Query 011480
Match_columns 484
No_of_seqs 218 out of 3262
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 6.9E-45 2.4E-49 361.8 43.5 414 49-467 3-420 (461)
2 1z7x_W Ribonuclease inhibitor; 100.0 9.5E-43 3.2E-47 346.4 47.9 430 38-470 17-452 (461)
3 2ca6_A RAN GTPase-activating p 100.0 4.7E-31 1.6E-35 255.6 31.0 301 112-441 11-331 (386)
4 2ca6_A RAN GTPase-activating p 100.0 2.9E-31 1E-35 257.0 29.5 313 79-411 6-330 (386)
5 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7E-35 265.7 26.1 390 40-468 103-536 (592)
6 2p1m_B Transport inhibitor res 100.0 2.6E-29 9E-34 257.6 29.7 385 40-467 96-528 (594)
7 3goz_A Leucine-rich repeat-con 100.0 6.5E-30 2.2E-34 245.0 23.1 301 137-442 2-311 (362)
8 3goz_A Leucine-rich repeat-con 100.0 9.8E-30 3.3E-34 243.8 22.7 280 132-411 21-309 (362)
9 3ogk_B Coronatine-insensitive 100.0 2.7E-28 9.1E-33 250.0 29.3 391 41-467 65-510 (592)
10 2p1m_B Transport inhibitor res 100.0 8.6E-28 3E-32 246.4 29.9 389 43-467 60-503 (594)
11 4fmz_A Internalin; leucine ric 99.9 3.8E-26 1.3E-30 217.9 19.6 305 47-458 42-346 (347)
12 4fmz_A Internalin; leucine ric 99.9 5.5E-26 1.9E-30 216.8 18.8 264 132-462 65-328 (347)
13 1o6v_A Internalin A; bacterial 99.9 1.2E-25 4.3E-30 222.9 18.6 327 46-461 65-391 (466)
14 3rgz_A Protein brassinosteroid 99.9 1.2E-29 4.2E-34 266.6 -13.1 260 161-460 394-719 (768)
15 1o6v_A Internalin A; bacterial 99.9 5.3E-25 1.8E-29 218.3 19.6 327 47-462 44-370 (466)
16 3t6q_A CD180 antigen; protein- 99.9 1.1E-28 3.7E-33 253.5 -8.8 66 45-118 77-142 (606)
17 3t6q_A CD180 antigen; protein- 99.9 2.7E-28 9.1E-33 250.7 -8.0 115 44-174 52-166 (606)
18 3rgz_A Protein brassinosteroid 99.9 2.8E-29 9.6E-34 263.9 -16.3 376 41-468 239-703 (768)
19 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-26 4.4E-31 233.6 3.1 366 44-459 40-482 (520)
20 4ecn_A Leucine-rich repeat pro 99.9 2.6E-26 8.9E-31 240.2 3.3 371 43-469 442-851 (876)
21 4eco_A Uncharacterized protein 99.9 1.1E-27 3.8E-32 246.1 -7.5 369 43-467 200-609 (636)
22 2z81_A CD282 antigen, TOLL-lik 99.9 5E-26 1.7E-30 230.9 4.5 115 45-174 46-161 (549)
23 3v47_A TOLL-like receptor 5B a 99.9 1.5E-26 5.1E-31 229.2 0.0 367 49-461 30-411 (455)
24 2z7x_B TOLL-like receptor 1, v 99.9 7E-26 2.4E-30 228.2 4.0 358 44-443 64-498 (520)
25 3v47_A TOLL-like receptor 5B a 99.9 1.8E-26 6E-31 228.7 -2.7 367 53-468 14-394 (455)
26 4ecn_A Leucine-rich repeat pro 99.9 3.8E-26 1.3E-30 239.0 -0.5 347 47-457 489-863 (876)
27 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-27 7.4E-32 243.9 -10.1 116 45-175 52-167 (606)
28 4eco_A Uncharacterized protein 99.9 2.1E-27 7E-32 244.2 -11.1 345 69-463 198-584 (636)
29 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-24 7.8E-29 218.7 9.1 115 44-173 69-184 (549)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-26 2.2E-30 230.5 -2.4 357 49-459 52-511 (562)
31 3un9_A NLR family member X1; l 99.9 4.1E-22 1.4E-26 190.1 23.4 211 217-430 72-285 (372)
32 1ziw_A TOLL-like receptor 3; i 99.9 8.4E-27 2.9E-31 242.7 -10.1 87 357-457 535-621 (680)
33 3o6n_A APL1; leucine-rich repe 99.9 6.7E-25 2.3E-29 212.7 2.4 316 48-435 44-359 (390)
34 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-26 1E-30 235.4 -7.6 96 44-150 75-170 (606)
35 3o6n_A APL1; leucine-rich repe 99.9 4.8E-25 1.6E-29 213.7 -0.1 318 76-468 44-362 (390)
36 1ziw_A TOLL-like receptor 3; i 99.9 7.6E-26 2.6E-30 235.5 -6.4 140 45-202 45-184 (680)
37 3un9_A NLR family member X1; l 99.9 4.6E-21 1.6E-25 182.9 23.7 210 189-402 72-286 (372)
38 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.8E-28 215.2 4.0 316 48-435 50-365 (597)
39 2z63_A TOLL-like receptor 4, v 99.9 9.6E-26 3.3E-30 230.0 -11.3 116 45-175 48-163 (570)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-23 3.5E-28 214.2 3.3 347 44-437 71-520 (562)
41 3j0a_A TOLL-like receptor 5; m 99.9 7.6E-25 2.6E-29 232.6 -5.8 311 46-400 45-395 (844)
42 2z63_A TOLL-like receptor 4, v 99.9 2.4E-25 8.1E-30 227.1 -10.2 137 49-204 28-164 (570)
43 2id5_A Lingo-1, leucine rich r 99.9 5.4E-25 1.9E-29 219.2 -7.9 109 303-428 225-333 (477)
44 2id5_A Lingo-1, leucine rich r 99.9 5.5E-25 1.9E-29 219.2 -8.1 302 106-459 33-334 (477)
45 3oja_B Anopheles plasmodium-re 99.9 1.3E-23 4.3E-28 214.8 1.6 316 76-465 50-365 (597)
46 2ast_B S-phase kinase-associat 99.9 5.9E-21 2E-25 181.1 19.6 217 215-466 91-314 (336)
47 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-22 5.6E-27 198.9 9.1 302 46-429 39-353 (457)
48 3j0a_A TOLL-like receptor 5; m 99.9 2.7E-24 9.4E-29 228.3 -9.0 380 44-467 68-502 (844)
49 2ast_B S-phase kinase-associat 99.8 1.6E-19 5.4E-24 171.2 23.7 158 247-429 143-307 (336)
50 3bz5_A Internalin-J, INLJ; leu 99.8 4.2E-22 1.4E-26 196.1 5.5 317 45-459 60-388 (457)
51 2z80_A TOLL-like receptor 2, v 99.8 3.2E-21 1.1E-25 184.1 2.1 275 106-441 53-329 (353)
52 1xku_A Decorin; proteoglycan, 99.8 1.8E-22 6.1E-27 191.0 -7.0 184 247-456 146-330 (330)
53 1xku_A Decorin; proteoglycan, 99.8 1.9E-21 6.6E-26 183.8 -0.6 133 77-230 52-184 (330)
54 1io0_A Tropomodulin; LRR prote 99.8 2.6E-18 9.1E-23 147.1 18.2 134 296-430 30-166 (185)
55 1io0_A Tropomodulin; LRR prote 99.8 2.9E-18 9.9E-23 146.9 17.8 146 263-410 25-173 (185)
56 2z80_A TOLL-like receptor 2, v 99.8 6.2E-21 2.1E-25 182.1 0.2 258 48-343 30-290 (353)
57 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-22 1.3E-26 206.1 -11.2 137 49-204 52-188 (635)
58 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-22 5E-27 191.6 -14.0 106 106-230 55-160 (332)
59 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-21 4.8E-26 184.9 -9.6 295 50-396 34-330 (332)
60 1jl5_A Outer protein YOPM; leu 99.8 1E-18 3.6E-23 171.7 9.2 279 49-428 71-350 (454)
61 1ogq_A PGIP-2, polygalacturona 99.8 7.4E-22 2.5E-26 184.9 -13.5 84 304-400 199-282 (313)
62 4g8a_A TOLL-like receptor 4; l 99.7 3E-21 1E-25 199.4 -11.2 385 44-467 71-590 (635)
63 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-20 3E-24 171.2 -0.5 126 247-394 145-270 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.7 8.3E-20 2.8E-24 171.4 -0.8 218 132-399 33-250 (317)
65 1jl5_A Outer protein YOPM; leu 99.7 4.5E-18 1.5E-22 167.2 11.6 281 49-429 91-371 (454)
66 1ogq_A PGIP-2, polygalacturona 99.7 1.5E-21 5.2E-26 182.8 -14.8 253 162-459 51-306 (313)
67 3g06_A SSPH2 (leucine-rich rep 99.7 9E-18 3.1E-22 170.2 11.3 284 49-425 40-325 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-17 4E-22 169.3 10.9 286 77-456 40-326 (622)
69 1pgv_A TMD-1, tropomodulin TMD 99.7 2.3E-16 7.8E-21 133.4 16.1 133 322-457 33-169 (197)
70 4glp_A Monocyte differentiatio 99.7 8.7E-19 3E-23 163.9 0.9 239 107-372 66-308 (310)
71 1pgv_A TMD-1, tropomodulin TMD 99.7 3.3E-16 1.1E-20 132.4 16.3 128 298-426 37-168 (197)
72 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5.1E-23 162.4 0.8 109 247-372 202-310 (312)
73 4fcg_A Uncharacterized protein 99.7 6.8E-19 2.3E-23 165.7 -1.9 129 247-397 184-312 (328)
74 4glp_A Monocyte differentiatio 99.7 1.8E-18 6.1E-23 161.8 0.7 93 133-230 64-158 (310)
75 1wwl_A Monocyte differentiatio 99.7 5.3E-18 1.8E-22 158.6 3.4 44 271-316 198-242 (312)
76 4fcg_A Uncharacterized protein 99.7 1.5E-19 5E-24 170.3 -8.5 235 132-428 80-314 (328)
77 2z66_A Variable lymphocyte rec 99.7 6.3E-20 2.2E-24 171.5 -12.1 113 301-428 149-261 (306)
78 2z66_A Variable lymphocyte rec 99.7 2.1E-19 7.1E-24 168.0 -8.7 233 189-459 28-262 (306)
79 3oja_A Leucine-rich immune mol 99.7 1.8E-17 6E-22 164.6 4.3 216 105-371 34-250 (487)
80 1ozn_A Reticulon 4 receptor; N 99.7 5.5E-18 1.9E-22 156.5 0.0 137 271-428 102-238 (285)
81 3zyj_A Leucine-rich repeat-con 99.7 2.3E-18 7.9E-23 169.3 -2.9 227 133-398 64-291 (440)
82 3zyi_A Leucine-rich repeat-con 99.7 2.9E-18 1E-22 169.1 -2.6 86 133-230 75-160 (452)
83 3zyj_A Leucine-rich repeat-con 99.7 3.2E-18 1.1E-22 168.3 -2.8 259 135-440 45-305 (440)
84 3oja_A Leucine-rich immune mol 99.7 1.6E-17 5.6E-22 164.8 1.9 218 47-315 32-250 (487)
85 1ozn_A Reticulon 4 receptor; N 99.7 4.8E-18 1.7E-22 156.9 -1.8 207 217-459 32-239 (285)
86 3zyi_A Leucine-rich repeat-con 99.6 2.8E-18 9.4E-23 169.3 -4.0 258 135-439 56-315 (452)
87 1h6u_A Internalin H; cell adhe 99.6 3.6E-16 1.2E-20 145.7 9.3 124 247-400 108-231 (308)
88 1h6u_A Internalin H; cell adhe 99.6 2.9E-16 9.9E-21 146.4 7.8 191 189-429 41-231 (308)
89 2z62_A TOLL-like receptor 4, v 99.6 8.9E-17 3.1E-21 147.6 -1.5 210 189-429 28-238 (276)
90 2z62_A TOLL-like receptor 4, v 99.6 1.2E-16 4.2E-21 146.7 -0.7 210 161-400 28-238 (276)
91 3rfs_A Internalin B, repeat mo 99.5 2E-15 6.9E-20 138.1 1.5 15 329-343 180-194 (272)
92 3rfs_A Internalin B, repeat mo 99.5 2.1E-15 7.3E-20 138.0 1.5 178 133-343 41-218 (272)
93 1h6t_A Internalin B; cell adhe 99.5 1.3E-14 4.3E-19 134.0 6.6 170 216-429 45-214 (291)
94 1p9a_G Platelet glycoprotein I 99.5 3.3E-16 1.1E-20 144.5 -4.8 218 186-444 7-225 (290)
95 1p9a_G Platelet glycoprotein I 99.5 1.3E-15 4.4E-20 140.5 -1.0 189 190-411 32-221 (290)
96 2o6q_A Variable lymphocyte rec 99.5 4.2E-16 1.4E-20 142.6 -4.5 203 190-429 17-219 (270)
97 2o6q_A Variable lymphocyte rec 99.5 1E-15 3.4E-20 140.0 -2.5 163 213-400 57-219 (270)
98 1h6t_A Internalin B; cell adhe 99.5 4.6E-14 1.6E-18 130.3 8.4 152 214-402 65-216 (291)
99 3m19_A Variable lymphocyte rec 99.5 3.7E-15 1.3E-19 134.7 -1.0 193 218-443 15-209 (251)
100 4ezg_A Putative uncharacterize 99.4 4.4E-14 1.5E-18 122.5 4.2 111 270-400 62-173 (197)
101 1m9s_A Internalin B; cell inva 99.4 5E-14 1.7E-18 142.6 4.7 171 215-429 41-211 (605)
102 4ezg_A Putative uncharacterize 99.4 8.4E-14 2.9E-18 120.7 5.4 110 213-343 84-194 (197)
103 2ra8_A Uncharacterized protein 99.4 4.4E-13 1.5E-17 126.6 9.4 145 301-456 192-341 (362)
104 1m9s_A Internalin B; cell inva 99.4 2.3E-13 7.7E-18 137.8 7.0 168 161-371 43-210 (605)
105 3m19_A Variable lymphocyte rec 99.4 4.6E-15 1.6E-19 134.1 -5.0 180 247-460 15-194 (251)
106 1xeu_A Internalin C; cellular 99.4 3.5E-14 1.2E-18 128.9 -0.9 124 247-401 42-165 (263)
107 2ra8_A Uncharacterized protein 99.4 7.2E-13 2.5E-17 125.1 8.0 79 330-409 252-330 (362)
108 3cvr_A Invasion plasmid antige 99.3 2.2E-13 7.4E-18 136.4 2.6 195 189-439 59-254 (571)
109 3cvr_A Invasion plasmid antige 99.3 4.1E-13 1.4E-17 134.4 1.6 135 133-315 59-193 (571)
110 2xwt_C Thyrotropin receptor; s 99.3 4.9E-14 1.7E-18 126.3 -5.3 35 134-172 32-66 (239)
111 2xwt_C Thyrotropin receptor; s 99.3 6.2E-14 2.1E-18 125.6 -4.8 84 106-201 32-117 (239)
112 1xeu_A Internalin C; cellular 99.3 1.5E-12 5E-17 118.2 3.9 124 247-401 64-187 (263)
113 3e6j_A Variable lymphocyte rec 99.2 1.1E-12 3.7E-17 116.5 -0.6 145 274-440 40-186 (229)
114 1dce_A Protein (RAB geranylger 99.2 7.5E-14 2.6E-18 140.4 -9.6 107 275-401 442-548 (567)
115 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5.2E-16 101.2 5.9 85 247-344 18-102 (149)
116 2je0_A Acidic leucine-rich nuc 99.2 1.8E-11 6.1E-16 100.7 5.4 112 274-401 17-128 (149)
117 2ell_A Acidic leucine-rich nuc 99.2 6.2E-12 2.1E-16 105.8 1.7 39 272-316 47-85 (168)
118 2xot_A Amphoterin-induced prot 99.1 1.7E-12 5.9E-17 123.7 -2.5 183 219-429 20-203 (361)
119 2o6s_A Variable lymphocyte rec 99.1 5.2E-13 1.8E-17 116.8 -5.8 159 274-466 28-186 (208)
120 2ell_A Acidic leucine-rich nuc 99.1 8.4E-12 2.9E-16 105.0 1.7 111 274-400 24-134 (168)
121 2xot_A Amphoterin-induced prot 99.1 4.7E-12 1.6E-16 120.7 -0.2 181 192-400 21-203 (361)
122 2v9t_B SLIT homolog 2 protein 99.1 1.4E-12 5E-17 114.9 -4.2 124 300-440 54-178 (220)
123 1dce_A Protein (RAB geranylger 99.1 4.6E-13 1.6E-17 134.7 -8.4 126 247-393 442-567 (567)
124 3e6j_A Variable lymphocyte rec 99.1 1.5E-11 5.3E-16 109.0 1.8 143 247-410 41-185 (229)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 2.5E-12 8.6E-17 113.3 -4.3 112 300-428 55-166 (220)
126 1ds9_A Outer arm dynein; leuci 99.1 5.4E-12 1.8E-16 109.3 -3.1 137 297-459 43-186 (198)
127 2v70_A SLIT-2, SLIT homolog 2 99.0 2.7E-12 9.3E-17 113.1 -5.5 154 277-459 14-167 (220)
128 4b8c_D Glucose-repressible alc 99.0 1.7E-11 5.8E-16 127.2 -1.0 117 211-348 218-334 (727)
129 2v9t_B SLIT homolog 2 protein 99.0 1.5E-11 5.3E-16 108.3 -1.6 143 247-409 33-176 (220)
130 1a9n_A U2A', U2A'; complex (nu 99.0 1E-10 3.5E-15 99.1 3.4 13 247-259 20-32 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.0 8.4E-11 2.9E-15 99.6 2.9 109 215-342 17-125 (176)
132 1ds9_A Outer arm dynein; leuci 99.0 7.9E-12 2.7E-16 108.3 -3.9 36 247-288 94-129 (198)
133 3e4g_A ATP synthase subunit S, 99.0 1.9E-10 6.5E-15 95.3 3.9 94 302-403 61-157 (176)
134 3e4g_A ATP synthase subunit S, 99.0 2.8E-10 9.5E-15 94.3 4.6 91 331-430 62-155 (176)
135 2o6s_A Variable lymphocyte rec 99.0 4.3E-11 1.5E-15 104.5 -0.7 113 271-399 49-161 (208)
136 4b8c_D Glucose-repressible alc 99.0 1.6E-11 5.4E-16 127.4 -4.6 114 155-289 218-331 (727)
137 1w8a_A SLIT protein; signaling 98.8 1.8E-10 6.2E-15 99.0 -3.7 110 275-399 30-139 (192)
138 2wfh_A SLIT homolog 2 protein 98.8 4.3E-10 1.5E-14 96.7 -2.0 60 275-343 32-91 (193)
139 1w8a_A SLIT protein; signaling 98.8 1.9E-10 6.6E-15 98.8 -4.2 140 277-439 11-151 (192)
140 2wfh_A SLIT homolog 2 protein 98.7 3.9E-10 1.3E-14 96.9 -2.5 139 277-440 13-152 (193)
141 3sb4_A Hypothetical leucine ri 98.7 3.7E-10 1.3E-14 106.0 -5.4 278 106-435 26-317 (329)
142 2o6r_A Variable lymphocyte rec 98.7 1.2E-09 4.1E-14 92.6 -2.0 15 301-315 51-65 (177)
143 2o6r_A Variable lymphocyte rec 98.6 1.5E-09 5.3E-14 91.9 -2.3 144 276-443 9-154 (177)
144 3sb4_A Hypothetical leucine ri 98.6 7.2E-10 2.5E-14 104.1 -4.8 271 161-470 25-322 (329)
145 4ay9_X Follicle-stimulating ho 98.6 4.3E-11 1.5E-15 113.5 -14.1 239 135-425 11-256 (350)
146 4ay9_X Follicle-stimulating ho 98.5 1.3E-10 4.4E-15 110.2 -13.5 184 217-430 30-217 (350)
147 3g39_A Variable lymphocyte rec 98.4 3.6E-08 1.2E-12 82.7 0.0 13 302-314 54-66 (170)
148 3g39_A Variable lymphocyte rec 98.4 2.6E-08 8.8E-13 83.6 -1.1 77 358-443 54-132 (170)
149 2r9u_A Variable lymphocyte rec 98.4 4.7E-08 1.6E-12 82.2 -0.2 51 385-440 80-132 (174)
150 2r9u_A Variable lymphocyte rec 98.2 8.5E-08 2.9E-12 80.7 -1.7 38 358-399 81-118 (174)
151 3rw6_A Nuclear RNA export fact 97.7 0.00012 4E-09 65.4 9.4 67 271-343 167-233 (267)
152 2ifg_A High affinity nerve gro 97.7 4.8E-06 1.7E-10 78.5 0.3 61 247-315 32-93 (347)
153 3rw6_A Nuclear RNA export fact 97.7 2.9E-05 9.8E-10 69.3 5.2 85 246-336 170-257 (267)
154 2ifg_A High affinity nerve gro 97.7 6.6E-06 2.3E-10 77.5 0.9 105 248-371 10-116 (347)
155 4fdw_A Leucine rich hypothetic 97.6 3.7E-07 1.3E-11 87.6 -9.9 272 132-459 112-384 (401)
156 4fdw_A Leucine rich hypothetic 97.0 1.1E-05 3.6E-10 77.5 -6.6 247 48-344 112-359 (401)
157 4fs7_A Uncharacterized protein 96.8 5.5E-06 1.9E-10 79.5 -10.7 38 45-87 67-104 (394)
158 4fs7_A Uncharacterized protein 96.4 2E-06 6.8E-11 82.6 -16.9 308 72-455 66-376 (394)
159 4gt6_A Cell surface protein; l 95.9 0.00052 1.8E-08 65.7 -2.7 312 46-427 60-390 (394)
160 4gt6_A Cell surface protein; l 87.3 0.3 1E-05 46.2 3.0 128 212-369 260-389 (394)
