BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011478
(484 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
Length = 454
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 198/485 (40%), Positives = 270/485 (55%), Gaps = 57/485 (11%)
Query: 1 MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
M KK W VKK S + K KLK + Q S V+S V +
Sbjct: 1 MVKKAKWLKNVKKAFSPDSK--------KLKHESVECQDS---VIS----YPVLIATSRS 45
Query: 61 CSADEDAKLIESENKQNKHAY--TVALATAVAAEAAVAAAQAAAEVV-RLTAVARFPGKS 117
S + ++ E +Q K+ Y + TA A V + ++ E V + V RF GKS
Sbjct: 46 SSPQFEVRVDEVNYEQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQAIVVNRFAGKS 105
Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
+EE A I IQ+ FRG+LARR + +RG RLK L++G V+RQA TL+CMQTL+RVQSQ
Sbjct: 106 KEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQ 165
Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
IR+RRIRMSEENQA +QL QK KE L L+ G W+++ +SKEQ+EA + HK EA
Sbjct: 166 IRSRRIRMSEENQARHKQLLQKHAKE---LGGLKNGGNWNYSNQSKEQVEAGMLHKYEAT 222
Query: 238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS---TVD 294
+RRERALAYAF++Q+ L++ SK+ANP FMDP+NP WGWSWLERWMA RPWES
Sbjct: 223 MRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTT 282
Query: 295 NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAP 354
N D SS+K++T+R E +++ +R LN K P+TP
Sbjct: 283 NNDNSSVKNSTNRNSQGGETAKSSNRNKLNSSTK-----------------PNTP----- 320
Query: 355 STSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPS-VP 413
++S T P + S + SE RR SIA S+ D+E+L+SS +
Sbjct: 321 -SASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRS 379
Query: 414 SYMAPTQST---KARSRGTSPLGL-NGTPDKRSL----GSAKKRLSFPSSPA-GPRRHSG 464
S + PT + K +S+ +S + + T ++ S+ AKKRLS +SPA PRR S
Sbjct: 380 SNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSA 439
Query: 465 PPRVD 469
PP+V+
Sbjct: 440 PPKVE 444
>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
Length = 668
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 179/352 (50%), Gaps = 82/352 (23%)
Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
+ + KIQ AFRGY+AR++ RAL+GLVRL+ +++G+SVKRQ ++ MQ + RVQSQI
Sbjct: 321 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 380
Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVG-EEWDHTAKSKEQIEAKLQHKQEAA 237
++RRI+M ENQA + EK+ K A + G + WD + +KE+ +++ Q K +A
Sbjct: 381 QSRRIKM-LENQA-------QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAI 432
Query: 238 IRRERALAYAFSNQKMLRNSSKSA--NPTFMDPNNPHWGWSWLERWMA-ARPWESGSTVD 294
I+RER++AYA+S +K+ +NS KS N +F P W W+W++R A P S S
Sbjct: 433 IKRERSMAYAYS-RKLWKNSPKSTQDNRSF-----PQW-WNWVDRQNPLASPAPSYSQPQ 485
Query: 295 -NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSP-----TAHKLSRPPSRRQSPST 348
++ L+ + S + + S+ + R NH + +P T H SRP
Sbjct: 486 RDFRLTPSRLCPS---PLSQSSKQHHIRLDNHFDTSTPRSSRSTFHTPSRP--------- 533
Query: 349 PPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAG--SSMGDNESL 406
G SR Y R + G S D++SL
Sbjct: 534 -------------------------IHTGTSR---------YSRGRLRGQDSPFKDDDSL 559
Query: 407 ASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLG---SAKKRLSFPSS 455
S P PSYMAPT S KA+ R N P +R +G S K+R+S+P +
Sbjct: 560 TSCPPFPSYMAPTVSAKAKVRP------NSNPKERVMGTPVSEKRRMSYPPT 605
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 1 MGKKGSWFSAVKKVLSSEQKDK 22
M KKGSWFSA+K+V + K+K
Sbjct: 1 MVKKGSWFSAIKRVFTPHSKEK 22
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 25/170 (14%)
Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
Q EIA +Q AFRGYLARRA AL+G++RL++LI+GH V+RQA TL + + R+Q+
Sbjct: 111 QREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAF 170
Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
R R IR S+ Q+ +KC +L+ LQ KL + +A
