.+||.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 3456899999999999999999988 9999999999999985
No 300
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.75 E-value=0.00055 Score=70.12 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEeC-Cc---EEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhC
Q 011476 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTD-KE---IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG 347 (485)
Q Consensus 277 ~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~-~~---v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g 347 (485)
|..+.-.......+.|-+++..++|+++.. ++ +.+....+|++.++.++.||-|+| |+..++++..+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG----pW~d~i~~~~~ 233 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG----PWVDEILEMAG 233 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCC----ccHHHHHHhhc
Confidence 446667777888899999999999999864 32 555555668888899999999999 77777766664
No 301
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.73 E-value=5.4e-05 Score=84.82 Aligned_cols=90 Identities=20% Similarity=0.341 Sum_probs=67.3
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhCC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (485)
.+++|+|||||+.|+.+|..|++. |.+|+|+++.+.+.. .++.++.....+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~--------------G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY--------------GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--------------CCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999996 689999998875522 135677777788899999
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
|++++++.+ +..+.+..+.+ ...+|.||+|||.
T Consensus 495 v~~~~~~~v----g~~~~~~~l~~----~~~yDaViIATGa 527 (1006)
T PRK12775 495 VKIETNKVI----GKTFTVPQLMN----DKGFDAVFLGVGA 527 (1006)
T ss_pred CEEEeCCcc----CCccCHHHHhh----ccCCCEEEEecCC
Confidence 999999754 11122111100 1458999999995
No 302
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=0.00021 Score=76.11 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
...||||||+|.||++||..+++.|.+|+|+|+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35799999999999999999999999999999874
No 303
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.72 E-value=2.5e-05 Score=75.92 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCeEEEECCcHHHHHHHHhcC--------------CCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLN--------------NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKK 123 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~--------------~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (485)
.-++|||||||.|+.+|-.|+ ....+||++|+.+...- .+ ...+.++..+++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-----mF------dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-----MF------DKRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----HH------HHHHHHHHHHHhhhc
Confidence 358999999999999999986 34567999998864321 11 125666778888899
Q ss_pred CCeEEEEEeEEEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCC
Q 011476 124 NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (485)
Q Consensus 124 gv~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~ 176 (485)
+|+++ ..+.|..+.. +.+.++.+ +++..+++|--||.|||..|+
T Consensus 287 ~I~~~-~~t~Vk~V~~--~~I~~~~~------~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 287 GIDLD-TGTMVKKVTE--KTIHAKTK------DGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred cceee-cccEEEeecC--cEEEEEcC------CCceeeecceEEEecCCCCCc
Confidence 98874 5667877765 44555443 223459999999999998765
No 304
>PLN02815 L-aspartate oxidase
Probab=97.72 E-value=0.00021 Score=75.60 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
...||||||+|.|||+||..+++.| +|+|+|+.+..++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 3579999999999999999999999 9999998765443
No 305
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.71 E-value=7.7e-05 Score=76.61 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=63.6
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc----------ccHHHHHHHHHHHHhC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------FDKRITAFAEEKFSRD 291 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~l~~~ 291 (485)
.+++|+|||+||.|+.+|..|++.. .|.+|+|+++.+.+... ....+...+.+.++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4579999999999999999998631 37899999999876421 1123344566677888
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+|+++.+..+- ..+.+. +-. ..+|.||+|+|.
T Consensus 93 ~v~~~~nv~vg----~dvtl~---~L~---~~yDaVIlAtGa 124 (491)
T PLN02852 93 RVSFFGNVTLG----RDVSLS---ELR---DLYHVVVLAYGA 124 (491)
T ss_pred CeEEEcCEEEC----ccccHH---HHh---hhCCEEEEecCC
Confidence 99999887652 122221 111 468999999995
No 306
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.71 E-value=2.6e-05 Score=80.67 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=36.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC----CCcEEEEcCCCCcccC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP----SYDVQVISPRNYFAFT 96 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~----g~~V~lie~~~~~~~~ 96 (485)
+++|+|||||++||+||+.|.+. |++|+|+|+++.+||.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 46999999999999999999987 9999999999999885
No 307
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.0018 Score=61.42 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhcC----CCCCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~----~~g~~V~lie~~~~~~ 94 (485)
..+|||||||-.|.+.|+.|. +.|++|+|+|+.+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 569999999999999999997 5679999999986544
No 308
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.71 E-value=0.00012 Score=78.75 Aligned_cols=88 Identities=24% Similarity=0.387 Sum_probs=67.2
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhCC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRDG 292 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~g 292 (485)
.+++|+|||+|+.|+.+|..|++. |.+|+++++.+.+.. .++..+.....+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA--------------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc--------------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999986 689999999886431 246666666678889999
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
|++++++.+.. .+.+ .+ . ...+|.|++|+|.
T Consensus 375 v~~~~~~~v~~----~~~~---~~-l--~~~~DaV~latGa 405 (639)
T PRK12809 375 IDFHLNCEIGR----DITF---SD-L--TSEYDAVFIGVGT 405 (639)
T ss_pred eEEEcCCccCC----cCCH---HH-H--HhcCCEEEEeCCC
Confidence 99999987631 1111 11 1 1468999999995
No 309
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.68 E-value=0.0003 Score=74.79 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
...||||||+|.||++||..+++.|.+|+|||+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 35799999999999999999999999999999864
No 310
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.65 E-value=0.00018 Score=72.20 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=64.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccccc--HH-----------------HHHHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD--KR-----------------ITAFAE 285 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~--~~-----------------~~~~~~ 285 (485)
+|+|||||..|+|+|..|++. |.+|+|+++++..+.... .. ....+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--------------G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~ 67 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--------------GVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLK 67 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHH
Confidence 799999999999999999986 799999998776432110 00 112345
Q ss_pred HHHHhCCcEEEcCceEEEEeCCcEEEEE-------------------cCCCeEEEEe-cCeEEEccCCCCCcchHHHHHH
Q 011476 286 EKFSRDGIDVKLGSMVVKVTDKEIFTKV-------------------RGNGETSSMP-YGMVVWSTGIAPHAIIKDFMKQ 345 (485)
Q Consensus 286 ~~l~~~gV~v~~~~~v~~v~~~~v~~~~-------------------~~~G~~~~i~-~D~vi~a~G~~~~p~~~~l~~~ 345 (485)
+.++..|..+...+....+...+..... ..+++...++ +|.||+||| +.++. .|.+.
T Consensus 68 ~ei~~lg~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG--~~~s~-~La~~ 144 (433)
T TIGR00137 68 TEMRQLSSLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATG--PLTSP-ALSED 144 (433)
T ss_pred HHHhhcCeeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCC--CCccH-HHHHH
Confidence 6677777655555555554333221110 0123333344 679999999 45544 45444
Q ss_pred h
Q 011476 346 V 346 (485)
Q Consensus 346 ~ 346 (485)
+
T Consensus 145 L 145 (433)
T TIGR00137 145 L 145 (433)
T ss_pred H
Confidence 3
No 311
>PRK08275 putative oxidoreductase; Provisional
Probab=97.65 E-value=0.00019 Score=75.76 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~ 92 (485)
...||||||+|.||++||..+++. |.+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 357999999999999999999865 789999998864
No 312
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.65 E-value=0.00017 Score=77.85 Aligned_cols=89 Identities=29% Similarity=0.349 Sum_probs=66.1
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|+.|+.+|..|.+. |.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~--------------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN--------------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 3678999999999999999999986 68999999887642 1 23556666667788889
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+.. .+.+. + . ...+|.|++|+|.
T Consensus 391 Gv~~~~~~~v~~----~i~~~---~-~--~~~~DavilAtGa 422 (654)
T PRK12769 391 GIEFELNCEVGK----DISLE---S-L--LEDYDAVFVGVGT 422 (654)
T ss_pred CeEEECCCEeCC----cCCHH---H-H--HhcCCEEEEeCCC
Confidence 999999987621 11111 1 1 1359999999995
No 313
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.64 E-value=8.9e-05 Score=76.09 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=25.6
Q ss_pred eEEEECCcHHHHHHHHhcCCCC---CcEEEEcCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPS---YDVQVISPR 90 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g---~~V~lie~~ 90 (485)
||||||||+||..+|..|++.+ .+|+|||+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999999999999999665 899999976
No 314
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.64 E-value=0.0002 Score=74.12 Aligned_cols=89 Identities=27% Similarity=0.360 Sum_probs=66.0
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|+.|+.+|..|.+. |.+|+++++.+.+.. .++.++.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA--------------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 3567999999999999999999986 689999998876522 13455556666788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+.. + +.. +.. ...+|.||+|+|.
T Consensus 207 gv~~~~~~~v~~-~---~~~----~~~--~~~~d~vvlAtGa 238 (471)
T PRK12810 207 GIEFRTNVEVGK-D---ITA----EEL--LAEYDAVFLGTGA 238 (471)
T ss_pred CcEEEeCCEECC-c---CCH----HHH--HhhCCEEEEecCC
Confidence 999999987632 0 000 111 1569999999995
No 315
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.64 E-value=0.00031 Score=75.20 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC-CCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~-~g~~V~lie~~~ 91 (485)
...+|+||||||+||++|..|++ .|++|+|||+.+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 36799999999999999999999 599999999775
No 316
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.63 E-value=0.00048 Score=72.80 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=65.8
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc------------cc----ccHHHHHHHHHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------NM----FDKRITAFAEEKF 288 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l------------~~----~~~~~~~~~~~~l 288 (485)
.|+|||||+.|+.+|..+++. +.+|+|+++.. +. +. ...++.+.+.+.+
T Consensus 6 DVvIIGgGpAGL~AA~~lar~--------------g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA--------------KLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC--------------CCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 799999999999999999986 68999998754 21 11 1235667777788
Q ss_pred HhCCcEEEcCceEEEEeCCc-EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 289 SRDGIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
++.|++++ ++.|++++.++ ...+...+|+ +.+|.||+|+|.
T Consensus 71 ~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g~---~~a~~lVlATGa 112 (555)
T TIGR03143 71 QDFGVKFL-QAEVLDVDFDGDIKTIKTARGD---YKTLAVLIATGA 112 (555)
T ss_pred HHcCCEEe-ccEEEEEEecCCEEEEEecCCE---EEEeEEEECCCC
Confidence 88899986 66788886432 2222223443 789999999994
No 317
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.63 E-value=0.00016 Score=73.35 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=59.3
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-------cc---HHHHHHHHHHHHhC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD---KRITAFAEEKFSRD 291 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-------~~---~~~~~~~~~~l~~~ 291 (485)
.+++|+|||+||.|+.+|..|... .+.+|+|+++.+.+... .. ..+...+.+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 346999999999999999987653 27899999999876431 11 23444555556678
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+++++.+..+-. .+.... -. -.+|.||+|+|.
T Consensus 105 ~v~f~gnv~VG~----Dvt~ee----L~--~~YDAVIlAtGA 136 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEE----LR--NHYNCVIFCCGA 136 (506)
T ss_pred CeEEEeeeEecC----ccCHHH----HH--hcCCEEEEEcCC
Confidence 888875544321 111111 11 358999999994
No 318
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.63 E-value=0.00028 Score=74.77 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~ 94 (485)
..||+|||+|.||++||..+++. |.+|+|+|+....+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~ 41 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR 41 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 36999999999999999999865 68999999875533
No 319
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.63 E-value=0.00033 Score=73.19 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
..||||||+|.||++||..++. |.+|+|+|+.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4699999999999999999976 899999998865433
No 320
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.62 E-value=0.00025 Score=75.46 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=29.6
Q ss_pred EEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 61 VVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 61 vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
|||||+|.||++||..+++.|.+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6999999999999999999999999999886
No 321
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.62 E-value=4e-05 Score=79.28 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=35.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC------CCcEEEEcCCCCcccC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP------SYDVQVISPRNYFAFT 96 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~------g~~V~lie~~~~~~~~ 96 (485)
+++|+|||||++||+||+.|.+. +++|+|+|+++++||.
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 35899999999999999999864 4899999999999985
No 322
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.62 E-value=0.00017 Score=79.67 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=63.5
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||||+.|+.+|..|++. |.+|+|+++.+.+.. .++.+......+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~--------------G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA--------------GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999986 789999998875422 13444555555777888
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++... +.+ .+.+. ..+|.||+|+|.
T Consensus 601 GVe~~~g~~~d------~~v---e~l~~--~gYDaVIIATGA 631 (1012)
T TIGR03315 601 GVEFKYGCSPD------LTV---AELKN--QGYKYVILAIGA 631 (1012)
T ss_pred CcEEEEecccc------eEh---hhhhc--ccccEEEECCCC
Confidence 99999874311 111 11222 568999999995
No 323
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.61 E-value=4.3e-05 Score=79.74 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=36.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
+||||||||++||+||..|++.|++|+|+|+++..|+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999999998854
No 324
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=0.00031 Score=74.62 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..||+|||+|.||++||+.++.. .+|+|+|+...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 46999999999999999999866 89999998743
No 325
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.59 E-value=0.00033 Score=74.37 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~~~ 94 (485)
..||||||+|.||++||..++.. |.+|+|+|+....+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 46999999999999999999865 57999999875433
No 326
>PLN02529 lysine-specific histone demethylase 1
Probab=97.58 E-value=6.1e-05 Score=80.79 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 53 EMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 53 ~~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
++....++|+|||||++|++||+.|+..|++|+|+|+++..|+.
T Consensus 155 ~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 155 PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 33456789999999999999999999999999999999998885
No 327
>PLN02661 Putative thiazole synthesis
Probab=97.58 E-value=0.0026 Score=62.05 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=62.1
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------------------------ccc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------------MFD 277 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------------------------~~~ 277 (485)
.|+|||+|+.|+-+|..+++. ++.+|+++++...+.. .++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 899999999999999999863 3678999988654311 011
Q ss_pred H-----------HHHHHHH-HHHHhCCcEEEcCceEEEEe--CCcEEEEEc-------C--CC---eEEEEecCeEEEcc
Q 011476 278 K-----------RITAFAE-EKFSRDGIDVKLGSMVVKVT--DKEIFTKVR-------G--NG---ETSSMPYGMVVWST 331 (485)
Q Consensus 278 ~-----------~~~~~~~-~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~-------~--~G---~~~~i~~D~vi~a~ 331 (485)
. ++...+. +.+++.||+++.++.+.++. ++.+..+.. . ++ +...+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 0 1111233 33445799999999998875 233222210 1 11 22358999999999
Q ss_pred CC
Q 011476 332 GI 333 (485)
Q Consensus 332 G~ 333 (485)
|.
