Query 011480
Match_columns 484
No_of_seqs 218 out of 3262
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 01:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 100.0 2.8E-28 6E-33 231.2 34.9 313 110-426 3-318 (319)
2 cd00116 LRR_RI Leucine-rich re 100.0 2.7E-27 5.9E-32 224.4 34.0 312 53-397 2-318 (319)
3 KOG1909 Ran GTPase-activating 100.0 1.7E-27 3.8E-32 209.6 21.9 295 152-468 83-380 (382)
4 KOG1909 Ran GTPase-activating 100.0 9.8E-27 2.1E-31 204.9 21.6 355 34-408 15-379 (382)
5 PLN00113 leucine-rich repeat r 99.9 1.2E-26 2.6E-31 251.4 13.2 164 43-230 182-345 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.5E-26 3.2E-31 250.8 13.1 361 42-459 86-466 (968)
7 KOG4194 Membrane glycoprotein 99.9 4.3E-28 9.4E-33 226.2 -1.5 362 49-468 78-439 (873)
8 KOG4194 Membrane glycoprotein 99.9 6.8E-26 1.5E-30 211.7 -2.2 377 28-467 85-462 (873)
9 KOG4308 LRR-containing protein 99.9 2.5E-21 5.4E-26 187.4 12.1 421 36-459 39-474 (478)
10 KOG0444 Cytoskeletal regulator 99.8 2.4E-23 5.1E-28 196.4 -5.7 339 29-426 35-373 (1255)
11 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.4E-26 185.2 -5.4 346 42-455 25-372 (1255)
12 KOG4308 LRR-containing protein 99.8 2.6E-19 5.7E-24 173.4 9.2 404 66-472 41-459 (478)
13 COG5238 RNA1 Ran GTPase-activa 99.7 5.6E-17 1.2E-21 138.6 16.1 260 34-312 15-282 (388)
14 COG5238 RNA1 Ran GTPase-activa 99.7 1.6E-16 3.4E-21 135.9 15.3 247 104-370 29-284 (388)
15 KOG0618 Serine/threonine phosp 99.7 2.1E-18 4.6E-23 170.2 -2.9 358 47-465 89-496 (1081)
16 KOG0472 Leucine-rich repeat pr 99.7 1.4E-18 3E-23 156.2 -4.8 381 34-465 53-548 (565)
17 KOG0618 Serine/threonine phosp 99.6 8.9E-18 1.9E-22 165.9 -4.0 367 47-467 44-474 (1081)
18 KOG4341 F-box protein containi 99.6 3.5E-15 7.5E-20 135.4 9.8 302 78-409 139-450 (483)
19 KOG4341 F-box protein containi 99.6 2.2E-14 4.7E-19 130.3 10.7 321 43-394 131-460 (483)
20 KOG0472 Leucine-rich repeat pr 99.5 4.5E-17 9.8E-22 146.6 -8.1 151 248-428 390-541 (565)
21 KOG2120 SCF ubiquitin ligase, 99.5 4.5E-14 9.8E-19 122.6 9.2 196 247-467 186-384 (419)
22 PLN03210 Resistant to P. syrin 99.5 2.2E-14 4.7E-19 156.6 8.0 185 43-260 552-739 (1153)
23 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.2E-18 138.4 12.3 263 51-406 203-465 (788)
24 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 140.5 10.1 279 64-438 190-468 (788)
25 PRK15370 E3 ubiquitin-protein 99.4 3.4E-13 7.4E-18 138.1 8.4 18 416-433 416-433 (754)
26 KOG2120 SCF ubiquitin ligase, 99.4 1.2E-12 2.6E-17 114.0 10.3 244 162-439 137-386 (419)
27 PRK15370 E3 ubiquitin-protein 99.4 9.1E-13 2E-17 135.0 9.7 214 133-404 220-433 (754)
28 PLN03210 Resistant to P. syrin 99.4 1.1E-12 2.3E-17 143.5 8.5 286 49-396 589-879 (1153)
29 KOG4237 Extracellular matrix p 99.3 4.6E-13 9.9E-18 120.9 -0.1 375 29-455 46-498 (498)
30 KOG3207 Beta-tubulin folding c 99.3 1.6E-12 3.4E-17 119.0 1.9 242 53-345 97-341 (505)
31 KOG3207 Beta-tubulin folding c 99.3 7.5E-13 1.6E-17 121.1 -0.5 233 33-287 105-339 (505)
32 KOG4237 Extracellular matrix p 99.1 9.1E-12 2E-16 112.6 -0.8 121 298-430 270-401 (498)
33 KOG0617 Ras suppressor protein 99.0 4.1E-12 8.8E-17 101.7 -8.0 155 133-316 33-187 (264)
34 PF14580 LRR_9: Leucine-rich r 98.8 1.3E-09 2.9E-14 91.1 2.6 83 247-343 43-126 (175)
35 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.4E-14 90.0 3.3 128 247-394 20-148 (175)
36 KOG1259 Nischarin, modulator o 98.8 4.4E-10 9.5E-15 98.3 -0.8 126 275-427 285-411 (490)
37 KOG0617 Ras suppressor protein 98.8 6E-11 1.3E-15 95.1 -6.1 153 247-428 34-186 (264)
38 KOG1947 Leucine rich repeat pr 98.7 3.2E-07 6.9E-12 92.3 14.5 243 160-437 187-450 (482)
39 KOG1947 Leucine rich repeat pr 98.6 1.3E-06 2.8E-11 87.9 16.1 242 188-467 187-450 (482)
40 KOG2982 Uncharacterized conser 98.5 8.8E-08 1.9E-12 84.1 4.4 109 219-340 47-156 (418)
41 KOG1259 Nischarin, modulator o 98.5 3.1E-08 6.8E-13 86.9 1.4 219 95-344 172-413 (490)
42 KOG2982 Uncharacterized conser 98.5 1.9E-07 4E-12 82.1 5.7 211 51-288 47-263 (418)
43 KOG3665 ZYG-1-like serine/thre 98.5 9.3E-07 2E-11 90.4 11.0 121 216-350 147-270 (699)
44 KOG3665 ZYG-1-like serine/thre 98.4 1.3E-06 2.9E-11 89.3 11.1 157 217-393 122-282 (699)
45 COG4886 Leucine-rich repeat (L 98.3 6.8E-07 1.5E-11 87.3 5.4 175 133-344 116-291 (394)
46 KOG1859 Leucine-rich repeat pr 98.3 3.9E-07 8.4E-12 89.5 2.8 108 301-429 186-293 (1096)
47 KOG1859 Leucine-rich repeat pr 98.2 2.7E-07 5.8E-12 90.6 0.9 130 302-459 164-293 (1096)
48 COG4886 Leucine-rich repeat (L 98.2 7.9E-07 1.7E-11 86.8 2.6 175 216-428 115-290 (394)
49 KOG0532 Leucine-rich repeat (L 98.0 1.9E-07 4.2E-12 89.1 -5.9 104 247-368 167-270 (722)
50 PLN03150 hypothetical protein; 97.9 2.1E-05 4.6E-10 80.8 7.3 107 276-397 420-526 (623)
51 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.4E-11 86.1 -2.6 128 189-343 72-199 (414)
52 KOG0531 Protein phosphatase 1, 97.8 7.4E-07 1.6E-11 87.2 -4.6 108 102-230 92-199 (414)
53 PF13855 LRR_8: Leucine rich r 97.8 1.2E-06 2.6E-11 59.9 -2.5 15 386-400 25-39 (61)
54 KOG4242 Predicted myosin-I-bin 97.7 3E-05 6.4E-10 72.8 4.3 350 74-442 132-495 (553)
55 PLN03150 hypothetical protein; 97.7 5.4E-05 1.2E-09 77.8 6.5 107 304-426 420-526 (623)
56 KOG4658 Apoptotic ATPase [Sign 97.7 3E-05 6.4E-10 81.8 3.9 186 132-344 544-731 (889)
57 PF13855 LRR_8: Leucine rich r 97.7 2.7E-06 5.9E-11 58.2 -2.6 61 386-457 1-61 (61)
58 KOG0532 Leucine-rich repeat (L 97.6 1.2E-06 2.6E-11 83.9 -6.8 174 188-396 97-270 (722)
59 PF12799 LRR_4: Leucine Rich r 97.4 0.00021 4.6E-09 44.7 3.2 36 303-343 2-37 (44)
60 KOG4658 Apoptotic ATPase [Sign 97.3 0.00011 2.3E-09 77.7 2.4 33 247-284 596-628 (889)
61 KOG4242 Predicted myosin-I-bin 97.3 0.00034 7.4E-09 65.9 5.0 383 68-471 98-494 (553)
62 PF12799 LRR_4: Leucine Rich r 97.2 0.00034 7.3E-09 43.8 3.0 37 247-288 2-38 (44)
63 KOG3735 Tropomodulin and leiom 97.2 0.0012 2.6E-08 59.7 7.2 119 274-392 198-319 (353)
64 KOG4579 Leucine-rich repeat (L 97.1 0.00049 1.1E-08 53.9 3.6 115 302-433 27-141 (177)
65 KOG3864 Uncharacterized conser 97.1 0.00098 2.1E-08 55.9 5.4 83 247-340 102-186 (221)
66 KOG4579 Leucine-rich repeat (L 97.1 0.00059 1.3E-08 53.5 3.4 109 276-401 29-138 (177)
67 KOG2123 Uncharacterized conser 97.0 0.00031 6.7E-09 61.8 1.4 104 302-421 19-123 (388)
68 KOG3735 Tropomodulin and leiom 96.9 0.0068 1.5E-07 55.0 8.9 131 237-367 189-322 (353)
69 KOG3864 Uncharacterized conser 96.8 0.0008 1.7E-08 56.4 2.3 34 303-340 102-135 (221)
70 smart00368 LRR_RI Leucine rich 96.6 0.0035 7.5E-08 34.8 3.4 24 415-438 2-25 (28)
71 KOG1644 U2-associated snRNP A' 96.6 0.00079 1.7E-08 56.4 0.8 108 247-369 43-151 (233)
72 smart00368 LRR_RI Leucine rich 96.5 0.0036 7.7E-08 34.7 3.1 25 386-410 2-26 (28)
73 KOG2123 Uncharacterized conser 96.5 0.00075 1.6E-08 59.4 0.4 103 106-223 20-123 (388)
74 PF13516 LRR_6: Leucine Rich r 96.3 0.0022 4.8E-08 34.1 1.5 19 417-435 4-22 (24)
75 PF13516 LRR_6: Leucine Rich r 96.0 0.0055 1.2E-07 32.5 1.9 22 386-407 2-23 (24)
76 KOG1644 U2-associated snRNP A' 95.9 0.0039 8.5E-08 52.4 1.7 16 132-147 63-78 (233)
77 KOG2739 Leucine-rich acidic nu 95.9 0.0026 5.6E-08 55.7 0.5 64 301-370 64-128 (260)
78 smart00367 LRR_CC Leucine-rich 95.4 0.016 3.5E-07 31.4 2.2 21 386-406 2-23 (26)
79 PRK15386 type III secretion pr 94.5 0.063 1.4E-06 51.4 5.2 137 185-368 48-187 (426)
80 KOG2739 Leucine-rich acidic nu 93.3 0.038 8.2E-07 48.6 1.2 12 274-285 91-102 (260)
81 smart00367 LRR_CC Leucine-rich 92.8 0.14 2.9E-06 27.7 2.6 20 274-293 2-22 (26)
82 PRK15386 type III secretion pr 92.8 0.24 5.3E-06 47.5 5.9 142 126-312 45-187 (426)
83 PF13504 LRR_7: Leucine rich r 89.5 0.29 6.3E-06 23.3 1.6 12 387-398 2-13 (17)
84 PF00560 LRR_1: Leucine Rich R 86.7 0.31 6.7E-06 25.0 0.7 16 447-462 2-17 (22)
85 KOG3763 mRNA export factor TAP 82.9 2.1 4.6E-05 42.2 4.9 194 271-484 215-441 (585)
86 KOG3763 mRNA export factor TAP 79.0 3 6.6E-05 41.2 4.6 92 239-336 211-307 (585)
87 smart00369 LRR_TYP Leucine-ric 69.0 3.2 6.9E-05 22.1 1.2 19 447-465 4-22 (26)
88 smart00370 LRR Leucine-rich re 69.0 3.2 6.9E-05 22.1 1.2 19 447-465 4-22 (26)
89 PF13306 LRR_5: Leucine rich r 65.5 0.52 1.1E-05 37.4 -3.5 15 326-340 31-45 (129)
90 smart00365 LRR_SD22 Leucine-ri 57.0 9.3 0.0002 20.6 1.6 14 415-428 2-15 (26)
91 PF13306 LRR_5: Leucine rich r 48.1 2.3 4.9E-05 33.6 -2.5 119 325-468 7-125 (129)
92 smart00364 LRR_BAC Leucine-ric 37.9 20 0.00044 19.3 1.0 14 387-400 3-16 (26)
93 PF14443 DBC1: DBC1 36.3 23 0.00051 27.7 1.6 42 12-60 21-62 (126)
94 PF07723 LRR_2: Leucine Rich R 27.0 46 0.001 17.8 1.3 6 250-255 4-9 (26)
95 PF03382 DUF285: Mycoplasma pr 26.6 27 0.00058 27.3 0.5 14 96-109 52-65 (120)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=2.8e-28 Score=231.17 Aligned_cols=313 Identities=31% Similarity=0.410 Sum_probs=186.8
Q ss_pred EecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCC--chHHHHHHHHHhc
Q 011480 110 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALLE 187 (484)
Q Consensus 110 L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~--~~~~~~l~~~l~~ 187 (484)
|+|..+.++...+..+...+ ..|++|+++++.+++.+...++..+...+.+++++++++.+. ..++..++.++..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 45555555544433333322 446777777777666666666666666666777777666665 4455555556666
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 188 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
+++|+.|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|++|++++|.++..+...+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 6666666666666654333333333333 557777777766665555555544443323666677776666655555555
Q ss_pred HHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHH
Q 011480 268 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 347 (484)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~ 347 (484)
..+..+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 56666666777777776666666666665565566677777777766666666666666666667777776666666555
Q ss_pred HHHHHHHHh-CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 348 KALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 348 ~~l~~~~~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
..+...+.. .+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++++...++..+...-+.|+++++.+|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 555544322 3566666666666665555555555555566666666666666666665555554322456666665553
No 2
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=2.7e-27 Score=224.39 Aligned_cols=312 Identities=30% Similarity=0.413 Sum_probs=176.7
Q ss_pred EEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCC--hhHHHHHHHHHH
Q 011480 53 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 130 (484)
Q Consensus 53 ~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~--~~~~~~l~~~l~ 130 (484)
.|+|..+.+.+..+..+...+ .+|++|++++|.+++.+...++..+...+++++++++++.+. ...+..+...+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 355666666544443333332 447777777777777666666666666666777777766665 445555555555
Q ss_pred hCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcC-CCccEEEcCCCCCChHHHHHH
Q 011480 131 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 209 (484)
Q Consensus 131 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~~l 209 (484)
.+++|++|++++|.+.......+...... +.|++|++++|.+.+.+...+...+..+ ++|+.|++++|.++......+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 56666666666666655444444444333 4566666666666555555555555444 555555555555544333344
Q ss_pred HHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcH
Q 011480 210 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 289 (484)
Q Consensus 210 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 289 (484)
...+..++.|+ +|++++|.+.+.+...++..+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~-----------------------------~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 158 AKALRANRDLK-----------------------------ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCcC-----------------------------EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 44444444444 4555444444444444444444555555556555555555
Q ss_pred HHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhh-cCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 290 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK-DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~-~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
+...+...+..+++|++|++++|.+++.++..++..+. ..+.|++|++++|.+++.+...+...+..+++|+++++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 55555555555556666666666666555555544332 13566666666666666555555555555566666666666
Q ss_pred CCChhHHHHHHHHHHcC-CCccEEEeccCC
Q 011480 369 QIGASGAEFVADMLRYN-NTISILDLRANG 397 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~ 397 (484)
.+++.+...++..+... +.|+++++.+|.
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 289 KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 66666666666665555 566666666554
No 3
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-27 Score=209.64 Aligned_cols=295 Identities=24% Similarity=0.306 Sum_probs=242.0
Q ss_pred HHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCCh
Q 011480 152 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 231 (484)
Q Consensus 152 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 231 (484)
.+...+..+|.|+.|+||+|-+++.++..+...+.++..|++|.+.+|.++......+..++..+..
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~------------- 149 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAV------------- 149 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHH-------------
Confidence 4455566677888888888888888888888888888888888888888887777776665433221
Q ss_pred hHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccC
Q 011480 232 EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 311 (484)
Q Consensus 232 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~ 311 (484)
.... ...+.|+.+..+.|++.+.+...++..++..+.|+.+.+..|.+..+++..+...+..+++|+.||+.+
T Consensus 150 ------~kk~-~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 150 ------NKKA-ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ------Hhcc-CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence 1111 123479999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHh-CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccE
Q 011480 312 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 390 (484)
Q Consensus 312 ~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~ 390 (484)
|-++.++-..++..++..+.|++|++++|.+.+.|...+...+.. .|+|+.|.+.+|.|+.++...+..++..-|.|+.
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence 999999999999999999999999999999999999888888765 7899999999999999999999999888999999
Q ss_pred EEeccCCC--CchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 391 LDLRANGL--RDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 391 L~l~~n~i--~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
|+|++|.+ .++++..+...+..-..-+...+-+.+.+.+.+-...........+ -+.+++.++.+.+.+++.+.+.
T Consensus 303 LnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t--~~e~~ed~e~ie~e~~ee~~e~ 380 (382)
T KOG1909|consen 303 LNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKET--FKELNEDGEVIEEEGIEELKEI 380 (382)
T ss_pred hcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCc--chhhcccccccchhHHHHhhhh
Confidence 99999999 8888888887763322345666777788888888887777665554 7888888899988888877653
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.95 E-value=9.8e-27 Score=204.93 Aligned_cols=355 Identities=23% Similarity=0.342 Sum_probs=248.4
Q ss_pred chhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCC---CC---HHHHHHHHHHhhcCCCC
Q 011480 34 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG---IT---AAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---l~---~~~~~~l~~~l~~~~~L 107 (484)
+.++.+.+.+.+....+++.++||+|.++....+++++.+.+.+.|+..++++.- .. ...+..|...+..++.|
T Consensus 15 t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 15 TEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 4555666777777889999999999999999999999999999999999999862 21 34566777888888899
Q ss_pred CEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhc
Q 011480 108 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 187 (484)
Q Consensus 108 ~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 187 (484)
++|+||+|.++..+++.+...++.+.+|++|.+.+|.++..+...++..+.. |. ..+.+..
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~------l~-------------~~kk~~~ 155 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFE------LA-------------VNKKAAS 155 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHH------HH-------------HHhccCC
Confidence 9999999999999999999999999999999999999988877776664321 11 0111222
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 188 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
.+.|+.+...+|++...+...+...++.++.|+.+.+..|.+..+++..+..++..+ ++|+.||+..|.++..+...++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHH
Confidence 345555555555555555555555555566666666666666655555555555432 3666666666666666666666
Q ss_pred HHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHh-CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCC--Ch
Q 011480 268 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI--GA 344 (484)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i--~~ 344 (484)
+.++.+++|+.|++++|.+.+.|...+...+.. .++|+.|.+.+|.|+.++...+.......|.|+.|++++|.+ .+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~d 314 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKD 314 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccc
Confidence 677777777777777777777777777776654 567777777777777777777766666677777777777777 45
Q ss_pred hHHHHHHHHHHh-CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHH
Q 011480 345 DGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 408 (484)
Q Consensus 345 ~~~~~l~~~~~~-~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 408 (484)
+++..+...+.. ...+...+.+.+.+.+.+......-.....+-+.+++.++.+.+.+...+..
T Consensus 315 e~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~e 379 (382)
T KOG1909|consen 315 EGIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELKE 379 (382)
T ss_pred hhHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhhh
Confidence 555555544421 2344455555566666666666666666677778888888888777666544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.2e-26 Score=251.41 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=94.0
Q ss_pred HHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHH
Q 011480 43 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 122 (484)
Q Consensus 43 ~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~ 122 (484)
..+..+++|++|++++|.+... ++..+..+++|+.|++++|.++.... ..+..+++|++|++++|.+...
