Query 011479
Match_columns 484
No_of_seqs 51 out of 53
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 09:00:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrr1 b.34.5.1 (R:4-113) Rib 31.9 30 0.0022 27.7 5.0 25 355-379 16-43 (110)
2 d2gycs1 b.34.5.1 (S:3-101) Rib 18.9 41 0.003 26.4 3.4 19 355-373 5-23 (99)
3 d1ixma_ d.123.1.1 (A:) Sporula 10.6 20 0.0014 26.3 -0.7 8 474-481 137-144 (179)
4 d1xsoa_ b.1.8.1 (A:) Cu,Zn sup 7.7 57 0.0042 26.4 1.0 21 460-480 29-50 (150)
5 d1eqwa_ b.1.8.1 (A:) Cu,Zn sup 7.2 1.1E+02 0.0079 24.9 2.5 27 444-480 28-54 (155)
6 d1esoa_ b.1.8.1 (A:) Cu,Zn sup 7.0 75 0.0055 26.0 1.4 23 458-480 29-54 (154)
7 d1to4a_ b.1.8.1 (A:) Cu,Zn sup 6.9 67 0.0049 26.2 1.0 21 460-480 33-54 (156)
8 d1srda_ b.1.8.1 (A:) Cu,Zn sup 6.9 73 0.0053 25.8 1.2 21 460-480 31-52 (154)
9 d1cxla1 b.1.18.2 (A:497-583) C 6.6 79 0.0058 22.5 1.2 12 357-368 17-28 (87)
10 d1s98a_ b.124.1.1 (A:) Fe-S sc 6.4 71 0.0051 23.6 0.8 31 446-476 60-90 (97)
No 1
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=31.87 E-value=30 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=17.6
Q ss_pred ccEEEEEeccCccee---EEEecCCCCC
Q 011479 355 GMRVITIAGENKGAF---MEVIRSPLKH 379 (484)
Q Consensus 355 G~rVITLAGENKGAt---Mev~~s~kK~ 379 (484)
|..|+-|+|..+|-. ++|.....+-
T Consensus 16 GD~V~VisGkdKGk~G~Vl~V~~~~~~V 43 (110)
T d2zjrr1 16 GDTVIVLSGKHKGQTGKVLLALPRDQKV 43 (110)
T ss_dssp TSEEECCSSSSTTCEEEEEEEETTTTEE
T ss_pred CCEEEEeecCCCCcceEEEEEECCCCEE
Confidence 779999999998855 5555444433
No 2
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=18.95 E-value=41 Score=26.40 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=14.4
Q ss_pred ccEEEEEeccCcceeEEEe
Q 011479 355 GMRVITIAGENKGAFMEVI 373 (484)
Q Consensus 355 G~rVITLAGENKGAtMev~ 373 (484)
|-.|+-|+|..+|-+=+|.
T Consensus 5 GD~V~VisGkdKGK~G~V~ 23 (99)
T d2gycs1 5 DDEVIVLTGKDKGKRGKVK 23 (99)
T ss_dssp TSEEECSSSTTTTCEEEEE
T ss_pred CCEEEEeeCCCCCCceEEE
Confidence 5689999999998664443
No 3
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=10.63 E-value=20 Score=26.29 Aligned_cols=8 Identities=13% Similarity=-0.110 Sum_probs=3.9
Q ss_pred ccccCCCC
Q 011479 474 HVKDKGNG 481 (484)
Q Consensus 474 Hvkd~g~g 481 (484)
.|+|.|.|
T Consensus 137 ~v~D~G~g 144 (179)
T d1ixma_ 137 YLDFHGAF 144 (179)
T ss_dssp EEEEESCB
T ss_pred EEEeCCCC
Confidence 45555544
No 4
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=7.74 E-value=57 Score=26.41 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=12.9
Q ss_pred cEEEeccCCCCC-ccccccCCC
Q 011479 460 VHLSLSRKPSGN-GFHVKDKGN 480 (484)
Q Consensus 460 VHl~ls~k~~g~-G~Hvkd~g~ 480 (484)
|++.|+..+.|. ||||-+.||
T Consensus 29 V~~~l~GL~pG~Hg~HIHe~Gd 50 (150)
T d1xsoa_ 29 VEGKIEGLTDGLHGFHIHVFGD 50 (150)
T ss_dssp EEEEEESCCSEEEEEEEESCCC
T ss_pred EEEEEccCCCcceeEEEecCCC
Confidence 344555555555 788877765
No 5
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]}
Probab=7.19 E-value=1.1e+02 Score=24.89 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=14.1