T Consensus 241 Gh 242 (357)
T PLN02661 241 GH 242 (357)
T ss_pred CC
Confidence 94
No 328
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.57 E-value=0.00034 Score=72.78 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=60.8
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceE
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (485)
.+++++|||+|.+|+++|..|.+. |.+|+++++.+. .....+.+.+++.||+++++..+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~--------------G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL--------------GARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCc
Confidence 456999999999999999999876 789999987653 23345567788899999887654
Q ss_pred EEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchH
Q 011476 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340 (485)
Q Consensus 302 ~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~ 340 (485)
. . ..++|+||+++|+ .|+..
T Consensus 74 ~----------~-------~~~~D~Vv~s~Gi--~~~~~ 93 (480)
T PRK01438 74 T----------L-------PEDTDLVVTSPGW--RPDAP 93 (480)
T ss_pred c----------c-------cCCCCEEEECCCc--CCCCH
Confidence 2 0 1568999999995 56663
No 329
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.57 E-value=5.3e-05 Score=82.98 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCC--CCcEEEEcCCCC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~--g~~V~lie~~~~ 92 (485)
.+|+||||||||+++|..|++. |++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3899999999999999999976 899999998875
No 330
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.57 E-value=6e-05 Score=74.89 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=35.5
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
.||+|||||++|+++|..|++.|.+|+|+|+++..|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 58999999999999999999999999999999888874
No 331
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.56 E-value=0.0013 Score=67.35 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
...+.+.+++.|++++.+++|+++. ++.+..+. .+|.+ +.+|.||.|+|.
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~--i~A~~VI~A~G~ 162 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDV--IEAKTVILADGV 162 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcE--EECCEEEEEeCC
Confidence 3456677778899999999999975 33444444 34554 899999999994
No 332
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.55 E-value=0.0024 Score=59.94 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=35.8
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcC--CCCCcEEEEcCCCCccc
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAF 95 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~--~~g~~V~lie~~~~~~~ 95 (485)
..+..+|+||||||..|++.|+.|. ..+.+|.|+|++..+.-
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 3456799999999999999999887 56999999999876553
No 333
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.0023 Score=57.18 Aligned_cols=134 Identities=21% Similarity=0.230 Sum_probs=82.3
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-------cc--------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD-------------------- 277 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-------~~-------------------- 277 (485)
.|+|||+||+|+-+|..|++. |.+|.+++++-.+... |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~--------------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKA--------------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhC--------------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 799999999999999999995 7999999987654321 11
Q ss_pred -----------HHHHHHHHHHHHhCCcEEEcCceEEEEe--CC-cEEEEEc------CCCe---EEEEecCeEEEccCCC
Q 011476 278 -----------KRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIFTKVR------GNGE---TSSMPYGMVVWSTGIA 334 (485)
Q Consensus 278 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~-~v~~~~~------~~G~---~~~i~~D~vi~a~G~~ 334 (485)
.++...+....-+.|+++...+.|..+- ++ ++..+.. ..+. ...+.++.||-|||.
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH- 176 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH- 176 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC-
Confidence 1122233344456789999988888873 33 3332221 1121 124889999999994
Q ss_pred CCcchHHH-HHHhC---CCC--C-------C-ceeeCCCccccCCCCeEEeccccC
Q 011476 335 PHAIIKDF-MKQVG---QTN--R-------R-ALATDEWLRVEGSDSIYALGDCAT 376 (485)
Q Consensus 335 ~~p~~~~l-~~~~g---~~~--~-------g-~i~vd~~l~t~~~~~Vya~GD~~~ 376 (485)
...+-.+ .++.. ++- . + .+.|+.+.+ -.||+|++|=.+.
T Consensus 177 -da~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~~ 229 (262)
T COG1635 177 -DAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAVN 229 (262)
T ss_pred -chHHHHHHHHhccccccccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhHH
Confidence 4333333 44442 211 1 1 133333333 3799999997543
No 334
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.54 E-value=0.00077 Score=66.74 Aligned_cols=92 Identities=24% Similarity=0.375 Sum_probs=62.6
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEe-cCccccc-----------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLE-AADHILN----------------------------- 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~-~~~~~l~----------------------------- 274 (485)
.|+|||||..|+|.|..+++. |.+|.|+. ..+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--------------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--------------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 489999999999999999997 67888882 2221110
Q ss_pred ------------------------ccc-HHHHHHHHHHHHh-CCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCe
Q 011476 275 ------------------------MFD-KRITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 275 ------------------------~~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~ 326 (485)
..| ......+.+.+++ .+++++ ...|+++. ++.+..+.+.+|+. +.+|.
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~--~~a~~ 143 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEE--IEADA 143 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEE--EEECE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCE--EecCE
Confidence 011 1234455666666 589986 56788884 46677777788886 99999
Q ss_pred EEEccCC
Q 011476 327 VVWSTGI 333 (485)
Q Consensus 327 vi~a~G~ 333 (485)
||+|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999994
No 335
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.54 E-value=0.00024 Score=76.46 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|+.|+.+|..|.+. |.+|+++++.+.+. + .++.++.....+.+++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK--------------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 3568999999999999999999986 68999999887642 2 23556666667788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||++++++.+. + .+.+ .+.. ..+|.||+|+|.
T Consensus 257 Gv~i~~~~~v~-~---dv~~---~~~~---~~~DaVilAtGa 288 (652)
T PRK12814 257 GAEFRFNTVFG-R---DITL---EELQ---KEFDAVLLAVGA 288 (652)
T ss_pred CCEEEeCCccc-C---ccCH---HHHH---hhcCEEEEEcCC
Confidence 99999988642 1 1111 1111 358999999995
No 336
>PRK08244 hypothetical protein; Provisional
Probab=97.54 E-value=0.001 Score=69.34 Aligned_cols=94 Identities=26% Similarity=0.405 Sum_probs=64.7
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc------------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~------------------------------ 274 (485)
.|+|||||++|+-+|..|++. |.+|+|+++.+...+
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~--------------G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~ 69 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALA--------------GVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRK 69 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhccc
Confidence 799999999999999999986 456666654432100
Q ss_pred --------------------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEc-CCCeEEEEec
Q 011476 275 --------------------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPY 324 (485)
Q Consensus 275 --------------------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~-~~G~~~~i~~ 324 (485)
.+ ...+.+.+.+.+++.|++++.++++++++. +++.+... .+|+ .++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a 148 (493)
T PRK08244 70 LPSGHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTS 148 (493)
T ss_pred ccceEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEe
Confidence 00 013345556667778999999999999863 44544321 2452 35899
Q ss_pred CeEEEccCC
Q 011476 325 GMVVWSTGI 333 (485)
Q Consensus 325 D~vi~a~G~ 333 (485)
|.||.|.|.
T Consensus 149 ~~vVgADG~ 157 (493)
T PRK08244 149 SYVVGADGA 157 (493)
T ss_pred CEEEECCCC
Confidence 999999994
No 337
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.54 E-value=0.00034 Score=72.76 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=59.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
..++|+|||+|.+|+++|..|+..|++|+++|+.+. .....+.+.+++.|+.+. ....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~------------------~~~~~~~~~l~~~gv~~~-~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD------------------ERHRALAAILEALGATVR-LGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------------------hhhHHHHHHHHHcCCEEE-ECCCcc-
Confidence 356999999999999999999999999999997642 111223455677787652 222111
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCCCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGV 183 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~G~ 183 (485)
. ...+|.||+++|..|+.|-+...
T Consensus 75 ---------~--------------~~~~D~Vv~s~Gi~~~~~~~~~a 98 (480)
T PRK01438 75 ---------L--------------PEDTDLVVTSPGWRPDAPLLAAA 98 (480)
T ss_pred ---------c--------------cCCCCEEEECCCcCCCCHHHHHH
Confidence 0 34589999999999887754443
No 338
>PLN02463 lycopene beta cyclase
Probab=97.51 E-value=0.001 Score=67.94 Aligned_cols=92 Identities=20% Similarity=0.391 Sum_probs=64.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-c-c---------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-N-M--------------------------- 275 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-~-~--------------------------- 275 (485)
.|+|||||+.|+-+|..|++. |.+|.++++.+... + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~--------------Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEA--------------GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHC--------------CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 899999999999999999875 67888887654211 0 0
Q ss_pred ---------------c-cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 276 ---------------F-DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 276 ---------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
+ ...+.+.+.+.+.+.||+++ ..+|++++. ++..+. .++|.+ +.+|.||.|+|..
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~-~~dG~~--i~A~lVI~AdG~~ 168 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVV-CDDGVK--IQASLVLDATGFS 168 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEE-ECCCCE--EEcCEEEECcCCC
Confidence 0 11233455566677899997 568888864 234343 356754 9999999999953
No 339
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0011 Score=63.93 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=66.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCce-EEEEecCcc-----------cccc-----ccHHHHHHHHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADH-----------ILNM-----FDKRITAFAEEK 287 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~-Vtlv~~~~~-----------~l~~-----~~~~~~~~~~~~ 287 (485)
.|+||||||.|+-+|..+.+. +.+ +.+++.... -.|. ..+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~--------------~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARA--------------GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHc--------------CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 799999999999999999997 456 444443211 0122 345677777777
Q ss_pred HHhCCcEEEcCceEEEEeCCc-EEEEEcCCCeEEEEecCeEEEccCCCCC
Q 011476 288 FSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (485)
Q Consensus 288 l~~~gV~v~~~~~v~~v~~~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~ 336 (485)
.+..|+++.. ..|.+++... .-.+.+++|+ +.|+.||+|+|...+
T Consensus 71 a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEE-EEEEEEeecCceEEEEECCCe---EEEeEEEECcCCccc
Confidence 8888999988 7788887654 3333334555 899999999996433
No 340
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00041 Score=74.71 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=69.4
Q ss_pred HhhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHh
Q 011476 220 RKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSR 290 (485)
Q Consensus 220 ~~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~ 290 (485)
.+.|++|.|||+||.|+-+|.+|.+. |..|++++|.++... .+|..+.+.=.+.|.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~--------------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKA--------------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQ 1847 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhc--------------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHh
Confidence 36899999999999999999999997 789999999998632 2566677777788999
Q ss_pred CCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 291 DGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+||+|++|+.+-+- +.+ |+-. -+.|.||+|+|.
T Consensus 1848 egi~f~tn~eigk~----vs~----d~l~--~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIGKH----VSL----DELK--KENDAIVLATGS 1880 (2142)
T ss_pred hCceEEeecccccc----ccH----HHHh--hccCeEEEEeCC
Confidence 99999999876321 111 2222 357888999984
No 341
>PRK06184 hypothetical protein; Provisional
Probab=97.47 E-value=0.0015 Score=68.36 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEE--cCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~--~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+.+.|+++++++++++++. +.+++.. ..+++ ++.+|.||-|.|.
T Consensus 112 e~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~--~i~a~~vVgADG~ 166 (502)
T PRK06184 112 ERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEE--TVRARYLVGADGG 166 (502)
T ss_pred HHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE--EEEeCEEEECCCC
Confidence 44566777788999999999999964 3444432 12333 4999999999994
No 342
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.46 E-value=9.5e-05 Score=73.80 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
.++|+|||||++|+.+|+.|++.|++|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46999999999999999999999999999997764
No 343
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.45 E-value=9.5e-05 Score=77.12 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
..+.+.+.+.+++.|++|++++.|++|. ++++..+.+.+|++ +.+|.||+++|
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~--~~ad~vV~a~~ 283 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEK--IYAKRIVSNAT 283 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCE--EEcCEEEECCC
Confidence 4677888899999999999999999985 34455555566765 89999999998
No 344
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.44 E-value=0.00053 Score=71.67 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...||+|||+|.||++||..++ +.+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3579999999999999999997 569999998865
No 345
>PLN02487 zeta-carotene desaturase
Probab=97.43 E-value=0.00015 Score=76.08 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
.+++|+|||||++|+++|+.|.+.|++|+|+|+.+..++.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCc
Confidence 3469999999999999999999999999999999988864
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.43 E-value=0.00013 Score=78.89 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=39.0
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 54 ~~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
+...+++|+|||||++|++||++|...|++|+|+|+++.+|+.
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3345789999999999999999999999999999999998875
No 347
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.42 E-value=0.0016 Score=65.94 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=34.8
Q ss_pred HHHHHHHhC-CcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 283 FAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 283 ~~~~~l~~~-gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+. +|++++++.+++++. +++.+.. .+|+. +.+|.||.|.|.
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vV~AdG~ 164 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFD-QQGNR--WTGDALIGCDGV 164 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEE-cCCCE--EecCEEEECCCc
Confidence 344444455 599999999999964 3455544 56664 899999999994
No 348
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.41 E-value=0.0022 Score=64.76 Aligned_cols=55 Identities=9% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
+.+.+.+.+++.|++++.++++++++. +.+.+.. .+|+. +.+|.||.|.|. ...+
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vV~AdG~--~S~v 171 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRL-DDGRR--LEAALAIAADGA--ASTL 171 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEE-CCCCE--EEeCEEEEecCC--CchH
Confidence 345556667788999999999999864 3455443 55664 899999999994 4444
No 349
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00017 Score=71.34 Aligned_cols=42 Identities=29% Similarity=0.467 Sum_probs=38.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
....+|+|||+|.+||++|+.|.+.||+|+|+|.++++|+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 446799999999999999999999999999999999999864
No 350
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.40 E-value=0.0015 Score=73.57 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=67.0
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccc-----------cHHHHHHHHHHHHhC
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-----------DKRITAFAEEKFSRD 291 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~-----------~~~~~~~~~~~l~~~ 291 (485)
..+|+|||||+.|+..|..+.+. |.+|+|++..+.+...+ ..+....+.+.++..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~--------------G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA--------------GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 46899999999999999999985 78999999876543211 123334455566655
Q ss_pred -CcEEEcCceEEEEeCCc-EEEEE-cC-------C----CeEEEEecCeEEEccCC
Q 011476 292 -GIDVKLGSMVVKVTDKE-IFTKV-RG-------N----GETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 -gV~v~~~~~v~~v~~~~-v~~~~-~~-------~----G~~~~i~~D~vi~a~G~ 333 (485)
+|+++.+++|..+..+. +.... .. + +...++.+|.||+|||.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa 284 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA 284 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC
Confidence 59999999999886543 21111 00 1 11125889999999994
No 351
>PLN02568 polyamine oxidase
Probab=97.39 E-value=0.00015 Score=75.96 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=35.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC-----CcEEEEcCCCCcccC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPS-----YDVQVISPRNYFAFT 96 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g-----~~V~lie~~~~~~~~ 96 (485)
.++|+|||||++||+||++|.+.| ++|+|+|+++.+|+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 468999999999999999999766 899999999999885
No 352
>PRK06834 hypothetical protein; Provisional
Probab=97.38 E-value=0.002 Score=66.99 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=64.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc---c---cc----------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL---N---MF---------------------- 276 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l---~---~~---------------------- 276 (485)
.|+|||||++|+-+|..|.+. |.+|+++++.+... + .+
T Consensus 5 dVlIVGaGp~Gl~lA~~La~~--------------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~ 70 (488)
T PRK06834 5 AVVIAGGGPTGLMLAGELALA--------------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQ 70 (488)
T ss_pred eEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCC
Confidence 799999999999999999986 45666665443210 0 00
Q ss_pred ----------------------------cHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCe
Q 011476 277 ----------------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 277 ----------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (485)
...+.+.+.+.+++.||+++.++++++++. +++.+.. .+|++ +.+|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~-~~g~~--i~a~~ 147 (488)
T PRK06834 71 VAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVEL-SDGRT--LRAQY 147 (488)
T ss_pred ccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCE
Confidence 022334455666778999999999999864 4455544 45654 89999
Q ss_pred EEEccCC
Q 011476 327 VVWSTGI 333 (485)
Q Consensus 327 vi~a~G~ 333 (485)
||.|.|.