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~-- 251 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIP----YEIGGLTSLNHLDLVYNNLTGP-- 251 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCC----hhHhcCCCCCEEECcCceeccc--
Confidence 4456778888888888877543 33445566788888888877653322 2234556777777777766433
Q ss_pred HHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCC
Q 011480 123 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 202 (484)
Q Consensus 123 ~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 202 (484)
+...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.. .++..+..+++|+.|++++|.++
T Consensus 252 --~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 252 --IPSSLGNLKNLQYLFLYQNKLSGPI----PPSIFSLQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred --cChhHhCCCCCCEEECcCCeeeccC----chhHhhccCcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccC
Confidence 2333444567777777777665432 2223334666666666666542 23344445556666666655544
Q ss_pred hHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 011480 203 ALGANALAKGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 203 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 230 (484)
.. ++..+..+++|+.|++++|.+.
T Consensus 322 ~~----~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 322 GK----IPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred Cc----CChhHhcCCCCCEEECcCCCCc
Confidence 32 1233344555555555555543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.5e-26 Score=250.81 Aligned_cols=361 Identities=19% Similarity=0.170 Sum_probs=189.2
Q ss_pred HHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhH
Q 011480 42 NEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 121 (484)
Q Consensus 42 ~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~ 121 (484)
...+..+++|+.|++++|.+...... ..+..+++|++|++++|.++..... ...++|++|++++|.+...
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~~- 155 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPD---DIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSGE- 155 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCCh---HHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCccccc-
Confidence 34566788899999998887532211 1223567888888888876422110 2345677777777766533
Q ss_pred HHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCC
Q 011480 122 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG 201 (484)
Q Consensus 122 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 201 (484)
+...+..+++|++|++++|.+... ++..+.++++|++|++++|.+. ..++..+..+++|+.|++++|.+
T Consensus 156 ---~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 156 ---IPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ---CChHHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCc----CcCChHHcCcCCccEEECcCCcc
Confidence 223334457777777777766543 2233344566777777777664 22344555666667776666655
Q ss_pred ChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEc
Q 011480 202 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 281 (484)
Q Consensus 202 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 281 (484)
+. .++..+..+++|++|++++|.+.+.....+ ...++|++|++++|.+.+. ++..+..+++|++|++
T Consensus 225 ~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 225 SG----EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GNLKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDL 291 (968)
T ss_pred CC----cCChhHhcCCCCCEEECcCceeccccChhH-----hCCCCCCEEECcCCeeecc----CchhHhhccCcCEEEC
Confidence 43 222334556666666666665543211111 1122566666666655443 3334445555666666
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcC
Q 011480 282 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 361 (484)
Q Consensus 282 ~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~ 361 (484)
++|.+... ++..+..+++|++|++++|.++... ...+..+++|+.|++++|.+...... .+...++|+
T Consensus 292 s~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~~~~L~ 359 (968)
T PLN00113 292 SDNSLSGE----IPELVIQLQNLEILHLFSNNFTGKI----PVALTSLPRLQVLQLWSNKFSGEIPK----NLGKHNNLT 359 (968)
T ss_pred cCCeeccC----CChhHcCCCCCcEEECCCCccCCcC----ChhHhcCCCCCEEECcCCCCcCcCCh----HHhCCCCCc
Confidence 55555432 2333344455555555555554332 12233335555555555544432211 122234444
Q ss_pred EEeccCCCCChhHHHH--------------------HHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEE
Q 011480 362 TLKLGWCQIGASGAEF--------------------VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 421 (484)
Q Consensus 362 ~L~l~~~~i~~~~~~~--------------------l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~ 421 (484)
.|++++|.+++..... ++..+..+++|+.|++++|.++......+... +.|+.|+
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~ 434 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-----PLVYFLD 434 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-----CCCCEEE
Confidence 4444444443221111 22233445667777777766665433333221 5677777
Q ss_pred cCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 422 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 422 l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
+++|.++......+. ..+ +|+.|++++|.+..
T Consensus 435 Ls~N~l~~~~~~~~~----~l~--~L~~L~L~~n~~~~ 466 (968)
T PLN00113 435 ISNNNLQGRINSRKW----DMP--SLQMLSLARNKFFG 466 (968)
T ss_pred CcCCcccCccChhhc----cCC--CCcEEECcCceeee
Confidence 777766543322222 223 47777777776654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.3e-28 Score=226.23 Aligned_cols=362 Identities=19% Similarity=0.179 Sum_probs=267.0
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+..+.|++++|.+.+.++..+ .+.++|+++++.+|.++ .+........+++.|+|.+|.|....-+.+...
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt-----~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELT-----RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred cceeeeeccccccccCcHHHH----hcCCcceeeeeccchhh-----hcccccccccceeEEeeeccccccccHHHHHhH
Confidence 346689999999998875544 45699999999999864 344444445579999999998876655555444
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 208 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 208 (484)
+.|+.|+++.|.++...-..++. -.++++|++++|.++.-+ ...+..+.+|..|.++.|+++....
T Consensus 149 ----~alrslDLSrN~is~i~~~sfp~----~~ni~~L~La~N~It~l~----~~~F~~lnsL~tlkLsrNrittLp~-- 214 (873)
T KOG4194|consen 149 ----PALRSLDLSRNLISEIPKPSFPA----KVNIKKLNLASNRITTLE----TGHFDSLNSLLTLKLSRNRITTLPQ-- 214 (873)
T ss_pred ----hhhhhhhhhhchhhcccCCCCCC----CCCceEEeeccccccccc----cccccccchheeeecccCcccccCH--
Confidence 88999999999887644333333 267999999999997543 2344556799999999999886554
Q ss_pred HHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 209 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 209 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
..+.++++|+.|++..|.+.-...-.+ + ..++|+.|.+..|.+..-.- .++-.+.++++|+|+.|++..
T Consensus 215 --r~Fk~L~~L~~LdLnrN~irive~ltF-q----gL~Sl~nlklqrN~I~kL~D----G~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 215 --RSFKRLPKLESLDLNRNRIRIVEGLTF-Q----GLPSLQNLKLQRNDISKLDD----GAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred --HHhhhcchhhhhhccccceeeehhhhh-c----CchhhhhhhhhhcCcccccC----cceeeecccceeecccchhhh
Confidence 456679999999999998755322222 2 33478999999998775211 134567899999999998865
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
-. -.++..++.|+.|+++.|.|....+.. .+.+++|++|+|++|.|+.-.-..+... ..|+.|.|++|
T Consensus 284 vn----~g~lfgLt~L~~L~lS~NaI~rih~d~----WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~N 351 (873)
T KOG4194|consen 284 VN----EGWLFGLTSLEQLDLSYNAIQRIHIDS----WSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHN 351 (873)
T ss_pred hh----cccccccchhhhhccchhhhheeecch----hhhcccceeEeccccccccCChhHHHHH----HHhhhhccccc
Confidence 32 223446789999999999877654433 3446999999999998876555444433 68999999999
Q ss_pred CCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCcccee
Q 011480 369 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVT 448 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~ 448 (484)
.++.....+|..+ ++|++|||+.|.+.-..=. -+..|.+. ++|++|++.+|++.....+++... ..|+
T Consensus 352 si~~l~e~af~~l----ssL~~LdLr~N~ls~~IED-aa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl------~~LE 419 (873)
T KOG4194|consen 352 SIDHLAEGAFVGL----SSLHKLDLRSNELSWCIED-AAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGL------EALE 419 (873)
T ss_pred chHHHHhhHHHHh----hhhhhhcCcCCeEEEEEec-chhhhccc-hhhhheeecCceeeecchhhhccC------cccc
Confidence 9987666555554 8999999999976432110 11223222 789999999999998888888766 4699
Q ss_pred EeeccCCcCchhhhhhhhhh
Q 011480 449 SLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 449 ~l~l~~n~i~~~~~~~l~~~ 468 (484)
+||+.+|-|...-..+|...
T Consensus 420 ~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 420 HLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred eecCCCCcceeecccccccc
Confidence 99999999999988888776
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.8e-26 Score=211.67 Aligned_cols=377 Identities=20% Similarity=0.206 Sum_probs=263.2
Q ss_pred ccccccchhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCC
Q 011480 28 GFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 28 ~~~~~~~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 107 (484)
....++...+.. ++..+++|+++.|..|.++. ++......-+++.|+|.+|.++...-+.+... +.|
T Consensus 85 lsnNkl~~id~~----~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~al 151 (873)
T KOG4194|consen 85 LSNNKLSHIDFE----FFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PAL 151 (873)
T ss_pred ccccccccCcHH----HHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHhH----hhh
Confidence 344455555543 45679999999999887653 45554556789999999998876665555433 459
Q ss_pred CEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhc
Q 011480 108 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 187 (484)
Q Consensus 108 ~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 187 (484)
++|||+.|.|+......+ ..-.++++|++++|.|+..+...|... .+|..|.++.|+++ ......++.
T Consensus 152 rslDLSrN~is~i~~~sf----p~~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrit----tLp~r~Fk~ 219 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSF----PAKVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRIT----TLPQRSFKR 219 (873)
T ss_pred hhhhhhhchhhcccCCCC----CCCCCceEEeecccccccccccccccc----chheeeecccCccc----ccCHHHhhh
Confidence 999999998764322222 223789999999999998777666665 68999999999986 333456667
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 188 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
+++|+.|++..|.+..... -.+..+++|+.|.+..|++..-.-..+ -...++++|+++.|++... -.
T Consensus 220 L~~L~~LdLnrN~irive~----ltFqgL~Sl~nlklqrN~I~kL~DG~F-----y~l~kme~l~L~~N~l~~v----n~ 286 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEG----LTFQGLPSLQNLKLQRNDISKLDDGAF-----YGLEKMEHLNLETNRLQAV----NE 286 (873)
T ss_pred cchhhhhhccccceeeehh----hhhcCchhhhhhhhhhcCcccccCcce-----eeecccceeecccchhhhh----hc
Confidence 9999999999998764432 236688999999999888764211111 2234899999999988764 22
Q ss_pred HHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHH
Q 011480 268 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 347 (484)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~ 347 (484)
.++-.++.|++|++++|.|.-.. .+.+..+++|+.|+|+.|+|+.-....+.. ...|++|+|+.|.++...-
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred ccccccchhhhhccchhhhheee----cchhhhcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHh
Confidence 34567888999999999775432 233555789999999999888654444433 3889999999997754322
Q ss_pred HHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCC
Q 011480 348 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 427 (484)
Q Consensus 348 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 427 (484)
-.+ ....+|+.|||+.|.++..-.. -+..+...+.|+.|++.||++....-..+... ..|++|||.+|.|
T Consensus 359 ~af----~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl-----~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 359 GAF----VGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL-----EALEHLDLGDNAI 428 (873)
T ss_pred hHH----HHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeeecchhhhccC-----cccceecCCCCcc
Confidence 222 2236899999999986532111 22333445899999999998887665555443 7899999999988
Q ss_pred ChhHHHHHHHHHHhCCccceeEeeccC-CcCchhhhhhhhh
Q 011480 428 RDDGAFAIAQALKANEDVAVTSLNLAN-NFLTKFGQSALTD 467 (484)
Q Consensus 428 ~~~~~~~l~~~l~~~~~~~L~~l~l~~-n~i~~~~~~~l~~ 467 (484)
-.....++..+ .|++|-+.. +.+.+.....+++
T Consensus 429 aSIq~nAFe~m-------~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 429 ASIQPNAFEPM-------ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred eeecccccccc-------hhhhhhhcccceEEeccHHHHHH
Confidence 77666666555 367776664 4566666666654
No 9
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.85 E-value=2.5e-21 Score=187.36 Aligned_cols=421 Identities=29% Similarity=0.394 Sum_probs=355.1
Q ss_pred hhHHHHHHHHHHcccceEEeCCCCCCChhH---HHHHHHHhcc--CCC--cceEecccCCCCHHHHHHHHHHhhcCCCCC
Q 011480 36 ESKQTLNEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGY--NQT--AEEVSFAANGITAAGIKAFDGVLQSNIALK 108 (484)
Q Consensus 36 ~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~---~~~l~~~l~~--~~~--L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~ 108 (484)
.....+....+..+.+..+.++.+...+.. .......+.. ++. +..|.+.+|.+.+.++..++..+..+++|.
T Consensus 39 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~ 118 (478)
T KOG4308|consen 39 DTCRDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLG 118 (478)
T ss_pred cchHHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHh
Confidence 456667777777788999999888877665 2233333333 222 889999999999999999999999999999
Q ss_pred EEecCCCCCChhHHHHHHHHHHhC-CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhc
Q 011480 109 TLNLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 187 (484)
Q Consensus 109 ~L~L~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 187 (484)
.|++++|.+++.++..+.+.+... +.++.|.+..|.++..+...++..+..+..++.++++.|.+...+...+...+..
T Consensus 119 ~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~ 198 (478)
T KOG4308|consen 119 QLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALES 198 (478)
T ss_pred HhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhh
Confidence 999999999999999999998886 7889999999999999999999999888999999999999988888888887775
Q ss_pred ----CCCccEEEcCCCCCChHHHHHHHHHhhcCCC-cCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhh
Q 011480 188 ----NSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 262 (484)
Q Consensus 188 ----~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 262 (484)
..++++|.+.+|.++...+..+...+...+. +.+|++..|.+.+.++..+...+....+.++++++..|.+++.+
T Consensus 199 ~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 199 AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG 278 (478)
T ss_pred hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc
Confidence 6789999999999999999888888888887 88899999999999999988888876568999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCC-ChhHHHHHHHHhhcCCCcCEEECCCCC
Q 011480 263 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYNP 341 (484)
Q Consensus 263 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l-~~~~~~~l~~~l~~~~~L~~L~ls~n~ 341 (484)
...+...+..++.++.+.+..|.+.+.+...+.+.+.....+.++-+.++.. +..+...+..+......+....++++.
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNR 358 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhcc
Confidence 9999999999999999999999999999999999888878888888886544 444444455555555666677778888
Q ss_pred CChhHHHHHHHHHHhCC-CcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEE
Q 011480 342 IGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 420 (484)
Q Consensus 342 i~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L 420 (484)
..+++...+........ .+..+++..+.+.+.+...+......++.++.++++.|...+++...+.......- .+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~ 437 (478)
T KOG4308|consen 359 VGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKAL 437 (478)
T ss_pred chHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhh
Confidence 88887777776655433 47788888888888888888888899999999999999999999888888776544 89999
Q ss_pred EcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 421 DLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 421 ~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
.++.|.++..+.....+....++. +..+-..+|.++.
T Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 438 RLSRNPITALGTEELQRALALNPG--ILAIRLRGNVIGR 474 (478)
T ss_pred hhccChhhhcchHHHHHHHhcCCC--cceeecccCcccc
Confidence 999999999999999999888887 8888777776654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.4e-23 Score=196.40 Aligned_cols=339 Identities=19% Similarity=0.193 Sum_probs=228.2
Q ss_pred cccccchhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCC
Q 011480 29 FTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 108 (484)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~ 108 (484)
.+.++.....+.+.+-+.++++|+.|.++.|++... -..+...+.|+.+.+..|.+...++.. -+.++..|+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-----hGELs~Lp~LRsv~~R~N~LKnsGiP~---diF~l~dLt 106 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-----HGELSDLPRLRSVIVRDNNLKNSGIPT---DIFRLKDLT 106 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-----hhhhccchhhHHHhhhccccccCCCCc---hhcccccce
Confidence 344444445555666666777777777777664432 233445577777777777666554332 223455688
Q ss_pred EEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcC
Q 011480 109 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN 188 (484)
Q Consensus 109 ~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 188 (484)
.|||++|++.. .+..+.+..++-.|++++|+|....-..+.. +..|-.||+++|++ ..++..+..+
T Consensus 107 ~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfin----LtDLLfLDLS~NrL-----e~LPPQ~RRL 172 (1255)
T KOG0444|consen 107 ILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFIN----LTDLLFLDLSNNRL-----EMLPPQIRRL 172 (1255)
T ss_pred eeecchhhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHh----hHhHhhhccccchh-----hhcCHHHHHH
Confidence 88888887643 3344455577888888888876543333333 35677888888887 5667777777
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
..|++|.+++|.+.......+ ..+.+|+.|++++..-+-..++.-...+. +|..+|++.|.+.. ++.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~----NL~dvDlS~N~Lp~-----vPe 239 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLH----NLRDVDLSENNLPI-----VPE 239 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcC----ccchhhhhhhcccccchhhcCCCchhhhh----hhhhccccccCCCc-----chH
Confidence 888999999887765444333 35567778888876543333333333333 78889999988776 778
Q ss_pred HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH
Q 011480 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 348 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~ 348 (484)
.+-..++|+.|+|++|.+++- ........+|++|+++.|+++. ++.++.+.+.|+.|.+.+|+++-+|+
T Consensus 240 cly~l~~LrrLNLS~N~iteL-----~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGi- 308 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITEL-----NMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGI- 308 (1255)
T ss_pred HHhhhhhhheeccCcCceeee-----eccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCC-
Confidence 888889999999999988873 3334456789999999998875 56667777999999999998876664
Q ss_pred HHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 349 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 349 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
..++++..+|+.+..++|.+ +.+++.+..|..|+.|.++.|++-. +..++.-. +.|..||+..|.
T Consensus 309 --PSGIGKL~~Levf~aanN~L-----ElVPEglcRC~kL~kL~L~~NrLiT-----LPeaIHlL-~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 --PSGIGKLIQLEVFHAANNKL-----ELVPEGLCRCVKLQKLKLDHNRLIT-----LPEAIHLL-PDLKVLDLRENP 373 (1255)
T ss_pred --ccchhhhhhhHHHHhhcccc-----ccCchhhhhhHHHHHhcccccceee-----chhhhhhc-CCcceeeccCCc
Confidence 34555567788888888775 3466777778888888888885432 11222111 668888888874
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.1e-21 Score=185.19 Aligned_cols=346 Identities=19% Similarity=0.241 Sum_probs=201.7
Q ss_pred HHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhH
Q 011480 42 NEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 121 (484)
Q Consensus 42 ~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~ 121 (484)
..-++.++.++.|.|...+ +..+++.+.++.+|++|.+++|++. .+..-+...+.|+++++++|.+...+
T Consensus 25 P~~v~qMt~~~WLkLnrt~-----L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTK-----LEQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred chhHHHhhheeEEEechhh-----hhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC
Confidence 3444556667777766443 3445666666777777777777653 22233455667777777777766554
Q ss_pred HHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHH-HhcCCCccEEEcCCCC
Q 011480 122 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNY 200 (484)
Q Consensus 122 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~ 200 (484)
++.-+.++..|+.|++++|++.. .+..+...+++..|++++|.+ ..++.. +.++..|-.|+++.|+
T Consensus 95 ---iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 95 ---IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred ---CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccch
Confidence 33333345677777777777654 233344446777777777776 333332 3345566677777776
Q ss_pred CChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEE
Q 011480 201 GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 280 (484)
Q Consensus 201 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~ 280 (484)
+. .+|..+..+..|++|.+++|.+.-..+..+ ++ ...|+.|.+++..-+ ...++..+..+.+|+.+|
T Consensus 162 Le-----~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL----Ps-mtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 162 LE-----MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL----PS-MTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hh-----hcCHHHHHHhhhhhhhcCCChhhHHHHhcC----cc-chhhhhhhcccccch---hhcCCCchhhhhhhhhcc
Confidence 53 444555566677777777776644333332 11 125666666654322 222455566666777777
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCc
Q 011480 281 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 360 (484)
Q Consensus 281 l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L 360 (484)
++.|.+.- ++.++....+|+.|+|++|+|+.-... ...+ .+|++|++|.|.++. +...+.+.++|
T Consensus 229 lS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~~-~~~W----~~lEtLNlSrNQLt~-----LP~avcKL~kL 293 (1255)
T KOG0444|consen 229 LSENNLPI-----VPECLYKLRNLRRLNLSGNKITELNMT-EGEW----ENLETLNLSRNQLTV-----LPDAVCKLTKL 293 (1255)
T ss_pred ccccCCCc-----chHHHhhhhhhheeccCcCceeeeecc-HHHH----hhhhhhccccchhcc-----chHHHhhhHHH
Confidence 77776654 566666677777777777777653221 2222 667777777775542 34444555677
Q ss_pred CEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC-CChhHHHHHHHHH
Q 011480 361 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE-IRDDGAFAIAQAL 439 (484)
Q Consensus 361 ~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~l 439 (484)
+.|...+|.++-++ ++..+.+..+|+++...+|.+.- .+..++++ ..|+.|.++.|+ ||-....++..
