Query 011478
Match_columns 484
No_of_seqs 304 out of 589
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 01:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 1.7E-14 3.7E-19 125.4 6.4 57 412-468 34-91 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.9 1.1E-05 2.4E-10 51.4 2.9 21 120-140 1-21 (21)
3 smart00015 IQ Short calmodulin 97.4 0.00013 2.9E-09 48.5 2.5 22 119-140 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.1 0.0007 1.5E-08 77.6 6.6 64 118-185 671-735 (862)
5 KOG0520 Uncharacterized conser 96.5 0.0017 3.7E-08 75.0 3.5 73 118-190 808-888 (975)
6 PTZ00014 myosin-A; Provisional 95.5 0.012 2.6E-07 67.9 3.9 40 122-161 779-819 (821)
7 KOG0160 Myosin class V heavy c 95.3 0.033 7.1E-07 64.4 6.6 65 118-185 694-758 (862)
8 COG5022 Myosin heavy chain [Cy 92.5 0.24 5.1E-06 59.9 6.6 65 118-183 743-808 (1463)
9 KOG0520 Uncharacterized conser 90.2 0.77 1.7E-05 54.0 7.6 63 122-184 835-930 (975)
10 KOG2128 Ras GTPase-activating 90.2 0.41 9E-06 57.6 5.5 68 119-186 564-640 (1401)
11 PF00612 IQ: IQ calmodulin-bin 89.7 0.17 3.7E-06 32.1 1.1 19 143-161 2-20 (21)
12 KOG0164 Myosin class I heavy c 87.9 1.1 2.3E-05 51.4 6.4 54 121-185 697-751 (1001)
13 KOG0163 Myosin class VI heavy 82.8 14 0.00031 43.1 12.0 34 119-152 812-846 (1259)
14 smart00015 IQ Short calmodulin 81.5 0.77 1.7E-05 30.4 1.1 19 143-161 4-22 (26)
15 PTZ00014 myosin-A; Provisional 79.7 2.7 5.8E-05 49.1 5.3 38 145-185 780-817 (821)
16 KOG4427 E3 ubiquitin protein l 79.0 1.6 3.4E-05 50.4 3.1 25 117-141 27-51 (1096)
17 KOG0942 E3 ubiquitin protein l 75.1 1.8 3.9E-05 50.6 2.3 25 117-141 26-50 (1001)
18 KOG0377 Protein serine/threoni 73.1 3.8 8.2E-05 45.0 3.9 43 118-160 15-58 (631)
19 KOG2128 Ras GTPase-activating 57.9 16 0.00034 44.9 5.4 61 124-187 539-611 (1401)
20 KOG0161 Myosin class II heavy 57.8 43 0.00094 42.9 9.3 40 121-160 774-817 (1930)
21 KOG0162 Myosin class I heavy c 57.5 7.9 0.00017 44.9 2.8 23 122-144 698-720 (1106)
22 KOG0161 Myosin class II heavy 41.3 26 0.00056 44.8 3.9 40 145-184 776-815 (1930)
23 PF08763 Ca_chan_IQ: Voltage g 40.0 26 0.00057 25.7 2.3 21 119-139 8-28 (35)
24 PF15157 IQ-like: IQ-like 27.6 45 0.00097 29.3 2.1 19 120-138 47-65 (97)
25 KOG0165 Microtubule-associated 22.4 84 0.0018 37.1 3.6 24 118-141 941-964 (1023)
26 PRK10984 DNA-binding transcrip 22.1 26 0.00056 32.5 -0.4 7 272-279 53-59 (127)
27 COG5022 Myosin heavy chain [Cy 21.5 2E+02 0.0044 36.2 6.6 66 118-184 791-858 (1463)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.52 E-value=1.7e-14 Score=125.36 Aligned_cols=57 Identities=44% Similarity=0.633 Sum_probs=48.8
Q ss_pred CCCCCCCCccccccccCCCCCCC-CCCCCCCCcCcccCcccCCCCCCCCCCCCCCCCC
Q 011478 412 VPSYMAPTQSTKARSRGTSPLGL-NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRV 468 (484)
Q Consensus 412 ~PsYMa~TeSAKAK~R~qS~p~~-~~t~e~~~~~~~kkRlS~p~sp~~~rr~s~~pk~ 468 (484)
+|||||+|||||||+|+||+|++ ++++|......++||||||.+..+....+..++.