Q ss_pred ecceEeeccccCCCCccEEEeccCCCCCccccccCCC
Q 011479 444 NNSIVFHSSCSHHDPGVHLSLSRKPSGNGFHVKDKGN 480 (484)
Q Consensus 444 NNSil~~SSc~~~DPGVHl~ls~k~~g~G~Hvkd~g~ 480 (484)
++.+++......=-||.| ||||-++||
T Consensus 28 ~~gv~I~~~l~GL~pg~H----------g~HIHe~Gd 54 (155)
T d1eqwa_ 28 PYGLLFTPHLNGLTPGIH----------GFHVHTNPS 54 (155)
T ss_dssp TTEEEEEEEECSCCSEEE----------CEEEESSSC
T ss_pred CCCEEEEEEEeCCCCCce----------eEEEccCCC
Confidence 444554444444444433 677776654
No 6
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]}
Probab=7.04 E-value=75 Score=25.95 Aligned_cols=23 Identities=39% Similarity=0.821 Sum_probs=12.2
Q ss_pred CccEEEe--ccCCCCC-ccccccCCC
Q 011479 458 PGVHLSL--SRKPSGN-GFHVKDKGN 480 (484)
Q Consensus 458 PGVHl~l--s~k~~g~-G~Hvkd~g~ 480 (484)
-||+|.+ ...+.|. ||||-++|+
T Consensus 29 ~gv~v~~~l~GL~pG~hg~HIHe~Gd 54 (154)
T d1esoa_ 29 KGLEFSPDLKALPPGEHGFHIHAKGS 54 (154)
T ss_dssp TEEEEEEEECSCCSEEECEEEESSSC
T ss_pred CCEEEEEEEeCCCCCcceEEEcCCCc
Confidence 3444433 3333344 778877664
No 7
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=6.88 E-value=67 Score=26.21 Aligned_cols=21 Identities=43% Similarity=0.781 Sum_probs=12.8
Q ss_pred cEEEeccCCCCC-ccccccCCC
Q 011479 460 VHLSLSRKPSGN-GFHVKDKGN 480 (484)
Q Consensus 460 VHl~ls~k~~g~-G~Hvkd~g~ 480 (484)
|++.|...+.|. ||||-++||
T Consensus 33 V~~~l~GL~pG~hg~HIHe~Gd 54 (156)
T d1to4a_ 33 VHAEFSGLKAGKHGFHVHEFGD 54 (156)
T ss_dssp EEEEEESCCSEEEEEEEESCCC
T ss_pred EEEEEccCCCcceeeEEcCCCc
Confidence 334455555555 788877765
No 8
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=6.88 E-value=73 Score=25.81 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=12.3
Q ss_pred cEEEeccCCCCC-ccccccCCC
Q 011479 460 VHLSLSRKPSGN-GFHVKDKGN 480 (484)
Q Consensus 460 VHl~ls~k~~g~-G~Hvkd~g~ 480 (484)
|.+.|...+.|. ||||-++||
T Consensus 31 v~v~l~GL~pG~hg~HIHe~Gd 52 (154)
T d1srda_ 31 VNVRISGLAPGKHGFHLHEFGD 52 (154)
T ss_dssp EEEEEESCCSEECCEEEESCCC
T ss_pred EEEEEecCCCCceeEEEecCCc
Confidence 344445555565 777777665
No 9
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]}
Probab=6.62 E-value=79 Score=22.46 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=10.1
Q ss_pred EEEEEeccCcce
Q 011479 357 RVITIAGENKGA 368 (484)
Q Consensus 357 rVITLAGENKGA 368 (484)
..|||.|+|-|.
T Consensus 17 t~VTI~G~~F~~ 28 (87)
T d1cxla1 17 VTITIDGRGFGS 28 (87)
T ss_dssp CEEEEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 578999999874
No 10
>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=71 Score=23.62 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=26.2
Q ss_pred ceEeeccccCCCCccEEEeccCCCCCccccc
Q 011479 446 SIVFHSSCSHHDPGVHLSLSRKPSGNGFHVK 476 (484)
Q Consensus 446 Sil~~SSc~~~DPGVHl~ls~k~~g~G~Hvk 476 (484)
.|+++..+...=-|..|++.+...|+||+++
T Consensus 60 ~i~id~~s~~~L~G~~IDy~~~~~~~gF~f~ 90 (97)
T d1s98a_ 60 KVVVDGKSMQFLDGTQLDFVKEGLNEGFKFT 90 (97)
T ss_dssp EEEEEGGGHHHHTTCEEEEECSSTTCEEEEE
T ss_pred EEEEeHHHHHHhCCCEEEEeecCCcCceEEE
Confidence 3677777777778999999999999999985
Done!