Sbjct: 171 ARGREIRKSD----IGVQVYRKC-----RLQLLQGN---------------KLANPTDAY 206
Query: 238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPW 287
+ ++ A AF+ QK+L +S K D +NP+ WLE W A+ W
Sbjct: 207 LGIKKLTANAFA-QKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255
>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
Length = 794
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 42/183 (22%)
Query: 104 VVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATT 163
+VR + + K E + V+ IQ A RG+LARR L + +++L++ ++GH V+ QA
Sbjct: 200 IVRKESDEKVDEKLDESVIVV-IQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMG 258
Query: 164 TLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSK 223
+LRC+Q + ++Q+ +RAR H+ K
Sbjct: 259 SLRCVQAIVKMQAMVRAR------------------------------------HSTKDG 282
Query: 224 EQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFM--DPNNPHWGWSWLERW 281
++ A K E ++ L F+ K L S+ P + DP P W+WLERW
Sbjct: 283 SRVSA-TSDKSEPNAAAQKLLENKFA--KHLMESTPKTKPINIKCDPTKPSSAWNWLERW 339
Query: 282 MAA 284
M+
Sbjct: 340 MSV 342
>sp|Q9H0B3|K1683_HUMAN Uncharacterized protein KIAA1683 OS=Homo sapiens GN=KIAA1683 PE=2
SV=1
Length = 1180
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Query: 121 IAVIKIQTAFRGYLARRALRAL-RGLVRLKSLIQGHSVKR------QATTTLR 166
+AVI IQ RGYLARR +R RG + +++ +G+ V+R +ATTT++
Sbjct: 928 LAVITIQAGVRGYLARRRIRLWHRGAMVIQATWRGYRVRRNLAHLCRATTTIQ 980
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus
GN=Pds5b PE=1 SV=1
Length = 1446
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 326 DNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRPPSPKGSQWG 374
D ++ P +L +P SR+++P T P + +T V+ PKGSQ G
Sbjct: 1199 DKREDPDLSELEKPRSRKKAPVTDPEEKLGMDDLTKLVQEQKPKGSQRG 1247
>sp|Q9LSP8|CMTA6_ARATH Calmodulin-binding transcription activator 6 OS=Arabidopsis
thaliana GN=CMTA6 PE=2 SV=1
Length = 838
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 108 TAVARFPGKSQEE---IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTT 164
++V +F K +E IA +KIQ AFR Y RR + A R++ Q ++R+
Sbjct: 657 SSVIQFANKEEEAKSIIAAMKIQNAFRKYDTRRKIEA---AYRIQCRFQTWKIRREYLNM 713
Query: 165 LRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKC----EKEIEKLRALQVGEEWDHTA 220
R Q + R+Q+ R + R + + + +K ++ + R LQV E D
Sbjct: 714 RR--QAI-RIQAAFRGLQARRQYKKILWSVGVLEKAVLRWRQKRKGFRGLQVAAEEDSPG 770
Query: 221 KSKEQIEAKLQHKQEAAIRR 240
+++E Q + E + R
Sbjct: 771 EAQEDFYKTSQRQAEERLER 790
>sp|Q6ZNE9|RUFY4_HUMAN RUN and FYVE domain-containing protein 4 OS=Homo sapiens GN=RUFY4
PE=2 SV=2
Length = 571
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 151 LIQGHSVKRQATTTLRCMQT----LAR--------VQSQIRARRI--RMSEENQAFQRQL 196
++QGH+ K +T +QT +AR +Q +I++ R+ R +EE Q QL
Sbjct: 376 VLQGHATKEDSTVENPQVQTEVTLVARREEQAEVSLQDEIKSLRLGLRKAEEQAQRQEQL 435
Query: 197 QQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRN 256
++ E E++ LR E+ + + +++A+L+ KQ+ A RR+ Q+ L
Sbjct: 436 LREQEGELQALR-----EQLSRCQEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQ 490
Query: 257 SSKSANPTFMDPNNPHW 273
+ K + + W
Sbjct: 491 AMKRRVLELIQEKDRLW 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.123 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,187,290
Number of Sequences: 539616
Number of extensions: 6846234
Number of successful extensions: 33679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 479
Number of HSP's that attempted gapping in prelim test: 32154
Number of HSP's gapped (non-prelim): 1790
length of query: 484
length of database: 191,569,459
effective HSP length: 121
effective length of query: 363
effective length of database: 126,275,923
effective search space: 45838160049
effective search space used: 45838160049
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)