BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011480
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 8/374 (2%)
Query: 37 SKQTLNEFAKELRA---FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAA 92
+++ + LRA + + + GD G+ + + L +++S +T A
Sbjct: 37 TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEA 96
Query: 93 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAK 151
G L+S L+ L+LS NP+GD G++ LC+ L+D +E+LQL L +
Sbjct: 97 GCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCE 156
Query: 152 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXX 210
+A +L+ L+ L ++NN I +G L + L +++ + +L
Sbjct: 157 PLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 216
Query: 211 XXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 270
SLREL L N +GD GI L GL S +L L + I+A G + +
Sbjct: 217 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 276
Query: 271 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDN 329
+ ++L ++L N +GDEGA + ++L Q + ++ + ++ + ++ +L N
Sbjct: 277 QAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQN 336
Query: 330 SVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTI 388
+ L L+ N +G G + L + L G + L LG C++ SG +A +L N ++
Sbjct: 337 KHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSL 396
Query: 389 SILDLRANGLRDEG 402
LDL N + D G
Sbjct: 397 RELDLSNNCVGDPG 410
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 172/395 (43%), Gaps = 6/395 (1%)
Query: 71 ESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK-CLCDIL 129
E L Q E V G+T K L++N +L L L N +GD GV L +
Sbjct: 18 ELLPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQ 77
Query: 130 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 189
+++L L + L + G + L++ LR L L++N + +G L E LL+
Sbjct: 78 SPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQ 137
Query: 190 T-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 248
+ L ++L+EL + N IG+ G R L GL+ +L
Sbjct: 138 CHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQL 197
Query: 249 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG-AEKIADALKQNRTITTI 307
L + N ++ + + + SL ++L N +GD G AE L + T+
Sbjct: 198 ETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTL 257
Query: 308 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLG 366
L +I + G + RVL+ + L LA N +G +GA+ L E L G + +L +
Sbjct: 258 WLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVK 317
Query: 367 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426
C + A+ + V+ ML N + L L +N L D G + L Q+ L + L E
Sbjct: 318 SCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCE 377
Query: 427 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 461
+ + G ++A L AN ++ L+L+NN + G
Sbjct: 378 VTNSGCSSLASLLLANR--SLRELDLSNNCVGDPG 410
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 10/319 (3%)
Query: 46 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSN 104
+ L + +S GD GL L E L Q E++ +TAA + VL++
Sbjct: 106 RSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRAT 165
Query: 105 IALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSIL 163
ALK L +S N IG+ G + L L D+A +E L+L + L K + ++ + + L
Sbjct: 166 RALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASL 225
Query: 164 RVLELNNNMIDYSGFTSLAEALLEN-STIRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 222
R L+L +N + +G L LL S +++L ++L+EL
Sbjct: 226 RELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKEL 285
Query: 223 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 282
L GN +GDEG R L L +L L + + S++A HV+ + K LL + L
Sbjct: 286 SLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLS 345
Query: 283 MNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 341
N +GD G +++ AL Q T+ + LG + + G S++A +L N + LDL+ N
Sbjct: 346 SNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNC 405
Query: 342 IGADGAKALSEVLKFHGNI 360
+G G VL+ G++
Sbjct: 406 VGDPG------VLQLLGSL 418
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 3/272 (1%)
Query: 32 KLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGIT 90
+L S + L + RA + +S + G+ G L + L + E + G+T
Sbjct: 149 RLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLT 208
Query: 91 AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEG 149
A K G++ S +L+ L+L N +GD G+ LC L+ A ++ L L D+ G
Sbjct: 209 PANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASG 268
Query: 150 AKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXX 208
+ + +L+ L+ L L N + G L E+LL+ + SL
Sbjct: 269 CRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQH 328
Query: 209 XXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268
K L EL L N +GD GI+ L LS L VL +G+ ++ G +A
Sbjct: 329 VSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLAS 388
Query: 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 300
+ +SL ++L N +GD G ++ +L+Q
Sbjct: 389 LLLANRSLRELDLSNNCVGDPGVLQLLGSLEQ 420
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 7/368 (1%)
Query: 50 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 107
A + + + GD G+ + + L N T +++S G+T AG G+L+S L
Sbjct: 53 ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 111
Query: 108 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 166
+ L+L+ NP+GD G+K LC+ L D +E+LQL +L + +A +L+ + + L
