Query 011478
Match_columns 484
No_of_seqs 304 out of 589
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 1.3E-09 4.6E-14 83.6 5.1 53 118-171 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 2.7E-08 9.2E-13 73.5 4.1 42 120-161 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.4 2.5E-07 8.6E-12 106.3 8.0 67 120-187 768-835 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.4 1.8E-07 6E-12 107.6 6.5 69 117-186 813-882 (1080)
5 2l53_B CAM, voltage-gated sodi 98.0 2.6E-06 8.9E-11 58.9 2.5 24 117-140 3-26 (31)
6 2kxw_B Sodium channel protein 97.9 3.8E-06 1.3E-10 56.4 1.6 23 117-139 3-25 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.5 0.00011 3.7E-09 54.0 4.6 42 143-185 4-45 (48)
8 1wdc_A Scallop myosin; calcium 96.6 0.0024 8.1E-08 49.7 4.6 22 120-141 6-27 (64)
9 2ix7_C Myosin-5A; contractIle 96.5 0.0023 7.9E-08 48.6 4.3 41 143-186 6-46 (58)
10 2bl0_A Major plasmodial myosin 96.4 0.0022 7.4E-08 49.9 3.6 21 121-141 5-25 (63)
11 1kk8_A Myosin heavy chain, str 96.1 0.003 1E-07 71.2 4.4 42 120-161 779-824 (837)
12 1wdc_A Scallop myosin; calcium 96.0 0.0061 2.1E-07 47.4 4.4 41 145-185 9-49 (64)
13 3gn4_A Myosin-VI; unconvention 96.0 0.0054 1.8E-07 56.1 4.6 34 119-152 44-78 (148)
14 2bl0_A Major plasmodial myosin 96.0 0.0053 1.8E-07 47.7 3.7 42 145-186 7-48 (63)
15 1i84_S Smooth muscle myosin he 94.9 0.044 1.5E-06 63.6 8.2 41 121-161 793-837 (1184)
16 4dck_A Sodium channel protein 92.5 0.072 2.5E-06 49.5 3.3 25 117-141 127-151 (168)
17 1kk8_A Myosin heavy chain, str 90.7 0.26 8.8E-06 55.7 6.0 41 145-185 782-822 (837)
18 1w7j_A Myosin VA; motor protei 86.1 0.4 1.4E-05 53.8 3.6 25 120-144 768-792 (795)
19 1i84_S Smooth muscle myosin he 85.9 0.72 2.5E-05 53.6 5.7 44 142-185 791-835 (1184)
20 4anj_A Unconventional myosin-V 71.7 2.6 8.8E-05 48.9 4.1 36 119-155 774-810 (1052)
21 3gn4_A Myosin-VI; unconvention 47.5 18 0.00061 33.0 4.3 29 144-175 47-75 (148)
22 3dvk_B Voltage-dependent R-typ 30.8 19 0.00066 23.2 1.3 19 119-137 5-23 (23)
23 3bxl_B CAM, voltage-dependent 25.6 38 0.0013 22.4 2.0 18 121-138 3-20 (26)
24 3dve_B Voltage-dependent N-typ 24.6 20 0.00067 23.2 0.5 18 120-137 5-22 (23)
25 2f3y_B Voltage-dependent L-typ 23.1 41 0.0014 22.3 1.7 19 122-140 4-22 (26)
26 4anj_A Unconventional myosin-V 22.5 62 0.0021 37.6 4.3 41 142-185 774-814 (1052)
27 2be6_D Voltage-dependent L-typ 21.4 55 0.0019 23.3 2.3 20 120-139 11-30 (37)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.89 E-value=1.3e-09 Score=83.63 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHhhhcccchhhhhhhhHHhhhhH
Q 011478 118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTL 171 (484)
Q Consensus 118 ree~AAI~IQsafRGylARralraLk-glVrLQAlvRG~~vRrqa~~tlr~mqAa 171 (484)
+.+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence 56789999999999999999999966 69999999999999999843 4444443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.7e-08 Score=73.48 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHhhhcccchhhhh
Q 011478 120 EIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 120 e~AAI~IQsafRGylARralraLk---glVrLQAlvRG~~vRrqa 161 (484)
..|||.||+.||||++|+.|..++ ..+.||+.+||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 358999999999999999998844 688889999999888865
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.43 E-value=2.5e-07 Score=106.35 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhhh
Q 011478 120 EIAVIKIQTAFRGYLARRALRAL-RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSE 187 (484)
Q Consensus 120 e~AAI~IQsafRGylARralraL-kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~~ 187 (484)
..||+.||++||||++|+.|+.+ .+++.||+.+||+++|+.+. .++...|++.||+.+|++.+|+.-
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHH
Confidence 57999999999999999999995 45899999999999999984 577889999999999999998753
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.42 E-value=1.8e-07 Score=107.60 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478 117 SQEEIAVIKIQTAFRGYLARRALRAL-RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARralraL-kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~ 186 (484)
.+++.||++||+.||||++|+.|..+ .+++.||+.+||+++|+++.. ++...+++.||+.+|+...|..
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999984 458999999999999998843 4555667777777777666654
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=58.90 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHH
Q 011478 117 SQEEIAVIKIQTAFRGYLARRALR 140 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARralr 140 (484)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998764
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.88 E-value=3.8e-06 Score=56.41 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHH
Q 011478 117 SQEEIAVIKIQTAFRGYLARRAL 139 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARral 139 (484)
.+||.||+.||.|||+||.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999998753
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00011 Score=53.96 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 143 kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
+.++.||+.+||+++|+++. .++...+++.||+.+||..+|.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~-~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVN-DEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence 46899999999999999994 4666779999999999998875
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.55 E-value=0.0024 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH
Q 011478 120 EIAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 120 e~AAI~IQsafRGylARralra 141 (484)
...++.||+..|||++|+.|..