161 3rfe_A Platelet glycoprotein I 79.7 0.49 1.7E-05 36.7 0.7 13 386-398 55-67 (130)
162 3rfe_A Platelet glycoprotein I 79.0 0.62 2.1E-05 36.1 1.2 37 302-342 31-67 (130)
163 4h09_A Hypothetical leucine ri 71.9 0.16 5.6E-06 47.8 -4.8 82 300-395 238-319 (379)
164 4h09_A Hypothetical leucine ri 66.5 0.29 9.8E-06 46.1 -4.4 35 45-86 42-78 (379)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.9e-45 Score=361.78 Aligned_cols=414 Identities=26% Similarity=0.376 Sum_probs=235.9
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|+++++.+++..+..+ +..+++|++|++++|++++.++..++..+..+++|++|++++|.+++.++..+...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHH---HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHH---HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 345566666666555543322 22335566666666666655555555555555666666666666555554444443
Q ss_pred HHhCC-CcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhc-CCCccEEEcCCCCCChHHH
Q 011480 129 LVDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGA 206 (484)
Q Consensus 129 l~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~~~~~~~ 206 (484)
+.... +|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...++..+.. .++|++|++++|.++....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 32211 466666666666655555555555555666666666666655555555544332 3456666666666655555
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCC
Q 011480 207 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 286 (484)
Q Consensus 207 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l 286 (484)
..++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++.+...++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 55555555566666666666665555555555544433345666666666666555555555555666666666666666
Q ss_pred CcHHHHHHHHHHH-hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhC-CCcCEEe
Q 011480 287 GDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLK 364 (484)
Q Consensus 287 ~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~-~~L~~L~ 364 (484)
++.++..++..+. .+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+... ++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 5555555544443 2456666666666666665555555555566666666666666555555555544432 3666666
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCc
Q 011480 365 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 444 (484)
Q Consensus 365 l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~ 444 (484)
+++|.+++.+...+...+..+++|+.|++++|.+++.++..+...+...+++|++|++++|++++.++..+...+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 66666665555555555556666666666666666665555555544333456666666666666666666665555554
Q ss_pred cceeEeeccCCcCchhhhhhhhh
Q 011480 445 VAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 445 ~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
|++|++++|++++.++..+.+
T Consensus 400 --L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 400 --LRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp --CCEEECCSSSCCHHHHHHHHH
T ss_pred --ccEEECCCCCCCHHHHHHHHH
Confidence 666666666666666555554
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.5e-43 Score=346.37 Aligned_cols=430 Identities=19% Similarity=0.260 Sum_probs=379.4
Q ss_pred HHHHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCC-CCCEEecCCCC
Q 011480 38 KQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNP 116 (484)
Q Consensus 38 ~~~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~-~L~~L~L~~~~ 116 (484)
......++..+++|++|++++|.+++..+..++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.
T Consensus 17 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 17 DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 34466778889999999999999999999999999999999999999999999888888887666444 79999999999
Q ss_pred CChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhc-CCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEE
Q 011480 117 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLH 195 (484)
Q Consensus 117 i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ 195 (484)
+++.++..+...+..+++|++|++++|.+++.++..++..+.. .++|++|++++|.++..+...++..+..+++|++|+
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 9999999999999999999999999999999888888887654 568999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHhh-cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHh-cC
Q 011480 196 LNGNYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NC 273 (484)
Q Consensus 196 l~~~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~-~~ 273 (484)
+++|.++......+...+. ..++|++|++++|.+++.++..+...+... ++|++|++++|.+++.+...+...+. .+
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCC
Confidence 9999998888777777665 466999999999999998877777766543 48999999999999988877776665 58
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcC-CCcCEEECCCCCCChhHHHHHHH
Q 011480 274 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSE 352 (484)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~-~~L~~L~ls~n~i~~~~~~~l~~ 352 (484)
++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+... ++|++|++++|.+++.+...+..
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888887655 69999999999999999999999
Q ss_pred HHHhCCCcCEEeccCCCCChhHHHHHHHHHHc-CCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhH
Q 011480 353 VLKFHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 431 (484)
Q Consensus 353 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 431 (484)
.+..+++|++|++++|.+++.+...+.+.+.. +++|+.|++++|.+++.|...+...+.. .++|++|++++|+|++.+
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHH
Confidence 99999999999999999999988888887765 7899999999999999999988888765 489999999999999999
Q ss_pred HHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhhhh
Q 011480 432 AFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 470 (484)
Q Consensus 432 ~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~~~ 470 (484)
+..+.+.++... ..++.|.+.++.+.....+.+.....
T Consensus 415 ~~~l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~ 452 (461)
T 1z7x_W 415 ILQLVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEK 452 (461)
T ss_dssp HHHHHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cchhheeecccccCHHHHHHHHHHhc
Confidence 999999987544 36999999998888766666554443
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=4.7e-31 Score=255.55 Aligned_cols=301 Identities=22% Similarity=0.276 Sum_probs=175.0
Q ss_pred cCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCC------chHHHHHHHHH
Q 011480 112 LSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID------YSGFTSLAEAL 185 (484)
Q Consensus 112 L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~------~~~~~~l~~~l 185 (484)
+..+.+++.++..+...+..+++|++|++++|.++..++..++..+..+++|++|++++|.+. +.++..++.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333456666777777777777777777777777777777777776667777777777776443 23455555555
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHH
Q 011480 186 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 265 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 265 (484)
..+++|++|++++|.++..+...++..+..+++|++|++++|.+++.+...+...
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------------- 145 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA------------------------- 145 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-------------------------
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-------------------------
Confidence 6666666666666666655555555556666666666666666654444443333
Q ss_pred HHHHHhcC---------CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHH-HhhcCCCcCEE
Q 011480 266 VAEYIKNC---------KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR-VLKDNSVITSL 335 (484)
Q Consensus 266 l~~~l~~~---------~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l~~~~~L~~L 335 (484)
+..+ ++|++|++++|.+++.++..++..+..+++|++|++++|++++.++..+.. .+..+++|++|
T Consensus 146 ----l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L 221 (386)
T 2ca6_A 146 ----LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221 (386)
T ss_dssp ----HHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred ----HHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE
Confidence 3333 555555555555555555555555555555555555555555555555554 55555555555
Q ss_pred ECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHc--CCCccEEEeccCCCCchhHHHHHHHHHhc
Q 011480 336 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY--NNTISILDLRANGLRDEGAKCLAQSFKVV 413 (484)
Q Consensus 336 ~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 413 (484)
+|++|.+++.+...+...+..+++|++|++++|.+++.+...++..+.. +++|+.|++++|.+++.|+..+...+...
T Consensus 222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 5555555555555555555555555556665555555555555555543 55566666666666655555555444222
Q ss_pred CccccEEEcCCCCCChhH--HHHHHHHHHh
Q 011480 414 NEALTSIDLAFNEIRDDG--AFAIAQALKA 441 (484)
Q Consensus 414 ~~~L~~L~l~~n~i~~~~--~~~l~~~l~~ 441 (484)
.++|+.|++++|+++..+ +..+...+++
T Consensus 302 l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 302 MPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp CTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred CCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 255666666666655554 3555555443
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=2.9e-31 Score=256.96 Aligned_cols=313 Identities=21% Similarity=0.270 Sum_probs=243.6
Q ss_pred cceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCC------hHHHHH
Q 011480 79 AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKA 152 (484)
Q Consensus 79 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~------~~~~~~ 152 (484)
++...+..+++++.++..+...+..+++|++|++++|.++..+...++..+..+++|++|++++|.+. +.++..
T Consensus 6 ~~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CTTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred ecCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 44556677788999999999999999999999999999999999999988888999999999997554 346777
Q ss_pred HHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChh
Q 011480 153 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDE 232 (484)
Q Consensus 153 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 232 (484)
++..+..+++|++|++++|.++..+...++..+..+++|++|++++|.++......++..+..+..
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~-------------- 151 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV-------------- 151 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh--------------
Confidence 888888999999999999999999988999999999999999999999987777777766554400
Q ss_pred HHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHH-HHHhCCCccEEEccC
Q 011480 233 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGG 311 (484)
Q Consensus 233 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l~~~~~L~~L~l~~ 311 (484)
..+. ...++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+.. .+..+++|++|++++
T Consensus 152 --~~~~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 152 --NKKA----KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp --HHHH----HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred --hhhc----ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC
Confidence 0000 011256666666666665555555666777777777887777777777666666 666777888888888
Q ss_pred CCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHh--CCCcCEEeccCCCCChhHHHHHHHHH-HcCCCc
Q 011480 312 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADML-RYNNTI 388 (484)
Q Consensus 312 ~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~--~~~L~~L~l~~~~i~~~~~~~l~~~l-~~~~~L 388 (484)
|.+++.+...++..+..+++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.+...++..+ ..+++|
T Consensus 226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence 888777777777777788888888888888888777777777755 77888888888888877777777776 446888
Q ss_pred cEEEeccCCCCchh--HHHHHHHHH
Q 011480 389 SILDLRANGLRDEG--AKCLAQSFK 411 (484)
Q Consensus 389 ~~L~l~~n~i~~~~--~~~l~~~~~ 411 (484)
+.|++++|.+++.+ +..+...+.
T Consensus 306 ~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 306 LFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp CEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred eEEEccCCcCCcchhHHHHHHHHhh
Confidence 88888888888777 466666553
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.1e-30 Score=265.72 Aligned_cols=390 Identities=16% Similarity=0.195 Sum_probs=260.2
Q ss_pred HHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCC-CCHHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 011480 40 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPIG 118 (484)
Q Consensus 40 ~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~ 118 (484)
.+..+...+++|++|+|+++.+++.....++..+. .+|++|++++|. +++.++. .....+++|++|+|++|.+.
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGLL---SIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHHH---HHHHHCTTCSEEECTTCEEE
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHHH---HHHhhCCCCCEEECcccccc
Confidence 34455556666777777776666666555554321 137777776664 3333333 33345566777777777665
Q ss_pred hhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCC
Q 011480 119 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 198 (484)
Q Consensus 119 ~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~ 198 (484)
+.+...+...+..+++|++|+++++.++......+...+..+++|++|++++|.+.. ++..+..+++|+.|.++.
T Consensus 178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECB
T ss_pred CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccc
Confidence 555444555555567777777777766533344555556666777777777766532 334455566666666642
Q ss_pred CCCC----------------------hHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCC
Q 011480 199 NYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 256 (484)
Q Consensus 199 ~~~~----------------------~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~ 256 (484)
.... ......++..+..+++|++|++++|.+++.++..+.. ..++|++|+++ +
T Consensus 253 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~----~~~~L~~L~L~-~ 327 (592)
T 3ogk_B 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ----KCPNLEVLETR-N 327 (592)
T ss_dssp CCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT----TCTTCCEEEEE-G
T ss_pred cccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH----hCcCCCEEecc-C
Confidence 1100 0011223344566778888899888887776654433 33478888888 4
Q ss_pred CCChhhHHHHHHHHhcCCCCcEEEcCC-----------CCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHH
Q 011480 257 SISAKGAFHVAEYIKNCKSLLWINLYM-----------NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 257 ~i~~~~~~~l~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
.+.+.+ +......+++|++|++++ +.+++.++..+. ..+++|++|+++.+.+++.++..+...