Sbjct: 112 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 171
Query: 167 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 225
L+NN + G L + L +++ + SL SL+EL L
Sbjct: 172 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 231
Query: 226 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 285
N +G+ GI AL GL KL L + I+A+G + ++ +SL ++L N+
Sbjct: 232 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 291
Query: 286 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 344
+ DEGA + ++ L+ + ++ + ++ + VL + + L ++ NP+G
Sbjct: 292 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 351
Query: 345 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 403
+G + L + L + L LG C + SG +A++L N ++ LDL N + G
Sbjct: 352 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 411
Query: 404 KCLAQSFK 411
L +S K
Sbjct: 412 LQLLESLK 419
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 4/314 (1%)
Query: 46 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSN 104
+ L + ++ GD GL L E L Q E++ +TA + VL+
Sbjct: 106 RSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVK 165
Query: 105 IALKTLNLSGNPIGDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSIL 163
K L LS N + + GV+ LC L D+A +E L+L + + K + +++ + + L
Sbjct: 166 ADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASL 225
Query: 164 RVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 222
+ L+L++N + +G +L LL S +R+L +SL+EL
Sbjct: 226 QELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKEL 285
Query: 223 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 282
L N + DEG R L L +L L I S++A + + +SLL + +
Sbjct: 286 SLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMS 345
Query: 283 MNDIGDEGAEKIADALKQNRTI-TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 341
N +GDEG +++ AL Q T+ + LG ++ + G S++A VL N + LDL+ N
Sbjct: 346 SNPLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNC 405
Query: 342 IGADGAKALSEVLK 355
+G G L E LK
Sbjct: 406 MGGPGVLQLLESLK 419
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 9/409 (2%)
Query: 53 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 112
S+D+ D E L Q E V G+T K +Q+N AL L+L
Sbjct: 3 SLDIQCEQLSD---ARWTELLPLIQQYEVVRLDDCGLTEVRCKDISSAVQANPALTELSL 59
Query: 113 SGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 171
N +GD GV + L + +++L L + L + G + +L++ S LR L LN+N
Sbjct: 60 RTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN 119
Query: 172 MIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIG 230
+ +G L E L + + L +EL L N +
Sbjct: 120 PMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLH 179
Query: 231 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 290
+ G+R L GL +L L + N I+A + + + + SL ++L N +G+ G
Sbjct: 180 EPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAG 239
Query: 291 AEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 349
+ L + + T+ L +I ++G + RVL+ + L LA N + +GA+
Sbjct: 240 IAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARL 299
Query: 350 LSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 408
L E L G + +L + C + A+ + +L + ++ L + +N L DEG + L +
Sbjct: 300 LCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCK 359
Query: 409 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 457
+ + L + L ++ + G ++A L AN ++ L+L+NN +
Sbjct: 360 ALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANR--SLRELDLSNNCM 406
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 3/253 (1%)
Query: 51 FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKT 109
F + +S + + G+ L + L + E + GITAA K V+ S +L+
Sbjct: 168 FKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQE 227
Query: 110 LNLSGNPIGDEGVKCLCD-ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLEL 168
L+LS N +G+ G+ LC +L+ + + L L D+ EG K + +L+ L+ L L
Sbjct: 228 LDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSL 287
Query: 169 NNNMIDYSGFTSLAEALLEN-STIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGN 227
+N + G L E+LLE + SL +SL EL + N
Sbjct: 288 ASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSN 347
Query: 228 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 287
+GDEG++ L LS L L +G+ ++ G +A + +SL ++L N +G
Sbjct: 348 PLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMG 407
Query: 288 DEGAEKIADALKQ 300
G ++ ++LKQ
Sbjct: 408 GPGVLQLLESLKQ 420
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 51 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 110
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 4 IQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 111 NLSGNPIGDEGVKCLCD-ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 169
NL N +GD GV C+ + + +++L L + L G ++ L+ L+ L L+
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 170 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 228
+N++ +G L E LL+ + L +EL + N
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 229 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 289 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 347
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 348 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 407 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 461
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 413