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence 89999999999999999999999 7777765556789999999887777777766654
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.89 E-value=1.1e-05 Score=51.43 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHH
Q 011478 120 EIAVIKIQTAFRGYLARRALR 140 (484)
Q Consensus 120 e~AAI~IQsafRGylARralr 140 (484)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999985
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.38 E-value=0.00013 Score=48.54 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHH
Q 011478 119 EEIAVIKIQTAFRGYLARRALR 140 (484)
Q Consensus 119 ee~AAI~IQsafRGylARralr 140 (484)
++.+|+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.14 E-value=0.0007 Score=77.58 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
....+++.||+.||||+.|+.|.. .++++-+|+++||.++|+. ++ ...|++.+|..+|+...|+
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHH
Confidence 344578889999999999999999 4558899999999999981 11 3344444444444444333
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.53 E-value=0.0017 Score=74.98 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHhhhcccchhhhhhhh------H-HhhhhHHHHHHHHHHHHHhhhhhh
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRALRG-LVRLKSLIQGHSVKRQATTT------L-RCMQTLARVQSQIRARRIRMSEEN 189 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralraLkg-lVrLQAlvRG~~vRrqa~~t------l-r~mqAavrIQs~vR~rr~R~~~e~ 189 (484)
..-.||..||.-||||+.|+.|..++. +|++|+-|||+.+|++|... + +-+-++-++|+.+|+++.|...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 455789999999999999999999666 99999999999999999622 2 245677789999999988877554
Q ss_pred H
Q 011478 190 Q 190 (484)
Q Consensus 190 ~ 190 (484)
+
T Consensus 888 ~ 888 (975)
T KOG0520|consen 888 Q 888 (975)
T ss_pred c
Confidence 3
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.47 E-value=0.012 Score=67.91 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhh
Q 011478 122 AVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 122 AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa 161 (484)
.++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68899999999999999998 66699999999999988764
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=95.28 E-value=0.033 Score=64.40 Aligned_cols=65 Identities=28% Similarity=0.238 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralraLkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
....+++.||+.+||+++|+........+.+|..+|+++.|+++. ....+++.+|+.+|+..+|.
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~---~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYR---ALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999982223445789999999999999984 46778999999999999998
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=92.50 E-value=0.24 Score=59.86 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRI 183 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~ 183 (484)
.-...+++||++|||++.||.|.. ++.+..+|.+.+|..+++..... --.....++|..++...-
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 808 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE-LKWRLFIKLQPLLSLLGS 808 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc-hHHHhHHHhhHHhHHHhh
Confidence 345689999999999999998887 88888899999999888766322 234455666666655443
No 9
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.23 E-value=0.77 Score=53.96 Aligned_cols=63 Identities=29% Similarity=0.424 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHH-------HH-H---HHHHhhhcccchhhhhh----------------------hhHHhh
Q 011478 122 AVIKIQTAFRGYLARRALRAL-------RG-L---VRLKSLIQGHSVKRQAT----------------------TTLRCM 168 (484)
Q Consensus 122 AAI~IQsafRGylARralraL-------kg-l---VrLQAlvRG~~vRrqa~----------------------~tlr~m 168 (484)
=+|+||+++|||..|+.|+.| +- + -++|.-+||+..|.... .+.+--
T Consensus 835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~ 914 (975)
T KOG0520|consen 835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT 914 (975)
T ss_pred ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999862 11 1 23377778876665432 222334
Q ss_pred hhHHHHHHHHHHHHHh
Q 011478 169 QTLARVQSQIRARRIR 184 (484)
Q Consensus 169 qAavrIQs~vR~rr~R 184 (484)
+|+++||+.+|....+
T Consensus 915 ~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 915 RAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHhcCHHHH
Confidence 7899999999887766
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.22 E-value=0.41 Score=57.63 Aligned_cols=68 Identities=25% Similarity=0.375 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhhhh---HHHH-HH-HHHHHHHHhhhcccchhhhhhhh----HHhhhhHHHHHHHHHHHHHhhh
Q 011478 119 EEIAVIKIQTAFRGYLA---RRAL-RA-LRGLVRLKSLIQGHSVKRQATTT----LRCMQTLARVQSQIRARRIRMS 186 (484)
Q Consensus 119 ee~AAI~IQsafRGylA---Rral-ra-LkglVrLQAlvRG~~vRrqa~~t----lr~mqAavrIQs~vR~rr~R~~ 186 (484)
..-..+.||.++|||+. +..+ .. .+-+|.+|++.||+++|+.+... ..||...+.||+.+|++..|.-
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 44467899999999993 2222 22 66799999999999999998733 3689999999999999988764
No 11
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=89.70 E-value=0.17 Score=32.10 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=14.6
Q ss_pred HHHHHHHhhhcccchhhhh
Q 011478 143 RGLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 143 kglVrLQAlvRG~~vRrqa 161 (484)
+.+|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888775
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=87.91 E-value=1.1 Score=51.37 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHH-HHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 121 IAVIKIQTAFRGYLARRALRALRGL-VRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 121 ~AAI~IQsafRGylARralraLkgl-VrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
.-++.||.+|||+++|..|+.++.. +.++ ..|.+-+ -..+..||..+|+.+.++
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r 751 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMR 751 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhcc
Confidence 4689999999999999999997774 4444 4442222 234556888888877655
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.79 E-value=14 Score=43.09 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhh
Q 011478 119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI 152 (484)
Q Consensus 119 ee~AAI~IQsafRGylARralra-LkglVrLQAlv 152 (484)
...+.+++|+..||||+|++++- +-|++++-+|.