T Consensus 328 ~~~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 328 VIGDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp GGHHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred ccCHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHhh
Confidence 444443 344456788999999993 578877665543 347899999998899998877766553
Q ss_pred hhcCCCcCEEECC----CCCCChh----HHHHHHHHHHhCCCcCEEeccCCC--CChhHHHHHHHHHHcCCCccEEEecc
Q 011480 326 LKDNSVITSLDLA----YNPIGAD----GAKALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRA 395 (484)
Q Consensus 326 l~~~~~L~~L~ls----~n~i~~~----~~~~l~~~~~~~~~L~~L~l~~~~--i~~~~~~~l~~~l~~~~~L~~L~l~~ 395 (484)
+++|++|+++ .+.+++. ++..+ +..+++|++|++++|. +++.+...+. ..+++|+.|++++
T Consensus 402 ---~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~---~~~~~~L~~L~L~~~~~~l~~~~~~~~~---~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 402 ---LKNLCDFRLVLLDREERITDLPLDNGVRSL---LIGCKKLRRFAFYLRQGGLTDLGLSYIG---QYSPNVRWMLLGY 472 (592)
T ss_dssp ---CCSCCEEEEEECSCCSCCSSCCCHHHHHHH---HHHCTTCCEEEEECCGGGCCHHHHHHHH---HSCTTCCEEEECS
T ss_pred ---CCCCcEEEEeecCCCccccCchHHHHHHHH---HHhCCCCCEEEEecCCCCccHHHHHHHH---HhCccceEeeccC
Confidence 6899999996 5667653 44433 4557899999998654 7776555443 4479999999999
Q ss_pred CCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 396 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 396 n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
|.+++.++..+...+ ++|++|+|++|.+++.++..+... +++ |++|++++|++++.+.+.++..
T Consensus 473 n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~---l~~--L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 473 VGESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTK---LPS--LRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp CCSSHHHHHHHHTCC----TTCCEEEEESCCCBHHHHHHHHHH---CSS--CCEEEEESCBCCTTCTTGGGGC
T ss_pred CCCCHHHHHHHHhcC----cccCeeeccCCCCcHHHHHHHHHh---cCc--cCeeECcCCcCCHHHHHHHHHh
Confidence 999998877654432 789999999999998888777543 454 9999999999999999888754
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2.6e-29 Score=257.62 Aligned_cols=385 Identities=16% Similarity=0.183 Sum_probs=257.6
Q ss_pred HHHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccC-CCCHHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 011480 40 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPIG 118 (484)
Q Consensus 40 ~l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~ 118 (484)
.+..+...+++|++|+++++.+++..+..++. .+++|++|++++| .+++.++..+ ...+++|++|++++|.++
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK---SFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH---HCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEE
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH---hCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccC
Confidence 34555667777888888877777776655543 2577888888777 5655444443 345667778887777665
Q ss_pred hhHHHHHHHHHHhCCCcCEEEeeccC--CChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEc
Q 011480 119 DEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 196 (484)
Q Consensus 119 ~~~~~~l~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l 196 (484)
+.+...+......+++|++|++++|. ++.. .+......+++|++|++++|.. ...++..+..+++|+.|.+
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFS---ALERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEEC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccCCcCCHH---HHHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEccc
Confidence 54444444444446677777777775 4433 3444444567788888777632 1235555666677777765
Q ss_pred CCCC--CChHHHHHHHH------------------------HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceE
Q 011480 197 NGNY--GGALGANALAK------------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 250 (484)
Q Consensus 197 ~~~~--~~~~~~~~l~~------------------------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~ 250 (484)
..+. +.......++. .+..+++|++|++++|.+++.++..+.. ..++|++
T Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~----~~~~L~~ 318 (594)
T 2p1m_B 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC----QCPKLQR 318 (594)
T ss_dssp SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT----TCTTCCE
T ss_pred ccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh----cCCCcCE
Confidence 5442 22222222222 2234567888888888877766554443 3347888
Q ss_pred EEccCCCCChhhHHHHHHHHhcCCCCcEEEc---------CCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHH
Q 011480 251 LDIGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 321 (484)
Q Consensus 251 L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l---------~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~ 321 (484)
|++++| +.+.+ +......+++|++|++ ..+.+++.++..+.. .+++|++|.+..+.+++.++..
T Consensus 319 L~l~~~-~~~~~---l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 319 LWVLDY-IEDAG---LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp EEEEGG-GHHHH---HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHH
T ss_pred EeCcCc-cCHHH---HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHH
Confidence 888887 44433 3333456888999988 335777776655443 4688888988888898877666
Q ss_pred HHHHhhcCCCcCEEECC--C----CCCC----hhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEE
Q 011480 322 IARVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 391 (484)
Q Consensus 322 l~~~l~~~~~L~~L~ls--~----n~i~----~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L 391 (484)
+... +++|+.|+++ + +.++ +.++..+ +..+++|++|++++ .+++.+...+.. .+++|+.|
T Consensus 392 l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L 461 (594)
T 2p1m_B 392 IARN---RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI---VEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEML 461 (594)
T ss_dssp HHHH---CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH---HHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEE
T ss_pred HHhh---CCCcceeEeecccCCCcccccCCchhhHHHHH---HhhCCCccEEeecC-cccHHHHHHHHH---hchhccEe
Confidence 6543 6899999998 3 4566 4454443 45678999999987 777776665554 36899999
Q ss_pred EeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhh
Q 011480 392 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 392 ~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
++++|.+++.++..+...+ ++|++|+|++|.+++.+...+... ++ .|+.|++++|.++..+.+.++.
T Consensus 462 ~L~~~~i~~~~~~~l~~~~----~~L~~L~L~~n~~~~~~~~~~~~~---l~--~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGC----DSLRKLEIRDCPFGDKALLANASK---LE--TMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp EEESCCSSHHHHHHHHHHC----TTCCEEEEESCSCCHHHHHHTGGG---GG--GSSEEEEESSCCBHHHHHHHHH
T ss_pred eccCCCCcHHHHHHHHhcC----CCcCEEECcCCCCcHHHHHHHHHh---CC--CCCEEeeeCCCCCHHHHHHHHH
Confidence 9999999998888775543 779999999999988877766533 34 4999999999999888888854
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=6.5e-30 Score=245.01 Aligned_cols=301 Identities=21% Similarity=0.268 Sum_probs=249.7
Q ss_pred EEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCC-CccEEEcCCCCCChHHHHHHHHHhhc
Q 011480 137 RLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGALGANALAKGLEG 215 (484)
Q Consensus 137 ~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~l~~ 215 (484)
.++++.+.+++. ++..+...++|++|++++|.+++.+...+...+..++ +|++|++++|.++......+...+..
T Consensus 2 ~~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 356788888764 4455555566999999999998888888888888888 89999999999888777778777777
Q ss_pred C-CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhc-CCCCcEEEcCCCCCCcHHHHH
Q 011480 216 N-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN-CKSLLWINLYMNDIGDEGAEK 293 (484)
Q Consensus 216 ~-~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~ 293 (484)
. ++|++|++++|.+++.+...+...+....++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.+...
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 6 89999999999988877777777776553589999999999998888788877877 468999999999999888888
Q ss_pred HHHHHHhCC-CccEEEccCCCCChhHHHHHHHHhhcCC-CcCEEECCCCCCChhHHHHHHHHHHh-CCCcCEEeccCCCC
Q 011480 294 IADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNS-VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQI 370 (484)
Q Consensus 294 l~~~l~~~~-~L~~L~l~~~~l~~~~~~~l~~~l~~~~-~L~~L~ls~n~i~~~~~~~l~~~~~~-~~~L~~L~l~~~~i 370 (484)
++..+...+ +|++|++++|++++.+...++..+..++ +|++|++++|.+++.++..+...+.. +++|++|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 888887765 8999999999999888888888888884 99999999999999888888888777 45999999999999
Q ss_pred ChhHHHHHHHHHHcCCCccEEEeccCC---CCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhC
Q 011480 371 GASGAEFVADMLRYNNTISILDLRANG---LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 442 (484)
Q Consensus 371 ~~~~~~~l~~~l~~~~~L~~L~l~~n~---i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~ 442 (484)
++.+...+...+..+++|+.|++++|. +++.+...+...+.. .++|+.|++++|++.+.....+...+++.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~~~~~~~l~~~ 311 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHSIPISNLIREL 311 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcchHHHHHHHHHC
Confidence 988888888888888999999999997 777777766666543 36799999999999988777777776543
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=9.8e-30 Score=243.80 Aligned_cols=280 Identities=17% Similarity=0.243 Sum_probs=182.0
Q ss_pred CCCcCEEEeeccCCChHHHHHHHHHHhcCC-CccEEEccCCCCCchHHHHHHHHHhcC-CCccEEEcCCCCCChHHHHHH
Q 011480 132 NAGVERLQLSSVDLRDEGAKAIAELLKNNS-ILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 209 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~~l 209 (484)
.++|++|++++|.+++.+...++..+..++ +|++|++++|.+++.+...+...+... ++|++|++++|.++......+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 344555555555555555555555555555 555555555555555555555554444 556666666665555555555
Q ss_pred HHHhhcC-CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCC-CCcEEEcCCCCCC
Q 011480 210 AKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIG 287 (484)
Q Consensus 210 ~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~-~L~~L~l~~~~l~ 287 (484)
...+..+ ++|++|++++|.+++.+...+...+.....+|++|++++|.+++.+...++..+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 5555555 5666666666666665555555555432336777777777777666666666666665 6777777777777
Q ss_pred cHHHHHHHHHHHhC-CCccEEEccCCCCChhHHHHHHHHhhc-CCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEec
Q 011480 288 DEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 365 (484)
Q Consensus 288 ~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~l~~-~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l 365 (484)
+.+...+...+..+ ++|++|++++|.+++.++..++..+.. +++|++|++++|.+++.++..+...+..+++|++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 76666666666666 377777777777777777777777666 3577788887777777777777666666777888888
Q ss_pred cCCC---CChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHH
Q 011480 366 GWCQ---IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFK 411 (484)
Q Consensus 366 ~~~~---i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 411 (484)
++|. ++..+...+...+..+++|+.||+++|.+.+.+...+...++
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 8776 566666666666677777888888888888776666655543
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.7e-28 Score=250.05 Aligned_cols=391 Identities=15% Similarity=0.195 Sum_probs=290.1
Q ss_pred HHHHHHHcccceEEeCCCCCC-----------ChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCE
Q 011480 41 LNEFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKT 109 (484)
Q Consensus 41 l~~~~~~~~~l~~L~ls~~~~-----------~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~ 109 (484)
...++++++++++|+++++.. +......+......+++|++|++++|.+++.....+...+. .+|++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcE
Confidence 346778899999999977432 22223345555567899999999999999988888776532 24999
Q ss_pred EecCCCC-CChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcC
Q 011480 110 LNLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN 188 (484)
Q Consensus 110 L~L~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~ 188 (484)
|+++++. +...+ +......+++|++|++++|.+++.+...+......+++|++|+++++.+.......+...+..+
T Consensus 143 L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 143 LKLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp EEEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred EECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 9999875 44444 4444556899999999999887766555667777889999999999998744445666777789
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCC-------------------------ChhHHHHHHHhhcc
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI-------------------------GDEGIRALMSGLSS 243 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l-------------------------~~~~~~~~~~~l~~ 243 (484)
++|++|++++|.+.. ++..+..+++|++|+++.... ....+..+. .
T Consensus 220 ~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~----~ 290 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF----P 290 (592)
T ss_dssp TTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG----G
T ss_pred CCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH----h
Confidence 999999999987654 345567788888888863211 111122222 2
Q ss_pred CCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEcc-----------CC
Q 011480 244 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GN 312 (484)
Q Consensus 244 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~-----------~~ 312 (484)
..++|++|++++|.+++.. +...+..+++|+.|+++ +.+++.++..+ ...+++|++|+++ .+
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHH---HHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred hcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHH---HHhCCCCCEEEeecCccccccccccC
Confidence 2348999999999987764 33457889999999998 55666655444 3457899999999 46
Q ss_pred CCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEecc----CCCCChhHH-HHHHHHHHcCCC
Q 011480 313 NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGA-EFVADMLRYNNT 387 (484)
Q Consensus 313 ~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~----~~~i~~~~~-~~l~~~l~~~~~ 387 (484)
.+++.++..+.. .+++|++|+++.+.+++.++..+.. .+++|++|+++ .+.+++... ..+...+..+++
T Consensus 364 ~~~~~~~~~l~~---~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 364 LVSQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp CCCHHHHHHHHH---HCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred ccCHHHHHHHHh---hCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 888887766544 4799999999999999888776654 36899999997 456765211 124445667899
Q ss_pred ccEEEeccC--CCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhh
Q 011480 388 ISILDLRAN--GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 388 L~~L~l~~n--~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l 465 (484)
|+.|++++| .+++.++..+... .++|+.|++++|++++.++..+. ..+++ |++|++++|.+++.+...+
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~---~~~~~--L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQY----SPNVRWMLLGYVGESDEGLMEFS---RGCPN--LQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHS----CTTCCEEEECSCCSSHHHHHHHH---TCCTT--CCEEEEESCCCBHHHHHHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHh----CccceEeeccCCCCCHHHHHHHH---hcCcc--cCeeeccCCCCcHHHHHHH
Confidence 999999865 4899888777653 27799999999999988777664 44554 9999999999998887776
Q ss_pred hh
Q 011480 466 TD 467 (484)
Q Consensus 466 ~~ 467 (484)
..
T Consensus 509 ~~ 510 (592)
T 3ogk_B 509 VT 510 (592)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=8.6e-28 Score=246.36 Aligned_cols=389 Identities=15% Similarity=0.188 Sum_probs=284.7
Q ss_pred HHHHHcccceEEeCCCCCC-Chh----------HHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEe
Q 011480 43 EFAKELRAFSSVDMSGRNF-GDE----------GLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLN 111 (484)
Q Consensus 43 ~~~~~~~~l~~L~ls~~~~-~~~----------~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ 111 (484)
.++.+++++++|+++++.. .+. ....+......+++|++|++++|.+++..+..+.. .+++|++|+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~ 136 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK---SFKNFKVLV 136 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH---HCTTCCEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH---hCCCCcEEe
Confidence 5677899999999998652 111 12234555567899999999999999887776653 367899999
Q ss_pred cCCC-CCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCC--CCchHHHHHHHHHhcC
Q 011480 112 LSGN-PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAEALLEN 188 (484)
Q Consensus 112 L~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--l~~~~~~~l~~~l~~~ 188 (484)
++++ .++..++.. .+..+++|++|++++|.+++.+...+......+++|++|+++++. ++...+ ...+..+
T Consensus 137 L~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l---~~l~~~~ 210 (594)
T 2p1m_B 137 LSSCEGFSTDGLAA---IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL---ERLVTRC 210 (594)
T ss_dssp EESCEEEEHHHHHH---HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH---HHHHHHC
T ss_pred CCCcCCCCHHHHHH---HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH---HHHHHhC
Confidence 9998 666655443 444689999999999987766555565555577899999999996 554443 3444558
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCC--CChhHHHHHHHhhc-----------------------c
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS--IGDEGIRALMSGLS-----------------------S 243 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--l~~~~~~~~~~~l~-----------------------~ 243 (484)
++|++|++++|.. . ..++..+..+++|++|+++.+. +....+..+...+. .
T Consensus 211 ~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 211 PNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp TTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred CCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 9999999999832 1 2366778889999999976553 22222222221111 0
Q ss_pred CCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEc---------cCCCC
Q 011480 244 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDL---------GGNNI 314 (484)
Q Consensus 244 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l---------~~~~l 314 (484)
..++|++|++++|.+++.+ +...+..+++|++|++++| +++.++..+. ..+++|++|++ ..+.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~---~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLA---STCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHH---HHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred hhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHH---HhCCCCCEEEEecCcccccccCCCC
Confidence 1247999999999987754 4445678999999999988 6665544443 34789999998 44678
Q ss_pred ChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEecc--C----CCCChhH-HHHHHHHHHcCCC
Q 011480 315 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG--W----CQIGASG-AEFVADMLRYNNT 387 (484)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~--~----~~i~~~~-~~~l~~~l~~~~~ 387 (484)
++.++..+.. .+++|++|.++.+.+++.++..+.. .+++|++|+++ + +.+++.. ...+...+..+++
T Consensus 360 ~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 360 TEQGLVSVSM---GCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp CHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred CHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 8887766654 3699999999999999887766653 46899999999 3 4566211 1234445677899
Q ss_pred ccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhh
Q 011480 388 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 388 L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
|+.|++++ .+++.++..+... .++|+.|++++|.+++.++..+... +++ |+.|++++|.+++.+...+..