T Consensus 148 vVgADG~ 154 (488)
T PRK06834 148 LVGCDGG 154 (488)
T ss_pred EEEecCC
Confidence 9999994
No 353
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.37 E-value=0.007 Score=54.41 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=62.4
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc-------cc--------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD-------------------- 277 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~-------~~-------------------- 277 (485)
.|+|||+|++|+-+|..|++. |.+|.++++...+... |+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~--------------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKA--------------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHH--------------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHC--------------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 899999999999999999996 6899999887643210 00
Q ss_pred -----------HHHHHHHHHHHHhCCcEEEcCceEEEE--eC-CcEEEEEc------CCC---eEEEEecCeEEEccCCC
Q 011476 278 -----------KRITAFAEEKFSRDGIDVKLGSMVVKV--TD-KEIFTKVR------GNG---ETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 278 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~v--~~-~~v~~~~~------~~G---~~~~i~~D~vi~a~G~~ 334 (485)
.++...+....-+.|+++...+.|..+ .+ +++..+.. ..| ....+.+..||-|||.
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH- 163 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH- 163 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S-
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC-
Confidence 112233334444589999999999887 23 44433321 112 1235899999999995
Q ss_pred CCcchHHHHHHh
Q 011476 335 PHAIIKDFMKQV 346 (485)
Q Consensus 335 ~~p~~~~l~~~~ 346 (485)
..+....+.++.
T Consensus 164 da~v~~~~~kk~ 175 (230)
T PF01946_consen 164 DAEVVRVLAKKL 175 (230)
T ss_dssp SSSSTSHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 233333334444
No 354
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.37 E-value=0.0043 Score=57.66 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=34.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCC------CcEEEEcCCCCccc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPS------YDVQVISPRNYFAF 95 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g------~~V~lie~~~~~~~ 95 (485)
.+.++|+|+|||..|+.+|++|+..+ ++|+|||+..-.++
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 44689999999999999999999665 78999998866554
No 355
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.36 E-value=0.0026 Score=64.35 Aligned_cols=95 Identities=18% Similarity=0.321 Sum_probs=65.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc------------------c-------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI------------------L------------- 273 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~------------------l------------- 273 (485)
+|+|||||+.|+-+|..|++. |.+|+|+++.+.. +
T Consensus 4 dV~IvGaGpaGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~ 69 (392)
T PRK08243 4 QVAIIGAGPAGLLLGQLLHLA--------------GIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREG 69 (392)
T ss_pred eEEEECCCHHHHHHHHHHHhc--------------CCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcC
Confidence 799999999999999999986 4566666655420 0
Q ss_pred -----------------c-----------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEeC---CcEEEEEcCCCeEEE
Q 011476 274 -----------------N-----------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVRGNGETSS 321 (485)
Q Consensus 274 -----------------~-----------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~---~~v~~~~~~~G~~~~ 321 (485)
+ .+ ...+.+.+.+...+.|+++++++++++++. +.+.+....+|+..+
T Consensus 70 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~ 149 (392)
T PRK08243 70 LVHDGIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR 149 (392)
T ss_pred CccCcEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE
Confidence 0 00 112233444455678999999999998864 233333324676667
Q ss_pred EecCeEEEccCC
Q 011476 322 MPYGMVVWSTGI 333 (485)
Q Consensus 322 i~~D~vi~a~G~ 333 (485)
+.+|+||-|-|.
T Consensus 150 i~ad~vVgADG~ 161 (392)
T PRK08243 150 LDCDFIAGCDGF 161 (392)
T ss_pred EEeCEEEECCCC
Confidence 999999999994
No 356
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.36 E-value=0.00052 Score=64.45 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=34.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
.|||||+|.|||+|+..+...+-.|+|+|+...+|+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 7999999999999999999888889999999888875
No 357
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.35 E-value=0.0024 Score=64.74 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 279 ~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+...+.+.+.+.|++++.+++|++++. +.+.+.. .+|+. +.+|.||.|.|.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vI~AdG~ 165 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTL-SDGSV--LEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEE-CCCCE--EEeCEEEEcCCC
Confidence 3456667777788999999999999863 3455443 56664 899999999994
No 358
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.34 E-value=0.0027 Score=66.98 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=37.7
Q ss_pred HHHHHHHHHh-CCcEEEcCceEEEEeC--CcEEEEEc-CCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+.+ .|+++++++++++++. +++++... .+|+..++.+|.||-|.|.
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~ 172 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGA 172 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCC
Confidence 3445555555 4999999999999964 44554432 2575556999999999994
No 359
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.33 E-value=0.0028 Score=64.61 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHHHHHHhC-CcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 283 FAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 283 ~~~~~l~~~-gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
.+.+.+.+. ||++++++++++++. +.+.+....++...++.+|+||.|.|. ...+
T Consensus 126 ~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~--~S~v 183 (415)
T PRK07364 126 ALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA--RSPI 183 (415)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC--Cchh
Confidence 344444443 799999999999864 344444322343345999999999994 4444
No 360
>PLN02676 polyamine oxidase
Probab=97.31 E-value=0.00019 Score=74.45 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=37.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCC-cEEEEcCCCCcccCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSY-DVQVISPRNYFAFTP 97 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~-~V~lie~~~~~~~~~ 97 (485)
..++|+|||||++||+||++|++.|. +|+|+|+++.+|+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 45799999999999999999999998 699999999998853
No 361
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.29 E-value=0.0027 Score=63.98 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=63.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------------------c--c-----
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------M--F----- 276 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------------------~--~----- 276 (485)
+|+|||||+.|+-+|..|.+. |.+|+++++.+.... . +
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~ 72 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQS--------------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALD 72 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhC--------------CCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhh
Confidence 799999999999999999986 567777765543210 0 0
Q ss_pred -------------------------------------cHHHHHHHHHHHHhCC-cEEEcCceEEEEeC--CcEEEEEcCC
Q 011476 277 -------------------------------------DKRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGN 316 (485)
Q Consensus 277 -------------------------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~v~~--~~v~~~~~~~ 316 (485)
...+...+.+.+++.| ++++ ++++++++. +.+.+.. .+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~-~~ 150 (388)
T PRK07608 73 AARLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTL-AD 150 (388)
T ss_pred hhcCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEE-CC
Confidence 1223344556667777 9998 888998853 4455443 45
Q ss_pred CeEEEEecCeEEEccCC
Q 011476 317 GETSSMPYGMVVWSTGI 333 (485)
Q Consensus 317 G~~~~i~~D~vi~a~G~ 333 (485)
|.+ +.+|.||.|.|.
T Consensus 151 g~~--~~a~~vI~adG~ 165 (388)
T PRK07608 151 GQV--LRADLVVGADGA 165 (388)
T ss_pred CCE--EEeeEEEEeCCC
Confidence 654 899999999994
No 362
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.29 E-value=0.0016 Score=65.18 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=62.9
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHH-------------
Q 011476 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAF------------- 283 (485)
Q Consensus 226 vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~------------- 283 (485)
|+|||||+.|+.+|..|.+. .++.+|.++++.+.+.+ .+.+.....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 79999999999999999864 13789999998774332 111111111
Q ss_pred ---------------------HHHH-HHhCCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 284 ---------------------AEEK-FSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 284 ---------------------~~~~-l~~~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
+.+. +++.+..++++++|++++++++++ .+|++ +.+|.||.|.|..+
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l---~dg~~--~~A~~VI~A~G~~s 138 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDL---APGTR--INARSVIDCRGFKP 138 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEE---CCCCE--EEeeEEEECCCCCC
Confidence 1111 222244477789999997777665 35765 99999999999643
No 363
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.28 E-value=0.00019 Score=76.12 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
.++.+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999864
No 364
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00037 Score=68.78 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC-CCcccCCCcc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR-NYFAFTPLLP 100 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~-~~~~~~~~~~ 100 (485)
...++|||||||.||..||...++.|.+.+|+..+ +..+++++-|
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNP 71 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNP 71 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCc
Confidence 45789999999999999999999999999999855 3455544433
No 365
>PLN02697 lycopene epsilon cyclase
Probab=97.27 E-value=0.0025 Score=66.33 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=63.9
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc----------------------------
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------------------------- 275 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~---------------------------- 275 (485)
-.|+|||||+.|+-+|..+++. |.+|.++++...+.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~--------------Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhC--------------CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 3899999999999999999885 5666666543211100
Q ss_pred --------------cc-HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCC
Q 011476 276 --------------FD-KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (485)
Q Consensus 276 --------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~ 335 (485)
++ ..+.+.+.+.+.+.|+++ .++.|+++.. +.+.++...+|.+ +.++.||.|+|..+
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~--i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRV--IPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcE--EECCEEEECCCcCh
Confidence 11 123355566667789998 6778888863 4444333345654 99999999999643
No 366
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.27 E-value=0.00047 Score=67.30 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=34.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
+.+|||||||.+|+++|..|.++|++|+|+|++..+-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 46899999999999999999999999999998765444
No 367
>PTZ00367 squalene epoxidase; Provisional
Probab=97.27 E-value=0.00025 Score=74.58 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
..++|+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999875
No 368
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.25 E-value=0.0002 Score=69.48 Aligned_cols=44 Identities=27% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcC------CCCCcEEEEcCCCCcccCCCc
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLN------NPSYDVQVISPRNYFAFTPLL 99 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~------~~g~~V~lie~~~~~~~~~~~ 99 (485)
....||+|||||||||+||+.|. ....+|+|+|+....|++.+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 44689999999999999999886 456789999999988886443
No 369
>PRK07190 hypothetical protein; Provisional
Probab=97.24 E-value=0.0042 Score=64.53 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
...+.+.+++.|++++.+++|++++. +++.+.. .+|++ +.|+.||.|.|.
T Consensus 112 e~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~~--v~a~~vVgADG~ 163 (487)
T PRK07190 112 EKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGER--IQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCcE--EEeCEEEECCCC
Confidence 34556667788999999999999963 4455443 45653 899999999993
No 370
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.23 E-value=0.0003 Score=73.51 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
...+||+|||||..|+++|+.|+.+|.+|+|+|+.+...++
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 34589999999999999999999999999999999755443
No 371
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.22 E-value=0.00072 Score=71.72 Aligned_cols=88 Identities=20% Similarity=0.347 Sum_probs=63.9
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~l~~~ 291 (485)
..+++|+|||+|++|+.+|..|.+. |.+|+++++.+.+.. .++.+....-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM--------------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999986 689999998765421 23445555555677889
Q ss_pred CcEEEcCceE-EEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMV-VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v-~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
|++++.++.+ ..+..+. . ...+|.||+|+|.
T Consensus 201 Gv~~~~~~~~~~~~~~~~---------~--~~~~D~Vi~AtG~ 232 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ---------L--EGEFDAVFVAIGA 232 (564)
T ss_pred CCEEEeCCEECCcCCHHH---------H--HhhCCEEEEeeCC
Confidence 9999988765 3321111 0 1248999999994
No 372
>PRK09126 hypothetical protein; Provisional
Probab=97.20 E-value=0.0033 Score=63.52 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=33.9
Q ss_pred HhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 289 SRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
+..|++++.++++++++. +.+.+.. ++|++ +.+|.||.|.| ....+
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~a~~vI~AdG--~~S~v 169 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDDGAQVTL-ANGRR--LTARLLVAADS--RFSAT 169 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCCeEEEEE-cCCCE--EEeCEEEEeCC--CCchh
Confidence 346999999999999864 3344443 56764 99999999999 45544
No 373
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.20 E-value=0.0046 Score=65.42 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=36.8
Q ss_pred HHHHHHHHhC-CcEEEcCceEEEEeC--CcEEEEE-cCCCeEEEEecCeEEEccCCCCCcch
Q 011476 282 AFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKV-RGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 282 ~~~~~~l~~~-gV~v~~~~~v~~v~~--~~v~~~~-~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
..+.+.+.+. ++++++++++++++. +.+.+.. ..+|+ .++.+|.||.|.| .+..+
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~ad~vVgADG--~~S~v 187 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YTLEADWVIACDG--ARSPL 187 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EEEEeCEEEECCC--CCcHH
Confidence 4455555554 799999999999964 3444332 12343 3489999999999 44444
No 374
>PRK05868 hypothetical protein; Validated
Probab=97.19 E-value=0.005 Score=61.76 Aligned_cols=47 Identities=9% Similarity=0.311 Sum_probs=34.6
Q ss_pred hCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHH
Q 011476 290 RDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (485)
Q Consensus 290 ~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (485)
..|+++++++++++++. +.+++.. .+|++ +.+|+||-|-|. +..+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~-~dg~~--~~adlvIgADG~--~S~vR~ 164 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTF-ERAAA--REFDLVIGADGL--HSNVRR 164 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEE-CCCCe--EEeCEEEECCCC--CchHHH
Confidence 35899999999999864 3465554 56765 889999999994 444433
No 375
>PRK06753 hypothetical protein; Provisional
Probab=97.19 E-value=0.0051 Score=61.69 Aligned_cols=98 Identities=15% Similarity=0.316 Sum_probs=64.0
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-----cccHHH-------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-----MFDKRI------------------- 280 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-----~~~~~~------------------- 280 (485)
+|+|||||+.|+-+|..|++. |.+|+|+++.+.+.. .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~--------------g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~ 67 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ--------------GHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQI 67 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCc
Confidence 799999999999999999986 577777776653210 000000
Q ss_pred -----------------------------HHHHHHHHHh--CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeE
Q 011476 281 -----------------------------TAFAEEKFSR--DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMV 327 (485)
Q Consensus 281 -----------------------------~~~~~~~l~~--~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~v 327 (485)
...+.+.|.+ .+.++++++++++++. +++.+.. .+|+. +.+|+|
T Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~~~v 144 (373)
T PRK06753 68 LSTMNLLDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHF-ADGES--EAFDLC 144 (373)
T ss_pred ccceeEEcCCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEE-CCCCE--EecCEE
Confidence 0112223322 2467889999999864 3455554 56765 899999
Q ss_pred EEccCCCCCcchHH
Q 011476 328 VWSTGIAPHAIIKD 341 (485)
Q Consensus 328 i~a~G~~~~p~~~~ 341 (485)
|-|-| ....+..