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 8/389 (2%)
Query: 50 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALK 108
A + +++ GD G+ + + L +++S +T AG L++ L+
Sbjct: 56 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115
Query: 109 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLE 167
L+LS N +GD G++ LC+ L+D +E+LQL L + +A +L+ + L
Sbjct: 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 175
Query: 168 LNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHG 226
++NN I+ +G L + L ++ + +L SLREL L
Sbjct: 176 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235
Query: 227 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 286
N +GD G+ L GL +L L I I+AKG + ++ +SL ++L N++
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 295
Query: 287 GDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345
GDEGA + + L+ + ++ + + + S + VL N + L ++ N +
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355
Query: 346 GAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 404
G + L + L G++ L L C + S +A L N+++ LDL N L D G
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415
Query: 405 CLAQSFK---VVNEALTSIDLAFNEIRDD 430
L +S + + E L D+ ++E +D
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 51 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 110
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 5 IQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 111 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 169
NL N +GD GV C+ L + +++L L + L G ++ L+ L+ L L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 170 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 228
+N++ +G L E LL+ + L +EL + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 229 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 289 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 347
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 348 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 407 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 461
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 8/389 (2%)
Query: 50 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALK 108
A + +++ GD G+ + + L +++S +T AG L++ L+
Sbjct: 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 109 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLE 167
L+LS N +GD G++ LC+ L+D +E+LQL L + +A +L+ + L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 168 LNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHG 226
++NN I+ +G L + L ++ + +L SLREL L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 227 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 286
N +GD G+ L GL +L L I I+AKG + ++ +SL ++L N++
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Query: 287 GDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345
GDEGA + + L+ + ++ + + + S + VL N + L ++ N +
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
Query: 346 GAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 404
G + L + L G++ L L C + S +A L N+++ LDL N L D G
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416
Query: 405 CLAQSFK---VVNEALTSIDLAFNEIRDD 430
L +S + + E L D+ ++E +D
Sbjct: 417 QLVESVRQPGCLLEQLVLYDIYWSEEMED 445
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 220 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 279
R+L L NS+G E + L L + ++ L + NN ++A G + E + S+ +
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 280 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 339
+L +GDEG E +A L +NR + +++ N A A+AR +++ + L L +
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 340 NPIGADGAKALSEV 353
N + ++G + L ++
Sbjct: 249 NELSSEGRQVLRDL 262
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQS 103
A+ L + ++++G +A LG + A +EV+ A+ + AG++ V
Sbjct: 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-- 125
Query: 104 NIALKTLNLSGNPIGDEGVKCLCDILV-DNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 162
+ + L L N +G E K L D+L+ D + L+LS+ L G + E L N+
Sbjct: 126 -LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184
Query: 163 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLREL 222
+ L L + + G LA L N ++ L+ SL L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244
Query: 223 HLHGNSIGDEGIRAL 237
HL+ N + EG + L
Sbjct: 245 HLYFNELSSEGRQVL 259
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 335 LDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 393
L L N +G + K L ++L I TL+L + A+G + + L N +++ L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 394 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 453
GL DEG + LA N L +++A+N D A+A A A E ++ L+L
Sbjct: 191 LHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGD--TAALALARAAREHPSLELLHLY 247
Query: 454 NNFLTKFGQSALTD 467
N L+ G+ L D
Sbjct: 248 FNELSSEGRQVLRD 261
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 61 FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 120
GDEGL LA L N+ +E++ A NG A + + +L+ L+L N + E
Sbjct: 195 LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254
Query: 121 GVKCLCDI 128
G + L D+
Sbjct: 255 GRQVLRDL 262
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 51 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 110