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~----~~~L~~L~L~~~~i~~~~~~~l~~~---~~~--L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTY----AKKMEMLSVAFAGDSDLGMHHVLSG---CDS--LRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHH----CTTCCEEEEESCCSSHHHHHHHHHH---CTT--CCEEEEESCSCCHHHHHHTGG
T ss_pred ccEEeecC-cccHHHHHHHHHh----chhccEeeccCCCCcHHHHHHHHhc---CCC--cCEEECcCCCCcHHHHHHHHH
Confidence 99999988 8999988887763 2789999999999999988887544 554 999999999998888776654
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.8e-26 Score=217.92 Aligned_cols=305 Identities=21% Similarity=0.264 Sum_probs=134.7
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHH
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 126 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~ 126 (484)
.++++++|+++++.+.+.. .+..+++|++|++++|.+++... +..+++|++|++++|.+...
T Consensus 42 ~l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccch------hhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 3455555555555554321 13445555555555555543221 33445555555555554432
Q ss_pred HHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHH
Q 011480 127 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 206 (484)
Q Consensus 127 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 206 (484)
..+..+++|++|++++|.+..... +..+++|++|++++|..... ...+..+++|+.|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 113334555555555555443211 33344555555555532111 0113344445555554444432211
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCC
Q 011480 207 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 286 (484)
Q Consensus 207 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l 286 (484)
+..+++ |++|++++|.+.+.. . +..+++|+.|++++|.+
T Consensus 173 ------~~~l~~-----------------------------L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 173 ------IANLTD-----------------------------LYSLSLNYNQIEDIS-----P-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp ------GGGCTT-----------------------------CSEEECTTSCCCCCG-----G-GGGCTTCCEEECCSSCC
T ss_pred ------hccCCC-----------------------------CCEEEccCCcccccc-----c-ccCCCccceeecccCCC
Confidence 334444 445555544444321 1 33444555555555544
Q ss_pred CcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEecc
Q 011480 287 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 366 (484)
Q Consensus 287 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~ 366 (484)
++... +..+++|++|++++|.++.... +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 212 ~~~~~------~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 212 TDITP------VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCCGG------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECC
T ss_pred CCCch------hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEcc
Confidence 43211 3334455555555555444211 33445555555555544432 112334455555555
Q ss_pred CCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccc
Q 011480 367 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 446 (484)
Q Consensus 367 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~ 446 (484)
+|.+++. ..+..+++|+.|++++|.+++.....+... ++|+.|++++|+++.... +...+ +
T Consensus 274 ~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~------~~~l~--~ 334 (347)
T 4fmz_A 274 SNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRP------LASLS--K 334 (347)
T ss_dssp SSCCCCC------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGG------GGGCT--T
T ss_pred CCccCCC------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-----ccCCEEEccCCccccccC------hhhhh--c
Confidence 5554442 123344555555555555555444333221 445555555555544322 22223 2
Q ss_pred eeEeeccCCcCc
Q 011480 447 VTSLNLANNFLT 458 (484)
Q Consensus 447 L~~l~l~~n~i~ 458 (484)
|++|++++|.|+
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 555555555543
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=5.5e-26 Score=216.77 Aligned_cols=264 Identities=21% Similarity=0.231 Sum_probs=185.6
Q ss_pred CCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHH
Q 011480 132 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 211 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 211 (484)
+++|++|++++|.++.... +..+++|++|++++|.+..- ..+..+++|++|++++|.++....
T Consensus 65 ~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~~n~i~~~~~----- 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISDISP----- 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECTTSCCCCCGG-----
T ss_pred cCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECcCCcccCchh-----
Confidence 4555555555555443211 33445566666666555431 134555666666666665543221
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
+..+++|+.|++++|..... +.. + ...++|++|++++|.+..... +..+++|++|++++|.+.+..
T Consensus 128 -~~~l~~L~~L~l~~n~~~~~-~~~----~-~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~- 193 (347)
T 4fmz_A 128 -LANLTKMYSLNLGANHNLSD-LSP----L-SNMTGLNYLTVTESKVKDVTP------IANLTDLYSLSLNYNQIEDIS- 193 (347)
T ss_dssp -GTTCTTCCEEECTTCTTCCC-CGG----G-TTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEECTTSCCCCCG-
T ss_pred -hccCCceeEEECCCCCCccc-ccc----h-hhCCCCcEEEecCCCcCCchh------hccCCCCCEEEccCCcccccc-
Confidence 45677777777777743221 111 1 233478888888888776422 678999999999999987642
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
. +..++.|+.|++++|.++.... +..+++|++|++++|.++.... +..+++|++|++++|.++
T Consensus 194 ----~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 194 ----P-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp ----G-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred ----c-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccC
Confidence 1 5678999999999999987533 6678999999999999886543 567799999999999988
Q ss_pred hhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEee
Q 011480 372 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 451 (484)
Q Consensus 372 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~ 451 (484)
+. ..+..+++|+.|++++|.+++.. .+. ..++|+.|++++|++++.....+.. ++ .|++|+
T Consensus 257 ~~------~~~~~l~~L~~L~l~~n~l~~~~------~~~-~l~~L~~L~L~~n~l~~~~~~~l~~----l~--~L~~L~ 317 (347)
T 4fmz_A 257 DI------NAVKDLTKLKMLNVGSNQISDIS------VLN-NLSQLNSLFLNNNQLGNEDMEVIGG----LT--NLTTLF 317 (347)
T ss_dssp CC------GGGTTCTTCCEEECCSSCCCCCG------GGG-GCTTCSEEECCSSCCCGGGHHHHHT----CT--TCSEEE
T ss_pred CC------hhHhcCCCcCEEEccCCccCCCh------hhc-CCCCCCEEECcCCcCCCcChhHhhc----cc--cCCEEE
Confidence 74 23567799999999999998852 122 2378999999999999877766654 34 499999
Q ss_pred ccCCcCchhhh
Q 011480 452 LANNFLTKFGQ 462 (484)
Q Consensus 452 l~~n~i~~~~~ 462 (484)
+++|+++....
T Consensus 318 L~~n~l~~~~~ 328 (347)
T 4fmz_A 318 LSQNHITDIRP 328 (347)
T ss_dssp CCSSSCCCCGG
T ss_pred ccCCccccccC
Confidence 99999988654
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.2e-25 Score=222.88 Aligned_cols=327 Identities=21% Similarity=0.220 Sum_probs=205.5
Q ss_pred HHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHH
Q 011480 46 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 125 (484)
Q Consensus 46 ~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l 125 (484)
..+++|++|++++|.+.+.. . +..+++|++|++++|.+..... +..+++|++|++++|.+.....
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--- 129 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDIDP--- 129 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG---
T ss_pred hhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCChH---
Confidence 34555666666665555432 1 4455566666666665543221 3445556666666665544321
Q ss_pred HHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHH
Q 011480 126 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 205 (484)
Q Consensus 126 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 205 (484)
+..+++|++|++++|.+.... .+..+++|++|+++++ +... ..+..+++|+.|++++|.++...
T Consensus 130 ---~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~------~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 130 ---LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDL------KPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp ---GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCC------GGGTTCTTCCEEECCSSCCCCCG
T ss_pred ---HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCc------hhhccCCCCCEEECcCCcCCCCh
Confidence 344566666666666554421 1344556666666432 2111 12556778888888888766432
Q ss_pred HHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCC
Q 011480 206 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 285 (484)
Q Consensus 206 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 285 (484)
.+..+++|++|++++|.+.+... + ...++|++|++++|.+... ..+..+++|+.|++++|.
T Consensus 194 ------~l~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 194 ------VLAKLTNLESLIATNNQISDITP------L-GILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp ------GGGGCTTCSEEECCSSCCCCCGG------G-GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSC
T ss_pred ------hhccCCCCCEEEecCCccccccc------c-cccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCc
Confidence 25677888888888887765321 1 1234788888888877763 235677888888888887
Q ss_pred CCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEec
Q 011480 286 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 365 (484)
Q Consensus 286 l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l 365 (484)
+++.. . +..+++|++|++++|.++.... +..+++|++|++++|.+.+... +..+++|+.|++
T Consensus 255 l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L 316 (466)
T 1o6v_A 255 ISNLA-----P-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTL 316 (466)
T ss_dssp CCCCG-----G-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEEC
T ss_pred cccch-----h-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEEC
Confidence 76632 1 5567888888888888776422 5567888888888887765432 456788888888
Q ss_pred cCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCcc
Q 011480 366 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 445 (484)
Q Consensus 366 ~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~ 445 (484)
++|.+++... +..+++|+.|++++|.+++.. . +.. .++|+.|++++|++++... +...+
T Consensus 317 ~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~--~----l~~-l~~L~~L~l~~n~l~~~~~------~~~l~-- 375 (466)
T 1o6v_A 317 YFNNISDISP------VSSLTKLQRLFFYNNKVSDVS--S----LAN-LTNINWLSAGHNQISDLTP------LANLT-- 375 (466)
T ss_dssp CSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG--G----GTT-CTTCCEEECCSSCCCBCGG------GTTCT--
T ss_pred cCCcCCCchh------hccCccCCEeECCCCccCCch--h----hcc-CCCCCEEeCCCCccCccch------hhcCC--
Confidence 8888776432 456788888888888887741 1 221 2678888888888876543 33444
Q ss_pred ceeEeeccCCcCchhh
Q 011480 446 AVTSLNLANNFLTKFG 461 (484)
Q Consensus 446 ~L~~l~l~~n~i~~~~ 461 (484)
+|+.|++++|.++..+
T Consensus 376 ~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 376 RITQLGLNDQAWTNAP 391 (466)
T ss_dssp TCCEEECCCEEEECCC
T ss_pred CCCEEeccCCcccCCc
Confidence 3888888888877743
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.2e-29 Score=266.62 Aligned_cols=260 Identities=23% Similarity=0.276 Sum_probs=177.2
Q ss_pred CCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh
Q 011480 161 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
+.|++|++++|.+.. .++..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+.....
T Consensus 394 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~---- 461 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIPQE---- 461 (768)
T ss_dssp CCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCCGG----
T ss_pred CCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCCHH----
Confidence 456666666666542 2344566778888888888766532 2344667788888888888776532211
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHH
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 320 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 320 (484)
+ ...++|++|++++|.+.+. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.++..
T Consensus 462 ~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 529 (768)
T 3rgz_A 462 L-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN--- 529 (768)
T ss_dssp G-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred H-cCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc---
Confidence 1 1234788888888888764 455677888899999998888754 444566778899999999988754
Q ss_pred HHHHHhhcCCCcCEEECCCCCCChhHHHHHHH------------------------------------------------
Q 011480 321 AIARVLKDNSVITSLDLAYNPIGADGAKALSE------------------------------------------------ 352 (484)
Q Consensus 321 ~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~------------------------------------------------ 352 (484)
+...+..+++|+.|++++|.+.......+..
T Consensus 530 -~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred -CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 3445667789999999988654221111100
Q ss_pred ------------------HHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcC
Q 011480 353 ------------------VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 414 (484)
Q Consensus 353 ------------------~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 414 (484)
.+...++|+.|++++|.+++..+ ..+..++.|+.|++++|.++......+...
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L----- 679 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDEVGDL----- 679 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCCccCCCCChHHhCC-----
Confidence 11224678899999998876433 345667899999999998887655555433
Q ss_pred ccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchh
Q 011480 415 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 460 (484)
Q Consensus 415 ~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~ 460 (484)
++|+.|++++|+++......+... + .|++|++++|+++..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l----~--~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSAL----T--MLTEIDLSNNNLSGP 719 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGC----C--CCSEEECCSSEEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCC----C--CCCEEECcCCccccc
Confidence 779999999998876544444333 3 599999999988753
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.3e-25 Score=218.34 Aligned_cols=327 Identities=21% Similarity=0.243 Sum_probs=256.8
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHH
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 126 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~ 126 (484)
.++++++|+++++.+.... .+..+++|++|++++|.++.... +..+++|++|++++|.+.....
T Consensus 44 ~l~~l~~L~l~~~~i~~l~------~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~---- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID------GVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITP---- 107 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG----
T ss_pred HhccccEEecCCCCCccCc------chhhhcCCCEEECCCCccCCchh------hhccccCCEEECCCCccccChh----
Confidence 3567999999998886532 35678999999999999875431 5678899999999998876432
Q ss_pred HHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHH
Q 011480 127 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 206 (484)
Q Consensus 127 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 206 (484)
+..+++|++|++++|.+..... +..+++|++|++++|.+..-. .+..+++|+.|+++++ +...
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~-- 170 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDL-- 170 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCC--
T ss_pred --hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCc--
Confidence 5667999999999999887432 667899999999999886521 3678899999999743 3321
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCC
Q 011480 207 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 286 (484)
Q Consensus 207 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l 286 (484)
..+..+++|++|++++|.+.+.. .+ ...++|++|++++|.+.+.. + +..+++|+.|++++|.+
T Consensus 171 ----~~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~~----~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 171 ----KPLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDIT----P--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp ----GGGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCCG----G--GGGCTTCCEEECCSSCC
T ss_pred ----hhhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCcccccc----c--ccccCCCCEEECCCCCc
Confidence 12678999999999999987642 12 23348999999999988742 1 67789999999999998
Q ss_pred CcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEecc
Q 011480 287 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 366 (484)
Q Consensus 287 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~ 366 (484)
++. ..+..+++|++|++++|.++.... +..+++|++|++++|.++.... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 873 235678999999999999987432 6778999999999999876432 4567999999999
Q ss_pred CCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccc
Q 011480 367 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 446 (484)
Q Consensus 367 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~ 446 (484)
+|.+++... +..+++|+.|++++|.+++... + . ..++|+.|++++|++++. ..+..+++
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~----~-~l~~L~~L~l~~n~l~~~------~~l~~l~~-- 354 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDISP--V----S-SLTKLQRLFFYNNKVSDV------SSLANLTN-- 354 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--G----G-GCTTCCEEECCSSCCCCC------GGGTTCTT--
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCchh--h----c-cCccCCEeECCCCccCCc------hhhccCCC--
Confidence 999876432 5678999999999999988653 2 1 237899999999999875 23445554
Q ss_pred eeEeeccCCcCchhhh
Q 011480 447 VTSLNLANNFLTKFGQ 462 (484)
Q Consensus 447 L~~l~l~~n~i~~~~~ 462 (484)
|+.|++++|++++...
T Consensus 355 L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP 370 (466)
T ss_dssp CCEEECCSSCCCBCGG
T ss_pred CCEEeCCCCccCccch
Confidence 9999999999987554
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.1e-28 Score=253.54 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 118 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~ 118 (484)
+..+++|++|++++|.+.... +..+..+++|++|++++|.++...... +..+++|++|++++|.+.
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMA----ETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEEC----TTTTSSCTTCCEEECTTSCCSCGGGSC----CTTCTTCCEEECCSSCCC
T ss_pred ccCccccCeeeCCCCcccccC----hhhhcccccccEeeccccCcccCCcch----hccCCcccEEECCCCccc
Confidence 345666777777776665431 223445566666666666554321111 233445555555555443
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.7e-28 Score=250.66 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=72.1
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|++++|.+.... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.+......
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~l~~~ 123 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTANPLIFMAE----TALSGPKALKHLFFIQTGISSIDFI 123 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCSEECT----TTTSSCTTCCEEECTTSCCSCGGGS
T ss_pred HhccCccceEEECCCCccceeC----hhhccCccccCeeeCCCCcccccCh----hhhcccccccEeeccccCcccCCcc
Confidence 3456788888888888876542 3445667888888888887754322 2345667888888888877653222
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCC
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID 174 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 174 (484)
. +..+++|++|++++|.+.......+ ..+++|++|++++|.+.
T Consensus 124 ~----~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 124 P----LHNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp C----CTTCTTCCEEECCSSCCCCCCCCTT----CCCTTCCEEECCSSCCC
T ss_pred h----hccCCcccEEECCCCcccccCcccc----cCCcccCEEEcccCccc
Confidence 2 3345677777777776654211111 11455666666666554
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.8e-29 Score=263.92 Aligned_cols=376 Identities=20% Similarity=0.155 Sum_probs=222.5
Q ss_pred HHHHHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChh
Q 011480 41 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 120 (484)
Q Consensus 41 l~~~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~ 120 (484)
+...+..+++|++|++++|.+..... . ..+++|++|++++|.++......+ ...+++|++|++++|.+...
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~----~--~~l~~L~~L~L~~n~l~~~ip~~~---~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIP----P--LPLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCC----C--CCCTTCCEEECCSSEEEESCCCCS---CTTCTTCSEEECCSSEEEEC
T ss_pred ccHHHhcCCCCCEEECCCCcccCccC----c--cccCCCCEEECcCCccCCccCHHH---HhhcCcCCEEECcCCcCCCc
Confidence 34556778899999999988753211 0 145667777777765432111111 01124566666666554322
Q ss_pred HHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHH-------------------
Q 011480 121 GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL------------------- 181 (484)
Q Consensus 121 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l------------------- 181 (484)
+...+..+++|++|++++|.+.+... ...+..+++|++|++++|.+.......+
T Consensus 310 ----~p~~~~~l~~L~~L~L~~n~l~~~ip---~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 310 ----VPPFFGSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp ----CCGGGGGCTTCCEEECCSSEEEEECC---HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred ----cchHHhcCCCccEEECCCCcccCcCC---HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 11223344556666666655442110 0113344555555555554431110111
Q ss_pred --HHHHhc--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCC
Q 011480 182 --AEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 257 (484)
Q Consensus 182 --~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 257 (484)
+..+.. +++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+..... + ...++|++|++++|.
