Query 011479
Match_columns 484
No_of_seqs 51 out of 53
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 08:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kbe_A Superoxide dismutase [C 12.5 2E+02 0.0068 25.5 4.2 46 434-481 6-52 (157)
2 1xez_A Hemolysin, cytolysin; p 10.0 1E+02 0.0036 33.8 1.8 19 460-478 212-230 (721)
3 3l51_B Structural maintenance 7.8 1.5E+02 0.0052 25.5 1.6 23 354-376 137-161 (166)
4 4a7u_A Superoxide dismutase [C 7.5 2.6E+02 0.0088 24.5 2.9 19 462-480 33-52 (153)
5 3l9y_A Cu-znsod1, superoxide d 7.1 2.4E+02 0.0083 24.7 2.6 20 462-481 32-52 (154)
6 1f1g_A Cuznsod, copper-zinc su 6.4 3.9E+02 0.013 23.4 3.5 38 443-480 14-53 (154)
7 2e47_A EA4, TIME interVal meas 6.3 2.4E+02 0.008 25.0 2.1 45 434-481 12-57 (156)
8 1xso_A Copper,zinc superoxide 6.2 3.2E+02 0.011 23.9 2.8 36 443-481 13-51 (150)
9 1xtm_B Hypothetical superoxide 6.1 4.8E+02 0.016 23.4 4.0 42 434-481 25-72 (175)
10 3f7l_A Copper,zinc superoxide 6.1 2.3E+02 0.0078 24.9 1.9 9 472-480 42-50 (152)
No 1
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A
Probab=12.48 E-value=2e+02 Score=25.47 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=24.4
Q ss_pred eeeccccceeecceEeeccccCCCCccEEEeccCCCCC-ccccccCCCC
Q 011479 434 AFMNSNVQGVNNSIVFHSSCSHHDPGVHLSLSRKPSGN-GFHVKDKGNG 481 (484)
Q Consensus 434 ayvNSNVQ~VNNSil~~SSc~~~DPGVHl~ls~k~~g~-G~Hvkd~g~g 481 (484)
++++.+ .|.-.|.|...-....==|.+.|...+-|. ||||-+.||-
T Consensus 6 avl~g~--~V~G~v~f~q~~~g~~v~v~~~l~GL~pG~hgfHIHe~Gd~ 52 (157)
T 3kbe_A 6 AVLRGE--TVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDS 52 (157)
T ss_dssp EEEBCS--SCEEEEEEECSSTTSCCEEEEEEESCCSSCEEEEEESCCCC
T ss_pred EEEeCC--CEEEEEEEEEeCCCCeEEEEEEEECCCCCcccEEEeecCcc
Confidence 344443 255556665432111112444556555566 8999888764
No 2
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A
Probab=10.05 E-value=1e+02 Score=33.84 Aligned_cols=19 Identities=37% Similarity=0.777 Sum_probs=17.4
Q ss_pred cEEEeccCCCCCccccccC
Q 011479 460 VHLSLSRKPSGNGFHVKDK 478 (484)
Q Consensus 460 VHl~ls~k~~g~G~Hvkd~ 478 (484)
|++.|++...|.||||-|.
T Consensus 212 VRislDdds~GaGIhLnd~ 230 (721)
T 1xez_A 212 VRISLDDDSTGAGIHLNDQ 230 (721)
T ss_dssp EEEEECTTTCCCEEECCSS
T ss_pred EEEEEcCCCCCccEEEhhh
Confidence 8999999988999999884
No 3
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=7.76 E-value=1.5e+02 Score=25.54 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=17.0
Q ss_pred CccEEEEEecc--CcceeEEEecCC
Q 011479 354 VGMRVITIAGE--NKGAFMEVIRSP 376 (484)
Q Consensus 354 ~G~rVITLAGE--NKGAtMev~~s~ 376 (484)
.++++|||.|| +++-.|--+++.
T Consensus 137 ~~~r~VTldGdli~~~G~~tGG~~~ 161 (166)
T 3l51_B 137 RRWRVVTLQGQIIEQSGTMSGGLEH 161 (166)
T ss_dssp CBCCEEETTSCEECTTCCEEECCGG
T ss_pred CCcEEEECCCEEEeCCEEEECCCcc
Confidence 46899999998 666677666653
No 4
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ...