T Consensus 294 ~kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LEl-VPEglcRC-----~kL~kL~L~~NrLiTLPeaIHlL~-- 362 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC-----VKLQKLKLDHNRLITLPEAIHLLP-- 362 (1255)
T ss_pred HHHHhccCcccccC---CccchhhhhhhHHHHhhcccccc-Cchhhhhh-----HHHHHhcccccceeechhhhhhcC--
Confidence 77777777665432 33444445667777777765432 12334443 457778887776 44333333322
Q ss_pred HhCCccceeEeeccCC
Q 011480 440 KANEDVAVTSLNLANN 455 (484)
Q Consensus 440 ~~~~~~~L~~l~l~~n 455 (484)
.|+.||+.+|
T Consensus 363 ------~l~vLDlreN 372 (1255)
T KOG0444|consen 363 ------DLKVLDLREN 372 (1255)
T ss_pred ------CcceeeccCC
Confidence 3777777766
No 12
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.79 E-value=2.6e-19 Score=173.35 Aligned_cols=404 Identities=25% Similarity=0.323 Sum_probs=214.2
Q ss_pred HHHHHHHhccCCCcceEecccCCCCHHHH---HHHHHHhhcCCC----CCEEecCCCCCChhHHHHHHHHHHhCCCcCEE
Q 011480 66 LFFLAESLGYNQTAEEVSFAANGITAAGI---KAFDGVLQSNIA----LKTLNLSGNPIGDEGVKCLCDILVDNAGVERL 138 (484)
Q Consensus 66 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~l~~~~~----L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L 138 (484)
...+...+...+.+..+.+..|.....+. ......+..... +.++.|.+|.+.+.+.+.++..+...+.|..|
T Consensus 41 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L 120 (478)
T KOG4308|consen 41 CRDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQL 120 (478)
T ss_pred hHHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHh
Confidence 34444555556677777777776655542 111112111111 55566666666666666666666556666666
Q ss_pred EeeccCCChHHHHHHHHHHhcC-CCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhc--
Q 011480 139 QLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG-- 215 (484)
Q Consensus 139 ~l~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~-- 215 (484)
++++|.+++.+...+.+.+... +.++.|++..|.++..+...++..+..+..++.++++.|.+...+...+...+..
T Consensus 121 ~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~ 200 (478)
T KOG4308|consen 121 DLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAA 200 (478)
T ss_pred hcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhh
Confidence 6666666665555555555543 4455555555555555555555555555555555555555544444444444442
Q ss_pred --CCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcC-CCCcEEEcCCCCCCcHHHH
Q 011480 216 --NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 216 --~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~ 292 (484)
..++++|+++.+.++......+...+......+.++++.+|.+.+.+...+...+... +.+++++++.|.+++.+..
T Consensus 201 ~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 201 SPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred cccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 3445555555555555444444444444333244455555555555454444444444 4455555555555555555
Q ss_pred HHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHH-HHHHHHHHhCCCcCEEeccCCCCC
Q 011480 293 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA-KALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~-~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
.+.+.+..+..++.+.++.|.+++.++..+...+.....+..+.+.++.....+. ..+.........+.....+++...
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVG 360 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccch
Confidence 5555554445555555555555555555555555544444445444433222221 111111111122223333333444
Q ss_pred hhHHHHHHHHHHcCC-CccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEe
Q 011480 372 ASGAEFVADMLRYNN-TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 450 (484)
Q Consensus 372 ~~~~~~l~~~l~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l 450 (484)
+.+...+......-+ .+..+++..+.+.+.+...+..... .+..+++++++.|...+.+...+....+++- +++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~--~~~~~ 437 (478)
T KOG4308|consen 361 EEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLA-SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG--SLKAL 437 (478)
T ss_pred HHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhh-hcchhhhhhhhcCccchhhHHHHHHhhhhcc--cchhh
Confidence 444433333332222 2455566666666666655555443 2467788888888777777777777777666 48888
Q ss_pred eccCCcCchhhhhhhhhhhhhh
Q 011480 451 NLANNFLTKFGQSALTDAKDLV 472 (484)
Q Consensus 451 ~l~~n~i~~~~~~~l~~~~~~~ 472 (484)
.++.|.++..+..+.++.....
T Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~ 459 (478)
T KOG4308|consen 438 RLSRNPITALGTEELQRALALN 459 (478)
T ss_pred hhccChhhhcchHHHHHHHhcC
Confidence 8888888887777776654443
No 13
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.75 E-value=5.6e-17 Score=138.62 Aligned_cols=260 Identities=18% Similarity=0.190 Sum_probs=157.2
Q ss_pred chhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCC---CC---HHHHHHHHHHhhcCCCC
Q 011480 34 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG---IT---AAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---l~---~~~~~~l~~~l~~~~~L 107 (484)
+.+++++...-+..+..+++++||+|.|+.+...++++.+++-++|+..+++.-. .. ...+..+.+++..||+|
T Consensus 15 T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 15 TKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred ccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 5556666666666789999999999999999999999999999999999998753 11 23455666777788899
Q ss_pred CEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhc
Q 011480 108 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 187 (484)
Q Consensus 108 ~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 187 (484)
+.++||+|.++....+.+.++++...+|.+|.+++|.+.+.+-.-++..+..+. . .+-.+.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~-----------nKKaa~ 155 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------Y-----------NKKAAD 155 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------H-----------Hhhhcc
Confidence 999999988888888888888888888888888888887755544554321100 0 001112
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 188 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
-|.|+......|++-......+...+.....|+++.+..|.|..+++..+.-.=...+-+|+.||+..|.++..+...++
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 34455555555544333333344444444455555555555555544333211001111455555555555555555555
Q ss_pred HHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHh--CCCccEEEccCC
Q 011480 268 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGN 312 (484)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~--~~~L~~L~l~~~ 312 (484)
.++...+.|+.|.+.+|-++..|...+...+.. .++|..|-+.+|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 555555555555555555555554444444432 334444444443
No 14
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.72 E-value=1.6e-16 Score=135.93 Aligned_cols=247 Identities=20% Similarity=0.255 Sum_probs=168.6
Q ss_pred CCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCC---h---HHHHHHHHHHhcCCCccEEEccCCCCCchH
Q 011480 104 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNNNMIDYSG 177 (484)
Q Consensus 104 ~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~---~---~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~ 177 (484)
+..++.++||+|.|+.+..+.++..+.+-.+|+..++++...+ + .....+...+.+||.|+..++|+|-++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456666666666666666666666665556666665543211 1 112234455667888888888888888888
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCC
Q 011480 178 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 257 (484)
Q Consensus 178 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 257 (484)
...+.+++.+...|++|.+++|.+++.....+.+++..+...++ . ...+.|+.+.++.|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK-------------------a-a~kp~Le~vicgrNR 168 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK-------------------A-ADKPKLEVVICGRNR 168 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh-------------------h-ccCCCceEEEeccch
Confidence 88888888888888888888888877776666665543221111 0 122368888888887
Q ss_pred CChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHH-HHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEE
Q 011480 258 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 336 (484)
Q Consensus 258 i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ 336 (484)
+-.......+..+..-..|+.+.+..|.|.++|+..++- .+..+.+|+.||+.+|.++..+...++.++..-+.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 766555555555555567888888888888877655542 3345788888888888888888888888887777888888
Q ss_pred CCCCCCChhHHHHHHHHHHh--CCCcCEEeccCCCC
Q 011480 337 LAYNPIGADGAKALSEVLKF--HGNINTLKLGWCQI 370 (484)
Q Consensus 337 ls~n~i~~~~~~~l~~~~~~--~~~L~~L~l~~~~i 370 (484)
+..|-++..|+..+...+.. .|+|..|.+.+|.+
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 88888777777766665533 67777777777754
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=2.1e-18 Score=170.22 Aligned_cols=358 Identities=17% Similarity=0.193 Sum_probs=196.9
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHH--HHH------HH-------hhcCCCCCEEe
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIK--AFD------GV-------LQSNIALKTLN 111 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~--~l~------~~-------l~~~~~L~~L~ 111 (484)
.+++++++.|.++.+. .++..+....+|+.|++++|.+...... .+. .. +.. ..++.++
T Consensus 89 ~~~~l~~lnL~~n~l~-----~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~ 162 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-----SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLD 162 (1081)
T ss_pred hhhcchhheeccchhh-----cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhh
Confidence 4566777777766543 2344455556777777777765432111 000 00 000 1244555
Q ss_pred cCCCCCChhHHHHHHHHHHhCCCcCE-EEeeccCCChHHHHHHHH---HH----------hcCCCccEEEccCCCCCchH
Q 011480 112 LSGNPIGDEGVKCLCDILVDNAGVER-LQLSSVDLRDEGAKAIAE---LL----------KNNSILRVLELNNNMIDYSG 177 (484)
Q Consensus 112 L~~~~i~~~~~~~l~~~l~~~~~L~~-L~l~~~~~~~~~~~~l~~---~l----------~~~~~L~~L~l~~~~l~~~~ 177 (484)
+..+.+...-+..+ ..+++ |++++|.+.......+.. .. ...++++.|+.++|.+....
T Consensus 163 l~~n~l~~~~~~~i-------~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~ 235 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDI-------YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD 235 (1081)
T ss_pred hhhhhcccchhcch-------hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec
Confidence 55544443322222 22333 677766655221111111 00 01245566666666554111
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCC
Q 011480 178 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 257 (484)
Q Consensus 178 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 257 (484)
. ...+.+|+.++++.+.++ .++.++..+.+|+.+....|.+..- ...+. ...+|+.|.+..|.
T Consensus 236 ~------~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N~l~~l-p~ri~-----~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 236 V------HPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHNRLVAL-PLRIS-----RITSLVSLSAAYNE 298 (1081)
T ss_pred c------ccccccceeeecchhhhh-----cchHHHHhcccceEecccchhHHhh-HHHHh-----hhhhHHHHHhhhhh
Confidence 1 112457888888887664 4557777888888888888877432 11111 11146666666654
Q ss_pred CChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH--HHHHHH----H-------------H--hCCCccEEEccCCCCCh
Q 011480 258 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA--EKIADA----L-------------K--QNRTITTIDLGGNNIHS 316 (484)
Q Consensus 258 i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~~----l-------------~--~~~~L~~L~l~~~~l~~ 316 (484)
+.- ++..+...+.|++|+|..|.+.+--. ..+... + . ..+.|+.|.+.+|.+++
T Consensus 299 l~y-----ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 299 LEY-----IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhh-----CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 443 44455556667777776665543110 000000 0 0 12356677888888888
Q ss_pred hHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 317 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
..+..+ ...+.|+.|+|++|.++.-....+ .+.+.|++|+++||.++. ++..+..++.|+.|..-+|
T Consensus 374 ~c~p~l----~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 374 SCFPVL----VNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred cchhhh----ccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCC
Confidence 755443 445889999999987654333222 344688889999988754 3444555678888888777
Q ss_pred CCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhh
Q 011480 397 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 397 ~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l 465 (484)
.+..-. .+++. +.|+.+|++.|+++......... +..|++||++||.=....-+.|
T Consensus 441 ~l~~fP--e~~~l-----~qL~~lDlS~N~L~~~~l~~~~p------~p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 441 QLLSFP--ELAQL-----PQLKVLDLSCNNLSEVTLPEALP------SPNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred ceeech--hhhhc-----CcceEEecccchhhhhhhhhhCC------CcccceeeccCCcccccchhhh
Confidence 776532 44443 67888888888887654443322 1358888888885333333333
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=1.4e-18 Score=156.21 Aligned_cols=381 Identities=20% Similarity=0.235 Sum_probs=190.9
Q ss_pred chhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecC
Q 011480 34 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 113 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~ 113 (484)
..-+.+.+.+=++.+..++.++++.+.+.. ++..++....+..++.++++++ .+...+.+..++.+++.+
T Consensus 53 s~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 53 SHNDLEVLREDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred ccCchhhccHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhcc
Confidence 333445555666778888888888776532 2223333355566666666542 222223333445555555
Q ss_pred CCCCChh--HH----------------HHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCc
Q 011480 114 GNPIGDE--GV----------------KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY 175 (484)
Q Consensus 114 ~~~i~~~--~~----------------~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 175 (484)
+|.+..- +. ..+...+..+.++..+++.++.+.......+. ++.|++||.-.|.+
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N~L-- 195 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSNLL-- 195 (565)
T ss_pred ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-----HHHHHhcccchhhh--
Confidence 5543210 00 00111222223344444444443322221111 24455555555443
Q ss_pred hHHHHHHHHHhcCCCccEEEcCCCCCCh-----------------HHHHHHHHH-hhcCCCcCEEEccCCCCChhHHHHH
Q 011480 176 SGFTSLAEALLENSTIRSLHLNGNYGGA-----------------LGANALAKG-LEGNKSLRELHLHGNSIGDEGIRAL 237 (484)
Q Consensus 176 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~ 237 (484)
..++..++.+.+|+.|++..|++.. ...+.+++. +.+++++..|++..|++..-... +
T Consensus 196 ---~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~ 271 (565)
T KOG0472|consen 196 ---ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-I 271 (565)
T ss_pred ---hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-H
Confidence 3334444444444444444443211 111223332 23677777888888876542111 1
Q ss_pred HHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc-------HHHHHHHHHHHh----------
Q 011480 238 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD-------EGAEKIADALKQ---------- 300 (484)
Q Consensus 238 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~-------~~~~~l~~~l~~---------- 300 (484)
+ .+ .+|++||+++|.++. ++..++.+ +|+.|-+.+|.+.. .+..++.+.+..
T Consensus 272 c-lL----rsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 272 C-LL----RSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred H-Hh----hhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 1 11 257788888887776 55566666 77888888876532 122223222211
Q ss_pred --------------------CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh--H------------
Q 011480 301 --------------------NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD--G------------ 346 (484)
Q Consensus 301 --------------------~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~--~------------ 346 (484)
..+.+.|++++-+++......|-.+ +..-....+++.|.+.+. +
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~--~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA--KSEIVTSVNFSKNQLCELPKRLVELKELVTDLV 418 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh--hhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence 1144455555555554322222111 113355666666644321 1
Q ss_pred -----HHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchh-------------------
Q 011480 347 -----AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG------------------- 402 (484)
Q Consensus 347 -----~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~------------------- 402 (484)
..+....++..++|.-|++++|.+.+...+ +.. ...|+.||++.|++..-.
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~----lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGS----LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhhcchh-hhh----hhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence 111122334567888888888776554332 222 245888888887654321
Q ss_pred ----HHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhh
Q 011480 403 ----AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 403 ----~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l 465 (484)
...+..+ .+|.+||+.+|.+. .+...+..+.+ +++|+++||.|..-..+-+
T Consensus 494 ~~vd~~~l~nm-----~nL~tLDL~nNdlq-----~IPp~Lgnmtn--L~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 494 GSVDPSGLKNM-----RNLTTLDLQNNDLQ-----QIPPILGNMTN--LRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred cccChHHhhhh-----hhcceeccCCCchh-----hCChhhccccc--eeEEEecCCccCCCHHHHh
Confidence 1111111 56888888888764 34555666666 9999999999886544444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=8.9e-18 Score=165.92 Aligned_cols=367 Identities=19% Similarity=0.199 Sum_probs=184.3
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHH
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 126 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~ 126 (484)
+.+ |++|+|+++++.+-. ..+....+|+.|+++.|.+... ......+.+|+.++|.+|.+.. +.
T Consensus 44 ~v~-L~~l~lsnn~~~~fp-----~~it~l~~L~~ln~s~n~i~~v-----p~s~~~~~~l~~lnL~~n~l~~-----lP 107 (1081)
T KOG0618|consen 44 RVK-LKSLDLSNNQISSFP-----IQITLLSHLRQLNLSRNYIRSV-----PSSCSNMRNLQYLNLKNNRLQS-----LP 107 (1081)
T ss_pred eee-eEEeeccccccccCC-----chhhhHHHHhhcccchhhHhhC-----chhhhhhhcchhheeccchhhc-----Cc
Confidence 344 999999999887643 2223346888899888865432 2334556789999998886543 33
Q ss_pred HHHHhCCCcCEEEeeccCCChHH--HHHHHHH-------------HhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCc
Q 011480 127 DILVDNAGVERLQLSSVDLRDEG--AKAIAEL-------------LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI 191 (484)
Q Consensus 127 ~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~-------------l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 191 (484)
..++...+|++|+++.|.++... +..+... ++. ..++++++..+.+... +...+..+..
T Consensus 108 ~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~----~~~~i~~l~~- 181 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGS----FLIDIYNLTH- 181 (1081)
T ss_pred hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccc----hhcchhhhhe-
Confidence 44555688999999998765421 1111000 000 1244444444444322 1222222222
Q ss_pred cEEEcCCCCCChHHHHHHH---HHhh----------cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCC
Q 011480 192 RSLHLNGNYGGALGANALA---KGLE----------GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 258 (484)
Q Consensus 192 ~~L~l~~~~~~~~~~~~l~---~~l~----------~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 258 (484)
.|++++|.+.......+. .... ..++++.|+...|.+.... ..+. ..++++++++.+.+
T Consensus 182 -~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~------~~p~-p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 182 -QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD------VHPV-PLNLQYLDISHNNL 253 (1081)
T ss_pred -eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec------cccc-cccceeeecchhhh
Confidence 477777766522211110 0011 1233333444444333110 0111 22788888888887
Q ss_pred ChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECC
Q 011480 259 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 338 (484)
Q Consensus 259 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls 338 (484)
.. ++.++..|.+|+.+...+|.+.. ++..+...+.|+.|+...|.+.. +...+.+.+.|++|+|.
T Consensus 254 ~~-----lp~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l~~~~nel~y-----ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 254 SN-----LPEWIGACANLEALNANHNRLVA-----LPLRISRITSLVSLSAAYNELEY-----IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred hc-----chHHHHhcccceEecccchhHHh-----hHHHHhhhhhHHHHHhhhhhhhh-----CCCcccccceeeeeeeh
Confidence 77 67888888899999888887732 22223333444444444443221 22223333555555555
Q ss_pred CCCCChhHHHHH--HHH----H---------------HhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCC
Q 011480 339 YNPIGADGAKAL--SEV----L---------------KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 397 (484)
Q Consensus 339 ~n~i~~~~~~~l--~~~----~---------------~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 397 (484)
.|++..--...+ ... + ..++.|+.|.+.+|.+++.....+.. .++|+.|++++|+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~----~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN----FKHLKVLHLSYNR 394 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc----ccceeeeeecccc
Confidence 554332110000 000 0 11234555556666665554433333 2566666666665
Q ss_pred CCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHH----HHHHhCCc-----------cceeEeeccCCcCchhhh
Q 011480 398 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA----QALKANED-----------VAVTSLNLANNFLTKFGQ 462 (484)
Q Consensus 398 i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~----~~l~~~~~-----------~~L~~l~l~~n~i~~~~~ 462 (484)
++.-....+.+. +.|++|+++||+++........ ..+..+.+ .+|+.+|++.|+++....
T Consensus 395 L~~fpas~~~kl-----e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 395 LNSFPASKLRKL-----EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccCCHHHHhch-----HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhh
Confidence 554333333322 4466666666655432211100 00111111 368888999888887666
Q ss_pred hhhhh
Q 011480 463 SALTD 467 (484)
Q Consensus 463 ~~l~~ 467 (484)
..-..
T Consensus 470 ~~~~p 474 (1081)
T KOG0618|consen 470 PEALP 474 (1081)
T ss_pred hhhCC
Confidence 55544
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.60 E-value=3.5e-15 Score=135.36 Aligned_cols=302 Identities=20% Similarity=0.263 Sum_probs=152.2
Q ss_pred CcceEecccCC-CCHHHHHHHHHHhhcCCCCCEEecCCC-CCChhHHHHHHHHHHhCCCcCEEEeecc-CCChHHHHHHH
Q 011480 78 TAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIA 154 (484)
Q Consensus 78 ~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~ 154 (484)
.|++|.+.+|. +.+.....+ ...|+++++|++.++ .+++.....++. .|++|++|++..| .+++...+.++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~---~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF---ASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHH---hhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHHH
Confidence 56666666664 333333333 345666666666664 344444333332 3666666666664 34444333233
Q ss_pred HHHhcCCCccEEEccCC-CCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCC-CCChh
Q 011480 155 ELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDE 232 (484)
Q Consensus 155 ~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~ 232 (484)
+ .+++|++++++.+ .++..+++.+.. .++.++.+...+|. ....+.+...-+.++.+.++++..+ .++++
T Consensus 213 ~---gC~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 213 E---GCRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred H---hhhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccch
Confidence 2 3566666666665 344444444433 23345555555442 2223333333334555555554443 45555
Q ss_pred HHHHHHHhhccCCCcceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEcc
Q 011480 233 GIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLG 310 (484)
Q Consensus 233 ~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~ 310 (484)
++..+..... .++.++.+++. +++. .+...-.++.+|+.|-++.| ++++.+...+.. .++.|+.+++.