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l-~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSS----L-GSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCCGG----G-GGCTTCCEEECCSSC
T ss_pred CcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCcccHH----H-hcCCCCCEEECCCCc
Confidence 111111 44566666666655432 2345667788888888887665321111 1 122378888888888
Q ss_pred CChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEEC
Q 011480 258 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 337 (484)
Q Consensus 258 i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l 337 (484)
+.+. ++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++.. +...+..+++|++|++
T Consensus 454 l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 454 LEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKL 521 (768)
T ss_dssp CCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEEC
T ss_pred ccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEEC
Confidence 7764 455567788888888888877754 344466778888888888888754 3345666788888888
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHH-------------------------------------
Q 011480 338 AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD------------------------------------- 380 (484)
Q Consensus 338 s~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~------------------------------------- 380 (484)
++|.+..... ..+..+++|+.|++++|.+++.-+..+..
T Consensus 522 ~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 522 SNNSFSGNIP----AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp CSSCCEEECC----GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred CCCcccCcCC----HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 8888764432 23456688888888888765321111110
Q ss_pred -----------------------------HHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhH
Q 011480 381 -----------------------------MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 431 (484)
Q Consensus 381 -----------------------------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 431 (484)
.+..+++|+.||+++|.++......+... +.|+.|++++|+++...
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-----PYLFILNLGHNDISGSI 672 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCSCC
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-----ccCCEEeCcCCccCCCC
Confidence 11224678889999998876655444332 77999999999888655
Q ss_pred HHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 432 AFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 432 ~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
...+... ..|+.||+++|+++....+.+..+
T Consensus 673 p~~l~~L------~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 673 PDEVGDL------RGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CGGGGGC------TTCCEEECCSSCCEECCCGGGGGC
T ss_pred ChHHhCC------CCCCEEECCCCcccCcCChHHhCC
Confidence 5444433 359999999999887666666544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.3e-26 Score=233.56 Aligned_cols=366 Identities=15% Similarity=0.140 Sum_probs=193.7
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|++++|.+.... +..+..+++|++|++++|+++.... . .+++|++|++++|.+....
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp~-----~--~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSHNKLVKISC-----H--PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCSSCCCEEEC-----C--CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCCCceeecCc-----c--ccCCccEEeccCCcccccc--
Confidence 3455677777777777766532 2345556777777777777653211 1 4566777777777665311
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCc--cEEEccCCCC--CchHHHHHHH----------------
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 183 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L--~~L~l~~~~l--~~~~~~~l~~---------------- 183 (484)
+...+..+++|++|++++|.++... +..++.| ++|++++|.+ .......+..
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 1123344577777777777776521 2233455 7777777665 2111011100
Q ss_pred ------HHhcCCCccEEEcCCCCC--ChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccC
Q 011480 184 ------ALLENSTIRSLHLNGNYG--GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 255 (484)
Q Consensus 184 ------~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~ 255 (484)
.+..+++|+.+++++|.. ...........+..+++|+.|+++++.+.+..+..+...... ++|++|++++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH--TTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT--SSCSEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh--CcccEEEeec
Confidence 011133444444444320 000111112245566666666666666655544444433221 1455555554
Q ss_pred CCCChh----------------------------hHHHHHHHH---------------------hcCCCCcEEEcCCCCC
Q 011480 256 NSISAK----------------------------GAFHVAEYI---------------------KNCKSLLWINLYMNDI 286 (484)
Q Consensus 256 ~~i~~~----------------------------~~~~l~~~l---------------------~~~~~L~~L~l~~~~l 286 (484)
|.+.+. ....+...+ ..+++|++|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 433310 001122221 3556677777777776
Q ss_pred CcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEecc
Q 011480 287 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 366 (484)
Q Consensus 287 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~ 366 (484)
++. ++..+..+++|++|++++|+++. +..++..+..+++|++|++++|.+....... .+...++|++|+++
T Consensus 337 ~~~----~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 337 TDT----VFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMS 407 (520)
T ss_dssp CTT----TTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECC
T ss_pred Chh----hhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECc
Confidence 653 22334456777777777777764 2224455566677777777777765421110 12234677777777
Q ss_pred CCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccc
Q 011480 367 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 446 (484)
Q Consensus 367 ~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~ 446 (484)
+|.+++.....+ .++|+.|++++|.++.... .+. ..++|++|++++|+++...... +...+ .
T Consensus 408 ~N~l~~~~~~~l------~~~L~~L~Ls~N~l~~ip~-~~~-----~l~~L~~L~L~~N~l~~l~~~~----~~~l~--~ 469 (520)
T 2z7x_B 408 SNILTDTIFRCL------PPRIKVLDLHSNKIKSIPK-QVV-----KLEALQELNVASNQLKSVPDGI----FDRLT--S 469 (520)
T ss_dssp SSCCCGGGGGSC------CTTCCEEECCSSCCCCCCG-GGG-----GCTTCCEEECCSSCCCCCCTTT----TTTCT--T
T ss_pred CCCCCcchhhhh------cccCCEEECCCCcccccch-hhh-----cCCCCCEEECCCCcCCccCHHH----hccCC--c
Confidence 777765322211 1577888888887774221 111 1267888888888777433221 23333 3
Q ss_pred eeEeeccCCcCch
Q 011480 447 VTSLNLANNFLTK 459 (484)
Q Consensus 447 L~~l~l~~n~i~~ 459 (484)
|++|++++|.++-
T Consensus 470 L~~L~l~~N~~~c 482 (520)
T 2z7x_B 470 LQKIWLHTNPWDC 482 (520)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEECcCCCCcc
Confidence 8888888887764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.6e-26 Score=240.19 Aligned_cols=371 Identities=14% Similarity=0.176 Sum_probs=261.2
Q ss_pred HHHHHcccceEEeCCCCCCChhH-------------HHHHHHHhc--cCCCcceEecccCCCCHHHHHHHHHHhhcCCCC
Q 011480 43 EFAKELRAFSSVDMSGRNFGDEG-------------LFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 43 ~~~~~~~~l~~L~ls~~~~~~~~-------------~~~l~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 107 (484)
..+..+++|++|+|++|.+.... -..++..+. .+++|+.|++++|.+.. .+...+..+++|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L 517 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPEL 517 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSC
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCC
Confidence 34677899999999999998721 113556655 88999999999998653 233456778899
Q ss_pred CEEecCCCC-CCh-hHHHHHHHH---HHhCCCcCEEEeeccCCChHHHHHHHH--HHhcCCCccEEEccCCCCCchHHHH
Q 011480 108 KTLNLSGNP-IGD-EGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGFTS 180 (484)
Q Consensus 108 ~~L~L~~~~-i~~-~~~~~l~~~---l~~~~~L~~L~l~~~~~~~~~~~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~ 180 (484)
++|++++|. ++. .-...+... +..+++|++|++++|.++. ++. .+..+++|++|++++|.+..
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~~----- 587 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRH----- 587 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCCB-----
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCccc-----
Confidence 999999998 876 433334332 1235699999999999883 334 56778999999999999862
Q ss_pred HHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-cCEEEccCCCCChhHHHHHHHhhccC-CCcceEEEccCCCC
Q 011480 181 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSR-KGKLAVLDIGNNSI 258 (484)
Q Consensus 181 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~~l~~~-~~~L~~L~l~~~~i 258 (484)
++ .+..+++|+.|++++|.++. ++..+..+++ |+.|++++|.+.. ++. .+... ..+|+.|++++|.+
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~--lp~---~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY--IPN---IFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS--CCS---CCCTTCSSCEEEEECCSSCT
T ss_pred ch-hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc--Cch---hhhccccCCCCEEECcCCcC
Confidence 23 67778999999999998872 3455778888 9999999998873 221 11111 12499999999998
Q ss_pred ChhhHHHHHHHHh--cCCCCcEEEcCCCCCCcHHHHHHHHH-HHhCCCccEEEccCCCCChhHHHHHHHH----hhcCCC
Q 011480 259 SAKGAFHVAEYIK--NCKSLLWINLYMNDIGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARV----LKDNSV 331 (484)
Q Consensus 259 ~~~~~~~l~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~~----l~~~~~ 331 (484)
.+... .++..+. .+++|+.|++++|.++. ++.. +..+++|+.|++++|.++..... +... +..+++
T Consensus 657 ~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 657 GSEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPEN-SLKPKDGNYKNTYL 729 (876)
T ss_dssp TTTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTT-SSSCTTSCCTTGGG
T ss_pred CCccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChH-HhccccccccccCC
Confidence 76310 0111112 33489999999999884 2333 34678999999999998842111 1110 112349
Q ss_pred cCEEECCCCCCChhHHHHHHHHHH--hCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEecc------CCCCchhH
Q 011480 332 ITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEGA 403 (484)
Q Consensus 332 L~~L~ls~n~i~~~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~------n~i~~~~~ 403 (484)
|++|+|++|.++.. ...+. .+++|+.|++++|.+++ ++..+..+++|+.|++++ |.+.....
T Consensus 730 L~~L~Ls~N~L~~l-----p~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 730 LTTIDLRFNKLTSL-----SDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp CCEEECCSSCCCCC-----CGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccEEECCCCCCccc-----hHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 99999999998732 23333 56899999999999876 344456789999999977 55554433
Q ss_pred HHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhhh
Q 011480 404 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 469 (484)
Q Consensus 404 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~~ 469 (484)
..+.. .++|+.|+|++|+++..... + .+ +|+.|++++|++.......+....
T Consensus 800 ~~l~~-----L~~L~~L~Ls~N~L~~Ip~~-l------~~--~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 800 TGITT-----CPSLIQLQIGSNDIRKVDEK-L------TP--QLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp TTGGG-----CSSCCEEECCSSCCCBCCSC-C------CS--SSCEEECCSCTTCEEECGGGHHHH
T ss_pred HHHhc-----CCCCCEEECCCCCCCccCHh-h------cC--CCCEEECCCCCCCccChHHccccc
Confidence 33322 27899999999998542221 1 12 599999999999888777765543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.1e-27 Score=246.14 Aligned_cols=369 Identities=17% Similarity=0.183 Sum_probs=262.1
Q ss_pred HHHHHcccceEEeCCCCCCChh-------------HHHHHHHHhc--cCCCcceEecccCCCCHHHHHHHHHHhhcCCCC
Q 011480 43 EFAKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIAL 107 (484)
Q Consensus 43 ~~~~~~~~l~~L~ls~~~~~~~-------------~~~~l~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 107 (484)
..+..+++|++|+|++|.+... ....++..+. .+++|++|++++|.+.. .+...+..+++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L 275 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEM 275 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSC
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCC
Confidence 4467789999999999999872 1122566767 89999999999998653 233455678899
Q ss_pred CEEecCCCC-CCh-hHHHHHHHH--HHhCCCcCEEEeeccCCChHHHHHHHH--HHhcCCCccEEEccCCCCCchHHHHH
Q 011480 108 KTLNLSGNP-IGD-EGVKCLCDI--LVDNAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGFTSL 181 (484)
Q Consensus 108 ~~L~L~~~~-i~~-~~~~~l~~~--l~~~~~L~~L~l~~~~~~~~~~~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l 181 (484)
++|++++|. ++. .-...+... +..+++|++|++++|.++. ++. .+..+++|++|++++|.+.. .+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g----~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEG----KL 346 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEE----EC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCcc----ch
Confidence 999999998 876 433333322 1234899999999999883 344 56778999999999999862 23
Q ss_pred HHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-cCEEEccCCCCChhHHHHHHHhhcc-CCCcceEEEccCCCCC
Q 011480 182 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSIS 259 (484)
Q Consensus 182 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~~~l~~-~~~~L~~L~l~~~~i~ 259 (484)
+ .+..+++|+.|++++|.++ .++..+..+++ |++|++++|.+.. ++. .+.. ...+|++|++++|.+.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~---~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLKY--IPN---IFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-----ECCTTSEEECTTCCEEECCSSCCSS--CCS---CCCTTCSSCEEEEECCSSCTT
T ss_pred h-hhCCCCCCCEEECCCCccc-----cccHhhhhhcccCcEEEccCCcCcc--cch---hhhhcccCccCEEECcCCcCC
Confidence 3 5677889999999999876 33455778888 9999999999873 221 1111 1237999999999998
Q ss_pred hhhHHHHHHHHh-------cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHH---hhcC
Q 011480 260 AKGAFHVAEYIK-------NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV---LKDN 329 (484)
Q Consensus 260 ~~~~~~l~~~l~-------~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~---l~~~ 329 (484)
.. ++..+. .+++|+.|++++|.++.-. ...+..++.|++|++++|.++......+... +..+
T Consensus 416 ~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 416 SV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFP----KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp TT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC----THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred Cc----chhhhcccccccccCCCCCEEECcCCccCcCC----HHHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 75 333344 5678999999999887421 1223457899999999999884211111000 1112
Q ss_pred CCcCEEECCCCCCChhHHHHHHHHHH--hCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEec------cCCCCch
Q 011480 330 SVITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR------ANGLRDE 401 (484)
Q Consensus 330 ~~L~~L~ls~n~i~~~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~------~n~i~~~ 401 (484)
++|++|++++|.++. +...+. ..++|++|++++|.++. ++..+..+++|+.|+++ +|.+...
T Consensus 488 ~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 488 YLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp GGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred CCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 399999999999873 223333 56899999999999875 23445668999999995 4555554
Q ss_pred hHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhh
Q 011480 402 GAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 402 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
....+.. .++|++|++++|+++..... +. + .|+.|++++|++.......+..
T Consensus 558 ~p~~l~~-----l~~L~~L~Ls~N~l~~ip~~-~~------~--~L~~L~Ls~N~l~~~~~~~~~~ 609 (636)
T 4eco_A 558 WPEGITL-----CPSLTQLQIGSNDIRKVNEK-IT------P--NISVLDIKDNPNISIDLSYVCP 609 (636)
T ss_dssp CCTTGGG-----CSSCCEEECCSSCCCBCCSC-CC------T--TCCEEECCSCTTCEEECTTTHH
T ss_pred ChHHHhc-----CCCCCEEECCCCcCCccCHh-Hh------C--cCCEEECcCCCCccccHHhcch
Confidence 3333332 27899999999998643221 11 2 5999999999998877655544
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=5e-26 Score=230.93 Aligned_cols=115 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
+..+++|++|++++|.+.... +..+..+++|++|++++|.++..... .+..+++|++|++++|.+...+.
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~-- 115 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGV-- 115 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCS--
T ss_pred hhcCCcccEEECCCCCcCccC----hhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccch--
Confidence 345677888888877776532 23445667788888888777644333 23456678888887777653211
Q ss_pred HHHHHHhCCCcCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEccCCCCC
Q 011480 125 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMID 174 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 174 (484)
...+..+++|++|++++|. ++.... ..+..+++|++|++++|.+.
T Consensus 116 -~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 116 -TSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp -SCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCC
T ss_pred -hhhhhccCCccEEECCCCccccccCH----hhhhcccccCeeeccCCccc
Confidence 1123345677777777765 332111 12334566666666666654
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.5e-26 Score=229.22 Aligned_cols=367 Identities=17% Similarity=0.122 Sum_probs=249.1
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|+++++.+.+.. +..+..+++|++|++++|.+.... -...+..+++|++|++++|.+.... ...
T Consensus 30 ~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN----ETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQLE----TGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEEC----TTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEEC----TTT
T ss_pred CccCEEEecCCccCcCC----hhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCccC----hhh
Confidence 67999999999987642 345677899999999999764110 0123456788999999999887542 233
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHH-HHhcCCCccEEEcCCCCCChHHHH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
+..+++|++|++++|.+++..... ..+..+++|++|++++|.+.... +. .+..+++|+.|++++|.++.....