T Consensus 145 igadG--~~S~vR~ 156 (373)
T PRK06753 145 IGADG--IHSKVRQ 156 (373)
T ss_pred EECCC--cchHHHH
Confidence 99999 4544433
No 376
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.18 E-value=0.0028 Score=66.36 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=62.0
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCc-ccc--c---------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD-HIL--N--------------------------- 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~-~~l--~--------------------------- 274 (485)
.|+|||||+.|+++|..+++. |.+|.++++.. .+. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~--------------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARM--------------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHc--------------CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 799999999999999999986 67888887762 110 0
Q ss_pred ------------------------cccH-HHHHHHHHHHHhC-CcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCe
Q 011476 275 ------------------------MFDK-RITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 275 ------------------------~~~~-~~~~~~~~~l~~~-gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~ 326 (485)
.+|. .....+.+.+++. |+.++ ...++++. ++.+..+...+|.. +.|+.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~--I~Ak~ 148 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLE--FRAKA 148 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCE--EECCE
Confidence 0010 0123334445544 88875 45677763 45565555567765 99999
Q ss_pred EEEccCC
Q 011476 327 VVWSTGI 333 (485)
Q Consensus 327 vi~a~G~ 333 (485)
||+|+|.
T Consensus 149 VIlATGT 155 (618)
T PRK05192 149 VVLTTGT 155 (618)
T ss_pred EEEeeCc
Confidence 9999993
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.17 E-value=0.0051 Score=62.02 Aligned_cols=98 Identities=23% Similarity=0.385 Sum_probs=69.0
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC-cccccc-----c----------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA-DHILNM-----F---------------------- 276 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~-~~~l~~-----~---------------------- 276 (485)
.|+|||||++|+-+|..|.+. |.+|+|+++. ..+.+. +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~--------------G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARA--------------GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 799999999999999999996 6788888776 111100 0
Q ss_pred ---------------------------------cHHHHHHHHHHHHhCC-cEEEcCceEEEEeC--CcEEEEEcCCCeEE
Q 011476 277 ---------------------------------DKRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGNGETS 320 (485)
Q Consensus 277 ---------------------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~v~~--~~v~~~~~~~G~~~ 320 (485)
...+...+.+.+.+.+ |+++.++.|+.++. +.+.++...+|++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~- 148 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET- 148 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE-
Confidence 0123344556666655 99999999999974 3466443227774
Q ss_pred EEecCeEEEccCCCCCcchH
Q 011476 321 SMPYGMVVWSTGIAPHAIIK 340 (485)
Q Consensus 321 ~i~~D~vi~a~G~~~~p~~~ 340 (485)
+.||+||-|-| .+..+.
T Consensus 149 -~~a~llVgADG--~~S~vR 165 (387)
T COG0654 149 -LDADLLVGADG--ANSAVR 165 (387)
T ss_pred -EecCEEEECCC--CchHHH
Confidence 99999999999 454443
No 378
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.17 E-value=0.0043 Score=62.96 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=35.8
Q ss_pred HHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 283 FAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+++.|++++.++++++++. +++.+.. .+|++ +.+|.||.|.|.
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vVgAdG~ 166 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTL-ADGRQ--LRAPLVVAADGA 166 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC
Confidence 344556667999999999999864 3455443 56754 899999999994
No 379
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.17 E-value=0.007 Score=61.23 Aligned_cols=93 Identities=24% Similarity=0.381 Sum_probs=66.7
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc------------------cc----------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------MF---------- 276 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~------------------~~---------- 276 (485)
.|+|||+||.|.-+|..|++. |.+|.++++++.+.. ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~--------------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKA--------------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHc--------------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 799999999999999999997 456666655432110 00
Q ss_pred -----------------------cHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEcc
Q 011476 277 -----------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWST 331 (485)
Q Consensus 277 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~ 331 (485)
-..+.+++.+..++.|++++.++++..+. ++++......++ .++.++.||.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~a~~vI~Ad 148 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--DEVRAKVVIDAD 148 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--EEEEcCEEEECC
Confidence 12234567778889999999999999986 344444443333 359999999999
Q ss_pred CC
Q 011476 332 GI 333 (485)
Q Consensus 332 G~ 333 (485)
|.
T Consensus 149 G~ 150 (396)
T COG0644 149 GV 150 (396)
T ss_pred Cc
Confidence 93
No 380
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.17 E-value=0.0043 Score=62.42 Aligned_cols=50 Identities=8% Similarity=0.132 Sum_probs=36.6
Q ss_pred HHHHHHHHHh-CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+.+ .|++++.+++++++.. +++++.. .+|+. +.+|.||.|.|.
T Consensus 108 ~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vV~AdG~ 160 (382)
T TIGR01984 108 GQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTL-DNGQQ--LRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC
Confidence 3444555566 4999999999999853 4455544 56664 899999999994
No 381
>PRK13984 putative oxidoreductase; Provisional
Probab=97.16 E-value=0.00098 Score=71.37 Aligned_cols=89 Identities=22% Similarity=0.213 Sum_probs=65.8
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------c--cccHHHHHHHHHHHHhC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~--~~~~~~~~~~~~~l~~~ 291 (485)
.++++++|||+|+.|+.+|..|.+. |.+|+++++.+... + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~--------------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM--------------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999986 68999998877542 1 13445555556788899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
||+++.++.+.. .+.. .+. ...+|.||+|+|.
T Consensus 347 gv~~~~~~~v~~----~~~~---~~~---~~~yD~vilAtGa 378 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPL---EEL---REKHDAVFLSTGF 378 (604)
T ss_pred CcEEECCCEeCC----cCCH---HHH---HhcCCEEEEEcCc
Confidence 999999987732 1110 111 2579999999995
No 382
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0066 Score=62.66 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=52.5
Q ss_pred CceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 260 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
+..-+|+...+..+. +..+...+....++.|+.|+.++.|+++. .++...+.+.-|. |++..||=|+|++
T Consensus 171 ~v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~---iet~~~VNaaGvW 242 (856)
T KOG2844|consen 171 DVYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS---IETECVVNAAGVW 242 (856)
T ss_pred HheeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc---eecceEEechhHH
Confidence 345577777775432 34567888899999999999999999985 3444455555677 8999999999964
No 383
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.004 Score=63.78 Aligned_cols=136 Identities=19% Similarity=0.318 Sum_probs=81.7
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCce-EEEEecCcccc----------------------cc--c--
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHIL----------------------NM--F-- 276 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~-Vtlv~~~~~~l----------------------~~--~-- 276 (485)
.+|+|||||++|+-+|..|.+.+ .. +.++++++.+. +. +
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999999984 44 77777664221 00 1
Q ss_pred ------cHHHHHHHHHHHHhCCcEE--EcCceEEEEe--C-CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHH
Q 011476 277 ------DKRITAFAEEKFSRDGIDV--KLGSMVVKVT--D-KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ 345 (485)
Q Consensus 277 ------~~~~~~~~~~~l~~~gV~v--~~~~~v~~v~--~-~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~ 345 (485)
-.++..++...+++.++.. ..++.|..+. . ++...+..++|...++.+|.||+|+|.-..|++..+
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--- 151 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--- 151 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC---
Confidence 0126778888888876443 3444444443 3 234334334555433779999999998777777554
Q ss_pred hCCCC-CCceeeCCCccc---cCCCCeEEeccccC
Q 011476 346 VGQTN-RRALATDEWLRV---EGSDSIYALGDCAT 376 (485)
Q Consensus 346 ~g~~~-~g~i~vd~~l~t---~~~~~Vya~GD~~~ 376 (485)
.|++. .|.+.--....- ..-++|-+||--+.
T Consensus 152 ~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 152 AGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCccCCCceEEchhcCCCccccCCCeEEEECCCcc
Confidence 23322 344332211110 12356787776544
No 384
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.11 E-value=0.00036 Score=70.09 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=32.0
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCc
Q 011476 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~ 93 (485)
.+|+|||||++|+.||..|++.|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 37999999999999999999999999999987653
No 385
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.00045 Score=68.50 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=34.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCC-CCCcEEEEcCCCCcccC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNYFAFT 96 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~-~g~~V~lie~~~~~~~~ 96 (485)
..+|||||||.|||+||.+|-. ...+++|+|..++.|+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4599999999999999999994 45679999999999985
No 386
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.09 E-value=0.0082 Score=60.59 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC----Cc-
Q 011476 234 TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD----KE- 308 (485)
Q Consensus 234 ~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~----~~- 308 (485)
+++|+=+.+.++..+ ++.+. ...-+.+... ++ -+.+..-+.+.|+++||.|.++++|+.++- +.
T Consensus 174 Sa~E~rRyl~Rf~h~-----~~~l~---~l~~l~~T~Y--NQ-yeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~ 242 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHE-----IPGLN---DLSGLDRTKY--NQ-YESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKK 242 (500)
T ss_pred hHHHHHHHHHHHHHh-----cCCCC---CccccccCcc--cc-HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCe
Confidence 567777777776422 22221 1222222211 22 346677889999999999999999999852 21
Q ss_pred -E-EEEEcCCCeEEEE---ecCeEEEccC
Q 011476 309 -I-FTKVRGNGETSSM---PYGMVVWSTG 332 (485)
Q Consensus 309 -v-~~~~~~~G~~~~i---~~D~vi~a~G 332 (485)
+ .+....+|.+..| +-|+|++..|
T Consensus 243 ~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 243 TATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred eEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 1 1222245655545 3689999988
No 387
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.08 E-value=0.0072 Score=61.25 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHh-CCcEEEcCceEEEEeC--CcEEEEE--cCCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~--~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+.+.+.+ .||++++++++++++. +++.+.. ..+++ ++.+|+||-|-|.
T Consensus 111 ~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~--~~~adlvIgADG~ 165 (400)
T PRK06475 111 SALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE--TVSAAYLIACDGV 165 (400)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc--EEecCEEEECCCc
Confidence 444444544 4899999999999964 3444432 22333 3899999999994
No 388
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.05 E-value=0.0016 Score=66.67 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=28.3
Q ss_pred EECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 63 VLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 63 IIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
|||+|.||++||..+++.|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999864
No 389
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.04 E-value=0.0023 Score=61.74 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
....||+|||||.+|-+.|+.|++.|.+|.|||+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 44679999999999999999999999999999976
No 390
>PRK11445 putative oxidoreductase; Provisional
Probab=97.03 E-value=0.012 Score=58.61 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=33.2
Q ss_pred HhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 289 SRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.||+++.++.+++++. +++.+....+|+..++.+|.||.|.|.
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 356899999999999863 444444334565446899999999994
No 391
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.02 E-value=0.0088 Score=60.13 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=36.2
Q ss_pred HHHHHHHHhCC-cEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~~g-V~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+.+.+.+.| ++++.+++|++++. +++.+.. .+|+. +.+|.||.|.|.
T Consensus 110 ~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~~~~vi~adG~ 161 (385)
T TIGR01988 110 QALWERLQEYPNVTLLCPARVVELPRHSDHVELTL-DDGQQ--LRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEE-CCCCE--EEeeEEEEeCCC
Confidence 44455566666 99999999999863 4455443 56765 899999999994
No 392
>PRK07045 putative monooxygenase; Reviewed
Probab=97.02 E-value=0.0074 Score=60.89 Aligned_cols=58 Identities=12% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHHHHHHHH-hCCcEEEcCceEEEEeC--Cc-EEEEEcCCCeEEEEecCeEEEccCCCCCcchHH
Q 011476 280 ITAFAEEKFS-RDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (485)
Q Consensus 280 ~~~~~~~~l~-~~gV~v~~~~~v~~v~~--~~-v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~ 341 (485)
+.+.+.+.+. ..|++++++++++.++. ++ +..+...+|++ +.+|+||-|.| ....+..
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~--~~~~~vIgADG--~~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGER--VAPTVLVGADG--ARSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCE--EECCEEEECCC--CChHHHH
Confidence 3344444544 35899999999999964 33 22333356764 89999999999 4544444
No 393
>PRK10015 oxidoreductase; Provisional
Probab=97.02 E-value=0.0079 Score=61.48 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+...+.+.+++.|++++.+++|+++.. +.+..+. .++. ++.+|.||.|.|.
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~-~~~~--~i~A~~VI~AdG~ 162 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQ-AGDD--ILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEE-eCCe--EEECCEEEEccCc
Confidence 344567777888999999999998753 3454443 2333 3999999999994
No 394
>PRK07588 hypothetical protein; Provisional
Probab=97.01 E-value=0.0066 Score=61.30 Aligned_cols=40 Identities=8% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.|++++++++|++++. +++.+.. ++|+. +.+|+||-|.|.