T Consensus 285 ~~~~i~~~c~----~lq~l~~s~~t~~~d~---~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e 354 (483)
T KOG4341|consen 285 DLWLIACGCH----ALQVLCYSSCTDITDE---VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLE 354 (483)
T ss_pred HHHHHhhhhh----HhhhhcccCCCCCchH---HHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhccc
Confidence 5444433222 56666666653 2222 12223344566666666666 455554433321 34566666666
Q ss_pred CCCCChhHHHHHHHHhhcCCCcCEEECCCC-CCChhHHHHHHHHHHhCCCcCEEeccCCCC-ChhHHHHHHHHHHcCCCc
Q 011480 311 GNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNNTI 388 (484)
Q Consensus 311 ~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i-~~~~~~~l~~~l~~~~~L 388 (484)
++....++ .+.+.-..|+.|+.+.++.+ .++++++..+.........|..+.+++|.. ++.. .+-+..|++|
T Consensus 355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~----Le~l~~c~~L 428 (483)
T KOG4341|consen 355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT----LEHLSICRNL 428 (483)
T ss_pred ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH----HHHHhhCccc
Confidence 66544433 34444445666666666665 355666665555544555666666666653 2222 2223445666
Q ss_pred cEEEeccC-CCCchhHHHHHHH
Q 011480 389 SILDLRAN-GLRDEGAKCLAQS 409 (484)
Q Consensus 389 ~~L~l~~n-~i~~~~~~~l~~~ 409 (484)
+.+++-++ .++.+++..+...
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhh
Confidence 66666665 5555555555443
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.56 E-value=2.2e-14 Score=130.27 Aligned_cols=321 Identities=19% Similarity=0.183 Sum_probs=223.0
Q ss_pred HHHHHc-ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCC-CCHHHHHHHHHHhhcCCCCCEEecCC-CCCCh
Q 011480 43 EFAKEL-RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSG-NPIGD 119 (484)
Q Consensus 43 ~~~~~~-~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~-~~i~~ 119 (484)
..++++ ..+++|.++++. +.....+.....+|++++.|.+.+|. +++.....++ ..|+.|++|++.. ..+++
T Consensus 131 ~~~~Rcgg~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 131 NMISRCGGFLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred hHhhhhccccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHH
Confidence 334444 358899999865 33334455566789999999999995 7776666665 4577899999988 46777
Q ss_pred hHHHHHHHHHHhCCCcCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCC
Q 011480 120 EGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 198 (484)
Q Consensus 120 ~~~~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~ 198 (484)
..++.+++. |++|++|++++|. +++.+++.+... ++.++.+...+|. +.+...+...-+.+.-+.++++..
T Consensus 206 ~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~rG---~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 206 VSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQRG---CKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HHHHHHHHh---hhhHHHhhhccCchhhcCcchHHhcc---chhhhhhhhcccc--cccHHHHHHHhccChHhhccchhh
Confidence 766666555 7999999999985 555555555443 4557777777652 233355555555567777777666
Q ss_pred C-CCChHHHHHHHHHhhcCCCcCEEEccCCC-CChhHHHHHHHhhccCCCcceEEEccCCC-CChhhHHHHHHHHhcCCC
Q 011480 199 N-YGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKS 275 (484)
Q Consensus 199 ~-~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~ 275 (484)
| .+++.... ..-..+..|+.|..+++. +++..+..+. ..+.+|+.+-+..|. +++.+...+. .+++.
T Consensus 278 c~~lTD~~~~---~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~---rn~~~ 347 (483)
T KOG4341|consen 278 CNQLTDEDLW---LIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLG---RNCPH 347 (483)
T ss_pred hccccchHHH---HHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhh---cCChh
Confidence 5 45655533 333467789999998874 4555444444 455689999999984 6666554433 56889
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCC-CChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHH
Q 011480 276 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 354 (484)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~ 354 (484)
|+.+++..+.....+ .+...-..++.|+.+.+++|. ++++|...+...-.....|+.+.+++++...+. ....+
T Consensus 348 Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~---~Le~l 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA---TLEHL 422 (483)
T ss_pred hhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH---HHHHH
Confidence 999999998554443 244433468999999999985 889999888888788899999999999755433 23444
Q ss_pred HhCCCcCEEeccCCC-CChhHHHHHHHHHHcCCCccEEEec
Q 011480 355 KFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLR 394 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~ 394 (484)
..|++|+.+++.+|. ++..+. ...-.++|+++..-+-
T Consensus 423 ~~c~~Leri~l~~~q~vtk~~i---~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVTKEAI---SRFATHLPNIKVHAYF 460 (483)
T ss_pred hhCcccceeeeechhhhhhhhh---HHHHhhCccceehhhc
Confidence 678999999999986 555444 4444567887776553
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=4.5e-17 Score=146.57 Aligned_cols=151 Identities=23% Similarity=0.285 Sum_probs=89.7
Q ss_pred ceEEEccCCCCChhhHHHHHHHHhcCCCC-cEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 248 LAVLDIGNNSISAKGAFHVAEYIKNCKSL-LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 248 L~~L~l~~~~i~~~~~~~l~~~l~~~~~L-~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
....+++.|.+.. +++.+.....+ +.+.+++|.++- ++..+++.++|..|++++|.+.+- +.-+
T Consensus 390 Vt~VnfskNqL~e-----lPk~L~~lkelvT~l~lsnn~isf-----v~~~l~~l~kLt~L~L~NN~Ln~L-----P~e~ 454 (565)
T KOG0472|consen 390 VTSVNFSKNQLCE-----LPKRLVELKELVTDLVLSNNKISF-----VPLELSQLQKLTFLDLSNNLLNDL-----PEEM 454 (565)
T ss_pred eEEEecccchHhh-----hhhhhHHHHHHHHHHHhhcCcccc-----chHHHHhhhcceeeecccchhhhc-----chhh
Confidence 4456666665544 44444444433 445666666654 455566778888999988876653 2222
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 406 (484)
.+...|+.|+++.|.|.. +..++.....++.+-.++|+++......+..+ .+|..||+.+|.+.... ..+
T Consensus 455 ~~lv~Lq~LnlS~NrFr~-----lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm----~nL~tLDL~nNdlq~IP-p~L 524 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFRM-----LPECLYELQTLETLLASNNQIGSVDPSGLKNM----RNLTTLDLQNNDLQQIP-PIL 524 (565)
T ss_pred hhhhhhheeccccccccc-----chHHHhhHHHHHHHHhccccccccChHHhhhh----hhcceeccCCCchhhCC-hhh
Confidence 233568889998886532 22333333456666666677766555544443 77778888777665432 223
Q ss_pred HHHHHhcCccccEEEcCCCCCC
Q 011480 407 AQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 407 ~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
..+ .+|++|.+.+|+|.
T Consensus 525 gnm-----tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 525 GNM-----TNLRHLELDGNPFR 541 (565)
T ss_pred ccc-----cceeEEEecCCccC
Confidence 333 67788888887765
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.5e-14 Score=122.65 Aligned_cols=196 Identities=14% Similarity=0.206 Sum_probs=128.3
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCC-CCChhHHHHHHHH
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 325 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~ 325 (484)
.++++|++...++.... -..+++|.+|+.|.+.+++++|. +...++.+..|+.|+++.| .++..++..+
T Consensus 186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHH---
Confidence 57888888777766543 33467788888888888888876 5666777788888888876 4776665544
Q ss_pred hhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccC-CCCchhHH
Q 011480 326 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAK 404 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~ 404 (484)
+++|..|.+|++++|....+.+..+...+. ++|+.|+++|+.- .-+...+....+.||+|..||+++| .+++....
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 445788888888888766666665555544 6888888888741 1122345556677888888888887 56664333
Q ss_pred HHHHHHHhcCccccEEEcCCCC-CChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhh
Q 011480 405 CLAQSFKVVNEALTSIDLAFNE-IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 405 ~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
.+.+. +-|++|.++.|. |...-...+... +++.+||+.++- .+...+.+.+
T Consensus 333 ~~~kf-----~~L~~lSlsRCY~i~p~~~~~l~s~------psl~yLdv~g~v-sdt~mel~~e 384 (419)
T KOG2120|consen 333 EFFKF-----NYLQHLSLSRCYDIIPETLLELNSK------PSLVYLDVFGCV-SDTTMELLKE 384 (419)
T ss_pred HHHhc-----chheeeehhhhcCCChHHeeeeccC------cceEEEEecccc-CchHHHHHHH
Confidence 33322 568888888885 444333343333 458888888752 3333444433
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=2.2e-14 Score=156.63 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=99.5
Q ss_pred HHHHHcccceEEeCCCCCCChh--HHHHHHHHhccC-CCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 011480 43 EFAKELRAFSSVDMSGRNFGDE--GLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD 119 (484)
Q Consensus 43 ~~~~~~~~l~~L~ls~~~~~~~--~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~ 119 (484)
..++.+++|+.|.+..+..... .-..++..+... ..|+.|.+.++.+.... ..+ ...+|+.|+++++.+..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-----~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-----SNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-----CcC-CccCCcEEECcCccccc
Confidence 3456678888887765432110 000122222222 35777777776543221 111 23467888887776542
Q ss_pred hHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCC
Q 011480 120 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 199 (484)
Q Consensus 120 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 199 (484)
+...+..+++|+.|+++++..... ++. +..+++|+.|++++|... ..++..+..+++|+.|++++|
T Consensus 626 -----L~~~~~~l~~Lk~L~Ls~~~~l~~----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 626 -----LWDGVHSLTGLRNIDLRGSKNLKE----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred -----cccccccCCCCCEEECCCCCCcCc----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCC
Confidence 222234457788888876542211 111 334577888888776542 445566667778888888776
Q ss_pred CCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCCh
Q 011480 200 YGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 260 (484)
Q Consensus 200 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 260 (484)
..- ..++..+ ++++|+.|++++|..... ++....+|++|++++|.+..
T Consensus 692 ~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~~--------~p~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 692 ENL----EILPTGI-NLKSLYRLNLSGCSRLKS--------FPDISTNISWLDLDETAIEE 739 (1153)
T ss_pred CCc----CccCCcC-CCCCCCEEeCCCCCCccc--------cccccCCcCeeecCCCcccc
Confidence 321 1222222 567778888877743211 11112367777777776543
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=2.4e-13 Score=138.41 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=126.3
Q ss_pred ceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHH
Q 011480 51 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILV 130 (484)
Q Consensus 51 l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~ 130 (484)
-..|+++++.++. ++..+. ++|+.|++.+|+++.. .. ..++|++|++++|.+..- ...
T Consensus 203 ~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsL-----P~l-- 260 (788)
T PRK15387 203 NAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PVL-- 260 (788)
T ss_pred CcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCcc-----cCc--
Confidence 4566666665542 222221 3566666666665421 11 124566666666655421 111
Q ss_pred hCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHH
Q 011480 131 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 210 (484)
Q Consensus 131 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 210 (484)
.++|++|++++|.+.. ++.. .+.|+.|++++|.+.. ++. .+++|+.|++++|.++...
T Consensus 261 -p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp----- 318 (788)
T PRK15387 261 -PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLP----- 318 (788)
T ss_pred -ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCC-----
Confidence 2456666666665543 2211 1346666666666532 111 1245666666666554211
Q ss_pred HHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHH
Q 011480 211 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 290 (484)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~ 290 (484)
. -...|+.|++++|.+.. ++. ...+|++|++++|.+.. ++. ...+|+.|++++|.++.
T Consensus 319 ~---lp~~L~~L~Ls~N~L~~--LP~-------lp~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~-- 376 (788)
T PRK15387 319 A---LPSELCKLWAYNNQLTS--LPT-------LPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS-- 376 (788)
T ss_pred C---CcccccccccccCcccc--ccc-------cccccceEecCCCccCC-----CCC---CCcccceehhhcccccc--
Confidence 0 11245556666665542 111 11256666666666554 221 12345566666665543
Q ss_pred HHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCC
Q 011480 291 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 370 (484)
Q Consensus 291 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i 370 (484)
++.. ...|+.|++++|+++.. ... .++|+.|++++|.+... ..+ ..+|+.|++++|.+
T Consensus 377 ---LP~l---~~~L~~LdLs~N~Lt~L-----P~l---~s~L~~LdLS~N~LssI--P~l------~~~L~~L~Ls~NqL 434 (788)
T PRK15387 377 ---LPAL---PSGLKELIVSGNRLTSL-----PVL---PSELKELMVSGNRLTSL--PML------PSGLLSLSVYRNQL 434 (788)
T ss_pred ---Cccc---ccccceEEecCCcccCC-----CCc---ccCCCEEEccCCcCCCC--Ccc------hhhhhhhhhccCcc
Confidence 1111 13566666666665531 111 24566666666655421 111 12455566666665
Q ss_pred ChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHH
Q 011480 371 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406 (484)
Q Consensus 371 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 406 (484)
+. ++..+..++.|+.|++++|++++..+..+
T Consensus 435 t~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 435 TR-----LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cc-----cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 42 22333344566666666666665544444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.2e-13 Score=140.55 Aligned_cols=279 Identities=16% Similarity=0.129 Sum_probs=183.4
Q ss_pred hHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeecc
Q 011480 64 EGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV 143 (484)
Q Consensus 64 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 143 (484)
..+..+..++. ..-..|+++.+.++.. ...+. ++|+.|++++|.++.- .. ..++|++|++++|
T Consensus 190 ~a~~r~~~Cl~--~~~~~LdLs~~~LtsL-----P~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N 252 (788)
T PRK15387 190 AVVQKMRACLN--NGNAVLNVGESGLTTL-----PDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGN 252 (788)
T ss_pred HHHHHHHHHhc--CCCcEEEcCCCCCCcC-----Ccchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCC
Confidence 34555666654 4566889998887632 21111 3689999998887642 11 1478999999999
Q ss_pred CCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEE
Q 011480 144 DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 223 (484)
Q Consensus 144 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~ 223 (484)
+++.. +. ..++|+.|++++|.+. .++.. ...|+.|++++|.++... . ..++|+.|+
T Consensus 253 ~LtsL-----P~---lp~sL~~L~Ls~N~L~-----~Lp~l---p~~L~~L~Ls~N~Lt~LP-----~---~p~~L~~Ld 308 (788)
T PRK15387 253 QLTSL-----PV---LPPGLLELSIFSNPLT-----HLPAL---PSGLCKLWIFGNQLTSLP-----V---LPPGLQELS 308 (788)
T ss_pred ccCcc-----cC---cccccceeeccCCchh-----hhhhc---hhhcCEEECcCCcccccc-----c---cccccceeE
Confidence 88753 11 1257899999998874 33321 357888999988876322 1 236799999
Q ss_pred ccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCC
Q 011480 224 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT 303 (484)
Q Consensus 224 l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~ 303 (484)
+++|.+..- +. ....|+.|++++|.+.. ++. ...+|+.|++++|.++. ++. ....
T Consensus 309 LS~N~L~~L--p~-------lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~---lp~~ 363 (788)
T PRK15387 309 VSDNQLASL--PA-------LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPT---LPSE 363 (788)
T ss_pred CCCCccccC--CC-------CcccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCC---CCcc
Confidence 999887642 11 12268888898888775 332 11468899999998875 222 1357
Q ss_pred ccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHH
Q 011480 304 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 383 (484)
Q Consensus 304 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 383 (484)
|+.|++++|+++. +... ..+|+.|++++|.++... . ..++|+.|++++|.++... ..
T Consensus 364 L~~L~Ls~N~L~~-----LP~l---~~~L~~LdLs~N~Lt~LP--~------l~s~L~~LdLS~N~LssIP-----~l-- 420 (788)
T PRK15387 364 LYKLWAYNNRLTS-----LPAL---PSGLKELIVSGNRLTSLP--V------LPSELKELMVSGNRLTSLP-----ML-- 420 (788)
T ss_pred cceehhhcccccc-----Cccc---ccccceEEecCCcccCCC--C------cccCCCEEEccCCcCCCCC-----cc--
Confidence 8888899888774 2222 257899999998876321 1 1257889999999886532 11
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHH
Q 011480 384 YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 438 (484)
Q Consensus 384 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 438 (484)
..+|+.|++++|.++.. ...+... +.|+.|++++|+++......+...
T Consensus 421 -~~~L~~L~Ls~NqLt~L-P~sl~~L-----~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 -PSGLLSLSVYRNQLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -hhhhhhhhhccCccccc-ChHHhhc-----cCCCeEECCCCCCCchHHHHHHHH
Confidence 13578889999888753 2223322 678899999999887766666444
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=3.4e-13 Score=138.06 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=8.3
Q ss_pred cccEEEcCCCCCChhHHH
Q 011480 416 ALTSIDLAFNEIRDDGAF 433 (484)
Q Consensus 416 ~L~~L~l~~n~i~~~~~~ 433 (484)
.+..|++.+|+++.....
T Consensus 416 ~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 416 QPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred CccEEEeeCCCccHHHHH
Confidence 344555555555443333
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-12 Score=113.97 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=163.0
Q ss_pred CccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhc-CCCcCEEEccCCCCChhHHHHHHHh
Q 011480 162 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG-NKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
.-+.+|+.+-.+.+.....+.. .....+.+....+.+. .++..+.- -..|++++++...++...+..+...
T Consensus 137 lW~~lDl~~r~i~p~~l~~l~~-----rgV~v~Rlar~~~~~p---rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~ 208 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHPDVLGRLLS-----RGVIVFRLARSFMDQP---RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQ 208 (419)
T ss_pred ceeeeccCCCccChhHHHHHHh-----CCeEEEEcchhhhcCc---hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHH
Confidence 4567777777776655555432 3445555543332221 12222211 2358888888888887766666543
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHH
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 319 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 319 (484)
. .+|+.|.+.++.+++. +...+....+|+.|+++.+ .++..++..+ +..++.|..|+++.|.++.+.+
T Consensus 209 C----~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll---~~scs~L~~LNlsWc~l~~~~V 277 (419)
T KOG2120|consen 209 C----SKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL---LSSCSRLDELNLSWCFLFTEKV 277 (419)
T ss_pred H----HhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHH---HHhhhhHhhcCchHhhccchhh
Confidence 3 3788888888888886 6666778888999999886 7887766554 4467888999999998887777
Q ss_pred HHHHHHhhcCCCcCEEECCCC--CCChhHHHHHHHHHHhCCCcCEEeccCCC-CChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 320 SAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 320 ~~l~~~l~~~~~L~~L~ls~n--~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
..+...++ ++|+.|+++|+ ++... .+......||+|.+||++.|- +++.-...+.+ .+-|+.|.++-|
T Consensus 278 tv~V~his--e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k----f~~L~~lSlsRC 348 (419)
T KOG2120|consen 278 TVAVAHIS--ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK----FNYLQHLSLSRC 348 (419)
T ss_pred hHHHhhhc--hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCchHHHHHHh----cchheeeehhhh
Confidence 76666554 88899999887 34333 444455678899999999875 66644444444 488999999888
Q ss_pred C-CCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHH
Q 011480 397 G-LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 439 (484)
Q Consensus 397 ~-i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l 439 (484)
+ |....+..+.. .++|..|++-++ +.|...+.+.+++
T Consensus 349 Y~i~p~~~~~l~s-----~psl~yLdv~g~-vsdt~mel~~e~~ 386 (419)
T KOG2120|consen 349 YDIIPETLLELNS-----KPSLVYLDVFGC-VSDTTMELLKEML 386 (419)
T ss_pred cCCChHHeeeecc-----CcceEEEEeccc-cCchHHHHHHHhC
Confidence 4 44443333322 278899999886 5676777776663
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=9.1e-13 Score=134.99 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=98.1
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
.+|++|++++|.++.. +..+. +.|+.|++++|.+.. ++..+ ..+|+.|++++|.++.. +..