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ----PASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC----CCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccC----cccccCCCCcccEEeCCCCcccccChh
Confidence 455689999999999988642211 22566789999999999886431 22 266789999999999987654332
Q ss_pred HHHHHhhc--CCCcCEEEccCCCCChhHHHHH----HHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEc
Q 011480 208 ALAKGLEG--NKSLRELHLHGNSIGDEGIRAL----MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 281 (484)
Q Consensus 208 ~l~~~l~~--~~~L~~L~l~~~~l~~~~~~~~----~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 281 (484)
. +.. .+.++.|+++++.+.+.....+ ...+ ...++|++|++++|.+.+.....+... ...++|+.|++
T Consensus 173 ~----l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l 246 (455)
T 3v47_A 173 D----LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLIL 246 (455)
T ss_dssp T----SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEEC
T ss_pred h----hhccccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhcc-ccccceeeEee
Confidence 2 222 3678999999987755221111 1111 122479999999999988754444332 23478999999
Q ss_pred CCCCCCcHHHHH--H----HHHHH--hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH
Q 011480 282 YMNDIGDEGAEK--I----ADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 353 (484)
Q Consensus 282 ~~~~l~~~~~~~--l----~~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~ 353 (484)
++|......... + ...+. ..+.|++|++++|.++.. ....+..+++|++|++++|.+...... .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~ 318 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDN----A 318 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTT----T
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChh----H
Confidence 887443211000 0 00011 136899999999988864 334466779999999999988765332 2
Q ss_pred HHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHH
Q 011480 354 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 433 (484)
Q Consensus 354 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 433 (484)
+..+++|++|++++|.+++.... .+..+++|+.|++++|.+++.+...+... ++|++|++++|+++.....
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTT
T ss_pred hcCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHh
Confidence 34568999999999988765333 34556899999999999887655444332 7899999999988864433
Q ss_pred HHHHHHHhCCccceeEeeccCCcCchhh
Q 011480 434 AIAQALKANEDVAVTSLNLANNFLTKFG 461 (484)
Q Consensus 434 ~l~~~l~~~~~~~L~~l~l~~n~i~~~~ 461 (484)
.+ ...+ +|++|++++|+++...
T Consensus 390 ~~----~~l~--~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 390 IF----DRLT--SLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TT----TTCT--TCCEEECCSSCBCCCT
T ss_pred Hh----ccCC--cccEEEccCCCcccCC
Confidence 22 3334 4999999999887643
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7e-26 Score=228.23 Aligned_cols=358 Identities=17% Similarity=0.140 Sum_probs=226.8
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|++++|.+.... .. .+++|++|++++|.++... +...+..+++|++|++++|.+....
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~lp-----~~--~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~-- 131 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVKIS-----CH--PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKSS-- 131 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCEEE-----CC--CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGGG--
T ss_pred HhhcccCCCEEecCCCceeecC-----cc--ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchhh--
Confidence 4567899999999999998532 22 5799999999999986421 1234567789999999999987632
Q ss_pred HHHHHHHhCCCc--CEEEeeccCC--ChHHHHHHHH----------------------HHhcCCCccEEEccCCCC--Cc
Q 011480 124 CLCDILVDNAGV--ERLQLSSVDL--RDEGAKAIAE----------------------LLKNNSILRVLELNNNMI--DY 175 (484)
Q Consensus 124 ~l~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~----------------------~l~~~~~L~~L~l~~~~l--~~ 175 (484)
+..+++| ++|++++|.+ .......+.. .+..++.|+.|++++|.. ..
T Consensus 132 -----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 132 -----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp -----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred -----ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 2334677 9999999987 2221111111 011234444455544430 00
Q ss_pred hHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH-----------------------h-----hcCCCcCEEEccCC
Q 011480 176 SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG-----------------------L-----EGNKSLRELHLHGN 227 (484)
Q Consensus 176 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-----------------------l-----~~~~~L~~L~l~~~ 227 (484)
..+......+..+++|+.|+++++.++......+... + ..++.|+.++++++
T Consensus 207 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n 286 (520)
T 2z7x_B 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286 (520)
T ss_dssp HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred ceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence 0111112234444555555555444443333332222 1 34445555555555
Q ss_pred CCCh--hHHHHHHHh-----------------hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 228 SIGD--EGIRALMSG-----------------LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 228 ~l~~--~~~~~~~~~-----------------l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
.+.- ..+...... .....++|++|++++|.+.+. ++..+..+++|++|++++|.+++
T Consensus 287 ~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp CCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCB
T ss_pred ceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCc
Confidence 4411 122222111 002445899999999999885 44556789999999999999986
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
- ..++..+..+++|++|++++|.++..... ..+..+++|++|++++|.++......+ .++|+.|++++|
T Consensus 363 l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l------~~~L~~L~Ls~N 431 (520)
T 2z7x_B 363 L--SKIAEMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMSSNILTDTIFRCL------PPRIKVLDLHSN 431 (520)
T ss_dssp H--HHHHHHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECCSSCCCGGGGGSC------CTTCCEEECCSS
T ss_pred c--ccchHHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECcCCCCCcchhhhh------cccCCEEECCCC
Confidence 2 23556677899999999999999863111 135567999999999999976443222 169999999999
Q ss_pred CCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh-hHHHHH-HHHHHhCC
Q 011480 369 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAI-AQALKANE 443 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l-~~~l~~~~ 443 (484)
.++. ++..+..+++|+.|++++|.++......+.. .++|++|++++|+++. .....+ ...+.+.+
T Consensus 432 ~l~~-----ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 498 (520)
T 2z7x_B 432 KIKS-----IPKQVVKLEALQELNVASNQLKSVPDGIFDR-----LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498 (520)
T ss_dssp CCCC-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred cccc-----cchhhhcCCCCCEEECCCCcCCccCHHHhcc-----CCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence 9874 3333446799999999999998644331211 2789999999999875 334555 44444333
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.8e-26 Score=228.69 Aligned_cols=367 Identities=15% Similarity=0.125 Sum_probs=254.5
Q ss_pred EEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhC
Q 011480 53 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 132 (484)
Q Consensus 53 ~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~ 132 (484)
.++.++..++.. +. -.+++++|++++|.++.... ..+..+++|++|++++|.+...- -...+..+
T Consensus 14 ~~~c~~~~l~~l-----p~---l~~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l 78 (455)
T 3v47_A 14 NAICINRGLHQV-----PE---LPAHVNYVDLSLNSIAELNE----TSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGL 78 (455)
T ss_dssp EEECCSSCCSSC-----CC---CCTTCCEEECCSSCCCEECT----TTTSSCTTCCEEECCCCSTTCEE---CTTTTTTC
T ss_pred ccCcCCCCcccC-----CC---CCCccCEEEecCCccCcCCh----hHhccCccccEEECcCCcccceE---Cccccccc
Confidence 456666555432 22 13789999999999875422 33567789999999999764221 01234557
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
++|++|++++|.++... +..+..+++|++|++++|.+...... ...+..+++|++|++++|.++..... ..
T Consensus 79 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~---~~ 149 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLE----TGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPA---SF 149 (455)
T ss_dssp TTCCEEECTTCTTCEEC----TTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCC---GG
T ss_pred ccCCEEeCCCCccCccC----hhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcc---cc
Confidence 99999999999987642 33456679999999999998642111 12377789999999999988653221 12
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHH----HHHHhcCCCCcEEEcCCCCCCc
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV----AEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l----~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
+..+++|++|++++|.+.......+. .+ ....++.|++++|.+.......+ ...+..+++|++|++++|.+++
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~-~l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLL-NF--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSG-GG--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred cCCCCcccEEeCCCCcccccChhhhh-cc--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 67889999999999987654322221 11 11379999999998776321111 1112345789999999999998
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHH----------HHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGAS----------AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG 358 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~----------~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~ 358 (484)
.....+...+ ..++|+.|++++|.+...... .+. -...++|++|++++|.+..... ..+..++
T Consensus 227 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~ 299 (455)
T 3v47_A 227 SMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK--GLEASGVKTCDLSKSKIFALLK----SVFSHFT 299 (455)
T ss_dssp HHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG--GGTTSCCCEEECCSSCCCEECT----TTTTTCT
T ss_pred cchhhhhccc-cccceeeEeeccccccccccchhhhccCcccccc--cccccCceEEEecCccccccch----hhcccCC
Confidence 7666655443 348999999998854432110 000 0123789999999999876533 2335678
Q ss_pred CcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHH
Q 011480 359 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 438 (484)
Q Consensus 359 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 438 (484)
+|++|++++|.+++..... +..+++|+.|++++|.++......+.. .++|++|++++|+++......+..
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~- 369 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFEN-----LDKLEVLDLSYNHIRALGDQSFLG- 369 (455)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTT-----CTTCCEEECCSSCCCEECTTTTTT-
T ss_pred CCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcC-----cccCCEEECCCCcccccChhhccc-
Confidence 9999999999998754333 455699999999999998765444432 278999999999998765544433
Q ss_pred HHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 439 LKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 439 l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
.+ .|++|++++|+++......+...
T Consensus 370 ---l~--~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 370 ---LP--NLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp ---CT--TCCEEECCSSCCSCCCTTTTTTC
T ss_pred ---cc--cccEEECCCCccccCCHhHhccC
Confidence 34 49999999999998777665443
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.8e-26 Score=238.98 Aligned_cols=347 Identities=15% Similarity=0.169 Sum_probs=251.1
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCC-CCH-HHHHHHHH---HhhcCCCCCEEecCCCCCChhH
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITA-AGIKAFDG---VLQSNIALKTLNLSGNPIGDEG 121 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~-~~~~~l~~---~l~~~~~L~~L~L~~~~i~~~~ 121 (484)
.+++|++|+|++|.+... ++..+..+++|+.|++++|+ ++. .....+.. .+..+++|++|++++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence 789999999999987543 34667788999999999998 876 33333333 33456689999999999873
Q ss_pred HHHHHH--HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCC-ccEEEcCC
Q 011480 122 VKCLCD--ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNG 198 (484)
Q Consensus 122 ~~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~-L~~L~l~~ 198 (484)
+.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCS
T ss_pred ---cCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcC
Confidence 333 56677999999999999883 23 4566789999999999986 34555777888 99999999
Q ss_pred CCCChHHHHHHHHHhhcC--CCcCEEEccCCCCChhHHHHHHHhhc-cCCCcceEEEccCCCCChhhHHHHHHH-HhcCC
Q 011480 199 NYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAEY-IKNCK 274 (484)
Q Consensus 199 ~~~~~~~~~~l~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~l~-~~~~~L~~L~l~~~~i~~~~~~~l~~~-l~~~~ 274 (484)
|.++. ++..+... ++|+.|++++|.+.+.. +.+...+. ....+|+.|++++|.+.. ++.. +..++
T Consensus 629 N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~ 697 (876)
T 4ecn_A 629 NKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGS 697 (876)
T ss_dssp SCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTC
T ss_pred CCCCc-----CchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCC
Confidence 98873 22334444 34999999999986531 11110111 112379999999999985 3333 45789
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHh--------CCCccEEEccCCCCChhHHHHHHHHhh--cCCCcCEEECCCCCCCh
Q 011480 275 SLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTIDLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGA 344 (484)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~~l~~--------~~~L~~L~l~~~~l~~~~~~~l~~~l~--~~~~L~~L~ls~n~i~~ 344 (484)
+|+.|++++|.++. ++..+.. +++|++|++++|+++. +...+. .+++|+.|+|++|.+..
T Consensus 698 ~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 698 PISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 99999999998873 2222211 2389999999999984 344454 78999999999999875
Q ss_pred hHHHHHHHHHHhCCCcCEEeccC------CCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCcccc
Q 011480 345 DGAKALSEVLKFHGNINTLKLGW------CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 418 (484)
Q Consensus 345 ~~~~~l~~~~~~~~~L~~L~l~~------~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~ 418 (484)
+...+..+++|+.|++++ |.+... ++..+..+++|+.|++++|.++..... + .++|+
T Consensus 768 -----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~----ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-----l---~~~L~ 830 (876)
T 4ecn_A 768 -----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ----WPTGITTCPSLIQLQIGSNDIRKVDEK-----L---TPQLY 830 (876)
T ss_dssp -----CCCGGGGCTTCCEEECCCCBCTTCCBCCCC----CCTTGGGCSSCCEEECCSSCCCBCCSC-----C---CSSSC
T ss_pred -----cchhhhcCCCCCEEECCCCCCccccccccc----ChHHHhcCCCCCEEECCCCCCCccCHh-----h---cCCCC
Confidence 233445679999999987 555433 334566789999999999999553221 1 26899
Q ss_pred EEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcC
Q 011480 419 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 457 (484)
Q Consensus 419 ~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i 457 (484)
.|+|++|++.......+...+. +..+.+.+|..
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~------~~~~~L~~n~~ 863 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIE------AGMYVLLYDKT 863 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHH------TTCCEEECCTT
T ss_pred EEECCCCCCCccChHHcccccc------chheeecCCCc
Confidence 9999999998877666666654 44455555543
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.2e-27 Score=243.87 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=67.5
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
+..+++|++|++++|.+.... +..+..+++|++|++++|.++.... ..+..+++|++|++++|.+......
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~- 122 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIE----DKAWHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESF- 122 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCCCCT----TSSTTCTTCCEEECTTSCCCCSSSS-
T ss_pred ccCCccCcEEeCCCCcccccC----HHHhhchhhcCEeECCCCcccccCh----hhcCCcccCCEEEccCCcccccccc-
Confidence 345677777777777765432 2334556777777777776653321 2334556677777777765432211
Q ss_pred HHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCc
Q 011480 125 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY 175 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 175 (484)
.+..+++|++|++++|.+.... ++..+..+++|++|++++|.+..
T Consensus 123 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 123 ---PIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp ---CCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCE
T ss_pred ---ccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCccee
Confidence 1334567777777777665311 23345556777777777776653
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.1e-27 Score=244.16 Aligned_cols=345 Identities=13% Similarity=0.147 Sum_probs=230.1
Q ss_pred HHHHhccCCCcceEecccCCCCHH-------------HHHHHHHHhh--cCCCCCEEecCCCCCChhHHHHHHHHHHhCC
Q 011480 69 LAESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNA 133 (484)
Q Consensus 69 l~~~l~~~~~L~~L~l~~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~ 133 (484)
++..+..+++|++|++++|.++.. ....+...+. .+++|++|++++|.+... +...+..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCC
Confidence 345567788999999999988752 1112444555 778899999998876543 334455678
Q ss_pred CcCEEEeeccC-CCh-HHHHHHHHH--HhcCCCccEEEccCCCCCchHHHHHHH--HHhcCCCccEEEcCCCCCChHHHH
Q 011480 134 GVERLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 134 ~L~~L~l~~~~-~~~-~~~~~l~~~--l~~~~~L~~L~l~~~~l~~~~~~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
+|++|++++|. +++ ..+..+... +..+++|++|++++|.+. .++. .+..+++|+.|++++|.++..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~--- 345 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGK--- 345 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEE---
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccc---
Confidence 89999999998 876 434334332 223478999999999885 2444 677888999999999887621
Q ss_pred HHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCc-ceEEEccCCCCChhhHHHHHHHHhcC--CCCcEEEcCCC
Q 011480 208 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC--KSLLWINLYMN 284 (484)
Q Consensus 208 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~-L~~L~l~~~~i~~~~~~~l~~~l~~~--~~L~~L~l~~~ 284 (484)
++ .+..+++|++|++++|.+.. +...+.. ..+ |++|++++|.+.. ++..+... ++|+.|++++|
T Consensus 346 -ip-~~~~l~~L~~L~L~~N~l~~-----lp~~l~~-l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 346 -LP-AFGSEIKLASLNLAYNQITE-----IPANFCG-FTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -CC-CCEEEEEESEEECCSSEEEE-----CCTTSEE-ECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred -hh-hhCCCCCCCEEECCCCcccc-----ccHhhhh-hcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCC
Confidence 22 46677889999999987652 1122222 235 9999999998884 44444443 37999999999
Q ss_pred CCCcHHHHHHHHHHH-------hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH---H
Q 011480 285 DIGDEGAEKIADALK-------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV---L 354 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~-------~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~---~ 354 (484)
.++.. ++..+. .+++|++|++++|.++.... ..+..+++|++|++++|.++......+... +
T Consensus 413 ~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 413 EIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp CTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred cCCCc----chhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 88764 222233 45689999999999885321 223446899999999998873211111000 0
Q ss_pred HhCCCcCEEeccCCCCChhHHHHHHHHHH--cCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcC------CCC
Q 011480 355 KFHGNINTLKLGWCQIGASGAEFVADMLR--YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA------FNE 426 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~------~n~ 426 (484)
+.+++|++|++++|.++. ++..+. .+++|+.|++++|.++.. ...+.. .++|+.|+++ +|+
T Consensus 485 ~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~-----l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLN-----SSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp TTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGG-----CSSCCEEECCSCBCTTCCB
T ss_pred cccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCCc-Chhhhc-----CCCCCEEECCCCcccccCc
Confidence 112389999999999874 233343 678999999999998862 222222 2789999995 455
Q ss_pred CChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhh
Q 011480 427 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 463 (484)
Q Consensus 427 i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~ 463 (484)
+.......+ ..++ .|+.|++++|+++.....
T Consensus 554 l~~~~p~~l----~~l~--~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 554 TLREWPEGI----TLCP--SLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp CCCCCCTTG----GGCS--SCCEEECCSSCCCBCCSC
T ss_pred ccccChHHH----hcCC--CCCEEECCCCcCCccCHh
Confidence 554333333 3445 499999999999765543
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.3e-24 Score=218.74 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=72.5
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCC-CChhHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGV 122 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-i~~~~~ 122 (484)
.+..+++|++|++++|.+.... ...+..+++|++|++++|.++..+. ...+..+++|++|++++|. ++....