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 45678999999999999999987 77777776664
No 14
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=81.46 E-value=0.77 Score=30.42 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHhhhcccchhhhh
Q 011478 143 RGLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 143 kglVrLQAlvRG~~vRrqa 161 (484)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4578889999999998886
No 15
>PTZ00014 myosin-A; Provisional
Probab=79.69 E-value=2.7 Score=49.10 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=32.9
Q ss_pred HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
++.||+.+||++.|+.+. +..++++.||+.+|++..++
T Consensus 780 ~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 780 VSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999984 45789999999999988765
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=1.6 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHH
Q 011478 117 SQEEIAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARralra 141 (484)
.+.|.||+.||..+|||++|+.+..
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999998874
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.12 E-value=1.8 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHH
Q 011478 117 SQEEIAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARralra 141 (484)
.++|.+||+||+.+|||++|++.+.
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999987765
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=73.14 E-value=3.8 Score=44.95 Aligned_cols=43 Identities=28% Similarity=0.229 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccchhhh
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLI-QGHSVKRQ 160 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralraLkglVrLQAlv-RG~~vRrq 160 (484)
+--.||+.||.-||+|.||...+......-+|+|- -|++=+-+
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ~k 58 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQAK 58 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccchHH
Confidence 45679999999999999999988766677788873 45444333
No 19
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=57.86 E-value=16 Score=44.93 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=46.5
Q ss_pred HHHHHHhhhhhhHHHHHHH----H----HHHHHHhhhcccchhhhhh----hhHHhhhhHHHHHHHHHHHHHhhhh
Q 011478 124 IKIQTAFRGYLARRALRAL----R----GLVRLKSLIQGHSVKRQAT----TTLRCMQTLARVQSQIRARRIRMSE 187 (484)
Q Consensus 124 I~IQsafRGylARralraL----k----glVrLQAlvRG~~vRrqa~----~tlr~mqAavrIQs~vR~rr~R~~~ 187 (484)
.+||+..|||..|-.++.. + -++.+|+++||.++ ++ .......-+|.+|+..|+...|...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 3459999999999988872 2 26778999999986 22 1123446689999999999988764
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=57.82 E-value=43 Score=42.91 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHH----HHHHHHHHhhhcccchhhh
Q 011478 121 IAVIKIQTAFRGYLARRALRA----LRGLVRLKSLIQGHSVKRQ 160 (484)
Q Consensus 121 ~AAI~IQsafRGylARralra----LkglVrLQAlvRG~~vRrq 160 (484)
.-.+.+|+++||||+|+.|.. +.+|..||.=+|-++..|.
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346778999999999988875 5556777776665544443
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=57.48 E-value=7.9 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH
Q 011478 122 AVIKIQTAFRGYLARRALRALRG 144 (484)
Q Consensus 122 AAI~IQsafRGylARralraLkg 144 (484)
=|.+||.|||.|++||.|..+|.
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999988665
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.26 E-value=26 Score=44.81 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=36.1
Q ss_pred HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHh
Q 011478 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184 (484)
Q Consensus 145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R 184 (484)
|+.|||.+||+++|+.+..-...+.++..||..+|.+...
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l 815 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL 815 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999998888999999999999998543
No 23
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=40.02 E-value=26 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHH
Q 011478 119 EEIAVIKIQTAFRGYLARRAL 139 (484)
Q Consensus 119 ee~AAI~IQsafRGylARral 139 (484)
.--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999998863
No 24
>PF15157 IQ-like: IQ-like
Probab=27.64 E-value=45 Score=29.28 Aligned_cols=19 Identities=47% Similarity=0.606 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhhHHH
Q 011478 120 EIAVIKIQTAFRGYLARRA 138 (484)
Q Consensus 120 e~AAI~IQsafRGylARra 138 (484)
|.-+..||.+||-|++|..
T Consensus 47 eskvkiiqrawre~lq~qd 65 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQD 65 (97)
T ss_pred hHHHHHHHHHHHHHHHhcC
Confidence 4457789999999999865
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=22.41 E-value=84 Score=37.07 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHH
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralra 141 (484)
....||+.||.+.|||.+||.|+-
T Consensus 941 nkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999984
No 26
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=22.08 E-value=26 Score=32.48 Aligned_cols=7 Identities=71% Similarity=2.637 Sum_probs=5.4
Q ss_pred CCCCchhh
Q 011478 272 HWGWSWLE 279 (484)
Q Consensus 272 ~wgWsWLE 279 (484)
=||| |||
T Consensus 53 FWGW-Wme 59 (127)
T PRK10984 53 FWGW-WME 59 (127)
T ss_pred hhhh-hee
Confidence 4999 775
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=21.53 E-value=2e+02 Score=36.16 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHH-hhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHh
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLK-SLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralra-LkglVrLQ-AlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R 184 (484)
....++++||..+|.+.-|..++. +.-+..|| .+.++..++-.. .....+.+.+.+|+.+|+...+
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~ 858 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAK 858 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 456789999999999999999998 55588888 555555555422 2233455666666666555433
Done!