T Consensus 220 ~nL~~L~Ls~N~LtsL-----P~~l~--~~L~~L~Ls~N~L~~-----LP~~l--~s~L~~L~Ls~N~L~~L-----P~~ 280 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-----PATLP--DTIQEMELSINRITE-----LPERL--PSALQSLDLFHNKISCL-----PEN 280 (754)
T ss_pred cCCCEEECCCCccccC-----Chhhh--ccccEEECcCCccCc-----CChhH--hCCCCEEECcCCccCcc-----ccc
Confidence 3455555555554431 11111 245555555555431 12221 13455555555554421 111
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 292 (484)
+ .++|+.|++++|.+..- + ..+. ..|+.|++++|.+.. ++..+ .++|+.|++++|.++.
T Consensus 281 l--~~sL~~L~Ls~N~Lt~L--P---~~lp---~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~---- 339 (754)
T PRK15370 281 L--PEELRYLSVYDNSIRTL--P---AHLP---SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS---- 339 (754)
T ss_pred c--CCCCcEEECCCCccccC--c---ccch---hhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc----
Confidence 1 13566666666555421 0 0011 145556666665553 11111 2356666666665543
Q ss_pred HHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCCh
Q 011480 293 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 372 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 372 (484)
++..+ .++|+.|++++|+++.. ...+ .++|+.|++++|.+... ...+ . ..|+.|++++|.+..
T Consensus 340 -LP~~l--~~sL~~L~Ls~N~L~~L-----P~~l--p~~L~~LdLs~N~Lt~L-P~~l----~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 340 -LPASL--PPELQVLDVSKNQITVL-----PETL--PPTITTLDVSRNALTNL-PENL----P--AALQIMQASRNNLVR 402 (754)
T ss_pred -CChhh--cCcccEEECCCCCCCcC-----Chhh--cCCcCEEECCCCcCCCC-CHhH----H--HHHHHHhhccCCccc
Confidence 22222 24666666666665531 1111 14666666666655431 1111 1 245666666666553
Q ss_pred hHHHHHHHHHHcCCCccEEEeccCCCCchhHH
Q 011480 373 SGAEFVADMLRYNNTISILDLRANGLRDEGAK 404 (484)
Q Consensus 373 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 404 (484)
. ...+.......+.+..|++.+|.++...+.
T Consensus 403 L-P~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 403 L-PESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred C-chhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 2 223344444456666666666666654433
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=1.1e-12 Score=143.50 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=151.4
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCC-CChhHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCD 127 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-i~~~~~~~l~~ 127 (484)
++|+.|++.++.+..- +..+ ...+|++|+++++.+.. +...+..+++|+.|+|+++. +... .
T Consensus 589 ~~Lr~L~~~~~~l~~l-----P~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCM-----PSNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEI-----P- 651 (1153)
T ss_pred cccEEEEecCCCCCCC-----CCcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcC-----C-
Confidence 4588888887765432 2222 34788999998887642 33334567789999998753 3221 1
Q ss_pred HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHH
Q 011480 128 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 128 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
.+..+++|++|++++|.... .++..+..+++|+.|++++|..- ..++..+ .+++|+.|++++|....
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~---- 718 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRLK---- 718 (1153)
T ss_pred ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCcc----
Confidence 13446888999998875432 24455666788999999887431 2233222 56788888888874321
Q ss_pred HHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChh--hHHH-HHHHHhcCCCCcEEEcCCC
Q 011480 208 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAFH-VAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 208 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~--~~~~-l~~~l~~~~~L~~L~l~~~ 284 (484)
.++. ...+|++|+++++.+.. ++.. + ...+|++|++.++..... .... .+......++|+.|++++|
T Consensus 719 ~~p~---~~~nL~~L~L~~n~i~~--lP~~---~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 719 SFPD---ISTNISWLDLDETAIEE--FPSN---L--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred cccc---ccCCcCeeecCCCcccc--cccc---c--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 1221 23567888888776543 1111 0 112455555554321100 0000 0001112345666666665
Q ss_pred CCCcHHHHHHHHHHHhCCCccEEEccCCC-CChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEE
Q 011480 285 DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 363 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L 363 (484)
..... ++..+..+++|+.|++++|. +.. ++..+ .+++|+.|++++|..-.. +.. ..++|+.|
T Consensus 789 ~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~~nL~~L 851 (1153)
T PLN03210 789 PSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI-NLESLESLDLSGCSRLRT----FPD---ISTNISDL 851 (1153)
T ss_pred CCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC-CccccCEEECCCCCcccc----ccc---cccccCEe
Confidence 33222 33445556666666666653 221 11111 346666666666532110 100 12456666
Q ss_pred eccCCCCChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 364 KLGWCQIGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 364 ~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
++++|.+.. ++..+...++|+.|++++|
T Consensus 852 ~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 852 NLSRTGIEE-----VPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred ECCCCCCcc-----ChHHHhcCCCCCEEECCCC
Confidence 666666543 2333444566666666664
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=4.6e-13 Score=120.86 Aligned_cols=375 Identities=18% Similarity=0.222 Sum_probs=207.6
Q ss_pred cccccchhhHHHHHHHHHHcc-cceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCC
Q 011480 29 FTGKLFRESKQTLNEFAKELR-AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 29 ~~~~~~~~~~~~l~~~~~~~~-~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 107 (484)
..+.+.+++.+++.++-..+| +.+++.|..|+|....- .+|+..++|++|+|+.|.++..+..+|... +++
T Consensus 46 ~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l 117 (498)
T KOG4237|consen 46 VEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPP----GAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASL 117 (498)
T ss_pred CCCceEEccCCCcccCcccCCCcceEEEeccCCcccCCh----hhccchhhhceecccccchhhcChHhhhhh----Hhh
Confidence 345566667777777777774 47788998888876543 344566899999999998876666655433 345
Q ss_pred CEEecCC-CCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHH-HH
Q 011480 108 KTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-AL 185 (484)
Q Consensus 108 ~~L~L~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l 185 (484)
.+|-+.+ |.|.+-.-..+.. ...++.|.+.-|.+.-.-..++.+ ++.+..|.+.+|.+ +.+++ .+
T Consensus 118 ~~Lvlyg~NkI~~l~k~~F~g----L~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~-----q~i~~~tf 184 (498)
T KOG4237|consen 118 LSLVLYGNNKITDLPKGAFGG----LSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKI-----QSICKGTF 184 (498)
T ss_pred hHHHhhcCCchhhhhhhHhhh----HHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhh-----hhhccccc
Confidence 5555555 8887654333333 366777777777776654444444 47888888888876 44444 34
Q ss_pred hcCCCccEEEcCCCCCC-hH-------HHHHHHHHhhcCCCcCEEEccCCC-------------------------CChh
Q 011480 186 LENSTIRSLHLNGNYGG-AL-------GANALAKGLEGNKSLRELHLHGNS-------------------------IGDE 232 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~-~~-------~~~~l~~~l~~~~~L~~L~l~~~~-------------------------l~~~ 232 (484)
.....++.+.+..+.+- +- .....+..+....-..-..+.+.. ....
T Consensus 185 ~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~ 264 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSI 264 (498)
T ss_pred cchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCc
Confidence 44556666666554311 00 000000000111111111111111 1111
Q ss_pred HHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCC
Q 011480 233 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 312 (484)
Q Consensus 233 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 312 (484)
.....+ ...++|+.|++++|+++.. -..++.....+++|.|..|++.... ...+..+..|++|+|.+|
T Consensus 265 cP~~cf----~~L~~L~~lnlsnN~i~~i----~~~aFe~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 265 CPAKCF----KKLPNLRKLNLSNNKITRI----EDGAFEGAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred ChHHHH----hhcccceEeccCCCccchh----hhhhhcchhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCC
Confidence 111111 1224778888888877764 2234556667777777777664321 123445678888888888
Q ss_pred CCChhHHHHHHHHhhcCCCcCEEECCCCCCChh-HHHHHHHHHHhC-----------CCcCEEeccCCCCCh---hHH--
Q 011480 313 NIHSKGASAIARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFH-----------GNINTLKLGWCQIGA---SGA-- 375 (484)
Q Consensus 313 ~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~-~~~~l~~~~~~~-----------~~L~~L~l~~~~i~~---~~~-- 375 (484)
+|+...... +.....|.+|++-.|++.-. .+.++.+++.+. ..++.+.++...+++ .+.
T Consensus 333 ~it~~~~~a----F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee 408 (498)
T KOG4237|consen 333 QITTVAPGA----FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE 408 (498)
T ss_pred eeEEEeccc----ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc
Confidence 888754333 44447888888888776533 245555555321 133445554432211 010
Q ss_pred -------------HHHHHHHH-cCCC-----------ccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh
Q 011480 376 -------------EFVADMLR-YNNT-----------ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 430 (484)
Q Consensus 376 -------------~~l~~~l~-~~~~-----------L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 430 (484)
..+....+ .+.. -.++++.+|.++...... + ..| .+++++|+|..-
T Consensus 409 ~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~~----~----~~l-~~dls~n~i~~L 479 (498)
T KOG4237|consen 409 LGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDEL----L----RSL-LLDLSNNRISSL 479 (498)
T ss_pred cCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHHH----H----hhh-hcccccCceehh
Confidence 01111111 1112 234677788777654441 1 447 899999998876
Q ss_pred HHHHHHHHHHhCCccceeEeeccCC
Q 011480 431 GAFAIAQALKANEDVAVTSLNLANN 455 (484)
Q Consensus 431 ~~~~l~~~l~~~~~~~L~~l~l~~n 455 (484)
.-..+..+ .++..+-+++|
T Consensus 480 sn~tf~n~------tql~tlilsyn 498 (498)
T KOG4237|consen 480 SNYTFSNM------TQLSTLILSYN 498 (498)
T ss_pred hcccccch------hhhheeEEecC
Confidence 66666666 34677766654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-12 Score=118.99 Aligned_cols=242 Identities=19% Similarity=0.132 Sum_probs=116.0
Q ss_pred EEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhC
Q 011480 53 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 132 (484)
Q Consensus 53 ~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~ 132 (484)
.+.+++-++.-.+++.++.--++...|+++.+.++.+.+.+.. ...+.|++++.|||++|-+.. +..++....++
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqL 171 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQL 171 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhc
Confidence 3444444444445555554444455555555555555444333 233444555555555554321 22233333334
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
++|+.|+++.|.+.. -.-..... ..++|+.|.++.|+++-.. +...
T Consensus 172 p~Le~LNls~Nrl~~----------------------------~~~s~~~~---~l~~lK~L~l~~CGls~k~---V~~~ 217 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSN----------------------------FISSNTTL---LLSHLKQLVLNSCGLSWKD---VQWI 217 (505)
T ss_pred ccchhcccccccccC----------------------------Cccccchh---hhhhhheEEeccCCCCHHH---HHHH
Confidence 555555555544321 10000111 1345666666666665332 3344
Q ss_pred hhcCCCcCEEEccCCC-CChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 213 LEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
+..+|+|+.|++.+|. +... .....+ ...|++||+++|.+-+... ...+..++.|..|+++.+.+.+-..
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~---~~~~~i---~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~ 288 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIK---ATSTKI---LQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAE 288 (505)
T ss_pred HHhCCcHHHhhhhccccccee---cchhhh---hhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcC
Confidence 4566777777776663 2111 111111 1156777777765554211 1234566677777777666654211
Q ss_pred HHH--HHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh
Q 011480 292 EKI--ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345 (484)
Q Consensus 292 ~~l--~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~ 345 (484)
... .......++|++|++..|++.+.. ....+...++|+.|.+..|+++.+
T Consensus 289 ~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 289 PDVESLDKTHTFPKLEYLNISENNIRDWR---SLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred CCccchhhhcccccceeeecccCcccccc---ccchhhccchhhhhhccccccccc
Confidence 000 001223467777777777765421 112234446777777777766543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.5e-13 Score=121.07 Aligned_cols=233 Identities=17% Similarity=0.131 Sum_probs=150.6
Q ss_pred cchhhHHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEec
Q 011480 33 LFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 112 (484)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L 112 (484)
+.-..++.+..--+.++.|+++.|.++.+.+.... .....|++++.|+++.|-+. .|..++++....|+|+.|++
T Consensus 105 vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 105 VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSLENLNL 179 (505)
T ss_pred eEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccchhccc
Confidence 44555666666666788899999999988776544 45567899999999999764 37788888899999999999
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCC-CCchHHHHHHHHHhcCCCc
Q 011480 113 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTI 191 (484)
Q Consensus 113 ~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L 191 (484)
+.|.+....-...... .+.|+.|.++.|+++... +...+..+|+|+.|++..|. +.. . ......++.|
T Consensus 180 s~Nrl~~~~~s~~~~~---l~~lK~L~l~~CGls~k~---V~~~~~~fPsl~~L~L~~N~~~~~---~--~~~~~i~~~L 248 (505)
T KOG3207|consen 180 SSNRLSNFISSNTTLL---LSHLKQLVLNSCGLSWKD---VQWILLTFPSLEVLYLEANEIILI---K--ATSTKILQTL 248 (505)
T ss_pred ccccccCCccccchhh---hhhhheEEeccCCCCHHH---HHHHHHhCCcHHHhhhhcccccce---e--cchhhhhhHH
Confidence 9987643211112222 378899999999999654 44555568999999999984 221 1 1122235688
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHH-HhhccCCCcceEEEccCCCCChhhHHHHHHHH
Q 011480 192 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 270 (484)
Q Consensus 192 ~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l 270 (484)
++|+|++|.+-.... ......++.|+.|+++.+.+.+-...... .......++|++|++..|.+.+-. ....+
T Consensus 249 ~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~~l 322 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLNHL 322 (505)
T ss_pred hhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccchh
Confidence 999999987644321 14456788899999888876542211110 000012236667777666664410 11233
Q ss_pred hcCCCCcEEEcCCCCCC
Q 011480 271 KNCKSLLWINLYMNDIG 287 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~ 287 (484)
...++|+.|.+..+.++
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 44455555555555444
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=9.1e-12 Score=112.60 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=78.3
Q ss_pred HHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHH
Q 011480 298 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 377 (484)
Q Consensus 298 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~ 377 (484)
+..+++|+.|++++|+++......+..+ ..+++|.|..|.+....- .++.....|+.|+|++|.|+...+.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~----~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSS----GMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHH----HhhhccccceeeeecCCeeEEEeccc
Confidence 5667888888888888887655444444 788888888886543222 22233468888888888887766665
Q ss_pred HHHHHHcCCCccEEEeccCCC-CchhHHHHHHHHHhc----------CccccEEEcCCCCCChh
Q 011480 378 VADMLRYNNTISILDLRANGL-RDEGAKCLAQSFKVV----------NEALTSIDLAFNEIRDD 430 (484)
Q Consensus 378 l~~~l~~~~~L~~L~l~~n~i-~~~~~~~l~~~~~~~----------~~~L~~L~l~~n~i~~~ 430 (484)
|... ..|..|++-.|.+ -+.-+..+.+.+++. ...++.+.++++.+.+.
T Consensus 342 F~~~----~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~ 401 (498)
T KOG4237|consen 342 FQTL----FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDF 401 (498)
T ss_pred cccc----ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccc
Confidence 5544 6788888877754 344555666655432 12455777777766654
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=4.1e-12 Score=101.71 Aligned_cols=155 Identities=23% Similarity=0.323 Sum_probs=110.2
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
.+++.|.+++|+++... ..+++. .+|+.|++++|++ ..++..+..++.|+.|+++-|++. .+++.
T Consensus 33 s~ITrLtLSHNKl~~vp-pnia~l----~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-----~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVP-PNIAEL----KNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-----ILPRG 97 (264)
T ss_pred hhhhhhhcccCceeecC-CcHHHh----hhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-----cCccc
Confidence 55677777777766421 234443 6788888888876 566777777888888888766553 45677
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 292 (484)
++.+|.|+.|++++|.+....++.-+..+. .|+.|+++.|.+.- ++.-++++++|+.|.+..|.+-.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~----tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~---- 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMT----TLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLS---- 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHH----HHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhh----
Confidence 888888999999888877655443333332 57788888886654 66677888899999988876543
Q ss_pred HHHHHHHhCCCccEEEccCCCCCh
Q 011480 293 KIADALKQNRTITTIDLGGNNIHS 316 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~~ 316 (484)
++..++.++.|+.|.+.+|+++.
T Consensus 165 -lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -CcHHHHHHHHHHHHhcccceeee
Confidence 55666677889999999998764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=1.3e-09 Score=91.13 Aligned_cols=83 Identities=28% Similarity=0.331 Sum_probs=21.8
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHH-HhCCCccEEEccCCCCChhHHHHHHHH
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
+++.|++++|.+..- ..+..+++|++|++++|.+++- ...+ ..++.|++|++++|+|.+... ...
T Consensus 43 ~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i-----~~~l~~~lp~L~~L~L~~N~I~~l~~---l~~ 108 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSI-----SEGLDKNLPNLQELYLSNNKISDLNE---LEP 108 (175)
T ss_dssp T--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHHHH-TT--EEE-TTS---SCCC---CGG
T ss_pred CCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcc-----ccchHHhCCcCCEEECcCCcCCChHH---hHH
Confidence 455555555555541 1233445555555555555431 1111 123455555555555443211 122
Q ss_pred hhcCCCcCEEECCCCCCC
Q 011480 326 LKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~ 343 (484)
+..+++|+.|++.+|+++
T Consensus 109 L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGG-TT--EEE-TT-GGG
T ss_pred HHcCCCcceeeccCCccc
Confidence 334455555555555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2e-09 Score=90.03 Aligned_cols=128 Identities=22% Similarity=0.249 Sum_probs=44.8
Q ss_pred cceEEEccCCCCChhhHHHHHHHHh-cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHH
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
++++|++.+|.|.. +. .+. .+.+|+.|++++|.++. + ..+..++.|++|++++|+|+..+. .+.
T Consensus 20 ~~~~L~L~~n~I~~-----Ie-~L~~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i~~-~l~-- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----IE-NLGATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSISE-GLD-- 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHH--
T ss_pred cccccccccccccc-----cc-chhhhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcccc-chH--
Confidence 56777777777665 22 233 45678888888887765 1 234556788888888888776321 111
Q ss_pred hhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEec
Q 011480 326 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 394 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~ 394 (484)
..+|+|++|.+++|.|.+... ...+..+++|+.|++.+|.+++.. ..-.-.+..+|+|+.||-.
T Consensus 85 -~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 -KNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETTE
T ss_pred -HhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcChhheeCCE
Confidence 235788888888887755321 123345678888888888776432 2223345566888888754
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=4.4e-10 Score=98.32 Aligned_cols=126 Identities=25% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHH
Q 011480 275 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 354 (484)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~ 354 (484)
-|+++|+++|.++. +-..+.-.+.++.|++++|.+...+ .+...++|..||+|+|.++. +..+-
T Consensus 285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~-----~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAE-----CVGWH 348 (490)
T ss_pred hhhhccccccchhh-----hhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHh-----hhhhH
Confidence 35555665554432 2223333455666666666555421 12333666666666664432 11122
Q ss_pred HhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch-hHHHHHHHHHhcCccccEEEcCCCCC
Q 011480 355 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE-GAKCLAQSFKVVNEALTSIDLAFNEI 427 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~~~~~~L~~L~l~~n~i 427 (484)
.+..+++.|.+++|.+.+. ..+.+.-+|..||+++|+|..- .+..+... +.|+.+.+.+|.+
T Consensus 349 ~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCc
Confidence 2334666666666654331 1122234566666666655431 11111111 4566666666653
No 37
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.81 E-value=6e-11 Score=95.08 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=82.9
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
.++.|.++.|+++. ++..+..+.+|+.|++.+|++.+ ++..++.+++|+.|+++-|++.. +.+.+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Ccccc
Confidence 34555566665554 34445555666666666666654 45555566666776666655432 45556
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 406 (484)
...|.|+.||+++|++++..+..-.- ..+.|..|.++.|++. .++.-+.+..+|+.|.+.+|.+-.- ...+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff---~m~tlralyl~dndfe-----~lp~dvg~lt~lqil~lrdndll~l-pkei 169 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFF---YMTTLRALYLGDNDFE-----ILPPDVGKLTNLQILSLRDNDLLSL-PKEI 169 (264)
T ss_pred CCCchhhhhhccccccccccCCcchh---HHHHHHHHHhcCCCcc-----cCChhhhhhcceeEEeeccCchhhC-cHHH
Confidence 66677777777777665543221111 1134555566666542 2333344446666666666644321 2233
Q ss_pred HHHHHhcCccccEEEcCCCCCC
Q 011480 407 AQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 407 ~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
... ..|++|.|++|+++
T Consensus 170 g~l-----t~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 170 GDL-----TRLRELHIQGNRLT 186 (264)
T ss_pred HHH-----HHHHHHhcccceee
Confidence 333 44677777777654
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.68 E-value=3.2e-07 Score=92.28 Aligned_cols=243 Identities=25% Similarity=0.322 Sum_probs=125.6
Q ss_pred CCCccEEEccCC-CCCchHHHHHHHHHhcCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCcCEEEccCCC-CChhHHHH
Q 011480 160 NSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSLHLNGN-YGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGIRA 236 (484)
Q Consensus 160 ~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~ 236 (484)
++.|+.+.+.++ .+.+.+ +......++.|+.|+++++ ................+++|+.|+++.+. +++.++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 566666666665 343332 3333445667777776652 11111111111233456677777777765 66666655
Q ss_pred HHHhhccCCCcceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEccCCC-
Q 011480 237 LMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNN- 313 (484)
Q Consensus 237 ~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~- 313 (484)
+... ++.|++|.+.+|. +++.++..+ ...|+.|++|+++.| .+++.++..+.. .++.|+.|.+....