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLS----SSWFGPLSSLKYLNLMGNPYQTLGV---TSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCC----HHHHTTCTTCCEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred hccccccCCEEECCCCccCccC----HHHhccCCCCcEEECCCCcccccch---hhhhhccCCccEEECCCCccccccCH
Confidence 3466888999999999987654 3345677899999999998763211 1234566788999998876 433211
Q ss_pred HHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCC
Q 011480 123 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI 173 (484)
Q Consensus 123 ~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l 173 (484)
..+..+++|++|++++|.++.... ..+..+++|++|+++++.+
T Consensus 142 ----~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 142 ----IDFAGLTSLNELEIKALSLRNYQS----QSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp ----TTTTTCCEEEEEEEEETTCCEECT----TTTTTCSEEEEEEEECSBS
T ss_pred ----hhhhcccccCeeeccCCcccccCh----hhhhccccCceEecccCcc
Confidence 123445778888888887765322 2223334455555555444
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=6.3e-26 Score=230.50 Aligned_cols=357 Identities=16% Similarity=0.137 Sum_probs=204.8
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|++++|.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+..-. ..
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRLQNIS-----CC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEECT----TTTTTCTTCCEEECTTSCCCEEC-----SC
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCCH----HHhCCCCCCCEEECCCCcCCccC-----cc
Confidence 56777777777766432 2344566777777777777654322 22345566777777777665321 11
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCc--cEEEcCCCCC-----
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG----- 201 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~----- 201 (484)
.+++|++|++++|.++... ++..+..+++|++|++++|.+.... +..++.| +.|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 3567777777777665421 1123445567777777777665422 1222233 5555555443
Q ss_pred -----------------------------------------------ChHHHHHHHHHhhcCCCcCEEEccCCCCChhHH
Q 011480 202 -----------------------------------------------GALGANALAKGLEGNKSLRELHLHGNSIGDEGI 234 (484)
Q Consensus 202 -----------------------------------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 234 (484)
...........+...+.|+.+++..+.+.+..+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 111222333445566666666666666665555
Q ss_pred HHHHHhhccCCCcceEEEccCCCCChhhH----------------------------HHHHHHH----------------
Q 011480 235 RALMSGLSSRKGKLAVLDIGNNSISAKGA----------------------------FHVAEYI---------------- 270 (484)
Q Consensus 235 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~----------------------------~~l~~~l---------------- 270 (484)
..+...... .+|++|++++|.+.+... ..+...+
T Consensus 267 ~~~~~~~~~--~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 267 VKLFQFFWP--RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHTT--SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHhhhc--ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 554444322 256777766665442100 1111111
Q ss_pred -----hcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh
Q 011480 271 -----KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345 (484)
Q Consensus 271 -----~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~ 345 (484)
..+++|++|++++|.+++. ++..+..+++|++|++++|+++.. ..++..+..+++|++|++++|.++..
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc
Confidence 4567788888888877763 233345667888888888887752 22445566778888888888876542
Q ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCC
Q 011480 346 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 425 (484)
Q Consensus 346 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n 425 (484)
.... .+...++|++|++++|.+++.....+ .++|+.|++++|.++..... + . ..++|+.|++++|
T Consensus 419 ~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l------~~~L~~L~L~~N~l~~ip~~-~----~-~l~~L~~L~L~~N 483 (562)
T 3a79_B 419 AYDR---TCAWAESILVLNLSSNMLTGSVFRCL------PPKVKVLDLHNNRIMSIPKD-V----T-HLQALQELNVASN 483 (562)
T ss_dssp CSSC---CCCCCTTCCEEECCSSCCCGGGGSSC------CTTCSEEECCSSCCCCCCTT-T----T-SSCCCSEEECCSS
T ss_pred cChh---hhcCcccCCEEECCCCCCCcchhhhh------cCcCCEEECCCCcCcccChh-h----c-CCCCCCEEECCCC
Confidence 1110 12234688888888888765322111 15788888888887743211 1 1 1267888888888
Q ss_pred CCChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 426 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 426 ~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
+++...... +...+ .|+.|++++|.+.-
T Consensus 484 ~l~~l~~~~----~~~l~--~L~~L~l~~N~~~c 511 (562)
T 3a79_B 484 QLKSVPDGV----FDRLT--SLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCCCCTTS----TTTCT--TCCCEECCSCCBCC
T ss_pred CCCCCCHHH----HhcCC--CCCEEEecCCCcCC
Confidence 887433221 23334 48888888887664
No 31
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=4.1e-22 Score=190.11 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=153.4
Q ss_pred CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHH
Q 011480 217 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 296 (484)
Q Consensus 217 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 296 (484)
+.|+.|++++|.++..+...+...+......|++|++++|.+++.+...+...+. +|+.|++++|.+++.+...++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 5677777777777777776666666655457777777777777766655554443 5778888888888877777777
Q ss_pred HHH-hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHH
Q 011480 297 ALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 375 (484)
Q Consensus 297 ~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 375 (484)
.+. .+++|++|++++|.+++.++..++.++..+++|++|+|++|.+++.++..++..+..+++|+.|++++|.+++.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 774 3677888888888888888888888888888888888888888888888888888777888888888888888888
Q ss_pred HHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEE--cCCCCCChh
Q 011480 376 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID--LAFNEIRDD 430 (484)
Q Consensus 376 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~--l~~n~i~~~ 430 (484)
..+..++..+++|+.|+|++|.|++.|+..+..........|+.+. +..+.+++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 8888888888888888888888888888877764331111277777 677766554
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=8.4e-27 Score=242.74 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHH
Q 011480 357 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA 436 (484)
Q Consensus 357 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 436 (484)
+++|++|++++|.++..... .+..+++|+.|++++|.++......+.. .++|+.|++++|+++......+.
T Consensus 535 l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVE----VFKDLFELKIIDLGLNNLNTLPASVFNN-----QVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCCCCEEECCCCCCCCCCHH----HcccccCcceeECCCCCCCcCCHhHhCC-----CCCCCEEECCCCcCCccChhHhc
Confidence 34555555555554432111 2233455555555555555432221111 14555666666655554444333
Q ss_pred HHHHhCCccceeEeeccCCcC
Q 011480 437 QALKANEDVAVTSLNLANNFL 457 (484)
Q Consensus 437 ~~l~~~~~~~L~~l~l~~n~i 457 (484)
..+ ..|+.+++++|.+
T Consensus 606 ~~~-----~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 606 PAF-----RNLTELDMRFNPF 621 (680)
T ss_dssp HHH-----TTCSEEECTTCCC
T ss_pred ccc-----cccCEEEccCCCc
Confidence 111 1355666665543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=6.7e-25 Score=212.65 Aligned_cols=316 Identities=16% Similarity=0.107 Sum_probs=201.9
Q ss_pred cccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHH
Q 011480 48 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 127 (484)
Q Consensus 48 ~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~ 127 (484)
+++++.++++++.++..... .+..+++|++|++++|.++..... .+..+++|++|++++|.+..... .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPP----H 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCT----T
T ss_pred cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCH----H
Confidence 57788888888877654322 234458888888888877643222 23456778888888887765322 2
Q ss_pred HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHH
Q 011480 128 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 128 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
.+..+++|++|++++|.++.... ..+..+++|++|++++|.+.... +..+..+++|+.|++++|.++...
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred HhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc--
Confidence 23446788888888887764211 22345678888888888775321 234556778888888888776532
Q ss_pred HHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCC
Q 011480 208 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 287 (484)
Q Consensus 208 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 287 (484)
+..+++|+.|++++|.+... .....+++|++++|.+..... ...++|+.|++++|.++
T Consensus 182 -----~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 182 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVVRG-------PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEEEC-------CCCSSCCEEECCSSCCC
T ss_pred -----cccccccceeeccccccccc----------CCCCcceEEECCCCeeeeccc-------cccccccEEECCCCCCc
Confidence 34567888888888776542 122368888888887766311 22457888888888777
Q ss_pred cHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccC
Q 011480 288 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 367 (484)
Q Consensus 288 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~ 367 (484)
+. ..+..+++|++|++++|.++... ...+..+++|++|++++|.++.... .....++|++|++++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCC
Confidence 63 23556777888888888777642 2345556788888888877665311 112356777777777
Q ss_pred CCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHH
Q 011480 368 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 435 (484)
Q Consensus 368 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 435 (484)
|.++..... + ..+++|+.|++++|.+++.... ..++|+.|++++|+++......+
T Consensus 305 n~l~~~~~~-~----~~l~~L~~L~L~~N~i~~~~~~--------~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 305 NHLLHVERN-Q----PQFDRLENLYLDHNSIVTLKLS--------THHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SCCCCCGGG-H----HHHTTCSEEECCSSCCCCCCCC--------TTCCCSEEECCSSCEEHHHHHHH
T ss_pred CcceecCcc-c----cccCcCCEEECCCCccceeCch--------hhccCCEEEcCCCCccchhHHHH
Confidence 776643211 2 2237777777777777664311 12567777777777776554444
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.9e-26 Score=235.45 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|++++|.+.... +..+..+++|++|++++|.++..... .+..+++|++|++++|.+....
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~-- 144 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCK-- 144 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSSCCCCCC--
T ss_pred HhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCCccccee--
Confidence 3567889999999999887642 34567789999999999987543211 2456778999999998876421
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHH
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGA 150 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~ 150 (484)
+...+..+++|++|++++|.++....
T Consensus 145 -lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 145 -LPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp -CCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred -chHhHhhcCCCCEEEccCCcceecCh
Confidence 23345567899999999998776433
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=4.8e-25 Score=213.66 Aligned_cols=318 Identities=19% Similarity=0.162 Sum_probs=241.2
Q ss_pred CCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHH
Q 011480 76 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 155 (484)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 155 (484)
.++++.|+++++.++...... +..+++|++|++++|.+...... .+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~----~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHH----HHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCChhH----hcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCC----HH
Confidence 478999999999876544332 34567899999999988754322 3445699999999999988642 23
Q ss_pred HHhcCCCccEEEccCCCCCchHHHHHHH-HHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHH
Q 011480 156 LLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 234 (484)
Q Consensus 156 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 234 (484)
.+..+++|++|++++|.+.. ++. .+..+++|++|++++|.++.... ..+..+++|++|++++|.+....+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG
T ss_pred HhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc
Confidence 35567999999999999863 222 34678999999999998875332 346788999999999999876432
Q ss_pred HHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCC
Q 011480 235 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 314 (484)
Q Consensus 235 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l 314 (484)
...++|++|++++|.+... ...+.|+.|++++|.++... ....++|++|++++|.+
T Consensus 183 --------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 183 --------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-------GPVNVELTILKLQHNNL 238 (390)
T ss_dssp --------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEEE-------CCCCSSCCEEECCSSCC
T ss_pred --------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeecc-------ccccccccEEECCCCCC
Confidence 1234899999999988862 34568999999999887631 12257999999999999
Q ss_pred ChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEec
Q 011480 315 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 394 (484)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~ 394 (484)
++. ..+..+++|++|++++|.+...... .+...++|++|++++|.++... ..+..+++|+.|+++
T Consensus 239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 239 TDT------AWLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLS 303 (390)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECC
T ss_pred ccc------HHHcCCCCccEEECCCCcCCCcChh----HccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECC
Confidence 874 3577789999999999998865332 3345689999999999987632 223456899999999
Q ss_pred cCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhhhhh
Q 011480 395 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 468 (484)
Q Consensus 395 ~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 468 (484)
+|.++..... +... ++|+.|++++|+|+... +...+ .|+.|++++|+++.....++...
T Consensus 304 ~n~l~~~~~~-~~~l-----~~L~~L~L~~N~i~~~~-------~~~~~--~L~~L~l~~N~~~~~~~~~~~~~ 362 (390)
T 3o6n_A 304 HNHLLHVERN-QPQF-----DRLENLYLDHNSIVTLK-------LSTHH--TLKNLTLSHNDWDCNSLRALFRN 362 (390)
T ss_dssp SSCCCCCGGG-HHHH-----TTCSEEECCSSCCCCCC-------CCTTC--CCSEEECCSSCEEHHHHHHHTTT
T ss_pred CCcceecCcc-cccc-----CcCCEEECCCCccceeC-------chhhc--cCCEEEcCCCCccchhHHHHHHH
Confidence 9999864322 3222 78999999999998763 33344 49999999999998777766543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.6e-26 Score=235.52 Aligned_cols=140 Identities=19% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
+..+++|++|+++++.+..... ..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.....
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~-- 114 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKN-- 114 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCT----THHHHCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCS--
T ss_pred HhCCCcCcEEECCCCccCccCH----HHHhcccCcCEEECCCCccCccCh----hhhccCCCCCEEECCCCccCccCh--
Confidence 3445666677776666654322 223344666666666666543211 123445566666666665543211
Q ss_pred HHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCC
Q 011480 125 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 202 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 202 (484)
..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.......+ ....+++|+.|++++|.++
T Consensus 115 --~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 115 --NPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQELLLSNNKIQALKSEEL--DIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp --CTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCCEEECCSSCCCCBCHHHH--GGGTTCEESEEECTTCCCC
T ss_pred --hHccccCCCCEEECCCCcccccCc----hhhcccccCCEEEccCCcccccCHHHh--hccccccccEEECCCCccc
Confidence 122344666666666666554211 122345566666666666543221111 0123355666666665544
No 37
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.88 E-value=4.6e-21 Score=182.90 Aligned_cols=210 Identities=19% Similarity=0.292 Sum_probs=151.5
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcC-CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 267 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 267 (484)
+.|+.|++++|.++......+...+... ++|++|++++|.+++.++..+...+. ++++|++++|.+++.+...+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL----RARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH----TEEEEECCSSCCCHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH----hccHhhcCCCCCCHHHHHHHH
Confidence 4566666666666666666666666543 57777777777777777666666555 578888888888877777777
Q ss_pred HHHh-cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhH
Q 011480 268 EYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 346 (484)
Q Consensus 268 ~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~ 346 (484)
..+. .+++|++|++++|.+++.+...++..+..+++|++|+|++|.+++.++..++..+..+++|++|+|++|.+++.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 7774 467788888888888888888888777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcC-CCccEEE--eccCCCCchh
Q 011480 347 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN-NTISILD--LRANGLRDEG 402 (484)
Q Consensus 347 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~-~~L~~L~--l~~n~i~~~~ 402 (484)
...+...+..+++|++|++++|.+++.+...+..+.... ..|+.+. +.++.+++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~ 286 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHH
Confidence 888888877788888888888888888777776654322 1267776 6666666553
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-23 Score=215.15 Aligned_cols=316 Identities=16% Similarity=0.099 Sum_probs=221.6
Q ss_pred cccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHH
Q 011480 48 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 127 (484)
Q Consensus 48 ~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~ 127 (484)
+++++.++++++.++..... .+..+++|+.|++++|.++..... .+..+++|++|+|++|.+..... .
T Consensus 50 l~~l~~l~l~~~~l~~lp~~----~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPP----H 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTH----HHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCT----T
T ss_pred CCCceEEEeeCCCCCCcCHH----HHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCH----H
Confidence 57788899988887665422 334568899999999987653322 34566789999999888765422 2
Q ss_pred HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHH
Q 011480 128 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 128 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
.+..+++|++|++++|.++... ...+..+++|++|++++|.+... .+..+..+++|+.|++++|.++...
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 3345688999999999887532 12245678899999999988642 2345667889999999998877542
Q ss_pred HHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCC
Q 011480 208 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 287 (484)
Q Consensus 208 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 287 (484)
+..+++|+.|++++|.+... .....|++|++++|.+..... ...++|+.|++++|.++
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~~~-------~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVVRG-------PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEEEC-------SCCSCCCEEECCSSCCC
T ss_pred -----hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCccccccc-------ccCCCCCEEECCCCCCC
Confidence 45678899999998887652 122378899999988776311 12357899999998887
Q ss_pred cHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccC
Q 011480 288 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 367 (484)
Q Consensus 288 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~ 367 (484)
+. ..+..+++|++|++++|.++... ...+..+++|+.|+|++|.++... .....+++|+.|++++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCC
Confidence 63 34567788999999999887652 334566788999999998876531 1123457899999999
Q ss_pred CCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHH
Q 011480 368 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 435 (484)
Q Consensus 368 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 435 (484)
|.++.... .+..+++|+.|++++|.++...+. ..++|+.|++++|+++......+
T Consensus 311 N~l~~i~~-----~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 311 NHLLHVER-----NQPQFDRLENLYLDHNSIVTLKLS--------THHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp SCCCCCGG-----GHHHHTTCSEEECCSSCCCCCCCC--------TTCCCSEEECCSSCEEHHHHHHH
T ss_pred CCCCccCc-----ccccCCCCCEEECCCCCCCCcChh--------hcCCCCEEEeeCCCCCChhHHHH
Confidence 88874321 223348899999999988765311 12678899999998876654443
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=9.6e-26 Score=229.96 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
+..+++|++|++++|.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+......