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~d~vIgADG~ 156 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTF-ERGTP--RDFDLVIGADGL 156 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEE-CCCCE--EEeCEEEECCCC
Confidence 4799999999999964 3455544 57775 789999999994
No 395
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.01 E-value=0.0006 Score=72.46 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
+.||||||+|.||++||..+++.|.+|+|+|+.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4599999999999999999999999999999876544
No 396
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.00061 Score=64.16 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=36.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
+.|++|||+|.+|+-+|..|+..|.+|.|||++++.||.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 368999999999999999888999999999999999985
No 397
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.00 E-value=0.00077 Score=68.65 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
..+||+|||+|.+|+.+|..|++.|.+|+++|+++++|+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE 42 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence 3589999999999999999999999999999999999985
No 398
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.00 E-value=0.00056 Score=71.59 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=35.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
..||||||+| ||++||+.+++.|.+|+|||+.+..++..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 5699999999 99999999999999999999998766643
No 399
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.99 E-value=0.0075 Score=60.82 Aligned_cols=93 Identities=19% Similarity=0.335 Sum_probs=61.7
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc------------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~------------------------------ 274 (485)
.|+|||||+.|+-+|..|.+. |.+|+|+++.+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~--------------g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--------------GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 389999999999999999875 567777775542110
Q ss_pred --------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 275 --------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 275 --------------~~-~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
.+ ...+.+.+.+.+.+.|++++ ...++.+..+ ....+...+|+. +.++.||.|+|..
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~--~~a~~VI~A~G~~ 140 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQR--IQARLVIDARGFG 140 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCE--EEeCEEEECCCCc
Confidence 00 12233555566677799886 4567777543 233333356654 8999999999953
No 400
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.99 E-value=0.00082 Score=70.92 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCcc
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP 100 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~ 100 (485)
....+||||||+| +|++||..++..|.+|+|||+.+.++++....
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 3447899999999 89999999999999999999999888875444
No 401
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.97 E-value=0.0015 Score=71.41 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.1
Q ss_pred hhcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC
Q 011476 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (485)
Q Consensus 221 ~~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~ 269 (485)
..+|+|+|||+||.|+.+|..|++. |.+||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~--------------Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS--------------GHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC--------------CCeEEEEccc
Confidence 4789999999999999999999985 7999999975
No 402
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.97 E-value=0.0079 Score=60.73 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHHHHHhC-CcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~~-gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+++. ||+++.+++++++.. +.+.+.. .+|++ +.+|.||.|.|.
T Consensus 115 ~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 167 (391)
T PRK08020 115 QLALWQALEAHPNVTLRCPASLQALQRDDDGWELTL-ADGEE--IQAKLVIGADGA 167 (391)
T ss_pred HHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEE-CCCCE--EEeCEEEEeCCC
Confidence 34455555665 999999999999863 3444443 46654 899999999994
No 403
>PRK09897 hypothetical protein; Provisional
Probab=96.96 E-value=0.01 Score=61.98 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=30.5
Q ss_pred HhCC--cEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 289 SRDG--IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 289 ~~~g--V~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.| +.++.+++|++++. +++.+....+|.. +.+|.||+|+|.
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~--i~aD~VVLAtGh 164 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS--ETFDLAVIATGH 164 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE--EEcCEEEECCCC
Confidence 4555 78888999999964 3455544233444 889999999995
No 404
>PLN03000 amine oxidase
Probab=96.95 E-value=0.00074 Score=73.24 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
...++|+|||||++|+++|+.|...|++|+|+|+++..|+..
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 346899999999999999999999999999999999998854
No 405
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.92 E-value=0.011 Score=60.12 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=33.3
Q ss_pred HHHHHh-CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 285 EEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 285 ~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+ .||+++.++++++++. +.+.+.. .+|+. +.+|+||-|.|.
T Consensus 118 ~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~lvIgADG~ 166 (405)
T PRK08850 118 LEQVQKQDNVTLLMPARCQSIAVGESEAWLTL-DNGQA--LTAKLVVGADGA 166 (405)
T ss_pred HHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEE-CCCCE--EEeCEEEEeCCC
Confidence 333444 4799999999999853 3455444 56765 999999999993
No 406
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.91 E-value=0.00082 Score=65.07 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEE--e--CCc---EEEEEcCCC-eEEEEecCeEEEccCCCCCcchHHHHHHhCC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKV--T--DKE---IFTKVRGNG-ETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v--~--~~~---v~~~~~~~G-~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~ 348 (485)
...++...++..|++|++++.|.+| + +.+ |.+.....+ ....+.++.||+|.| .-++..|+...|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAG---ai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAG---AIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SH---HHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccC---CCCChhhhccccc
Confidence 4556666666669999999999999 4 222 555553333 245678899999999 3445477777776
No 407
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.007 Score=61.47 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=68.2
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-------------c--------------
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-------------M-------------- 275 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-------------~-------------- 275 (485)
.++++|||+|++|+-.|..|.+. |.++++++|.+.+.. .
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--------------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--------------GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--------------CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 35999999999999999999996 678888877654321 0
Q ss_pred ---------------cc-HHHHHHHHHHHHhCCc--EEEcCceEEEEeCC--cEEEEEc-CCCe-EEEEecCeEEEccCC
Q 011476 276 ---------------FD-KRITAFAEEKFSRDGI--DVKLGSMVVKVTDK--EIFTKVR-GNGE-TSSMPYGMVVWSTGI 333 (485)
Q Consensus 276 ---------------~~-~~~~~~~~~~l~~~gV--~v~~~~~v~~v~~~--~v~~~~~-~~G~-~~~i~~D~vi~a~G~ 333 (485)
.+ .++.++++..++.-++ .+.+++.+.+++.. +...+.. .+++ ..+.-||.|++|+|.
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGH 151 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccC
Confidence 01 1455666777776665 57778877777642 2222221 2222 234679999999996
Q ss_pred CCCcchH
Q 011476 334 APHAIIK 340 (485)
Q Consensus 334 ~~~p~~~ 340 (485)
...|++.
T Consensus 152 ~~~P~~P 158 (448)
T KOG1399|consen 152 YVEPRIP 158 (448)
T ss_pred cCCCCCC
Confidence 4336653
No 408
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.88 E-value=0.001 Score=67.98 Aligned_cols=92 Identities=29% Similarity=0.454 Sum_probs=26.3
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc-----------c-------------------
Q 011476 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-----------M------------------- 275 (485)
Q Consensus 226 vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~-----------~------------------- 275 (485)
|||||||+.|+-.|..+++. |.+|.|+++.+.+.. .
T Consensus 2 VVVvGgG~aG~~AAi~AAr~--------------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARA--------------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHT--------------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHC--------------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 89999999999999999996 789999988775421 0
Q ss_pred -------------------cc-HHHHHHHHHHHHhCCcEEEcCceEEEEeCC--cEEEEEc--CCCeEEEEecCeEEEcc
Q 011476 276 -------------------FD-KRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR--GNGETSSMPYGMVVWST 331 (485)
Q Consensus 276 -------------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~--~v~~~~~--~~G~~~~i~~D~vi~a~ 331 (485)
++ ......+.+.+++.||++++++.+.++..+ +++.+.. .+| ..++.++.+|-|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 00 001123455566789999999999998643 3333322 224 4569999999999
Q ss_pred C
Q 011476 332 G 332 (485)
Q Consensus 332 G 332 (485)
|
T Consensus 147 G 147 (428)
T PF12831_consen 147 G 147 (428)
T ss_dssp -
T ss_pred c
Confidence 9
No 409
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.87 E-value=0.00086 Score=70.86 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=35.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC--CcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--YFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~--~~~~~ 96 (485)
...||||||+|.|||+||..+++.|.+|+|||+.+ ..++.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 35799999999999999999999999999999998 55554
No 410
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.87 E-value=0.013 Score=59.13 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
.|++++.++++++++. +++++.. .+|++ +.+|+||.|.| ....+
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~~~lvIgADG--~~S~v 169 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTL-ESGAE--IEAKWVIGADG--ANSQV 169 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEE-CCCCE--EEeeEEEEecC--CCchh
Confidence 4799999999999863 4455444 56765 99999999999 45544
No 411
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.86 E-value=0.00092 Score=70.62 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=36.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
..||||||+|.+|+++|..+++.|.+|+|||+.+..+++.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5799999999999999999999999999999988777653
No 412
>PRK12839 hypothetical protein; Provisional
Probab=96.86 E-value=0.0011 Score=70.05 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=37.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 97 (485)
....+|+|||+|.+|+++|+.+++.|.+|+|||+...++++.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 346799999999999999999999999999999988777753
No 413
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.85 E-value=0.019 Score=59.98 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEE--cCCCeEEEEecCeEEEccC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~--~~~G~~~~i~~D~vi~a~G 332 (485)
+...+.+.+++.||++++++.++++.. +++..+. ..+|+..++.++.||+|+|
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 344556666788999999999999864 3333221 1344555699999999998
No 414
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.85 E-value=0.0012 Score=70.19 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=36.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
...||||||+|.||++||+.+++.|.+|+|+|+.+..++.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3579999999999999999999999999999999877664
No 415
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.0011 Score=64.77 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=35.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCc--EEEEcCCCCcccC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYD--VQVISPRNYFAFT 96 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~--V~lie~~~~~~~~ 96 (485)
...++|+|+|||.+||++|++|++.+-+ |+|+|+.++.|+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 4568999999999999999999977665 5669999998874
No 416
>PLN02976 amine oxidase
Probab=96.80 E-value=0.0014 Score=73.96 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=38.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
....++|+|||||++|+++|+.|...|++|+|+|+++.+|+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 345689999999999999999999999999999999888875
No 417
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.77 E-value=0.0016 Score=68.56 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
...||||||+|.||++||..++ .|.+|+|+|+.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4579999999999999999996 5999999999876544
No 418
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.77 E-value=0.014 Score=58.54 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHHHHHhC-CcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 281 TAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 281 ~~~~~~~l~~~-gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
...+.+.+.+. +++++.+++++++.. +++.+.. .++ . +.+|+||-|-| .+..+
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~~-~--~~adlvIgADG--~~S~v 162 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDK-Q--IKCNLLIICDG--ANSKV 162 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEE-cCC-E--EeeCEEEEeCC--CCchh
Confidence 34445555555 489999999999853 4455444 444 3 99999999999 45444
No 419
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.76 E-value=0.016 Score=58.60 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.3
Q ss_pred cEEEECCChhHHHHHHHHHHhh
Q 011476 225 HFVIVGGGPTGVEFAAELHDFV 246 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~ 246 (485)
+|+||||||.|+-+|..|++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G 23 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG 23 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC
Confidence 7999999999999999999863
No 420
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.75 E-value=0.016 Score=58.45 Aligned_cols=94 Identities=24% Similarity=0.466 Sum_probs=60.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC-ccc-------------------------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA-DHI------------------------------- 272 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~-~~~------------------------------- 272 (485)
.|+||||||.|+-+|..|++. |.+|.++++. +..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~--------------G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~ 67 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA--------------GIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRM 67 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEE
Confidence 699999999999999999986 4555555554 100
Q ss_pred -----------cc-------ccc-HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcC-----CCeEEEEecCe
Q 011476 273 -----------LN-------MFD-KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRG-----NGETSSMPYGM 326 (485)
Q Consensus 273 -----------l~-------~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~-----~G~~~~i~~D~ 326 (485)
++ .++ ..+.+.+.+.+.+.|++++.. .++++.. +.+.+.... +|+..++.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~ 146 (388)
T TIGR02023 68 ISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADV 146 (388)
T ss_pred EcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCE
Confidence 00 011 123345566667789999765 5887753 334333211 23334599999
Q ss_pred EEEccCC
Q 011476 327 VVWSTGI 333 (485)
Q Consensus 327 vi~a~G~ 333 (485)
||-|.|.
T Consensus 147 VI~AdG~ 153 (388)
T TIGR02023 147 VIGADGA 153 (388)
T ss_pred EEECCCC
Confidence 9999994
No 421
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.72 E-value=0.017 Score=58.26 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHHHhC-CcEEEcCceEEEEe--CCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~~-gV~v~~~~~v~~v~--~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+.+.+.+. ++. +.+++|++++ ++++.+.. ++|+. +.+|.||.|.|.
T Consensus 115 ~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (388)
T PRK07494 115 RALEARVAELPNIT-RFGDEAESVRPREDEVTVTL-ADGTT--LSARLVVGADGR 165 (388)
T ss_pred HHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEE-CCCCE--EEEeEEEEecCC
Confidence 4444555555 466 7789999885 34455543 56654 899999999994
No 422
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.72 E-value=0.015 Score=58.70 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHhCCcEEEcCceEEEEe---CCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 283 FAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~v~---~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+.|+.++++.+++++. ++.+.+....+|+..++.+|+||-|-|.
T Consensus 108 ~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 108 DLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred HHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 34444556788888888777663 2333333212676556899999999994
No 423
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.72 E-value=0.026 Score=57.05 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=38.0
Q ss_pred HHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCC
Q 011476 284 AEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (485)
Q Consensus 284 ~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~ 348 (485)
+.+.+++.|+++++++.|.+++. +.+.+.. .+| . +.+|.||+|+|.. ...+++.+|+
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~-~~g-~--i~ad~vV~A~G~~----s~~l~~~~g~ 213 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEHANGVVVRT-TQG-E--YEARTLINCAGLM----SDRLAKMAGL 213 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE-CCC-E--EEeCEEEECCCcc----hHHHHHHhCC
Confidence 34445677999999999998863 3344433 445 2 8999999999942 2245555554
No 424
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.70 E-value=0.027 Score=58.94 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHHhCCcEEEcCceEEEEeC--CcEEE--EEcCCCeEEEEecCeEEEccCC
Q 011476 285 EEKFSRDGIDVKLGSMVVKVTD--KEIFT--KVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 285 ~~~l~~~gV~v~~~~~v~~v~~--~~v~~--~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+++.|++++.++.|+++.. +.+.+ ....+|+..++.++.||.|+|.
T Consensus 162 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~ 214 (508)
T PRK12266 162 ARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGP 214 (508)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCc
Confidence 3456778999999999999853 22322 2223465556999999999993
No 425
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.67 E-value=0.032 Score=57.81 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEe--CCcEEEEEc--CCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVR--GNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~~~~--~~G~~~~i~~D~vi~a~G~ 333 (485)
..+.+.+++.|++++++++++++. ++++..+.. .+|+...+.++.||+|+|-
T Consensus 135 ~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 135 NALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 345556677899999999999986 334443322 3455556899999999983
No 426
>PRK07538 hypothetical protein; Provisional
Probab=96.67 E-value=0.018 Score=58.54 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=31.8
Q ss_pred HHHHHHh-CC-cEEEcCceEEEEeC--CcEEEE--EcCCCeEEEEecCeEEEccCC
Q 011476 284 AEEKFSR-DG-IDVKLGSMVVKVTD--KEIFTK--VRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 284 ~~~~l~~-~g-V~v~~~~~v~~v~~--~~v~~~--~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+.+.+ .| +.+++++++++++. +++.+. ...+|+..++.+|+||-|-|.