T Consensus 264 l~~~----c~~L~~L~l~~c~~lt~~gl~~i---~~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~~l~~l~~~~~~~ 333 (482)
T KOG1947|consen 264 LASR----CPNLETLSLSNCSNLTDEGLVSI---AERCPSLRELDLSGCHGLTDSGLEALLK---NCPNLRELKLLSLNG 333 (482)
T ss_pred HHhh----CCCcceEccCCCCccchhHHHHH---HHhcCcccEEeeecCccchHHHHHHHHH---hCcchhhhhhhhcCC
Confidence 5543 3367777766665 566554333 455666777777776 445555544422 24555554433322
Q ss_pred ---CChhHHHH---------HHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCC-CChhHHHHHHH
Q 011480 314 ---IHSKGASA---------IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVAD 380 (484)
Q Consensus 314 ---l~~~~~~~---------l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~ 380 (484)
++...+.. .......++.++.+.+.++..++.+. .+.+.+|. ++ .+ +..
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~---l~~ 395 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ES---LEL 395 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hH---HHH
Confidence 22222211 11123445666666666655444332 22233332 21 11 222
Q ss_pred HHHcCCCccEEEeccC-CCCchhHHHHHHHHHhcCccccEEEcCCCC-CChhHHHHHHH
Q 011480 381 MLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFNE-IRDDGAFAIAQ 437 (484)
Q Consensus 381 ~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~ 437 (484)
....+..++.|+++.+ ..++.++....... .++..+++.++. ++......+..
T Consensus 396 ~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 396 RLCRSDSLRVLNLSDCRLVTDKGLRCLADSC----SNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred HhccCCccceEecccCccccccchHHHhhhh----hccccCCccCcccccchhhhhhhc
Confidence 2223344788999888 57777777665531 567888888875 55555444433
No 39
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.60 E-value=1.3e-06 Score=87.90 Aligned_cols=242 Identities=23% Similarity=0.273 Sum_probs=118.6
Q ss_pred CCCccEEEcCCC-CCChHHHHHHHHHhhcCCCcCEEEccCC--CCChhHHHHHHHhhccCCCcceEEEccCCC-CChhhH
Q 011480 188 NSTIRSLHLNGN-YGGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGA 263 (484)
Q Consensus 188 ~~~L~~L~l~~~-~~~~~~~~~l~~~l~~~~~L~~L~l~~~--~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~ 263 (484)
++.|+.+.+.++ .++... +......++.|++|+++++ .......... .+...+.+++.++++.+. +++.++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhH
Confidence 567777777665 333222 3344556777777777662 1111111111 122233467777777766 666554
Q ss_pred HHHHHHHhcCCCCcEEEcCCCC-CCcHHHHHHHHHHHhCCCccEEEccCCC-CChhHHHHHHHHhhcCCCcCEEECCCCC
Q 011480 264 FHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNP 341 (484)
Q Consensus 264 ~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~ls~n~ 341 (484)
..+. ..|++|+.|.+.+|. +++.++..+.. .++.|++|++++|. +++.++..+. ..|++|+.|.+....
T Consensus 262 ~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~---~~~~L~~L~l~~c~~~~d~~l~~~~---~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 262 SALA---SRCPNLETLSLSNCSNLTDEGLVSIAE---RCPSLRELDLSGCHGLTDSGLEALL---KNCPNLRELKLLSLN 332 (482)
T ss_pred HHHH---hhCCCcceEccCCCCccchhHHHHHHH---hcCcccEEeeecCccchHHHHHHHH---HhCcchhhhhhhhcC
Confidence 4443 236677777766664 67766555443 34567777777664 3344444442 225555555443332
Q ss_pred ----CChhHHHHHH---------HHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccC-CCCchhHHHHH
Q 011480 342 ----IGADGAKALS---------EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLA 407 (484)
Q Consensus 342 ----i~~~~~~~l~---------~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~ 407 (484)
+++.++.... .....+++++.+.+.++..++.+. .+.+.+| .++ .++....
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~l~~~~ 397 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ESLELRL 397 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hHHHHHh
Confidence 2222211111 111223344444444333222211 1122222 122 2222211
Q ss_pred HHHHhcCccccEEEcCCCC-CChhHHHHHHHHHHhCCccceeEeeccCC-cCchhhhhhhhh
Q 011480 408 QSFKVVNEALTSIDLAFNE-IRDDGAFAIAQALKANEDVAVTSLNLANN-FLTKFGQSALTD 467 (484)
Q Consensus 408 ~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~~~L~~l~l~~n-~i~~~~~~~l~~ 467 (484)
.. ...++.|+++.+. +++..+...... +. .+..+++.++ .++..+...+..
T Consensus 398 ~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~~--~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 398 CR----SDSLRVLNLSDCRLVTDKGLRCLADS---CS--NLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred cc----CCccceEecccCccccccchHHHhhh---hh--ccccCCccCcccccchhhhhhhc
Confidence 11 1238999999986 777777777654 23 3788888886 455555544433
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=8.8e-08 Score=84.07 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=56.0
Q ss_pred cCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHH
Q 011480 219 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 298 (484)
Q Consensus 219 L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 298 (484)
++-|.+.++.+..++....+.. .+..++++|+.+|.+++ +..+...+.++|.|+.|+++.|.+... +..+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-----I~~l 116 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-----IKSL 116 (418)
T ss_pred hhhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-----cccC
Confidence 3344555555544433222221 22256666666666665 233555566666666666666666543 1112
Q ss_pred -HhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCC
Q 011480 299 -KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 340 (484)
Q Consensus 299 -~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n 340 (484)
....+|+.|-+.++.+.......+ +...|.+++|.+|.|
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~---l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSS---LDDLPKVTELHMSDN 156 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhh---hhcchhhhhhhhccc
Confidence 123566666666666654443332 333466666666665
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=3.1e-08 Score=86.91 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=135.3
Q ss_pred HHHHHHhhcCCCCCEEecCCC--CCChhHH--HHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccC
Q 011480 95 KAFDGVLQSNIALKTLNLSGN--PIGDEGV--KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN 170 (484)
Q Consensus 95 ~~l~~~l~~~~~L~~L~L~~~--~i~~~~~--~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 170 (484)
..|..++..+.+|..|..++. +++...+ ..+.-.+..+.+|+.+.++.|.-. .+......-|.|.++.+.+
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-----~i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-----NIVDIELLKPTLQTICVHN 246 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-----heeceeecCchhheeeeec
Confidence 345556666677888888764 3332211 111112233477888888877421 2333333346777777766
Q ss_pred CCCCchHH----HHHHH---------------HHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCCh
Q 011480 171 NMIDYSGF----TSLAE---------------ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 231 (484)
Q Consensus 171 ~~l~~~~~----~~l~~---------------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 231 (484)
..+++... ..+.+ .+-.-+.|+++++++|.++... ..+.-.|.++.|+++.|.+..
T Consensus 247 s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-----ESvKL~Pkir~L~lS~N~i~~ 321 (490)
T KOG1259|consen 247 TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-----ESVKLAPKLRRLILSQNRIRT 321 (490)
T ss_pred ccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-----hhhhhccceeEEeccccceee
Confidence 54432110 00000 0111236888899998776433 345567899999999998765
Q ss_pred hHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccC
Q 011480 232 EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 311 (484)
Q Consensus 232 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~ 311 (484)
.+ . .+.+ ++|+.||+++|.++. +..+-..+.++++|.++.|.+.+ + .++..+-+|..||+++
T Consensus 322 v~--n-La~L----~~L~~LDLS~N~Ls~-----~~Gwh~KLGNIKtL~La~N~iE~-----L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 322 VQ--N-LAEL----PQLQLLDLSGNLLAE-----CVGWHLKLGNIKTLKLAQNKIET-----L-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred eh--h-hhhc----ccceEeecccchhHh-----hhhhHhhhcCEeeeehhhhhHhh-----h-hhhHhhhhheeccccc
Confidence 32 2 2222 379999999998776 33345567889999999887754 2 2455667899999999
Q ss_pred CCCChhHHHHHHHHhhcCCCcCEEECCCCCCCh
Q 011480 312 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 344 (484)
Q Consensus 312 ~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~ 344 (484)
|+|..- . -.+.+.+.|.|+.+.+.+|++..
T Consensus 384 N~Ie~l--d-eV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 384 NQIEEL--D-EVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cchhhH--H-HhcccccccHHHHHhhcCCCccc
Confidence 988652 1 23446667999999999998753
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.9e-07 Score=82.08 Aligned_cols=211 Identities=16% Similarity=0.188 Sum_probs=125.0
Q ss_pred ceEEeCCCCCCChhH-HHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHH
Q 011480 51 FSSVDMSGRNFGDEG-LFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 129 (484)
Q Consensus 51 l~~L~ls~~~~~~~~-~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l 129 (484)
++-+.+.++.|...+ +..++. .++.++++++.+|.+++ |+.++.++..+|.|+.|++++|++... |....
T Consensus 47 ~ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~----I~~lp 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD----IKSLP 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc----cccCc
Confidence 345556666664432 334443 36789999999998875 888888899999999999999887643 21111
Q ss_pred HhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCC---C--chHHHHHHHHHhcCCCccEEEcCCCCCChH
Q 011480 130 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI---D--YSGFTSLAEALLENSTIRSLHLNGNYGGAL 204 (484)
Q Consensus 130 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l---~--~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 204 (484)
....+|+.|-+.+..+.-...+. .+...|.+++|.++.|.+ . ++..+.. .+.+++++...|...
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s---~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~------s~~v~tlh~~~c~~~-- 186 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTS---SLDDLPKVTELHMSDNSLRQLNLDDNCIEDW------STEVLTLHQLPCLEQ-- 186 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhh---hhhcchhhhhhhhccchhhhhcccccccccc------chhhhhhhcCCcHHH--
Confidence 12367888989888877654443 344467788888888733 1 1111111 234555555555321
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 205 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 205 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
-+....+.-..+|++..+-+..+.+.+.....-. .+.+.+..|+++.+.+.+-+. ...+..++.|+.|.++++
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWAS---VDALNGFPQLVDLRVSEN 259 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccC----CCCCcchhhhhcccccccHHH---HHHHcCCchhheeeccCC
Confidence 1222222233467777777777766543322211 223355567777776665322 234566777777777777
Q ss_pred CCCc
Q 011480 285 DIGD 288 (484)
Q Consensus 285 ~l~~ 288 (484)
.+.+
T Consensus 260 Pl~d 263 (418)
T KOG2982|consen 260 PLSD 263 (418)
T ss_pred cccc
Confidence 6654
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=9.3e-07 Score=90.45 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc-HHHHHH
Q 011480 216 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD-EGAEKI 294 (484)
Q Consensus 216 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l 294 (484)
+|+|+.|.+++-.+..+++..++..++ +|..||+++++++.- ..++++++|+.|.+.+-.+.. ..+..
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFp----NL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~~~~l~~- 215 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFP----NLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFESYQDLID- 215 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccC----ccceeecCCCCccCc------HHHhccccHHHHhccCCCCCchhhHHH-
Confidence 455555555555554444444433332 555555555555542 235555556655555544433 11222
Q ss_pred HHHHHhCCCccEEEccCCCCChhH--HHHHHHHhhcCCCcCEEECCCCCCChhHHHHH
Q 011480 295 ADALKQNRTITTIDLGGNNIHSKG--ASAIARVLKDNSVITSLDLAYNPIGADGAKAL 350 (484)
Q Consensus 295 ~~~l~~~~~L~~L~l~~~~l~~~~--~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l 350 (484)
+-.+++|+.||+|........ +....+.-..+|.|+.||.|++.++.+.++.+
T Consensus 216 ---LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 216 ---LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred ---HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 223456666666555433322 11122222234566666666555554444433
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=1.3e-06 Score=89.30 Aligned_cols=157 Identities=11% Similarity=0.146 Sum_probs=103.3
Q ss_pred CCcCEEEccCCCC-ChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHH
Q 011480 217 KSLRELHLHGNSI-GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 295 (484)
Q Consensus 217 ~~L~~L~l~~~~l-~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 295 (484)
.+|++|+++|... +......+...+ |.|+.|.+.+-.+..+. +.+....+|+|..||++++++++-
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~L----PsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------ 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTML----PSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------ 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhC----cccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------
Confidence 4788888888743 344444444433 47899999887666543 556677888899999998888773
Q ss_pred HHHHhCCCccEEEccCCCCCh-hHHHHHHHHhhcCCCcCEEECCCCCCChhH--HHHHHHHHHhCCCcCEEeccCCCCCh
Q 011480 296 DALKQNRTITTIDLGGNNIHS-KGASAIARVLKDNSVITSLDLAYNPIGADG--AKALSEVLKFHGNINTLKLGWCQIGA 372 (484)
Q Consensus 296 ~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~--~~~l~~~~~~~~~L~~L~l~~~~i~~ 372 (484)
.+++.+++|+.|.+.+=.+.. ..+.++.. .++|+.||+|.....+.. +....+.-..+|+|+.||.++..++.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~----L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFN----LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhc----ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 457778888888887766654 33334443 488999999887544333 33333333447888888888887766
Q ss_pred hHHHHHHHHHHcCCCccEEEe
Q 011480 373 SGAEFVADMLRYNNTISILDL 393 (484)
Q Consensus 373 ~~~~~l~~~l~~~~~L~~L~l 393 (484)
...+.+ +...|+|+.+..
T Consensus 265 ~~le~l---l~sH~~L~~i~~ 282 (699)
T KOG3665|consen 265 EILEEL---LNSHPNLQQIAA 282 (699)
T ss_pred HHHHHH---HHhCccHhhhhh
Confidence 544443 444566665543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=6.8e-07 Score=87.30 Aligned_cols=175 Identities=29% Similarity=0.345 Sum_probs=111.0
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCC-CccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNS-ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 211 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 211 (484)
..++.|.+.++.++. +.......+ +|+.|++++|.+ ..++..+..++.|+.|++++|.++... .
T Consensus 116 ~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~-----~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLP-----K 180 (394)
T ss_pred cceeEEecCCccccc-----Cccccccchhhcccccccccch-----hhhhhhhhccccccccccCCchhhhhh-----h
Confidence 567777777777665 223233332 688888888877 334455667788888888888765432 2
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
.....+.|+.|++++|.+.+-.. .. .....|+++++++|.... ....+....++..+.+.+|.+.+.
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~l~~--~~----~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~-- 247 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISDLPP--EI----ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL-- 247 (394)
T ss_pred hhhhhhhhhheeccCCccccCch--hh----hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec--
Confidence 23356778888888887755221 11 111258888888885332 233456667777777777766541
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCCh
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 344 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~ 344 (484)
...+..++.++.|++++|.++.... +....+++.|+++++.+..
T Consensus 248 ---~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 248 ---PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ---cchhccccccceecccccccccccc------ccccCccCEEeccCccccc
Confidence 3345556778888888888776322 4455888888888876654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=3.9e-07 Score=89.48 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHH
Q 011480 301 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 380 (484)
Q Consensus 301 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 380 (484)
++.+++|+|++|++++. ..++.++.|+.|||++|.+.-.. .+.. .-..|..|.+++|.++.. ..+.+
T Consensus 186 l~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp--~l~~---~gc~L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVP--QLSM---VGCKLQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHhhhhccchhhhhhh------HHHHhcccccccccccchhcccc--ccch---hhhhheeeeecccHHHhh--hhHHh
Confidence 35566666666665542 13445566666666666543211 1110 012466677776665431 12222
Q ss_pred HHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 381 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 381 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
.++|+.||+++|-+.+-.--.+.-++ ..|+.|+|.||.+-.
T Consensus 253 ----LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 253 ----LKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLCC 293 (1096)
T ss_pred ----hhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCcccc
Confidence 36677777777755442211111122 346777777776543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=2.7e-07 Score=90.58 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=91.4
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHH
Q 011480 302 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 381 (484)
Q Consensus 302 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 381 (484)
..|.+.+++.|.+.. +-..+.-.+.|+.|+|+.|++.+. +.+..++.|++|||++|.+..........
T Consensus 164 n~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g- 231 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVG- 231 (1096)
T ss_pred hhHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhh-
Confidence 367777888887653 334444558999999999998763 34566799999999999876543222222
Q ss_pred HHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 382 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 382 l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
|. |..|.+++|.++.- .-+.+. .+|+.||+++|-|.+-.-......+. +|..|.+.||.+.=
T Consensus 232 ---c~-L~~L~lrnN~l~tL--~gie~L-----ksL~~LDlsyNll~~hseL~pLwsLs-----~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 232 ---CK-LQLLNLRNNALTTL--RGIENL-----KSLYGLDLSYNLLSEHSELEPLWSLS-----SLIVLWLEGNPLCC 293 (1096)
T ss_pred ---hh-heeeeecccHHHhh--hhHHhh-----hhhhccchhHhhhhcchhhhHHHHHH-----HHHHHhhcCCcccc
Confidence 34 99999999988763 222222 67999999999887655444444443 58899999997654
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=7.9e-07 Score=86.80 Aligned_cols=175 Identities=25% Similarity=0.340 Sum_probs=91.5
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHhhccCC-CcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHH
Q 011480 216 NKSLRELHLHGNSIGDEGIRALMSGLSSRK-GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 294 (484)
Q Consensus 216 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l 294 (484)
.+.++.|++.++.+.+-. ... ... .+|+.|++++|.+.. ++..+..+++|+.|++++|++.+ +
T Consensus 115 ~~~l~~L~l~~n~i~~i~--~~~----~~~~~nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l~~-----l 178 (394)
T COG4886 115 LTNLTSLDLDNNNITDIP--PLI----GLLKSNLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDLSD-----L 178 (394)
T ss_pred ccceeEEecCCcccccCc--ccc----ccchhhcccccccccchhh-----hhhhhhccccccccccCCchhhh-----h
Confidence 356677777766654421 111 111 157777777776665 33445666777777777776655 2
Q ss_pred HHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhH
Q 011480 295 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 374 (484)
Q Consensus 295 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~ 374 (484)
.......+.|+.|++++|++.+... .......|++|.+++|++.. ....+....++..+.+.+|.+...
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~~l~~-----~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~- 247 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKISDLPP-----EIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL- 247 (394)
T ss_pred hhhhhhhhhhhheeccCCccccCch-----hhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec-
Confidence 3222244667777777776665221 11122446677777664111 112223335555666666554331
Q ss_pred HHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 375 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 375 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
...+...+.++.|++++|.+++... +.. ..+++.|++++|.+.