+++ +S G+ L E L N + +S G+ G++ L N L+ L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216
Query: 111 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 156
N++ N GD L ++ +E L L +L EG + + +L
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 218 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 268
S++E+ L GN+IG E R L ++S+K L+I S + + + E
Sbjct: 33 SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 328
+ C L + L N G E + D L ++ + + L N + + + IAR L++
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 329 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 378
+V + S+ N + K ++ + H ++T+K+ I G E +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 379 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 438
+ L Y + +LDL+ N G+ LA + K L + L + GA A+ A
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 267
Query: 439 LKANEDVAVTSLNLANN 455
E++ + +L L N
Sbjct: 268 FSKLENIGLQTLRLQYN 284
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 218 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 268
S++E+ L GN+IG E R L ++S+K L+I S + + + E
Sbjct: 32 SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 87
Query: 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 328
+ C L + L N G E + D L ++ + + L N + + + IAR L++
Sbjct: 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147
Query: 329 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 378
+V + S+ N + K ++ + H ++T+K+ I G E +
Sbjct: 148 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 207
Query: 379 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 438
+ L Y + +LDL+ N G+ LA + K L + L + GA A+ A
Sbjct: 208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 266
Query: 439 LKANEDVAVTSLNLANN 455
E++ + +L L N
Sbjct: 267 FSKLENIGLQTLRLQYN 283
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 18/261 (6%)
Query: 222 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWIN 280
L+L GN + + L+ L++ + VLD+G N S+K + + N S+ +N
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 281 LYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLA 338
L ND+G + ++++ L + +++L GNN+ SK + +A+ L + +TSLDL+
Sbjct: 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204
Query: 339 YNPIGADGAKALSEVL-KFHGNINTLKLGW-CQIGAS--GAEFVADMLRYNNTISI-LDL 393
N +G L+ + ++ +L L C G S + + D L++ T+ + D+
Sbjct: 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Query: 394 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA---QALKANEDVAVTSL 450
N + E K L +F + + + +D EI + I+ + L DV
Sbjct: 265 VKNXSK-EQCKALGAAFPNIQKIIL-VDKNGKEIHPSHSIPISNLIRELSGKADVP---- 318
Query: 451 NLANNFLTKFGQSALTDAKDL 471
+L N L F Q T+ +DL
Sbjct: 319 SLLNQCLI-FAQKHQTNIEDL 338
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 304 ITTIDLGGNNIHSKGASAIARVLKDNSV-ITSLDLAYNPIGADGAKALSEVLK-FHGNIN 361
+T++DL NN++S + + + +TSL+L+ N +G + L ++L N+
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 362 TLKL-GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 420
+L L G S E V + TI++LDL N + + Q+F + ++TS+
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 421 DLAFNEI---RDDGAFAIAQALKANEDVAVTSLNL-ANNFLTK 459
+L N++ D I A+ AN V SLNL NN +K
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPAN----VNSLNLRGNNLASK 182
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 374 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI---RDD 430
G+ V + + ++ LDL N L L Q+F ++TS++L+ N + D
Sbjct: 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69
Query: 431 GAFAIAQALKANEDVAVTSLNLANNFLT 458
I A+ AN VTSLNL+ NFL+
Sbjct: 70 ELVQILAAIPAN----VTSLNLSGNFLS 93
>pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half
Length = 185
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 117 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 176
I +K + L N V++ + D A A+AE+LK N+ L+ L + +N I S
Sbjct: 49 IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108
Query: 177 GFTSLAEALLENSTIRSLH 195
G +L EAL N+++ L
Sbjct: 109 GILALVEALQSNTSLIELR 127
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 48 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 107
++ FS V G D F LAE L N T + ++ +N I+ +GI A LQSN +L
Sbjct: 67 VKKFSIV---GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSL 123
Query: 108 KTLNL--SGNPIGD 119
L + P+G+
Sbjct: 124 IELRIDNQSQPLGN 137
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 342 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401
I KA +E LK + + + + A +A+ML+ NNT+ L++ +N +
Sbjct: 49 IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108
Query: 402 GAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 461
G L EAL S + + E+R D +Q L N ++ + ++ N L KFG
Sbjct: 109 GILALV-------EALQS-NTSLIELRIDNQ---SQPLGNNVEMEIANMLEKNTTLLKFG 157
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 429 DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468
D AFA+A+ LK N + SLN+ +NF++ G AL +A
Sbjct: 79 DPVAFALAEMLKVNN--TLKSLNVESNFISGSGILALVEA 116
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 330 SVITSLDLAYNPIGADGAKALSEV--LKFHG-NINTLKLGWCQIGASGAEFVADMLRYNN 386
SV +++D +YN IG+ K + F G N++++ L QI ++F ++ +
Sbjct: 402 SVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI----SKFPKELFSTGS 457
Query: 387 TISILDLRANGLRDEGAKCLA---QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 443