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~ 163 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGI 163 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCC
Confidence 3333433 35 57999999999864 333322 212344445999999999995
No 427
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.64 E-value=0.033 Score=57.18 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--C-cE---EEEEcCCCeEEEEecCeEEEccCC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EI---FTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~-~v---~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+...+.+.+++.||++++++.++++.. + .+ .+.. .+++...+.++.||+|+|-
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 445566667788999999999999863 2 23 3332 3455556889999999994
No 428
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.63 E-value=0.0021 Score=73.60 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 96 (485)
....||||||+|.||++||..+++.|.+|+|+|+.+..++.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999877664
No 429
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.60 E-value=0.0094 Score=62.50 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=87.6
Q ss_pred ccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc-------ccc-----cHHHHHHHHHHHHhC
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NMF-----DKRITAFAEEKFSRD 291 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l-------~~~-----~~~~~~~~~~~l~~~ 291 (485)
++++|||.|..|..+..++.+... .-.+||++...++.- +-+ -+++.-.-....+++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~ 72 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEEN 72 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHc
Confidence 389999999999999999888432 246788886555431 111 123344445778899
Q ss_pred CcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHhCCCCCCceeeCCCccccCCCCeEEe
Q 011476 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYAL 371 (485)
Q Consensus 292 gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~g~~~~g~i~vd~~l~t~~~~~Vya~ 371 (485)
||+++++..++.|+.+...+.. +.|.+ +.+|-+|+||| +.|+...+. |.+..+-+ .+| +..+++|+
T Consensus 73 ~i~L~~~~~v~~idr~~k~V~t-~~g~~--~~YDkLilATG--S~pfi~PiP---G~~~~~v~----~~R--~i~D~~am 138 (793)
T COG1251 73 GITLYTGEKVIQIDRANKVVTT-DAGRT--VSYDKLIIATG--SYPFILPIP---GSDLPGVF----VYR--TIDDVEAM 138 (793)
T ss_pred CcEEEcCCeeEEeccCcceEEc-cCCcE--eecceeEEecC--ccccccCCC---CCCCCCee----EEe--cHHHHHHH
Confidence 9999999999999987655554 56776 89999999999 788663211 11111211 133 35678888
Q ss_pred ccccCC
Q 011476 372 GDCATV 377 (485)
Q Consensus 372 GD~~~~ 377 (485)
+||+..
T Consensus 139 ~~~ar~ 144 (793)
T COG1251 139 LDCARN 144 (793)
T ss_pred HHHHhc
Confidence 887553
No 430
>PRK06996 hypothetical protein; Provisional
Probab=96.60 E-value=0.019 Score=58.12 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCe-EEEEecCeEEEccC
Q 011476 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGE-TSSMPYGMVVWSTG 332 (485)
Q Consensus 278 ~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~-~~~i~~D~vi~a~G 332 (485)
..+.+.+.+.+++.|++++.++++++++. +++++.. .+|. ..++.+|+||-|-|
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~-~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLAL-GTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEE-CCCCcceEEeeeEEEECCC
Confidence 34567777888888999999999999864 4466554 3331 13499999999999
No 431
>PRK06185 hypothetical protein; Provisional
Probab=96.56 E-value=0.027 Score=57.14 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHHHHHHHHh-CCcEEEcCceEEEEeC--CcEE-E-EEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIF-T-KVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~-~-~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
...+.+.+++ .||+++.+++++++.. +.+. + ....+|+ .++.+|.||.|.|.
T Consensus 111 ~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~vI~AdG~ 167 (407)
T PRK06185 111 LDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADLVVGADGR 167 (407)
T ss_pred HHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCEEEECCCC
Confidence 3444555555 4899999999999853 3332 1 1223453 34899999999994
No 432
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.56 E-value=0.027 Score=57.39 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=29.1
Q ss_pred CcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 292 GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 292 gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
++.++++++|++++. +++.+.. .+|+. +.+|.||.|.|.
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vVgADG~ 157 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLF-TDGTE--YRCDLLIGADGI 157 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEE-cCCCE--EEeeEEEECCCc
Confidence 456788999998863 4455554 56764 899999999995
No 433
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.56 E-value=0.0033 Score=61.14 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=67.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCC----CCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeE
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~----~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 133 (485)
++.|-|||+|+-|-..|+.|.+ .|.+|.=+-.+.+. .+.+-++.+...-.+-+++.|+.|+ -++.
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------m~kiLPeyls~wt~ekir~~GV~V~-pna~ 415 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------MEKILPEYLSQWTIEKIRKGGVDVR-PNAK 415 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----------hhhhhHHHHHHHHHHHHHhcCceec-cchh
Confidence 5789999999999999988873 45566533333221 1222222333344566778898874 6777
Q ss_pred EEEEecCCCE--EEEecCCccCCCCCceEEeecCEEEEccCCCCCCC
Q 011476 134 CFKIDAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (485)
Q Consensus 134 v~~id~~~~~--v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 178 (485)
|.++....+. +.+.+|. ++..|.||+|+|..||..
T Consensus 416 v~sv~~~~~nl~lkL~dG~----------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGS----------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhccceEEEecCCC----------eeeeeeEEEEecCCCchh
Confidence 8777655444 4556665 999999999999999864
No 434
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.56 E-value=0.024 Score=59.49 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=61.4
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc------------------cc------------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI------------------LN------------ 274 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~------------------l~------------ 274 (485)
.|+|||+|+.|+++|..+++. |.+|.++++.... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~--------------G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~ 67 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARM--------------GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA 67 (617)
T ss_pred eEEEECccHHHHHHHHHHHHC--------------CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH
Confidence 589999999999999999986 5667777654210 00
Q ss_pred ------------------------cccH-HHHHHHHHHHHhC-CcEEEcCceEEEEe---CCcEEEEEcCCCeEEEEecC
Q 011476 275 ------------------------MFDK-RITAFAEEKFSRD-GIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYG 325 (485)
Q Consensus 275 ------------------------~~~~-~~~~~~~~~l~~~-gV~v~~~~~v~~v~---~~~v~~~~~~~G~~~~i~~D 325 (485)
++|. .+...+.+.+++. |+.++.+ .++++. ++.+..+...+|.. +.||
T Consensus 68 ~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~--I~Ad 144 (617)
T TIGR00136 68 ADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLK--FRAK 144 (617)
T ss_pred HHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCE--EECC
Confidence 0111 1223455556666 8888766 455552 34555555566764 9999
Q ss_pred eEEEccCCC
Q 011476 326 MVVWSTGIA 334 (485)
Q Consensus 326 ~vi~a~G~~ 334 (485)
.||+|+|..
T Consensus 145 ~VILATGtf 153 (617)
T TIGR00136 145 AVIITTGTF 153 (617)
T ss_pred EEEEccCcc
Confidence 999999953
No 435
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.52 E-value=0.0033 Score=66.80 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=37.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~ 98 (485)
...+|||||+|++|+++|..+++.|.+|+|+|+.+..+++..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 357999999999999999999999999999999887777643
No 436
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.49 E-value=0.0021 Score=68.27 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEECCcHHHHHHHHhcC----CCCCcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~----~~g~~V~lie~~~~ 92 (485)
||||||||.|||+||..++ ..|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999998753
No 437
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.43 E-value=0.044 Score=55.29 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHh-CCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 283 FAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 283 ~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+.+ .|++++.+++++++.. +++.+.. .+|.. +.+|.||.|.|.
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 167 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTL-DDGET--LTGRLLVAADGS 167 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC
Confidence 34444444 4899999999999853 3455443 45654 899999999994
No 438
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.41 E-value=0.023 Score=56.99 Aligned_cols=93 Identities=24% Similarity=0.361 Sum_probs=62.0
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc--ccc---------c------------------
Q 011476 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI--LNM---------F------------------ 276 (485)
Q Consensus 226 vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~--l~~---------~------------------ 276 (485)
|+|||||+.|+-+|..|.+.. .+.+|.++++.+.. -+. .
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999994431 36788888765543 110 0
Q ss_pred ----------------cHHHHHHHHHHHHhCCcEEEcCceEEEEeCCcE-EEEEcCCCeEEEEecCeEEEccCC
Q 011476 277 ----------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEI-FTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 277 ----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~~~v-~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
...+.+.+.+.+...| .+..++.|.+|+.+.. ..+.+.+|+. +.++.||-|.|.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~--i~a~~VvDa~g~ 140 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRT--IRARVVVDARGP 140 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCE--EEeeEEEECCCc
Confidence 0112344455555345 4667888999976442 3334467775 999999999994
No 439
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.40 E-value=0.0054 Score=60.48 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCC--CcEEEEcCCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g--~~V~lie~~~~ 92 (485)
...++|+|||||-++...+..|.+.+ .+|+++.+++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 45789999999999999999998554 58999998854
No 440
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.38 E-value=0.03 Score=57.54 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=20.0
Q ss_pred cEEEECCChhHHHHHHHHHHh
Q 011476 225 HFVIVGGGPTGVEFAAELHDF 245 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~ 245 (485)
.|+||||||.|.-+|..|++.
T Consensus 41 DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 899999999999999999986
No 441
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.28 E-value=0.047 Score=58.68 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCC--cEEEcCceEEEEeCC-----cEEEEEc-C----CCeEEEEecCeEEEccCCCCCcch
Q 011476 280 ITAFAEEKFSRDG--IDVKLGSMVVKVTDK-----EIFTKVR-G----NGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 280 ~~~~~~~~l~~~g--V~v~~~~~v~~v~~~-----~v~~~~~-~----~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
+.+.+.+.+.+.| |++..++++++++.+ .+++... . +|+..++.+|+||-|-| .+..+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDG--a~S~V 212 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDG--ARSRV 212 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCC--CchHH
Confidence 4455666666665 578899999998632 2444321 1 45445699999999999 44444
No 442
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.28 E-value=0.0036 Score=65.91 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCccc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~ 95 (485)
...||||||+|.||++||..+++. .+|+|+|+....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 346999999999999999999876 89999999876544
No 443
>PRK02106 choline dehydrogenase; Validated
Probab=96.25 E-value=0.0042 Score=65.90 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC-CCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~-~g~~V~lie~~~~ 92 (485)
..+|+||||+|.||+.+|..|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34799999999999999999998 8999999999854
No 444
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.23 E-value=0.071 Score=53.04 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=79.1
Q ss_pred hhcccEEEECCCh---hH----HH-----------HHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccccc--ccHHH
Q 011476 221 KRILHFVIVGGGP---TG----VE-----------FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM--FDKRI 280 (485)
Q Consensus 221 ~~~~~vvVVGgG~---~g----~e-----------~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~--~~~~~ 280 (485)
+.|+++++=|+|= +- .+ +-..|.++..++....|.++ |.. +..++..++.|. -..++
T Consensus 12 ~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~--Gi~-~~~e~~grvfP~S~~A~sV 88 (376)
T TIGR03862 12 SVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGL--GIE-TFVGSSGRVFPVEMKAAPL 88 (376)
T ss_pred CccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHC--CCc-eEECCCCEECCCCCCHHHH
Confidence 3577899999872 10 11 22233444455556666552 332 334455566663 34677
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcch------HHHHHHhCC
Q 011476 281 TAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII------KDFMKQVGQ 348 (485)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~------~~l~~~~g~ 348 (485)
.+.+...+++.||++++++.|++|++++..+....++. .+.+|.||+|+|-...|.+ -.+++++|.
T Consensus 89 v~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~--~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh 160 (376)
T TIGR03862 89 LRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQS--TIEADAVVLALGGASWSQLGSDGAWQQVLDQRGV 160 (376)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCce--EEecCEEEEcCCCccccccCCCcHHHHHHHHCCC
Confidence 88999999999999999999999955544444322223 3899999999996554544 256788875
No 445
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0039 Score=59.11 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=70.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEE--EEEeE
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDIC--FWEAE 133 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~--~~~~~ 133 (485)
..+-+.+|||||+.+|.||-.|.-.|++|+|.=++--+-+ + .+++.+...+.+...|+.+. +...+
T Consensus 196 ~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG------F------Dqdmae~v~~~m~~~Gikf~~~~vp~~ 263 (503)
T KOG4716|consen 196 YEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG------F------DQDMAELVAEHMEERGIKFLRKTVPER 263 (503)
T ss_pred CCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc------c------cHHHHHHHHHHHHHhCCceeeccccee
Confidence 3456889999999999999999999999999876632111 1 23677778888999997642 12335
Q ss_pred EEEEecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCCCC
Q 011476 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (485)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~ 177 (485)
|..++...-.|..++.. .+++.+-.||.+++|.|-.+..