T Consensus 248 ----~~~~~~l~~l~~L~~s~n~i~~i~~--~~~-----~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 ----PESIGNLSNLETLDLSNNQISSISS--LGS-----LTNLRELDLSGNSLS 290 (394)
T ss_pred ----cchhccccccceecccccccccccc--ccc-----cCccCEEeccCcccc
Confidence 2223334557777777776666432 111 155677777776554
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=1.9e-07 Score=89.08 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=61.4
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|..||.++|.+.. ++..+..+..|+.|.+..|++.+ ++..+. .-.|.+||+++|+++. +.-.+
T Consensus 167 tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~-----iPv~f 230 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISY-----LPVDF 230 (722)
T ss_pred hHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceee-----cchhh
Confidence 56666666666555 45555666667777777765544 333343 3467778888887665 33345
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
..++.|++|-|.+|++..--.....++ +-.-.|+|+...|
T Consensus 231 r~m~~Lq~l~LenNPLqSPPAqIC~kG--kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSPPAQICEKG--KVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCCCCCChHHHHhcc--ceeeeeeecchhc
Confidence 566888888888887754433322222 2234556666555
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.92 E-value=2.1e-05 Score=80.78 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=58.3
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHH
Q 011480 276 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 355 (484)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~ 355 (484)
++.|+|++|.+... +...+..+++|+.|+|++|.++.. +...+..+++|+.|+|++|.+...... .+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPE----SLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCch----HHh
Confidence 55666666666543 333455566666666666666543 233344556666777766666543332 223
Q ss_pred hCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCC
Q 011480 356 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 397 (484)
Q Consensus 356 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 397 (484)
.+++|+.|++++|.+++.....+... ..++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 44667777777666655443333321 1345566666653
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.1e-06 Score=86.06 Aligned_cols=128 Identities=29% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
..++.+.++.+.+.. ....+..+.+++.|++.+|.+.... ... ....+|++|++++|.|+.. .
T Consensus 72 ~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i~--~~l----~~~~~L~~L~ls~N~I~~i------~ 134 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKIE--NLL----SSLVNLQVLDLSFNKITKL------E 134 (414)
T ss_pred HhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhcc--cch----hhhhcchheeccccccccc------c
Confidence 344444455544432 1122445566666666666554311 101 1122566666666665552 1
Q ss_pred HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
.+..++.|+.|++++|.+.+. ..+..+..|+.+++++|+++..... . +..+.+++.+.+++|.+.
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhccchhhheeccCcchhc------cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchh
Confidence 234444466666666655442 1122245556666666655542211 0 233455555666655443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.85 E-value=7.4e-07 Score=87.21 Aligned_cols=108 Identities=27% Similarity=0.287 Sum_probs=54.9
Q ss_pred hcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHH
Q 011480 102 QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 181 (484)
Q Consensus 102 ~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l 181 (484)
....+++.+++.+|.+... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.+.. +
T Consensus 92 ~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~-----~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD-----I 155 (414)
T ss_pred ccccceeeeeccccchhhc-----ccchhhhhcchheecccccccccc------chhhccchhhheeccCcchh-----c
Confidence 3445566666666655321 111333466666666666665421 12223446666666666532 1
Q ss_pred HHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 011480 182 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 182 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 230 (484)
..+..++.|+.+++++|.+...... . +..+..++.+.+.+|.+.
T Consensus 156 -~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred -cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchh
Confidence 1122245666666666655433221 0 234556666666666554
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=1.2e-06 Score=59.94 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.6
Q ss_pred CCccEEEeccCCCCc
Q 011480 386 NTISILDLRANGLRD 400 (484)
Q Consensus 386 ~~L~~L~l~~n~i~~ 400 (484)
++|+.|++++|.++.
T Consensus 25 ~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 25 PNLETLDLSNNNLTS 39 (61)
T ss_dssp TTESEEEETSSSESE
T ss_pred CCCCEeEccCCccCc
Confidence 444444444444433
No 54
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.74 E-value=3e-05 Score=72.79 Aligned_cols=350 Identities=16% Similarity=0.062 Sum_probs=210.7
Q ss_pred ccCCCcceEecccCCCCHHHHHHHHHHhh--cCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHH
Q 011480 74 GYNQTAEEVSFAANGITAAGIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 151 (484)
Q Consensus 74 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~--~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 151 (484)
.....++.+.+.-|.+.......+..... ..+.+++++++.+.+.++...+|..- .--+.++.|..++..+.
T Consensus 132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis 205 (553)
T KOG4242|consen 132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFIS 205 (553)
T ss_pred cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHH
Confidence 34456777888888766554444433332 24578899999998888765555432 22267788887776555
Q ss_pred HHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhh-cCCCcCEEEccCCCCC
Q 011480 152 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE-GNKSLRELHLHGNSIG 230 (484)
Q Consensus 152 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~ 230 (484)
.+..--. -..+.+++++.|...++. ..+.........++.++.+...+..+.. +...+. .-..+...+++.+...
T Consensus 206 ~l~~qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l--~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 206 KLLIQSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLL--TSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred Hhhhhhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhc--ccccccccccccchhhhccCCCC
Confidence 4442111 235788999998876553 3344444455567777777664432211 111111 2335666666655432
Q ss_pred ----hhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCC--cEEEcCCCCCCcHHHHHHHHHHHhCCCc
Q 011480 231 ----DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL--LWINLYMNDIGDEGAEKIADALKQNRTI 304 (484)
Q Consensus 231 ----~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L--~~L~l~~~~l~~~~~~~l~~~l~~~~~L 304 (484)
.++.....+. .+...++ +|++..+....+....+.-.+...... -.+++..|...+..+. ..-..-..+
T Consensus 282 ~skg~Egg~~~k~~-fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vl---eaci~g~R~ 356 (553)
T KOG4242|consen 282 PSKGEEGGGAEKDT-FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVL---EACIFGQRV 356 (553)
T ss_pred cccccccccccccc-cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchh---hccccceee
Confidence 1222222222 2334466 788888877777665554333333322 3456666655443221 111122468
Q ss_pred cEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCC-----ChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHH
Q 011480 305 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI-----GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 379 (484)
Q Consensus 305 ~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i-----~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 379 (484)
++|++..|.+..++-... .+.+.++++.+++....- ...........-....-+..+.++.|... .+...+.
T Consensus 357 q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lk-a~l~s~i 433 (553)
T KOG4242|consen 357 QVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLK-AGLESAI 433 (553)
T ss_pred eEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccc-ccHHHHH
Confidence 899999998777654433 566778899998866421 11111111222122457788888888764 3445566
Q ss_pred HHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhC
Q 011480 380 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 442 (484)
Q Consensus 380 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 442 (484)
..+...+++..|++++|..++.|...+.+..+ .|..++.+..+.|.+++.+..-+...+.-+
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhcccc
Confidence 66777889999999999999988888877765 567889999999988888887777665544
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.73 E-value=5.4e-05 Score=77.85 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=64.4
Q ss_pred ccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHH
Q 011480 304 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 383 (484)
Q Consensus 304 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 383 (484)
++.|+|++|.++.. +...+..+++|+.|+|++|.+..... ..+..+++|+.|++++|.+++.... .+.
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~LdLs~N~lsg~iP~----~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPE----SLG 487 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCcCC----hHHhCCCCCCEEECCCCCCCCCCch----HHh
Confidence 66777777776543 23334555777777777777654322 2234457777777777777654333 334
Q ss_pred cCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 384 YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 384 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
.+++|+.|++++|.++......+.... .++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~----~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRL----LHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhcc----ccCceEEecCCc
Confidence 457777777777777665544443321 335566666664
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.69 E-value=3e-05 Score=81.82 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=104.5
Q ss_pred CCCcCEEEeeccC--CChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHH
Q 011480 132 NAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 209 (484)
Q Consensus 132 ~~~L~~L~l~~~~--~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l 209 (484)
++.|++|-+..+. +... -..++..+|.|+.||+++|.- ...++..++.+-+|+.|+++++.+. .+
T Consensus 544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-----~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-----HL 610 (889)
T ss_pred CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-----cc
Confidence 4568888777764 2211 123355678899999998643 2567788888889999999888765 67
Q ss_pred HHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcH
Q 011480 210 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 289 (484)
Q Consensus 210 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 289 (484)
|..+.+++.|.+|++..+..... ...+...+ .+|++|.+......... .....+..+.+|+.+....... .
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L----~~Lr~L~l~~s~~~~~~--~~l~el~~Le~L~~ls~~~~s~--~ 681 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLES-IPGILLEL----QSLRVLRLPRSALSNDK--LLLKELENLEHLENLSITISSV--L 681 (889)
T ss_pred chHHHHHHhhheecccccccccc-ccchhhhc----ccccEEEeeccccccch--hhHHhhhcccchhhheeecchh--H
Confidence 78888888999999887643211 12222222 37888888765422221 1333455666666666543322 1
Q ss_pred HHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCCh
Q 011480 290 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 344 (484)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~ 344 (484)
....+.....-....+.+.+.++. .......+...++|+.|.+.++++.+
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~-----~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCS-----KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccc-----cceeecccccccCcceEEEEcCCCch
Confidence 111111110000111122222211 12233445566888888888877654
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=2.7e-06 Score=58.20 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=47.6
Q ss_pred CCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcC
Q 011480 386 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 457 (484)
Q Consensus 386 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i 457 (484)
|+|+.|++++|+++......+... ++|++|++++|.++......+... .+|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l-----~~L~~L~l~~N~l~~i~~~~f~~l------~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNL-----PNLETLDLSNNNLTSIPPDAFSNL------PNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTG-----TTESEEEETSSSESEEETTTTTTS------TTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCC-----CCCCEeEccCCccCccCHHHHcCC------CCCCEEeCcCCcC
Confidence 578999999998887655544433 889999999999987666555444 3599999999975
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.62 E-value=1.2e-06 Score=83.86 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 188 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
+..|+.+.+..|.+. .++..+.++..|+.++++.|.++.-.. .++ ...|+.|-+++|+++. ++
T Consensus 97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC------~lpLkvli~sNNkl~~-----lp 159 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPD-GLC------DLPLKVLIVSNNKLTS-----LP 159 (722)
T ss_pred HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCCh-hhh------cCcceeEEEecCcccc-----CC
Confidence 334444444444332 223344555666667776665543111 111 1157778888877765 45
Q ss_pred HHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHH
Q 011480 268 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 347 (484)
Q Consensus 268 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~ 347 (484)
..++..++|..||.+.|++.. +..-+..+..|+.|.+..|++.+ +..-+. .=.|..||+|.|++...
T Consensus 160 ~~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-----lp~El~-~LpLi~lDfScNkis~i-- 226 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-----LPEELC-SLPLIRLDFSCNKISYL-- 226 (722)
T ss_pred cccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-----CCHHHh-CCceeeeecccCceeec--
Confidence 556666778888888776644 34445556777777777776544 222222 35677888888876542
Q ss_pred HHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 348 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 348 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
.-.+.+...|++|-|.+|.+.....+.-.... ..-.++|+..-|
T Consensus 227 ---Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk--VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 ---PVDFRKMRHLQVLQLENNPLQSPPAQICEKGK--VHIFKYLSTQAC 270 (722)
T ss_pred ---chhhhhhhhheeeeeccCCCCCChHHHHhccc--eeeeeeecchhc
Confidence 22223446777777777777655444332221 233555555544
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.37 E-value=0.00021 Score=44.70 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=16.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 303 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 303 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
+|++|++++|+|++ +...+..+++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555554 2222444555555555555544
No 60
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.32 E-value=0.00011 Score=77.68 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=18.4
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
+|++|++++..+.. +|..+..++.|.+|++..+
T Consensus 596 ~LryL~L~~t~I~~-----LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 596 HLRYLDLSDTGISH-----LPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hhhcccccCCCccc-----cchHHHHHHhhheeccccc
Confidence 45555555555553 5555555555666655544
No 61
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.29 E-value=0.00034 Score=65.91 Aligned_cols=383 Identities=16% Similarity=0.093 Sum_probs=172.8
Q ss_pred HHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHh--CCCcCEEEeeccCC
Q 011480 68 FLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD--NAGVERLQLSSVDL 145 (484)
Q Consensus 68 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~--~~~L~~L~l~~~~~ 145 (484)
.+...+.+..--++|--.....+......+.........++.+++.-+-+..+....+...... .+.+++++++.+.+
T Consensus 98 ~ivsaley~~pf~el~a~~~r~e~ev~~sil~v~~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi 177 (553)
T KOG4242|consen 98 FIVSALEYAEPFPELAAPGERAEPEVGPSILGVPSPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPI 177 (553)
T ss_pred HHHhhhhhcccCccccchhhhccccccchhhccccccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcc
Confidence 3344444444444444444444444344444443333445555554443332222222211111 34466666666666
Q ss_pred ChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEcc
Q 011480 146 RDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 225 (484)
Q Consensus 146 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~ 225 (484)
.+...-++..-. --+.+..+..++.++..+... ..-..+.+++++.+...+... ...+......-++.++.+
T Consensus 178 ~dkvpihl~~p~------~pl~lr~c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip-~~~n~~a~~~vl~~ld~s 249 (553)
T KOG4242|consen 178 GDKVPIHLPQPG------NPLSLRVCELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIP-RTLNKKAGTLVLFKLDRS 249 (553)
T ss_pred cccCCccccCCC------CccchhhhhhhhhHHHHhhhh-hccccccccccccCCCCccch-hHHHHhhhhhhhhccccc
Confidence 655444443321 114555555555544444311 011245666666655433222 122223333345556555
Q ss_pred CCCCChh-HHHHHHHhhccCCCcceEEEccCCCCChhhHH----HHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHh
Q 011480 226 GNSIGDE-GIRALMSGLSSRKGKLAVLDIGNNSISAKGAF----HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 300 (484)
Q Consensus 226 ~~~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~ 300 (484)
...+.-+ .+..+ .....+++...+++.|........ ..-+.++.-+++ +|++..+...++....+.-.++.
T Consensus 250 ~tgirlD~l~~~l---~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ 325 (553)
T KOG4242|consen 250 TTGIRLDLLTSPL---AAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAE 325 (553)
T ss_pred ccccchhhccccc---ccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhccccc
Confidence 5543221 11111 112223455555555543322111 111222333345 55666665555555554444433
Q ss_pred CCCcc--EEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCC---CChhHH
Q 011480 301 NRTIT--TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ---IGASGA 375 (484)
Q Consensus 301 ~~~L~--~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---i~~~~~ 375 (484)
+.... ++++..|......+. .+-..-..+++|....|+...++-... .++..+.++.+++.+-. +-+.+.
T Consensus 326 ne~t~g~rldl~~cp~~~a~vl---eaci~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~ 400 (553)
T KOG4242|consen 326 NEATLGARLDLRRCPLERAEVL---EACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSST 400 (553)
T ss_pred ccccccccCChhhccccccchh---hccccceeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccc
Confidence 22222 445555544332221 111111346777777766555443333 23344556666655432 111111
Q ss_pred HHHHHHH--HcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeecc
Q 011480 376 EFVADML--RYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 453 (484)
Q Consensus 376 ~~l~~~l--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~ 453 (484)
.+....+ ..---+..+.++.|...... ..+..... .++++.+|+|++|...+.+...+...++.+.. +..+-.+
T Consensus 401 ~a~~v~k~~~~~g~l~el~ls~~~lka~l-~s~in~l~-stqtl~kldisgn~mgd~gap~lpkalq~n~r--lr~ipds 476 (553)
T KOG4242|consen 401 EAPPVSKKSRTHGVLAELSLSPGPLKAGL-ESAINKLL-STQTLAKLDISGNGMGDGGAPPLPKALQSNCR--LRPIPDS 476 (553)
T ss_pred cchhhhhhhcccccccCcccCCCcccccH-HHHHHhhc-cCcccccccccCCCcccCCCCcCccccCCCCc--cCCCCCC
Confidence 1111111 12234566677777665532 22223222 23677788888887777777777777665554 7777777
Q ss_pred CCcCchhhhhhhhhhhhh
Q 011480 454 NNFLTKFGQSALTDAKDL 471 (484)
Q Consensus 454 ~n~i~~~~~~~l~~~~~~ 471 (484)
.|-.+..+.-...+....
T Consensus 477 ~n~p~~~gl~p~~~~~p~ 494 (553)
T KOG4242|consen 477 LNLPEDPGLGPRNEERPL 494 (553)
T ss_pred CCCccccccchhhhhccc
Confidence 777666666555444333
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.23 E-value=0.00034 Score=43.79 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=17.2
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
+|++|++++|.+.+ ++..+..+++|+.|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 34555555555554 33334455555555555555443
No 63
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=97.19 E-value=0.0012 Score=59.69 Aligned_cols=119 Identities=27% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHH
Q 011480 274 KSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 352 (484)
Q Consensus 274 ~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~ 352 (484)
+.+...++.+. .+....+..+..++..++..+.+.+.+.+..+.....++..+..|++|++|++++|.|+..++..+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 45666666655 56666666666666666777777777777666666666677777777777777777777777776666
Q ss_pred HHHhCCCcCEEeccCC--CCChhHHHHHHHHHHcCCCccEEE
Q 011480 353 VLKFHGNINTLKLGWC--QIGASGAEFVADMLRYNNTISILD 392 (484)
Q Consensus 353 ~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~l~~~~~L~~L~ 392 (484)
++..+.+|..+.+.+- .++......++.++..|.+|-.+-
T Consensus 278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~g 319 (353)
T KOG3735|consen 278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFG 319 (353)
T ss_pred HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccc
Confidence 6666666666655543 133333445555555555554443
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=0.00049 Score=53.93 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=71.1
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHH
Q 011480 302 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 381 (484)
Q Consensus 302 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 381 (484)
..+..++|+.|++.. +.+....+.....|...++++|.+.+-.- +...+.+.++.|++++|.+.+...+ ++.+
T Consensus 27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~----kft~kf~t~t~lNl~~neisdvPeE-~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPK----KFTIKFPTATTLNLANNEISDVPEE-LAAM 99 (177)
T ss_pred HHhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCH----HHhhccchhhhhhcchhhhhhchHH-Hhhh
Confidence 456677888887653 23344455566778888888886543211 1112346778888888887765444 5444
Q ss_pred HHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHH
Q 011480 382 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 433 (484)
Q Consensus 382 l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 433 (484)
+.|+.|+++.|.+... +..++.. .++-.|+..+|.+.+....
T Consensus 100 ----~aLr~lNl~~N~l~~~-p~vi~~L-----~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 100 ----PALRSLNLRFNPLNAE-PRVIAPL-----IKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ----HHhhhcccccCccccc-hHHHHHH-----HhHHHhcCCCCccccCcHH
Confidence 7888888888877664 3333332 4467777777766555544
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00098 Score=55.93 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=63.4
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEccCC-CCChhHHHHHHH
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIAR 324 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~ 324 (484)
.++.+|-+++.|..++... +..++.++.|.+.+| .++|.++..+.. + .++|+.|++++| +||+.|+..+..
T Consensus 102 ~IeaVDAsds~I~~eGle~----L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~--~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH----LRDLRSIKSLSLANCKYFDDWCLERLGG-L--APSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHH----HhccchhhhheeccccchhhHHHHHhcc-c--ccchheeeccCCCeechhHHHHHHH
Confidence 6888888888888776544 567788888888888 788887777665 2 378888888877 588888776666
Q ss_pred HhhcCCCcCEEECCCC
Q 011480 325 VLKDNSVITSLDLAYN 340 (484)
Q Consensus 325 ~l~~~~~L~~L~ls~n 340 (484)
. ++|+.|.+.+-
T Consensus 175 l----knLr~L~l~~l 186 (221)
T KOG3864|consen 175 L----KNLRRLHLYDL 186 (221)
T ss_pred h----hhhHHHHhcCc
Confidence 5 88888887765
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.06 E-value=0.00059 Score=53.49 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=56.4
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh-hcCCCcCEEECCCCCCChhHHHHHHHHH
Q 011480 276 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL-KDNSVITSLDLAYNPIGADGAKALSEVL 354 (484)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l-~~~~~L~~L~ls~n~i~~~~~~~l~~~~ 354 (484)
+..++|+.|++..- ......+.....|+.+++++|.+.+ +...+ ...+.++.|++++|.+.+.-.+ +..
T Consensus 29 ~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa-- 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDVPEE-LAA-- 98 (177)
T ss_pred hhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhchHH-Hhh--
Confidence 55666666655421 1111223334566667777776543 22211 2235677777777776654333 332
Q ss_pred HhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch
Q 011480 355 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 401 (484)
.+.|+.|+++.|.+... ++.+... .+|-.|+..+|.+-..
T Consensus 99 --m~aLr~lNl~~N~l~~~-p~vi~~L----~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 99 --MPALRSLNLRFNPLNAE-PRVIAPL----IKLDMLDSPENARAEI 138 (177)
T ss_pred --hHHhhhcccccCccccc-hHHHHHH----HhHHHhcCCCCccccC
Confidence 25677777777766432 2223332 4566666666654443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00031 Score=61.75 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHH
Q 011480 302 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 381 (484)
Q Consensus 302 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 381 (484)
.+.+.|+..+|.+++..+ ..+++.|+.|.||-|+|+.- ..+..|++|+.|.|..|.|.+...- ..