+S ++L N L + L ++FK LTSIDL FN++ ++ +A
Sbjct: 458 PLSSINLXGNXLTEIPKNSLKDENENFKNT-YLLTSIDLRFNKLT-----KLSDDFRATT 511
Query: 444 DVAVTSLNLANNFLTKFGQSAL 465
+ ++L+ N +KF L
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPL 533
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 57 SGRNFGDEGLFFLAESLGYNQTAEEVSFA-ANGITAAGIKAFDGVLQSN 104
SG + G E L+F + S+G+ A +++FA A G TAAG+ A ++ S+
Sbjct: 9 SGVDLGTENLYFQSMSVGFI-GAGQLAFALAKGFTAAGVLAAHKIMASS 56
>pdb|3VE7|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE7|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula Complexed With
Inhibitor Bmp
pdb|3VE9|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
pdb|3VE9|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Metallosphaera Sedula
Length = 215
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 329 NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 388
N VI SLD +PI + + K +G + +K+GW + G E V +++ + I
Sbjct: 2 NRVILSLD---SPIPEETLR------KLNGKVAGIKVGWPLLLNLGKEKVKELVGLVDGI 52
Query: 389 SILDLR 394
ILDL+
Sbjct: 53 KILDLK 58
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 4 PSRPSKPTAEGMNWSVGAGTNL-LSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFG 62
PSRP P GMN V AG + L G +G L + L+ ++D G +
Sbjct: 426 PSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITID--GVDVR 483
Query: 63 DEGLFFLAESLG--------YNQTAEE-VSFAANGITAAGIKAFDGVLQSNIALKTL-NL 112
D L FL +++ +N T EE +S GIT + A + + +KTL N
Sbjct: 484 DINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNG 543
Query: 113 SGNPIGDEGVK 123
+GD G +
Sbjct: 544 YNTLVGDRGTQ 554
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 244 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284
R LA+L + NNS S ++ + +C+SL+W++L N
Sbjct: 512 RLENLAILKLSNNSFSG----NIPAELGDCRSLIWLDLNTN 548
>pdb|1PGV|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Tropomodulin C-Terminal Domain
Length = 197
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 107 LKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 165
LK +N++ + E ++ L + ++ +E+ L++ + D A+ + EL++ + LRV
Sbjct: 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRV 102
Query: 166 LELNNNMIDYSGFTSLAEALLENSTI 191
L + +N + L + L +I
Sbjct: 103 LNVESNFLTPELLARLLRSTLVTQSI 128
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 244 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284
R LA+L + NNS S ++ + +C+SL+W++L N
Sbjct: 509 RLENLAILKLSNNSFSG----NIPAELGDCRSLIWLDLNTN 545
>pdb|1DHS|A Chain A, Crystal Structure Of The Nad Complex Of Human
Deoxyhypusine Synthase
Length = 361
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 378 VADMLRY---NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 434
+ + +RY +N + +L A G+ ++ KCLA ++ L L E+R++G
Sbjct: 104 IRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTY------LGEFSLRGKELRENGINR 157
Query: 435 IAQALKANED 444
I L NE+
Sbjct: 158 IGNLLVPNEN 167
>pdb|1RLZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its High Ionic
Strength, Low Ph Crystal Form
pdb|1ROZ|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1ROZ|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form
pdb|1RQD|A Chain A, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
pdb|1RQD|B Chain B, Deoxyhypusine Synthase Holoenzyme In Its Low Ionic
Strength, High Ph Crystal Form With The Inhibitor Gc7
Bound In The Active Site
Length = 369
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 378 VADMLRY---NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 434
+ + +RY +N + +L A G+ ++ KCLA ++ L L E+R++G
Sbjct: 112 IRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTY------LGEFSLRGKELRENGINR 165
Query: 435 IAQALKANED 444
I L NE+
Sbjct: 166 IGNLLVPNEN 175
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 41/232 (17%)
Query: 84 FAANGITAAGIK-AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS 142
+ +T + +K A + QS +K L+LSGNP+ L +E L LSS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSS 67
Query: 143 VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXX 202
L + L++ S LR L+LNNN + + LL +I +LH
Sbjct: 68 NVLYETLD------LESLSTLRTLDLNNNYV---------QELLVGPSIETLH------- 105
Query: 203 XXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 262
+ + ++L N I +R L G SR + LD+ N I
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKIT--MLRDLDEGCRSR---VQYLDLKLNEID--- 157
Query: 263 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 314
+ AE + +L +NL N I D + + LK T+DL N +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK------TLDLSSNKL 203
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 234 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 293
+R L +R +LA+LD G NSIS K + + + K L NL N++ +
Sbjct: 37 LRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVL---NLQHNELSQISDQT 92
Query: 294 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 340
+T +DL N+IH ++ K+ + LDL++N
Sbjct: 93 FVFC----TNLTELDLMSNSIHKIKSNPF----KNQKNLIKLDLSHN 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,659,035
Number of Sequences: 62578
Number of extensions: 489492
Number of successful extensions: 1720
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 75
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)