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k 27 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKK 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777766665
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.52 E-value=0.0023 Score=48.65 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478 143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (484)
Q Consensus 143 kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~ 186 (484)
..++.||+.+||+++|+.+. +...+++.||+.+||+.+|..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~---~~r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYL---CMQRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999994 344699999999999988874
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.42 E-value=0.0022 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHH
Q 011478 121 IAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 121 ~AAI~IQsafRGylARralra 141 (484)
..++.||+..|||++|+.|..
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k 25 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQ 25 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.15 E-value=0.003 Score=71.16 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHhhhcccchhhhh
Q 011478 120 EIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 120 e~AAI~IQsafRGylARralraL----kglVrLQAlvRG~~vRrqa 161 (484)
..+|+.||+++|||++|+.|+.+ ..++.||..+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34789999999999999999875 3577788888888877765
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.04 E-value=0.0061 Score=47.40 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
++.||+.+||+++|+.+...+....|+..||..+|+...++
T Consensus 9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999888888889999999999987765
No 13
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.02 E-value=0.0054 Score=56.06 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhh
Q 011478 119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI 152 (484)
Q Consensus 119 ee~AAI~IQsafRGylARralra-LkglVrLQAlv 152 (484)
...|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56789999999999999999998 79999998874
No 14
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=95.96 E-value=0.0053 Score=47.65 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (484)
Q Consensus 145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~ 186 (484)
++.||+.+||+++|+.+...+....|+..||..+|+...++.
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999998888888899999999999887663
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.92 E-value=0.044 Score=63.58 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHH----HHHHHHHhhhcccchhhhh
Q 011478 121 IAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA 161 (484)
Q Consensus 121 ~AAI~IQsafRGylARralraL----kglVrLQAlvRG~~vRrqa 161 (484)
.+|+.||+.||||++|+.|..+ .+++.||..+||++.+|.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999999999885 4689999999999998764
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=92.47 E-value=0.072 Score=49.51 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHH
Q 011478 117 SQEEIAVIKIQTAFRGYLARRALRA 141 (484)
Q Consensus 117 ~ree~AAI~IQsafRGylARralra 141 (484)
..|+.||+.||.|||.|+.|+.++.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999988775
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=90.73 E-value=0.26 Score=55.71 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
++.||+.+||+++|+++...+....|++.||..+|++..|+
T Consensus 782 ~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r 822 (837)
T 1kk8_A 782 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 822 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68899999999999999766666789999999999998775
No 18
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=86.11 E-value=0.4 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH
Q 011478 120 EIAVIKIQTAFRGYLARRALRALRG 144 (484)
Q Consensus 120 e~AAI~IQsafRGylARralraLkg 144 (484)
..+|+.||++||||++|+.|+.++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999998664
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.93 E-value=0.72 Score=53.56 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=37.9
Q ss_pred HHH-HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 142 LRG-LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 142 Lkg-lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
|.. ++.||+.+||+++|+.+...+....|++.||+.+|++..++
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k 835 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX 835 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 68999999999999999876667789999999999998775
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=71.69 E-value=2.6 Score=48.87 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHhhhccc
Q 011478 119 EEIAVIKIQTAFRGYLARRALRALRG-LVRLKSLIQGH 155 (484)
Q Consensus 119 ee~AAI~IQsafRGylARralraLkg-lVrLQAlvRG~ 155 (484)
.+.+|+.||. +|||++|+.|+.++. .+.+|.+-|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~ 810 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKI 810 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777775 689999988877443 45555544443
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=47.48 E-value=18 Score=32.97 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHhhhcccchhhhhhhhHHhhhhHHHHH
Q 011478 144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQ 175 (484)
Q Consensus 144 glVrLQAlvRG~~vRrqa~~tlr~mqAavrIQ 175 (484)
.++++|..|||+++|++..- ++.+++++-
T Consensus 47 ~~i~iQktvR~~L~rkkhkP---Ri~g~~kv~ 75 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKP---RIDGLVKVG 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhh---HHHHHHHHH
Confidence 47888999999999998853 344444433
No 22
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=30.80 E-value=19 Score=23.21 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhhHH...
Q 011478 119 EEIAVIKIQTAFRGYLARR... 137 (484)
Q Consensus 119 ee~AAI~IQsafRGylARr... 137 (484)
+--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 3468999999999887763
No 23
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=25.59 E-value=38 Score=22.41 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhhHHH
Q 011478 121 IAVIKIQTAFRGYLARRA 138 (484)
Q Consensus 121 ~AAI~IQsafRGylARra 138 (484)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999988875
No 24
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=24.65 E-value=20 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhhHH
Q 011478 120 EIAVIKIQTAFRGYLARR 137 (484)
Q Consensus 120 e~AAI~IQsafRGylARr 137 (484)
--||..||-.||-+..|+
T Consensus 5 iYAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 5 VYAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 468999999999887664
No 25
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=23.14 E-value=41 Score=22.25 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 011478 122 AVIKIQTAFRGYLARRALR 140 (484)
Q Consensus 122 AAI~IQsafRGylARralr 140 (484)
|-..||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999887643
No 26
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=22.51 E-value=62 Score=37.60 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478 142 LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (484)
Q Consensus 142 LkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~ 185 (484)
+..++.+|..+||.++|+++. +-..+++.||...|.++.|.
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~---k~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWK---KVQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556666766789999999984 34467777777666666554
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=21.41 E-value=55 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 011478 120 EIAVIKIQTAFRGYLARRAL 139 (484)
Q Consensus 120 e~AAI~IQsafRGylARral 139 (484)
=-|-..||-.||-|..|+.-
T Consensus 11 fYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 11 FYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999998874
Done!