T Consensus 19 ~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldEL---~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDEL---EY 83 (388)
T ss_pred HHhhhhcccCCCccHHHH------HHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHHH---HH
Confidence 345556666666665332 23346666666666655432 2223445666666666665442111 12
Q ss_pred HHcCCCccEEEeccC-CCCchhHHHHHHHHHhcCccccEEE
Q 011480 382 LRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSID 421 (484)
Q Consensus 382 l~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~L~~L~ 421 (484)
++..|+|+.|.|..| .-...|..+-...++-. ++|++||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 333466666666665 23333444433333322 5555554
No 68
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.87 E-value=0.0068 Score=54.95 Aligned_cols=131 Identities=20% Similarity=0.247 Sum_probs=102.5
Q ss_pred HHHhhccCCCcceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCC
Q 011480 237 LMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 315 (484)
Q Consensus 237 ~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 315 (484)
...-+....+.++..++.++ .+.......+..++....+.+.+.+.+...++.....++..+..+..|++|++..|.|+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 34444455568888888776 57777778888889999999999999888888877778888888999999999999999
Q ss_pred hhHHHHHHHHhhcCCCcCEEECCCC--CCChhHHHHHHHHHHhCCCcCEEeccC
Q 011480 316 SKGASAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGW 367 (484)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~ls~n--~i~~~~~~~l~~~~~~~~~L~~L~l~~ 367 (484)
..|+.++..++..+.+|.++-+.+- -++...-..+...+..+.+|-.+.+..
T Consensus 269 g~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~f 322 (353)
T KOG3735|consen 269 GLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYHF 322 (353)
T ss_pred cHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999887764 345555556666777677665555544
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.0008 Score=56.45 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=15.3
Q ss_pred CccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCC
Q 011480 303 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 340 (484)
Q Consensus 303 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n 340 (484)
.++.+|-+++.|..+|+..+... +.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc----chhhhheeccc
Confidence 34444445554444444433222 44444444444
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.61 E-value=0.0035 Score=34.76 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=12.0
Q ss_pred ccccEEEcCCCCCChhHHHHHHHH
Q 011480 415 EALTSIDLAFNEIRDDGAFAIAQA 438 (484)
Q Consensus 415 ~~L~~L~l~~n~i~~~~~~~l~~~ 438 (484)
++|+.|+|++|.|++.|+..+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 345555555555555555555444
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.00079 Score=56.45 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=63.0
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHh-CCCccEEEccCCCCChhHHHHHHHH
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
....+|+++|.+... ..+...+.|.+|.+++|.|+.- ...+.. +++|+.|.+.+|.|..-+. + .-
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP 108 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence 566777777766542 2345666777888887777652 222222 4677888888877654321 1 22
Q ss_pred hhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCC
Q 011480 326 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 369 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 369 (484)
+..||.|++|.+=+|+++...--- ...+...|+|+.||+.+-.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR-~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYR-LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCce-eEEEEecCcceEeehhhhh
Confidence 456688888888777765432110 0122335777777776544
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.53 E-value=0.0036 Score=34.72 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=19.8
Q ss_pred CCccEEEeccCCCCchhHHHHHHHH
Q 011480 386 NTISILDLRANGLRDEGAKCLAQSF 410 (484)
Q Consensus 386 ~~L~~L~l~~n~i~~~~~~~l~~~~ 410 (484)
++|++|||++|.++++|...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5788888888888888888777764
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00075 Score=59.42 Aligned_cols=103 Identities=26% Similarity=0.244 Sum_probs=50.5
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 185 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 185 (484)
+.+.|++.++.+++.. ....++.|+.|.|+-|+|+.. ..+..|.+|++|.|..|.+.+ +..+ .++
T Consensus 20 ~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~s--ldEL-~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIES--LDEL-EYL 84 (388)
T ss_pred HhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhccccc--HHHH-HHH
Confidence 4555666666555431 222346666666666665542 113345566666666665543 2222 355
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCcCEEE
Q 011480 186 LENSTIRSLHLNGNYGGALGANALA-KGLEGNKSLRELH 223 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~l~~~~~L~~L~ 223 (484)
.++|+|+.|-|..|........... ..+..+|+|++|+
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5566666666655543322222211 2234456666654
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.33 E-value=0.0022 Score=34.10 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=7.2
Q ss_pred ccEEEcCCCCCChhHHHHH
Q 011480 417 LTSIDLAFNEIRDDGAFAI 435 (484)
Q Consensus 417 L~~L~l~~n~i~~~~~~~l 435 (484)
|++|+|++|+|++.++.++
T Consensus 4 L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 4 LETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -SEEE-TSSBEHHHHHHHH
T ss_pred CCEEEccCCcCCHHHHHHh
Confidence 4444444444444444433
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.96 E-value=0.0055 Score=32.53 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=12.0
Q ss_pred CCccEEEeccCCCCchhHHHHH
Q 011480 386 NTISILDLRANGLRDEGAKCLA 407 (484)
Q Consensus 386 ~~L~~L~l~~n~i~~~~~~~l~ 407 (484)
++|+.|+|++|.|+++|+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666655543
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.91 E-value=0.0039 Score=52.41 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.0
Q ss_pred CCCcCEEEeeccCCCh
Q 011480 132 NAGVERLQLSSVDLRD 147 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~ 147 (484)
.+.|..|.+++|.|+.
T Consensus 63 l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITR 78 (233)
T ss_pred ccccceEEecCCccee
Confidence 3445555555555443
No 77
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0026 Score=55.75 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=29.4
Q ss_pred CCCccEEEccCCCCChh-HHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCC
Q 011480 301 NRTITTIDLGGNNIHSK-GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 370 (484)
Q Consensus 301 ~~~L~~L~l~~~~l~~~-~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i 370 (484)
+++|+.|.++.|..... ++..++ ..+|+|++|++++|++.+ +..+ ..++..++|..|++.+|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehh---hhCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCCc
Confidence 45566666666522111 122222 223666666666665543 1111 1223335566666666653
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.35 E-value=0.016 Score=31.43 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=11.2
Q ss_pred CCccEEEeccC-CCCchhHHHH
Q 011480 386 NTISILDLRAN-GLRDEGAKCL 406 (484)
Q Consensus 386 ~~L~~L~l~~n-~i~~~~~~~l 406 (484)
+.|+.|++++| .|+|.|+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 45555555555 4555555444
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.51 E-value=0.063 Score=51.37 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=66.9
Q ss_pred HhcCCCccEEEcCCCCCChHHHHHHHHHhhcC-CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCC-CCChhh
Q 011480 185 LLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKG 262 (484)
Q Consensus 185 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~ 262 (484)
+..+++++.|++++|.++.. + .+ .+|++|.++++.--.. ++ ..++ .+|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-----P----~LP~sLtsL~Lsnc~nLts-LP---~~LP---~nLe~L~Ls~Cs~L~s-- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-----P----VLPNELTEITIENCNNLTT-LP---GSIP---EGLEKLTVCHCPEISG-- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-----C----CCCCCCcEEEccCCCCccc-CC---chhh---hhhhheEccCcccccc--
Confidence 44567778888887765432 1 22 3577787776532110 11 1111 26777777776 3321
Q ss_pred HHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCC-CChhHHHHHHHHhhcCCCcCEEECCCCC
Q 011480 263 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNP 341 (484)
Q Consensus 263 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~ls~n~ 341 (484)
++ .+|+.|++..+.... +..+ .++|+.|.+.+++ ..... +...+ .++|++|++++|.
T Consensus 110 ---LP------~sLe~L~L~~n~~~~--L~~L------PssLk~L~I~~~n~~~~~~---lp~~L--PsSLk~L~Is~c~ 167 (426)
T PRK15386 110 ---LP------ESVRSLEIKGSATDS--IKNV------PNGLTSLSINSYNPENQAR---IDNLI--SPSLKTLSLTGCS 167 (426)
T ss_pred ---cc------cccceEEeCCCCCcc--cccC------cchHhheeccccccccccc---ccccc--CCcccEEEecCCC
Confidence 22 346777766544432 1111 2456666664322 11000 11111 2577888887765
Q ss_pred CChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 342 IGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 342 i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
... +...+ ..+|+.|.++.+
T Consensus 168 ~i~-----LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 168 NII-----LPEKL--PESLQSITLHIE 187 (426)
T ss_pred ccc-----Ccccc--cccCcEEEeccc
Confidence 321 11111 147777777665
No 80
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.30 E-value=0.038 Score=48.63 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=4.6
Q ss_pred CCCcEEEcCCCC
Q 011480 274 KSLLWINLYMND 285 (484)
Q Consensus 274 ~~L~~L~l~~~~ 285 (484)
|+|++|++++|+
T Consensus 91 P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 91 PNLKVLNLSGNK 102 (260)
T ss_pred CceeEEeecCCc
Confidence 333333333333
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.80 E-value=0.14 Score=27.71 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=8.9
Q ss_pred CCCcEEEcCCC-CCCcHHHHH
Q 011480 274 KSLLWINLYMN-DIGDEGAEK 293 (484)
Q Consensus 274 ~~L~~L~l~~~-~l~~~~~~~ 293 (484)
++|+.|++++| .++|.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 34444444444 344444433
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.76 E-value=0.24 Score=47.49 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=76.3
Q ss_pred HHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCC-CCChH
Q 011480 126 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGAL 204 (484)
Q Consensus 126 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~ 204 (484)
..-+..+.++++|++++|.+.. ++.. -++|++|.++++.-- ..++..+ +++|+.|.+++| .+.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~s-----LP~L---P~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~Cs~L~-- 108 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIES-----LPVL---PNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCHCPEIS-- 108 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcc-----cCCC---CCCCcEEEccCCCCc----ccCCchh--hhhhhheEccCccccc--
Confidence 3345567899999999997765 2211 136999999885331 2223222 358899999887 332
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 205 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 205 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
.+ .++|+.|++.++.... + . ..++.|+.|.+.++..... ..++. .-.++|++|++++|
T Consensus 109 ---sL------P~sLe~L~L~~n~~~~--L----~---~LPssLk~L~I~~~n~~~~--~~lp~--~LPsSLk~L~Is~c 166 (426)
T PRK15386 109 ---GL------PESVRSLEIKGSATDS--I----K---NVPNGLTSLSINSYNPENQ--ARIDN--LISPSLKTLSLTGC 166 (426)
T ss_pred ---cc------ccccceEEeCCCCCcc--c----c---cCcchHhheeccccccccc--ccccc--ccCCcccEEEecCC
Confidence 12 2468888887654332 1 1 1223566776643221100 00010 01145777777776
Q ss_pred CCCcHHHHHHHHHHHhCCCccEEEccCC
Q 011480 285 DIGDEGAEKIADALKQNRTITTIDLGGN 312 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 312 (484)
.... ++..+ ..+|+.|.++.+
T Consensus 167 ~~i~-----LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII-----LPEKL--PESLQSITLHIE 187 (426)
T ss_pred Cccc-----Ccccc--cccCcEEEeccc
Confidence 5331 12112 246777777654
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.52 E-value=0.29 Score=23.35 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=4.1
Q ss_pred CccEEEeccCCC
Q 011480 387 TISILDLRANGL 398 (484)
Q Consensus 387 ~L~~L~l~~n~i 398 (484)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.67 E-value=0.31 Score=25.04 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=10.1
Q ss_pred eeEeeccCCcCchhhh
Q 011480 447 VTSLNLANNFLTKFGQ 462 (484)
Q Consensus 447 L~~l~l~~n~i~~~~~ 462 (484)
|++|++++|+|+..+.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 6677777776665443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.87 E-value=2.1 Score=42.23 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=93.0
Q ss_pred hcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCC--CCChhHHHHHHHHhhcCCCcCEEECCCCCCChhH--
Q 011480 271 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNPIGADG-- 346 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~--~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~-- 346 (484)
.+.+.+..++|++|.+-. +..+...-...++|+.|+|++| .+..+ ..+... ....|++|-+.||++....
T Consensus 215 ~n~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred cCCcceeeeecccchhhc--hhhhhHHHHhcchhheeecccchhhhcch--hhhhhh--cCCCHHHeeecCCccccchhh
Confidence 346778888888886644 2223332334578888888888 33322 112221 2367788888888775432
Q ss_pred ----HHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhc---------
Q 011480 347 ----AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVV--------- 413 (484)
Q Consensus 347 ----~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~--------- 413 (484)
+..+.+. .|+|..|| |..+..... ..+.. =.-.-+..+.+.+.++..+...|-..
T Consensus 289 ~s~yv~~i~~~---FPKL~~LD--G~ev~~~~~--d~~~~-----~~~~p~k~~ff~~~~l~~LV~~Fl~~y~~~yD~~d 356 (585)
T KOG3763|consen 289 RSEYVSAIREL---FPKLLRLD--GVEVQPEVI--DINAS-----ETPMPCKQNFFGSEELKQLVLQFLQQYYKIYDNND 356 (585)
T ss_pred hHHHHHHHHHh---cchheeec--CcccCcccc--ccccc-----cCCcchhhcccCchHHHHHHHHHHHHHHHhhcCch
Confidence 2222222 45554443 333322110 00000 00012234556666666555444211
Q ss_pred ---------CccccEEEcCCCCCC-hhHHHHHHHHHHhCCccceeEeeccC-----CcCch-hhhhhhhhhhhhhhhhcc
Q 011480 414 ---------NEALTSIDLAFNEIR-DDGAFAIAQALKANEDVAVTSLNLAN-----NFLTK-FGQSALTDAKDLVYEMSE 477 (484)
Q Consensus 414 ---------~~~L~~L~l~~n~i~-~~~~~~l~~~l~~~~~~~L~~l~l~~-----n~i~~-~~~~~l~~~~~~~~~~~~ 477 (484)
..+.=+|.+.++... ......++...+..++ ++.+.=.+ -..+. .-+.+|..++.-.+.+++
T Consensus 357 ~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRN--i~~l~~~~~r~srl~~g~~~Iv~aLs~LPkT~Hdl~s 434 (585)
T KOG3763|consen 357 GQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRN--ILKLKDPYLRASRLKHGACDIVVALSALPKTQHDLDS 434 (585)
T ss_pred hhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcch--hhhhcCHHHHHHhhhccchHHHHHHHhCccchhhhhh
Confidence 012224444444322 2445666666665555 33322111 11111 345566667777777776
Q ss_pred chhcccC
Q 011480 478 KEVNIFF 484 (484)
Q Consensus 478 ~~~~~~~ 484 (484)
--+++||
T Consensus 435 ~vvDv~~ 441 (585)
T KOG3763|consen 435 FVVDVWY 441 (585)
T ss_pred hheeeee
Confidence 6666554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.05 E-value=3 Score=41.18 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=56.1
Q ss_pred HhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC--CCCcHHHHHHHHHHHhCCCccEEEccCCCCCh
Q 011480 239 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHS 316 (484)
Q Consensus 239 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~--~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 316 (484)
+....+.+.+..+.+++|++..-+. +...-...|+|..|+|++| .+... .++.+ + ....|++|-+.+|.+..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~--~el~K-~-k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSE--SELDK-L-KGLPLEELVLEGNPLCT 284 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcch--hhhhh-h-cCCCHHHeeecCCcccc
Confidence 3444555678889999998776333 4444566788999999998 44332 12221 1 24678899999998765
Q ss_pred hHH---HHHHHHhhcCCCcCEEE
Q 011480 317 KGA---SAIARVLKDNSVITSLD 336 (484)
Q Consensus 317 ~~~---~~l~~~l~~~~~L~~L~ 336 (484)
.-. ..+.......|+|..||
T Consensus 285 tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred chhhhHHHHHHHHHhcchheeec
Confidence 321 12222222457776665
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=68.96 E-value=3.2 Score=22.10 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=11.2
Q ss_pred eeEeeccCCcCchhhhhhh
Q 011480 447 VTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 447 L~~l~l~~n~i~~~~~~~l 465 (484)
|++|++++|+|+......|
T Consensus 4 L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 4 LRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCEEECCCCcCCcCCHHHc
Confidence 5666666666666555444
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=68.96 E-value=3.2 Score=22.10 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=11.2
Q ss_pred eeEeeccCCcCchhhhhhh
Q 011480 447 VTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 447 L~~l~l~~n~i~~~~~~~l 465 (484)
|++|++++|+|+......|
T Consensus 4 L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 4 LRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCEEECCCCcCCcCCHHHc
Confidence 5666666666666555444
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=65.53 E-value=0.52 Score=37.39 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=7.0
Q ss_pred hhcCCCcCEEECCCC
Q 011480 326 LKDNSVITSLDLAYN 340 (484)
Q Consensus 326 l~~~~~L~~L~ls~n 340 (484)
+..+++|+.+.+..+
T Consensus 31 F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN 45 (129)
T ss_dssp TTT-TT-SEEEESST
T ss_pred ccccccccccccccc
Confidence 344456666666543
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.04 E-value=9.3 Score=20.60 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=8.8
Q ss_pred ccccEEEcCCCCCC
Q 011480 415 EALTSIDLAFNEIR 428 (484)
Q Consensus 415 ~~L~~L~l~~n~i~ 428 (484)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34666666666664
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=48.10 E-value=2.3 Score=33.61 Aligned_cols=119 Identities=14% Similarity=0.288 Sum_probs=53.2
Q ss_pred HhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHH
Q 011480 325 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 404 (484)
Q Consensus 325 ~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~ 404 (484)
++..+.+|+.+.+... +...+. ..+..+++|+.+.+.++ +...+..+ +..++.++.+.+.+ .+...+..
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~I~~----~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKKIGE----NAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETST---EE-T----TTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE-TT
T ss_pred HHhCCCCCCEEEECCC-eeEeCh----hhccccccccccccccc-ccccceee----eecccccccccccc-cccccccc
Confidence 3566778898888743 222111 12344568899998875 44333322 44457889999865 33332222
Q ss_pred HHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 405 CLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 405 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
.+... .+|+.+++..+ ++..+...+... .++.+.+.. .+...+...|...
T Consensus 76 ~F~~~-----~~l~~i~~~~~-~~~i~~~~f~~~-------~l~~i~~~~-~~~~i~~~~F~~~ 125 (129)
T PF13306_consen 76 AFSNC-----TNLKNIDIPSN-ITEIGSSSFSNC-------NLKEINIPS-NITKIEENAFKNC 125 (129)
T ss_dssp TTTT------TTECEEEETTT--BEEHTTTTTT--------T--EEE-TT-B-SS----GGG--
T ss_pred ccccc-----ccccccccCcc-ccEEchhhhcCC-------CceEEEECC-CccEECCcccccc
Confidence 22222 67888888765 554444444322 378888775 4455555555443
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=37.92 E-value=20 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=7.0
Q ss_pred CccEEEeccCCCCc
Q 011480 387 TISILDLRANGLRD 400 (484)
Q Consensus 387 ~L~~L~l~~n~i~~ 400 (484)
+|+.|++++|.++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 35555555555443
No 93
>PF14443 DBC1: DBC1
Probab=36.25 E-value=23 Score=27.66 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.6
Q ss_pred ccCcccccccccccccccccccchhhHHHHHHHHHHcccceEEeCCCCC
Q 011480 12 AEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRN 60 (484)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~ls~~~ 60 (484)
.-|..|+ ++.=++....+...-+...++.++.++.+|||+|.
T Consensus 21 aiGG~Ws-------psLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct 62 (126)
T PF14443_consen 21 AIGGPWS-------PSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCT 62 (126)
T ss_pred ecCCcCC-------cccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcC
Confidence 3488888 44434455555666678888899999999999875
No 94
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=26.96 E-value=46 Score=17.81 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=2.2
Q ss_pred EEEccC
Q 011480 250 VLDIGN 255 (484)
Q Consensus 250 ~L~l~~ 255 (484)
+|++..
T Consensus 4 tL~L~~ 9 (26)
T PF07723_consen 4 TLHLDS 9 (26)
T ss_pred EEEeeE
Confidence 333333
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=26.59 E-value=27 Score=27.31 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=5.6
Q ss_pred HHHHHhhcCCCCCE
Q 011480 96 AFDGVLQSNIALKT 109 (484)
Q Consensus 96 ~l~~~l~~~~~L~~ 109 (484)
.+..++..++.|..
T Consensus 52 ~m~~mF~~~~~l~~ 65 (120)
T PF03382_consen 52 NMSGMFAGCSSLNQ 65 (120)
T ss_pred eHHHHHhhhhhcCC
Confidence 33344444444444
Done!