T Consensus 264 Veq~~~g~l~v~~k~t~-----t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 264 VEQIDDGKLRVFYKNTN-----TGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eeeccCCcEEEEeeccc-----ccccccchhhhhhhhhccccch
Confidence 55555433233323221 2223366799999999987643
No 446
>PLN02985 squalene monooxygenase
Probab=96.19 E-value=0.07 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred ccEEEECCChhHHHHHHHHHHhh
Q 011476 224 LHFVIVGGGPTGVEFAAELHDFV 246 (485)
Q Consensus 224 ~~vvVVGgG~~g~e~A~~l~~~~ 246 (485)
.+|+|||||+.|+-+|..|++.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC
Confidence 38999999999999999998863
No 447
>PRK07121 hypothetical protein; Validated
Probab=96.17 E-value=0.091 Score=54.82 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--C-cEEEEE-cCCCeEEEEec-CeEEEccCC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIFTKV-RGNGETSSMPY-GMVVWSTGI 333 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~-~v~~~~-~~~G~~~~i~~-D~vi~a~G~ 333 (485)
+...+.+.+++.|+++++++.++++.. + ++..+. ..+++...+.+ +.||+|+|-
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 344555666778999999999999842 2 343322 13455556888 999999993
No 448
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.0074 Score=62.21 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
..++|+|+|+|.+|+++|..|+..|++|+++|+.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35799999999999999999999999999999864
No 449
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.07 E-value=0.083 Score=54.37 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEe--C-CcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSRDGIDVKLGSMVVKVT--D-KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~v~--~-~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.|.+...+.||+++.++ |+++. + +.+..+.+.+|++ +.+|++|-|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~--i~ad~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRT--IEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEE--EEESEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCE--EEEeEEEECCCc
Confidence 444666678899999886 55553 3 3465565567775 999999999994
No 450
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.02 E-value=0.0055 Score=68.54 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...||+|||||.||++||..++..|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998763
No 451
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.99 E-value=0.0058 Score=64.10 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcc
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~ 94 (485)
.+.||||||||.|||.||..++..|.+|+|+|+.+...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 46799999999999999999999999999999875443
No 452
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.95 E-value=0.02 Score=51.97 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=30.0
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~ 269 (485)
.+++++|||||.+|..-+..|.+. |.+|+++...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--------------ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--------------GAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--------------CCEEEEEcCC
Confidence 467999999999999999999986 7899999654
No 453
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.92 E-value=0.0029 Score=55.99 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=32.0
Q ss_pred CeEEEECCcHHHHHHHHhcC--CCCCcEEEEcCCCCccc
Q 011476 59 KKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAF 95 (485)
Q Consensus 59 ~~vvIIG~G~aGl~aA~~L~--~~g~~V~lie~~~~~~~ 95 (485)
.+|||||+|.+||++|+.+. ++..+|.|||..-..|+
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 58999999999999999998 67789999998755444
No 454
>PRK08275 putative oxidoreductase; Provisional
Probab=95.90 E-value=0.12 Score=54.85 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEe---CCcEE---EEEcCCCeEEEEecCeEEEccCC
Q 011476 281 TAFAEEKFSRDGIDVKLGSMVVKVT---DKEIF---TKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 281 ~~~~~~~l~~~gV~v~~~~~v~~v~---~~~v~---~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
...+.+.+++.||+++.++.++++. ++.+. .....+|+...+.++.||+|+|-
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 3455555677899999999999984 22333 22334676566889999999994
No 455
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.87 E-value=0.016 Score=42.43 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=28.0
Q ss_pred EECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc
Q 011476 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (485)
Q Consensus 228 VVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l 273 (485)
|||+|.+|+-+|..|.+. +.+|+|+++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--------------g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--------------GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--------------TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--------------CCcEEEEecCcccC
Confidence 899999999999999986 68999999998763
No 456
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.85 E-value=0.1 Score=55.52 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHhCCcEEEcCceEEEEe--CCcEE---EEEcCCCeEEEEecCeEEEccC
Q 011476 284 AEEKFSRDGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 284 ~~~~l~~~gV~v~~~~~v~~v~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (485)
+.+.+++.||+++.++.++++. ++.+. .....+|+...+.++.||+|+|
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 188 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATG 188 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCC
Confidence 3444566789999999998874 33333 2233466655689999999999
No 457
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.74 E-value=0.011 Score=62.06 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
...+|+||||+|+||..+|..|+..|++|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 456899999999999999999999999999999885
No 458
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.72 E-value=0.012 Score=47.14 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
..++|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4689999999999999999999999999999976
No 459
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.016 Score=55.36 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEE
Q 011476 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (485)
Q Consensus 55 ~~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v 134 (485)
...+++++|||||+.++.+|--++..|.++.|+=+.+.+.-. + .+.+.....+.+...|++++ .+..+
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~----------F-D~~i~~~v~~~~~~~ginvh-~~s~~ 253 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG----------F-DEMISDLVTEHLEGRGINVH-KNSSV 253 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc----------h-hHHHHHHHHHHhhhcceeec-ccccc
Confidence 456899999999999999998899999999988776543210 0 11334445666777888875 55556
Q ss_pred EEEecCCC---EEEEecCCccCCCCCceEEeecCEEEEccCCCCCCCC
Q 011476 135 FKIDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (485)
Q Consensus 135 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 179 (485)
+.+..... .+..+.+. ....|.|+.|+|-.|+..+
T Consensus 254 ~~v~K~~~g~~~~i~~~~~----------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 254 TKVIKTDDGLELVITSHGT----------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred eeeeecCCCceEEEEeccc----------cccccEEEEEecCCCCccc
Confidence 55543322 22222221 4459999999999987653
No 460
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.062 Score=48.28 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=61.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHh---hCcCCCCCceEEEEecCccccccc-----cHHHHHHHHHHHHhCCcEEE
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFK---LYPKVKDSVKITLLEAADHILNMF-----DKRITAFAEEKFSRDGIDVK 296 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~---~~p~~~~g~~Vtlv~~~~~~l~~~-----~~~~~~~~~~~l~~~gV~v~ 296 (485)
+|+|||+||.+.-.|..+++.--+.+.- ....+.+|-+.|--..-+. .|.| .+++.+.+.+..++.|.+++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veN-fPGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVEN-FPGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecccc-CCCCCcccccHHHHHHHHHHHHhhcceee
Confidence 8999999999999999988852000000 0011222333322211111 2333 46677888888888899987
Q ss_pred cCceEEEEeCCc--EEEEEcCCCeEEEEecCeEEEccCC
Q 011476 297 LGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 297 ~~~~v~~v~~~~--v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+.+ |.+++-.+ ..+.. +.+. +.+|.||+|+|.
T Consensus 89 tEt-Vskv~~sskpF~l~t--d~~~--v~~~avI~atGA 122 (322)
T KOG0404|consen 89 TET-VSKVDLSSKPFKLWT--DARP--VTADAVILATGA 122 (322)
T ss_pred eee-hhhccccCCCeEEEe--cCCc--eeeeeEEEeccc
Confidence 655 66665433 44443 3333 889999999994
No 461
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.034 Score=53.88 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=60.6
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc--------c--ccHHHHHHHHHHHHhCCcE
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN--------M--FDKRITAFAEEKFSRDGID 294 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~--------~--~~~~~~~~~~~~l~~~gV~ 294 (485)
+|.|||+||.|+-.|..|.+. .++.+|+++++.+.... . .-..+.+.+.+.++.....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~------------~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKR------------HPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhc------------CCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 899999999999999998874 14689999999987543 1 1233456677778888888
Q ss_pred EEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 295 v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
+..|.+| +..+.+..+ +-.+|.|++|+|-
T Consensus 90 f~gNv~v----G~dvsl~eL------~~~ydavvLaYGa 118 (468)
T KOG1800|consen 90 FFGNVKV----GRDVSLKEL------TDNYDAVVLAYGA 118 (468)
T ss_pred EEeccee----cccccHHHH------hhcccEEEEEecC
Confidence 8777665 122222221 1247888888884
No 462
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.51 E-value=0.15 Score=44.15 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=25.5
Q ss_pred EEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC
Q 011476 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (485)
Q Consensus 227 vVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~ 269 (485)
+|||+|+.|+-++..|.+.. ......+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~---------~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA---------DPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc---------CCCCCCEEEEEcCC
Confidence 59999999999999999873 01135678888653
No 463
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.49 E-value=0.013 Score=61.88 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g-~~V~lie~~~~ 92 (485)
|+||||||.||+.+|..|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999887 79999998863
No 464
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.073 Score=54.85 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=54.7
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceE
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (485)
++|+++|+|+|.+|+.+|..|++. |.+|+++++... +.+ ....+.+.+.|++++.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--------------G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~ 62 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--------------GAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYP 62 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcc
Confidence 357999999999999999999986 789999988642 122 22234466778887655443
Q ss_pred EEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcch
Q 011476 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (485)
Q Consensus 302 ~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~ 339 (485)
.+ . .-.+|.||.++|. .++.
T Consensus 63 ~~--------------~--~~~~d~vv~~~g~--~~~~ 82 (450)
T PRK14106 63 EE--------------F--LEGVDLVVVSPGV--PLDS 82 (450)
T ss_pred hh--------------H--hhcCCEEEECCCC--CCCC
Confidence 20 0 0248999999995 4444
No 465
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.45 E-value=0.01 Score=58.56 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=41.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCCcccCCCccccccC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG 105 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~~ 105 (485)
++.+|+||||+|.-||.||.+|++.|.+|+++|++...++......+..|
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccc
Confidence 56789999999999999999999999999999999777765444444444
No 466
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.43 E-value=0.16 Score=54.10 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=35.4
Q ss_pred HHHHHHHhCCcEEEcCceEEEEe--CCcEE---EEEcCCCeEEEEecCeEEEccCC
Q 011476 283 FAEEKFSRDGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~v~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+.+.+++.||+++.++.++++. ++.+. .....+|+...+.++.||+|+|-
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 34555666789999999998874 33333 22334666556899999999993
No 467
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.048 Score=52.21 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=69.0
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecC-----------cccc---ccccHHHHHHHHHHH
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA-----------DHIL---NMFDKRITAFAEEKF 288 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~-----------~~~l---~~~~~~~~~~~~~~l 288 (485)
.-.|+||||||.|...|...++.+ .+.-++-.+ ..+. ....+.+...+++..
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKG--------------iRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv 276 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKG--------------IRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHV 276 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhc--------------chhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHH
Confidence 348999999999999999988864 333332110 0111 134577888999999
Q ss_pred HhCCcEEEcCceEEEEeC----CcEEEEEcCCCeEEEEecCeEEEccCCC
Q 011476 289 SRDGIDVKLGSMVVKVTD----KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (485)
Q Consensus 289 ~~~gV~v~~~~~v~~v~~----~~v~~~~~~~G~~~~i~~D~vi~a~G~~ 334 (485)
++..|.++..-+.+++++ ++..-+.+.+|-. +.+..+|++||.+
T Consensus 277 ~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGav--LkaktvIlstGAr 324 (520)
T COG3634 277 KQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAV--LKARTVILATGAR 324 (520)
T ss_pred hhcCchhhhhhhhhcceecCCCCccEEEEecCCce--eccceEEEecCcc
Confidence 999999998888887765 4444444567876 9999999999953
No 468
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.31 E-value=0.022 Score=57.25 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~ 272 (485)
+|+|||||++|+++|..|++. |.+|+|+++++..
T Consensus 4 dVvVIGGGlAGleAAlaLAr~--------------Gl~V~LiE~rp~~ 37 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKR--------------GVPVELYEMRPVK 37 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhC--------------CCcEEEEEccCcc
Confidence 899999999999999999986 7999999977654
No 469
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.29 E-value=0.018 Score=54.70 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
..+|+|||+|.|||-||..|+..|.+|+|+|.+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 47999999999999999999999999999997753
No 470
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29 E-value=0.046 Score=55.65 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHh-CCcEEEcCceEEEE--eCC-cEEEEEcCCCeEEEEecCeEEEccC
Q 011476 283 FAEEKFSR-DGIDVKLGSMVVKV--TDK-EIFTKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 283 ~~~~~l~~-~gV~v~~~~~v~~v--~~~-~v~~~~~~~G~~~~i~~D~vi~a~G 332 (485)
.+++.++. .++.++.+. |.++ +++ .+..+.+.+|.. +.|+.||++||
T Consensus 105 ~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~--~~a~aVVlTTG 155 (621)
T COG0445 105 AMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPE--FHAKAVVLTTG 155 (621)
T ss_pred HHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCe--eecCEEEEeec
Confidence 34444444 377776554 3443 234 377777788987 99999999999
No 471
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.25 E-value=0.21 Score=53.84 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHhCCcEEEcCceEEEEe--CCcEEEE---EcCCCeEEEEecCeEEEccC
Q 011476 287 KFSRDGIDVKLGSMVVKVT--DKEIFTK---VRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 287 ~l~~~gV~v~~~~~v~~v~--~~~v~~~---~~~~G~~~~i~~D~vi~a~G 332 (485)
.+++.||++++++.++++. ++.+..+ ...+|+...+.++.||+|||
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATG 229 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATG 229 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCC
Confidence 4556789999999888874 3343332 22356656789999999999
No 472
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.22 E-value=0.096 Score=47.48 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=29.1
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEec
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEA 268 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~ 268 (485)
.+++++|||||.+|...+..|.+. |.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--------------ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--------------GAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEcC
Confidence 467999999999999999999886 689999964
No 473
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.11 E-value=0.22 Score=50.99 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEe--CCcEEEE-EcCCCeEEEEecCeEEEccCC
Q 011476 279 RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTK-VRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 279 ~~~~~~~~~l~~-~gV~v~~~~~v~~v~--~~~v~~~-~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.+...+.+.+++ .||++++++.++++. ++.+..+ ...++....+.++.||+|+|-
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 344455555554 599999999999974 3333321 112455446889999999993
No 474
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.05 E-value=0.017 Score=50.23 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~ 91 (485)
+|.|||||..|.++|..|+..|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999874
No 475
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.03 E-value=0.093 Score=48.72 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~ 272 (485)
+|+|||+|..|+-+|..|... |.+||+++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a--------------G~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA--------------GREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc--------------CcEEEEEEcCCCc
Confidence 799999999999999999986 7899999877543
No 476
>PLN02785 Protein HOTHEAD
Probab=95.02 E-value=0.025 Score=59.99 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 56 ~~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...+|++|||||.||+.+|..|.. +.+|+|||+.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446899999999999999999998 699999998864
No 477
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.99 E-value=0.24 Score=52.31 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEe--CCc-EEE---EEcCCCeEEEEecCeEEEccCC
Q 011476 282 AFAEEKFSRDGIDVKLGSMVVKVT--DKE-IFT---KVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 282 ~~~~~~l~~~gV~v~~~~~v~~v~--~~~-v~~---~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
..+.+.+++.||++++++.++++. +++ +.. ....+|+...+.++.||+|||-
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 344555666789999999999874 233 432 2224676667899999999993
No 478
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.98 E-value=0.026 Score=55.72 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l 273 (485)
+|+|||||+.|+-+|..|++. |.+|+|+++.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~--------------G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA--------------GIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--------------TCEEEEEESSSSCC
T ss_pred eEEEECCCHHHHHHHHHHHhc--------------ccccccchhccccc
Confidence 799999999999999999997 79999999988754
No 479
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.98 E-value=0.026 Score=51.30 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=31.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
..++|+|||||..|...+..|...|.+|+|++++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3579999999999999999999999999999976
No 480
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.94 E-value=0.031 Score=48.45 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
..++|+|||||..|..-+..|...|++|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4689999999999999999999999999999754
No 481
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.91 E-value=0.27 Score=52.17 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHhCCcEEEcCceEEEEe--CCcEEE---EEcCCCeEEEEecCeEEEccC
Q 011476 283 FAEEKFSRDGIDVKLGSMVVKVT--DKEIFT---KVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 283 ~~~~~l~~~gV~v~~~~~v~~v~--~~~v~~---~~~~~G~~~~i~~D~vi~a~G 332 (485)
.+.+.+++.||+++.++.++++. ++.+.. ....+|+...+.++.||+|||
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 34444556788888888888875 333333 232355656789999999999
No 482
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.90 E-value=0.27 Score=48.27 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=54.8
Q ss_pred HHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEeC--CcEEEEEcCCCeEEEEecCe
Q 011476 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (485)
Q Consensus 249 ~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (485)
++.+.+|.+.+...--++......+ -+..+...+.+.+++.|++++.++.|+++.. +.+..+...+|. +.+|.