Probab=7.47 E-value=2.6e+02 Score=24.55 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=11.2
Q ss_pred EEeccCCCCC-ccccccCCC
Q 011479 462 LSLSRKPSGN-GFHVKDKGN 480 (484)
Q Consensus 462 l~ls~k~~g~-G~Hvkd~g~ 480 (484)
+.|...+-|. ||||-+.||
T Consensus 33 ~~i~GL~pG~hg~HIHe~Gd 52 (153)
T 4a7u_A 33 GSIKGLTEGLHGFHVHEFGD 52 (153)
T ss_dssp EEEESCCSEEEEEEEESCCC
T ss_pred EEEECCCCCcccEEEeecCc
Confidence 3444444444 788877776
No 5
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A
Probab=7.13 E-value=2.4e+02 Score=24.73 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=11.9
Q ss_pred EEeccCCCCC-ccccccCCCC
Q 011479 462 LSLSRKPSGN-GFHVKDKGNG 481 (484)
Q Consensus 462 l~ls~k~~g~-G~Hvkd~g~g 481 (484)
+.|...+.|. ||||-+.||-
T Consensus 32 ~~l~GL~pG~hg~HIHe~Gd~ 52 (154)
T 3l9y_A 32 GEVQGLTKGKHGFHVHEFGDN 52 (154)
T ss_dssp EEEESCCSEEEEEEEESCCCC
T ss_pred EEEECCCCCCccEEEEecCcC
Confidence 3444444454 8888887763
No 6
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A
Probab=6.36 E-value=3.9e+02 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=19.0
Q ss_pred eecceEeeccccCCCCccEEEeccCCC-CC-ccccccCCC
Q 011479 443 VNNSIVFHSSCSHHDPGVHLSLSRKPS-GN-GFHVKDKGN 480 (484)
Q Consensus 443 VNNSil~~SSc~~~DPGVHl~ls~k~~-g~-G~Hvkd~g~ 480 (484)
|.-.|.|...-....==|.+.|...+- |. ||||-+.||
T Consensus 14 v~G~v~f~q~~~~~~v~v~~~i~GL~p~G~hg~HIHe~Gd 53 (154)
T 1f1g_A 14 VSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGD 53 (154)
T ss_dssp CEEEEEEECSSTTSCEEEEEEEESCCSSCEEEEEEESCCC
T ss_pred cEEEEEEEEeCCCCCEEEEEEEeeCCCCCeEeEEEecCCC
Confidence 444555544211111123444555544 55 888888776
No 7
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A
Probab=6.31 E-value=2.4e+02 Score=24.97 Aligned_cols=45 Identities=27% Similarity=0.538 Sum_probs=24.4
Q ss_pred eeeccccceeecceEeeccccCCCCccEEEeccCCCCC-ccccccCCCC
Q 011479 434 AFMNSNVQGVNNSIVFHSSCSHHDPGVHLSLSRKPSGN-GFHVKDKGNG 481 (484)
Q Consensus 434 ayvNSNVQ~VNNSil~~SSc~~~DPGVHl~ls~k~~g~-G~Hvkd~g~g 481 (484)
++++.+ .|.-.|.| ..-....==|.+.|...+-|. ||||-+.||-
T Consensus 12 a~l~~~--~v~G~v~f-q~~~g~~v~v~~~i~GL~pG~hg~HIHe~Gd~ 57 (156)
T 2e47_A 12 AVLSTE--TIRGNITF-TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDL 57 (156)
T ss_dssp EEEECS--SCEEEEEE-EECGGGCEEEEEEEESSCSEEEEEEEESCCCC
T ss_pred EEEeCC--CeEEEEEE-EeCCCCcEEEEEEEEeCCCCcEEEEEeCCCcC
Confidence 445554 46666777 321111122444555555565 8999888864
No 8
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Probab=6.15 E-value=3.2e+02 Score=23.89 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=19.5
Q ss_pred eecceEeeccccCCCCccEE--EeccCCCCC-ccccccCCCC
Q 011479 443 VNNSIVFHSSCSHHDPGVHL--SLSRKPSGN-GFHVKDKGNG 481 (484)
Q Consensus 443 VNNSil~~SSc~~~DPGVHl--~ls~k~~g~-G~Hvkd~g~g 481 (484)
|.-.|.|... . +-+|.| .|...+-|. ||||-+.||-
T Consensus 13 v~G~v~f~q~-~--~~~v~v~~~i~GL~pG~hg~HIHe~Gd~ 51 (150)
T 1xso_A 13 VKGVVHFEQQ-D--EGAVSVEGKIEGLTDGLHGFHIHVFGDN 51 (150)
T ss_dssp CEEEEEEEES-T--TSCEEEEEEEESCCSEEEEEEEESCCCC
T ss_pred cEEEEEEEEc-C--CCcEEEEEEECCCCCCceeEEEecCCCC
Confidence 4455666543 1 113444 444444455 8898888763
No 9
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A
Probab=6.08 E-value=4.8e+02 Score=23.43 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=24.6
Q ss_pred eeeccccceeecceEeeccccCCCCccEE--Eec--cC-CCCC-ccccccCCCC
Q 011479 434 AFMNSNVQGVNNSIVFHSSCSHHDPGVHL--SLS--RK-PSGN-GFHVKDKGNG 481 (484)
Q Consensus 434 ayvNSNVQ~VNNSil~~SSc~~~DPGVHl--~ls--~k-~~g~-G~Hvkd~g~g 481 (484)
.+++.+=+.| -.|.|.. +-||.| .|. .. .-|. ||||-+.||-
T Consensus 25 ~l~~~~g~~v-G~v~f~q-----~~~v~v~~~i~~~GL~~pG~hg~HIHe~Gd~ 72 (175)
T 1xtm_B 25 QLVNREGKAV-GFIEIKE-----SDDEGLDIHISANSLRPGASLGFHIHEKGSC 72 (175)
T ss_dssp EEEETTCCEE-EEEEEEE-----CSSSSEEEEEEECSCCTTCEECEEEESSCCC
T ss_pred EEeCCCCCcE-EEEEEEe-----CCCEEEEEEEEcCCCCCCCcceEEEecCCcc
Confidence 3445443455 6666755 224544 455 43 4466 9999998864
No 10
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A
Probab=6.08 E-value=2.3e+02 Score=24.89 Aligned_cols=9 Identities=56% Similarity=1.176 Sum_probs=5.6
Q ss_pred ccccccCCC
Q 011479 472 GFHVKDKGN 480 (484)
Q Consensus 472 G~Hvkd~g~ 480 (484)
||||-+.||
T Consensus 42 gfHIHe~Gd 50 (152)
T 3f7l_A 42 GFHVHEFGD 50 (152)
T ss_dssp EEEEESCCC
T ss_pred cEEEeecCc
Confidence 666666555
Done!