T Consensus 110 e~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~---~~a~~ 184 (337)
T TIGR02352 110 ALRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGD---VQADQ 184 (337)
T ss_pred HHHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCE---EECCE
Confidence 3444566654433444554443332 2457778888999999999999999999964 445555545563 88999
Q ss_pred EEEccCC
Q 011476 327 VVWSTGI 333 (485)
Q Consensus 327 vi~a~G~ 333 (485)
||+|+|.
T Consensus 185 vV~a~G~ 191 (337)
T TIGR02352 185 VVLAAGA 191 (337)
T ss_pred EEEcCCh
Confidence 9999994
No 483
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.83 E-value=0.099 Score=57.59 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~ 271 (485)
+|+|||||+.|+-+|..|.+.+ +|.+|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCCC
Confidence 7999999999999999998852 2578888887764
No 484
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.78 E-value=0.35 Score=50.41 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEeC--CcEEEEEc-CCCeEEEEecCeEEEccCC
Q 011476 279 RITAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 279 ~~~~~~~~~l~~-~gV~v~~~~~v~~v~~--~~v~~~~~-~~G~~~~i~~D~vi~a~G~ 333 (485)
.+...+.+.+++ .||+++.++.++++.. +.+..+.. ..+....+.++.||+|+|-
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 344455566666 6999999999999853 33432211 1243346899999999994
No 485
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.71 E-value=0.038 Score=57.22 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=34.2
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l 273 (485)
+.++|+|||+|.+|+-+|..|.++ |.+|++++.++++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~--------------G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF--------------GFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--------------CCceEEEeccCCcC
Confidence 346999999999999999999998 68999999999764
No 486
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.089 Score=50.12 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=60.5
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccc---------------cc----cHHHHHHHH
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------MF----DKRITAFAE 285 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~---------------~~----~~~~~~~~~ 285 (485)
.|-|||||..|.|.|..+++. |..|.|.++++.-+. .+ -....-.++
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~--------------Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk 70 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR--------------GVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLK 70 (439)
T ss_pred ceEEEcccccccHHHHHHHHc--------------CCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHH
Confidence 789999999999999999996 799999988864321 01 112234567
Q ss_pred HHHHhCCcEEEcCceEEEEeCCc----------------------EEEEEcCCCeEEEEe-cCeEEEccC
Q 011476 286 EKFSRDGIDVKLGSMVVKVTDKE----------------------IFTKVRGNGETSSMP-YGMVVWSTG 332 (485)
Q Consensus 286 ~~l~~~gV~v~~~~~v~~v~~~~----------------------v~~~~~~~G~~~~i~-~D~vi~a~G 332 (485)
+.|+..|--++......+|-.++ +++.. ++...+| -+.+|+|||
T Consensus 71 ~EMR~lgSlii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vir---eEvt~iP~dg~~vIATG 137 (439)
T COG1206 71 AEMRLLGSLIIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIR---EEVTEIPPDGITVIATG 137 (439)
T ss_pred HHHHHhhhHHhhhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEc---cccccCCCCCcEEEecC
Confidence 77777776555555544443221 33332 4444576 578899999
No 487
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.70 E-value=0.093 Score=44.22 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceE
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 301 (485)
++++++|+|+|-+|-.++..|...+ -.+|+++.|... -.+.+.+.+....+.++.-...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-------------~~~i~i~nRt~~--------ra~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-------------AKEITIVNRTPE--------RAEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-------------SSEEEEEESSHH--------HHHHHHHHHTGCSEEEEEGGGH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------CCEEEEEECCHH--------HHHHHHHHcCccccceeeHHHH
Confidence 5679999999999999999999974 245999988642 2334444443333443322111
Q ss_pred EEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHH
Q 011476 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (485)
Q Consensus 302 ~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l 342 (485)
....-.+|.||.||+....+.....
T Consensus 70 ----------------~~~~~~~DivI~aT~~~~~~i~~~~ 94 (135)
T PF01488_consen 70 ----------------EEALQEADIVINATPSGMPIITEEM 94 (135)
T ss_dssp ----------------CHHHHTESEEEE-SSTTSTSSTHHH
T ss_pred ----------------HHHHhhCCeEEEecCCCCcccCHHH
Confidence 0001358999999996444444333
No 488
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.67 E-value=0.13 Score=44.18 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=54.4
Q ss_pred EEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcCceEEEEe
Q 011476 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT 305 (485)
Q Consensus 226 vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~v~ 305 (485)
|+|+|+|.+|.-+|..|.+. +.+|+++.|..+ .+.+++.|+.+.....-..+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--------------g~~V~l~~r~~~-------------~~~~~~~g~~~~~~~~~~~~~ 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--------------GHDVTLVSRSPR-------------LEAIKEQGLTITGPDGDETVQ 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--------------TCEEEEEESHHH-------------HHHHHHHCEEEEETTEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--------------CCceEEEEcccc-------------HHhhhheeEEEEecccceecc
Confidence 68999999999999999985 789999988541 144778899887766111111
Q ss_pred CCcEEEEEcCCCeEEEEecCeEEEccCCCCCcchHHHHHHh
Q 011476 306 DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346 (485)
Q Consensus 306 ~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~~~~l~~~~ 346 (485)
..... .......-++|.||+|+- ...+...++.+
T Consensus 54 ---~~~~~-~~~~~~~~~~D~viv~vK---a~~~~~~l~~l 87 (151)
T PF02558_consen 54 ---PPIVI-SAPSADAGPYDLVIVAVK---AYQLEQALQSL 87 (151)
T ss_dssp ---EEEEE-SSHGHHHSTESEEEE-SS---GGGHHHHHHHH
T ss_pred ---ccccc-CcchhccCCCcEEEEEec---ccchHHHHHHH
Confidence 11111 111001146899999986 34444555554
No 489
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=0.47 Score=47.94 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccc
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~ 272 (485)
+|+|||||++|+.+|..|.+.-. +...|++++..+.+
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~-----------~~~~Isi~e~~~~~ 39 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPR-----------PSGLISIFEPRPNF 39 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-----------CCCceEEecccccc
Confidence 89999999999999999998632 12238888666543
No 490
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.54 E-value=0.38 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.3
Q ss_pred cEEEECCChhHHHHHHHHHHh
Q 011476 225 HFVIVGGGPTGVEFAAELHDF 245 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~ 245 (485)
.|+|||+|..|+-+|..+++.
T Consensus 3 DVvVVGaG~AGl~AAi~aae~ 23 (466)
T PRK08401 3 KVGIVGGGLAGLTAAISLAKK 23 (466)
T ss_pred eEEEECccHHHHHHHHHHHHC
Confidence 799999999999999999875
No 491
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.50 E-value=0.43 Score=50.41 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEeC--C-cEE---EEEc---CCCeEEEEecCeEEEccCC
Q 011476 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIF---TKVR---GNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 280 ~~~~~~~~l~~~gV~v~~~~~v~~v~~--~-~v~---~~~~---~~G~~~~i~~D~vi~a~G~ 333 (485)
+...+.+.+++.||+++.++.++++.. + .+. +... .++....+.++.||+|+|-
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 344455566677889999999888742 2 332 2211 1222345899999999983
No 492
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.31 E-value=0.048 Score=49.45 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCC
Q 011476 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (485)
Q Consensus 57 ~~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~ 90 (485)
..++|+|||||-.|...+..|...|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999999999999999999864
No 493
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.31 E-value=0.11 Score=48.02 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=54.3
Q ss_pred cEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCccccccccHHHHHHHHHHHHhCCcEEEcC------
Q 011476 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLG------ 298 (485)
Q Consensus 225 ~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~------ 298 (485)
+++|||||..|+.||..|+.+. +..+|.|+..++-+-.- .....+-+++++-.|+=...
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~ 65 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPD 65 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhccc
Confidence 3789999999999999999973 45789998776533111 11122233333322221000
Q ss_pred --ce---EEEEeCCcEEEEEcCCCeEEEEecCeEEEccCCCCCcc
Q 011476 299 --SM---VVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (485)
Q Consensus 299 --~~---v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~~~~p~ 338 (485)
.- |+.++..+-.+. +.+|.+ +.++.+++|+| ..|.
T Consensus 66 f~~~~~~v~~~~s~ehci~-t~~g~~--~ky~kKOG~tg--~kPk 105 (334)
T KOG2755|consen 66 FRRFLNDVVTWDSSEHCIH-TQNGEK--LKYFKLCLCTG--YKPK 105 (334)
T ss_pred HHHHHHhhhhhccccceEE-ecCCce--eeEEEEEEecC--CCcc
Confidence 00 222222222222 356876 89999999999 5663
No 494
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.31 E-value=0.4 Score=51.59 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=28.4
Q ss_pred cEEEcCceEEEEe--CCcEE---EEEcCCCeEEEEecCeEEEccC
Q 011476 293 IDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTG 332 (485)
Q Consensus 293 V~v~~~~~v~~v~--~~~v~---~~~~~~G~~~~i~~D~vi~a~G 332 (485)
|+++.++.++++. ++.+. .....+|+...+.++.||+|+|
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATG 210 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATG 210 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCC
Confidence 8888888888874 33333 2233467666789999999999
No 495
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.26 E-value=0.44 Score=50.99 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=30.4
Q ss_pred CCcEEEcCceEEEEe--CC-cEEEE---EcCCCeEEEEecCeEEEccCC
Q 011476 291 DGIDVKLGSMVVKVT--DK-EIFTK---VRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 291 ~gV~v~~~~~v~~v~--~~-~v~~~---~~~~G~~~~i~~D~vi~a~G~ 333 (485)
.||++++++.++++. ++ .+..+ ...+|+...+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 379999999999874 22 34333 223566566899999999983
No 496
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.19 E-value=0.039 Score=57.00 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 60 ~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
+|+|||.|++|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 497
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.15 E-value=0.11 Score=52.73 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=64.2
Q ss_pred EEECCcHHHHHHH-HhcC----CCCCcEEEEcCCCCcccCCCccccccCcccccccccchHHHHhhCCCeEEEEEeEEEE
Q 011476 62 VVLGTGWAGTSFL-KNLN----NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (485)
Q Consensus 62 vIIG~G~aGl~aA-~~L~----~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~v~~ 136 (485)
+|++.|.-|+..+ ..++ ..|.+|++++..+. .++. . ++...+.+.+++.|+++ +.+++|..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp-----slpG----~----rL~~aL~~~l~~~Gv~I-~~g~~V~~ 284 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP-----SVPG----L----RLQNALRRAFERLGGRI-MPGDEVLG 284 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC-----CCch----H----HHHHHHHHHHHhCCCEE-EeCCEEEE
Confidence 6688888888777 3333 57999999986542 2222 1 45666778888889887 46788988
Q ss_pred EecCCCEEEEecCCccCCCCCceEEeecCEEEEccCCCC
Q 011476 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (485)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~~~yd~lviAtG~~~ 175 (485)
++..+..+...... +++...+.+|.+|+|+|...
T Consensus 285 v~~~~~~V~~v~~~-----~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 285 AEFEGGRVTAVWTR-----NHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred EEEeCCEEEEEEee-----CCceEEEECCEEEEeCCCcc
Confidence 87665554431111 22234789999999999854
No 498
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.13 E-value=0.029 Score=53.06 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=57.2
Q ss_pred cccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCcccc--ccc---cHHHHH-----HHHHHHHhCC
Q 011476 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--NMF---DKRITA-----FAEEKFSRDG 292 (485)
Q Consensus 223 ~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~~~l--~~~---~~~~~~-----~~~~~l~~~g 292 (485)
.-+|+|||||.-|+-+|..+.+... .-+|-+++..+.-. |.+ ...+.. .-+..+--.|
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~ 106 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKG 106 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCC
Confidence 3489999999999999999988642 24788887765321 211 011100 0001111123
Q ss_pred cEEEcCceEEEEeCCcEEEEEcCCCeEEEEecCeEEEccCC
Q 011476 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (485)
Q Consensus 293 V~v~~~~~v~~v~~~~v~~~~~~~G~~~~i~~D~vi~a~G~ 333 (485)
..++. ..|+++++++=.++. .+|++ |.+|.+|+|.|+
T Consensus 107 a~wi~-ekv~~f~P~~N~v~t-~gg~e--IsYdylviA~Gi 143 (446)
T KOG3851|consen 107 ATWIK-EKVKEFNPDKNTVVT-RGGEE--ISYDYLVIAMGI 143 (446)
T ss_pred cHHHH-HHHHhcCCCcCeEEc-cCCcE--EeeeeEeeeeec
Confidence 33332 456677766544444 46776 999999999996
No 499
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.12 E-value=0.048 Score=43.56 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=29.8
Q ss_pred hcccEEEECCChhHHHHHHHHHHhhHHHHHhhCcCCCCCceEEEEecCc
Q 011476 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (485)
Q Consensus 222 ~~~~vvVVGgG~~g~e~A~~l~~~~~~~~~~~~p~~~~g~~Vtlv~~~~ 270 (485)
++++++|||||..|..-+..|.+. |.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~--------------gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA--------------GAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC--------------TBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--------------CCEEEEECCch
Confidence 567999999999999999999886 78999997653
No 500
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.11 E-value=0.033 Score=52.94 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 011476 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (485)
Q Consensus 58 ~~~vvIIG~G~aGl~aA~~L~~~g~~V~lie~~~~ 92 (485)
...|-|||||.||-.||++++++|..|.|+|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 45789999999999999999999999999997753
Done!