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~- 118 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENF- 118 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTSCCCCSTTC-
T ss_pred hhCCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccCH----hhhcCccccccccccccccccCCCc-
Confidence 345677788888777776532 2344566778888887777654322 2334566777777777766542211
Q ss_pred HHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCc
Q 011480 125 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY 175 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 175 (484)
.+..+++|++|++++|.+.... ++..+..+++|++|++++|.+..
T Consensus 119 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 119 ---PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ---SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCE
T ss_pred ---cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccce
Confidence 1344577777777777765421 22335556777777777777654
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1e-23 Score=214.20 Aligned_cols=347 Identities=16% Similarity=0.109 Sum_probs=227.0
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|++++|.+.... +..+..+++|++|++++|+++..... .+++|++|++++|.+....
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~Ls~N~l~~l~-- 137 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNISCC-------PMASLRHLDLSFNDFDVLP-- 137 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEECSC-------CCTTCSEEECCSSCCSBCC--
T ss_pred hhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCccCcc-------ccccCCEEECCCCCccccC--
Confidence 3466888999999999887643 34456678999999999987642211 4678999999998876522
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCc--cEEEccCCCC----------------------------
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI---------------------------- 173 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L--~~L~l~~~~l---------------------------- 173 (484)
++..+..+++|++|++++|.++...+ ..++.| ++|++++|.+
T Consensus 138 -~p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 138 -VCKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp -CCGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred -chHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 11234556888899998888775322 122333 6666666655
Q ss_pred ------------------------CchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCC
Q 011480 174 ------------------------DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 229 (484)
Q Consensus 174 ------------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l 229 (484)
.-..+......+...+.++.+.+..+.++......++..+. .++|++|++++|.+
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l 288 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEE
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEe
Confidence 11122333344555666666666666665555444444332 23566666655543
Q ss_pred Ch-------------------------------hHHHHHHHh-----------------hccCCCcceEEEccCCCCChh
Q 011480 230 GD-------------------------------EGIRALMSG-----------------LSSRKGKLAVLDIGNNSISAK 261 (484)
Q Consensus 230 ~~-------------------------------~~~~~~~~~-----------------l~~~~~~L~~L~l~~~~i~~~ 261 (484)
.+ ..+..+... +....++|++|++++|.+.+.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence 31 111111000 002345899999999999874
Q ss_pred hHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCC
Q 011480 262 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 341 (484)
Q Consensus 262 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~ 341 (484)
++..+..+++|+.|++++|.++.- ..++..+..+++|++|++++|.++.... ...+..+++|++|++++|.
T Consensus 369 ----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 369 ----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp ----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCCCCTTCCEEECCSSC
T ss_pred ----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccC---hhhhcCcccCCEEECCCCC
Confidence 445567899999999999999862 1244456778999999999999876211 1135567999999999999
Q ss_pred CChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEE
Q 011480 342 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 421 (484)
Q Consensus 342 i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~ 421 (484)
+++.....+ .++|+.|++++|.++.. +..+..+++|+.|++++|.++......+ .. .++|+.|+
T Consensus 440 l~~~~~~~l------~~~L~~L~L~~N~l~~i-----p~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~-l~~L~~L~ 503 (562)
T 3a79_B 440 LTGSVFRCL------PPKVKVLDLHNNRIMSI-----PKDVTHLQALQELNVASNQLKSVPDGVF----DR-LTSLQYIW 503 (562)
T ss_dssp CCGGGGSSC------CTTCSEEECCSSCCCCC-----CTTTTSSCCCSEEECCSSCCCCCCTTST----TT-CTTCCCEE
T ss_pred CCcchhhhh------cCcCCEEECCCCcCccc-----ChhhcCCCCCCEEECCCCCCCCCCHHHH----hc-CCCCCEEE
Confidence 976432211 16999999999998742 3333467999999999999986433212 21 27899999
Q ss_pred cCCCCCCh-hHHHHHHH
Q 011480 422 LAFNEIRD-DGAFAIAQ 437 (484)
Q Consensus 422 l~~n~i~~-~~~~~l~~ 437 (484)
+++|++.. -....+..
T Consensus 504 l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 504 LHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp CCSCCBCCCHHHHHHHH
T ss_pred ecCCCcCCCcchHHHHH
Confidence 99999864 33444433
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=7.6e-25 Score=232.60 Aligned_cols=311 Identities=16% Similarity=0.120 Sum_probs=174.3
Q ss_pred HHcccceEEeCCCCCCChhHHHHH-HHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 46 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 46 ~~~~~l~~L~ls~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
..+++|++|++++|..... + +..+..+++|++|++++|.++... ...+..+++|++|++++|.+.......
T Consensus 45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEEC----TTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCcccC----HhHccCCcccCEeeCcCCCCCcccccC
Confidence 4566677777776633211 1 234456677777777777665332 223445667777777777665321110
Q ss_pred HHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChH
Q 011480 125 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 204 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 204 (484)
..+..+++|++|++++|.+.... .+..+..+++|++|++++|.+.......+... . .++|+.|+++.|.+...
T Consensus 117 --~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 117 --GYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp --CCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCCC
T ss_pred --ccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCccccc
Confidence 11334567777777777665421 11234556777777777776643221111111 0 14566666666554431
Q ss_pred HHHHHHHHhhcCC------CcCEEEccCCCCChhHHHHHHHhhc--------------------------------c-CC
Q 011480 205 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS--------------------------------S-RK 245 (484)
Q Consensus 205 ~~~~l~~~l~~~~------~L~~L~l~~~~l~~~~~~~~~~~l~--------------------------------~-~~ 245 (484)
.. ..+..++ .|+.|++++|.+.......+...+. . ..
T Consensus 190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 11 1111222 3777777777654432222221110 0 01
Q ss_pred CcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHH
Q 011480 246 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 246 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
+++++|++++|.+... .+..+..+++|+.|++++|.++.. ....+..+++|++|++++|.++... ...
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELY----SSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCC----SCS
T ss_pred CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccC----HHH
Confidence 3678888888877653 233456677888888888877653 1223456678888888888776531 234
Q ss_pred hhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 326 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
+..+++|++|++++|.+...... .+..+++|++|++++|.++... ..++|+.|++++|+++.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~---------~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSS----CSCSCCCCCEEEEETCCSCCCS---------SCCSCSEEEEESCCCCC
T ss_pred hcCCCCCCEEECCCCCCCccChh----hhcCCCCCCEEECCCCCCCccc---------CCCCcchhccCCCCccc
Confidence 55668888888888876543321 2234578888888888776421 14667777777666653
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.4e-25 Score=227.06 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=104.2
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
++++.|+++++.+.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+..... ..
T Consensus 28 ~~l~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLAL----GA 95 (570)
T ss_dssp SSCCEEECCSCCCCEEC----TTTTTTCSSCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECT----TT
T ss_pred ccccEEEccCCccCccC----hhHhhCCCCceEEECCCCcCCccCc----ccccCchhCCEEeCcCCcCCccCH----hh
Confidence 46999999999987653 2345678999999999998875332 235567899999999998875432 23
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 204 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 204 (484)
+..+++|++|++++|.+...... .+..+++|++|++++|.+..- .++..+..+++|++|++++|.++..
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTC----SCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred hcCccccccccccccccccCCCc----cccccccccEEecCCCcccee---cChhhhcccCCCCEEeCcCCcccee
Confidence 45579999999999988763221 255678999999999988631 1345677899999999999988654
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=5.4e-25 Score=219.22 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=49.5
Q ss_pred CccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHH
Q 011480 303 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML 382 (484)
Q Consensus 303 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l 382 (484)
+|++|++++|.++.... ..+..+++|++|++++|.++..... .+..+++|+.|++++|.+++.... .+
T Consensus 225 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~----~~ 292 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLAVVEPY----AF 292 (477)
T ss_dssp CCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEECTT----SCTTCTTCCEEECCSSCCSEECTT----TB
T ss_pred cccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccChh----hccccccCCEEECCCCccceECHH----Hh
Confidence 55555555555543221 1233345555555555554432211 122345555555555555443222 22
Q ss_pred HcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 383 RYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 383 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
..+++|+.|++++|.++......+... ++|+.|++++|++.
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSV-----GNLETLILDSNPLA 333 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCG-----GGCCEEECCSSCEE
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCC-----cccCEEEccCCCcc
Confidence 334555555555555554322211111 44555666555543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=5.5e-25 Score=219.15 Aligned_cols=302 Identities=16% Similarity=0.103 Sum_probs=193.5
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 185 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 185 (484)
++++|++++|.+..... ..+..+++|++|++++|.++.... ..+..+++|++|++++|.+..-. ...+
T Consensus 33 ~l~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 100 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLGLRSNRLKLIP----LGVF 100 (477)
T ss_dssp TCSEEECCSSCCCEECT----TTTTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCSCC----TTSS
T ss_pred CCcEEECCCCccceECH----hHccCCCCCCEEECCCCccCEeCh----hhhhCCccCCEEECCCCcCCccC----cccc
Confidence 45555555555543211 122334566666666665554321 22334466666666666654211 1223
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHH
Q 011480 186 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 265 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 265 (484)
..+++|+.|++++|.++... +..+..+++|++|++++|.+.......+ ....+|++|++++|.+...
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~---- 167 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILL----DYMFQDLYNLKSLEVGDNDLVYISHRAF-----SGLNSLEQLTLEKCNLTSI---- 167 (477)
T ss_dssp TTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEEECCTTCCEECTTSS-----TTCTTCCEEEEESCCCSSC----
T ss_pred cCCCCCCEEECCCCccccCC----hhHccccccCCEEECCCCccceeChhhc-----cCCCCCCEEECCCCcCccc----
Confidence 45566777777766655322 1335567778888888777654321111 2234788888888877764
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh
Q 011480 266 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345 (484)
Q Consensus 266 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~ 345 (484)
....+..+++|+.|++++|.+.... ...+..+++|++|++++|...... ........+|++|++++|.++..
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIR----DYSFKRLYRLKVLEISHWPYLDTM----TPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEEC----TTCSCSCTTCCEEEEECCTTCCEE----CTTTTTTCCCSEEEEESSCCCSC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeC----hhhcccCcccceeeCCCCcccccc----CcccccCccccEEECcCCccccc
Confidence 2345678888999999888876531 123456789999999998755432 12223346999999999998865
Q ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCC
Q 011480 346 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 425 (484)
Q Consensus 346 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n 425 (484)
... .+..+++|+.|++++|.++..... .+..+++|+.|++++|.++......+... ++|+.|++++|
T Consensus 240 ~~~----~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N 306 (477)
T 2id5_A 240 PYL----AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLAVVEPYAFRGL-----NYLRVLNVSGN 306 (477)
T ss_dssp CHH----HHTTCTTCCEEECCSSCCCEECTT----SCTTCTTCCEEECCSSCCSEECTTTBTTC-----TTCCEEECCSS
T ss_pred CHH----HhcCccccCeeECCCCcCCccChh----hccccccCCEEECCCCccceECHHHhcCc-----ccCCEEECCCC
Confidence 432 345678999999999998865443 34556999999999999988655443322 78999999999
Q ss_pred CCChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 426 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 426 ~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
+++......+. .++ +|+.|++++|.+.-
T Consensus 307 ~l~~~~~~~~~----~l~--~L~~L~l~~N~l~c 334 (477)
T 2id5_A 307 QLTTLEESVFH----SVG--NLETLILDSNPLAC 334 (477)
T ss_dssp CCSCCCGGGBS----CGG--GCCEEECCSSCEEC
T ss_pred cCceeCHhHcC----CCc--ccCEEEccCCCccC
Confidence 99865443332 233 49999999998763
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-23 Score=214.76 Aligned_cols=316 Identities=18% Similarity=0.157 Sum_probs=238.1
Q ss_pred CCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHH
Q 011480 76 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 155 (484)
Q Consensus 76 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 155 (484)
..+++.++++++.++...... +..+++|++|++++|.+...... .+..+++|++|++++|.++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTHH----HHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcCHHH----HccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCC----HH
Confidence 478999999999876543332 34567899999999988764322 3445799999999999988743 23
Q ss_pred HHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHH
Q 011480 156 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 235 (484)
Q Consensus 156 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 235 (484)
.+..+++|++|++++|.+..- ....+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+....+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~- 188 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSL----PRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 188 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred HHcCCCCCCEEEeeCCCCCCC----CHHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcCh-
Confidence 345679999999999998632 12235678999999999998875332 346788999999999999876431
Q ss_pred HHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCC
Q 011480 236 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 315 (484)
Q Consensus 236 ~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 315 (484)
...+.|+.|++++|.+... ...+.|+.|++++|.++... . ...++|+.|++++|.++
T Consensus 189 -------~~l~~L~~L~l~~n~l~~l---------~~~~~L~~L~ls~n~l~~~~-----~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 189 -------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -------GGCTTCSEEECCSSCCSEE---------ECCTTCSEEECCSSCCCEEE-----C--SCCSCCCEEECCSSCCC
T ss_pred -------hhhhhhhhhhcccCccccc---------cCCchhheeeccCCcccccc-----c--ccCCCCCEEECCCCCCC
Confidence 1234899999999988862 34568999999999887531 1 12468999999999998
Q ss_pred hhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEecc
Q 011480 316 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 395 (484)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~ 395 (484)
+. ..+..+++|++|++++|.++..... .+..+++|+.|++++|.+++.. ..+..+++|+.|++++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCCHH----HhcCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCC
Confidence 73 4577789999999999998865432 3345789999999999987632 2234568999999999
Q ss_pred CCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchhhhhhh
Q 011480 396 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 465 (484)
Q Consensus 396 n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l 465 (484)
|.++.... .+... ++|+.|++++|.++... +..++ .|+.|++++|.+.......+
T Consensus 311 N~l~~i~~-~~~~l-----~~L~~L~L~~N~l~~~~-------~~~~~--~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 311 NHLLHVER-NQPQF-----DRLENLYLDHNSIVTLK-------LSTHH--TLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp SCCCCCGG-GHHHH-----TTCSEEECCSSCCCCCC-------CCTTC--CCSEEECCSSCEEHHHHHHH
T ss_pred CCCCccCc-ccccC-----CCCCEEECCCCCCCCcC-------hhhcC--CCCEEEeeCCCCCChhHHHH
Confidence 99985432 23222 78999999999998653 23344 49999999999887655444
No 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.9e-21 Score=181.05 Aligned_cols=217 Identities=14% Similarity=0.154 Sum_probs=121.2
Q ss_pred cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHH
Q 011480 215 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 293 (484)
Q Consensus 215 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~ 293 (484)
.+++|++|++++|.+.+.++...... .++|++|++++|.+++. .+..+..+++|++|++++| .+++.++.
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~----~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~- 161 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQ----CSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQ- 161 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTT----BCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHH-
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhh----CCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHH-
Confidence 44556666666665554444433322 22566666666665554 3344555666666666666 56554332
Q ss_pred HHHHHHhCCCccEEEccCC-CCChhHHHHHHHHhhcCC-CcCEEECCCC--CCChhHHHHHHHHHHhCCCcCEEeccCCC
Q 011480 294 IADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNS-VITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQ 369 (484)
Q Consensus 294 l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~-~L~~L~ls~n--~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 369 (484)
..+..+++|++|++++| .+++.++.. .+..++ +|++|++++| .+++..+.. .+..+++|++|++++|.
T Consensus 162 --~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 162 --TLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp --HHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTTCT
T ss_pred --HHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHH---HHhhCCCCCEEeCCCCC
Confidence 23444566666666666 666544322 233456 6677777666 455443332 23345667777777766
Q ss_pred -CChhHHHHHHHHHHcCCCccEEEeccC-CCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccce
Q 011480 370 -IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAV 447 (484)
Q Consensus 370 -i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L 447 (484)
+++..... +..+++|+.|++++| .+++.++..+.. .++|+.|++++| +++.++..+... +
T Consensus 234 ~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~-i~~~~~~~l~~~--------l 295 (336)
T 2ast_B 234 MLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLELGE-----IPTLKTLQVFGI-VPDGTLQLLKEA--------L 295 (336)
T ss_dssp TCCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGGGGGG-----CTTCCEEECTTS-SCTTCHHHHHHH--------S
T ss_pred cCCHHHHHH----HhCCCCCCEeeCCCCCCCCHHHHHHHhc-----CCCCCEEeccCc-cCHHHHHHHHhh--------C
Confidence 55544332 334467777777776 566655433322 256777777777 666666666543 5
Q ss_pred eEeeccCCcCchhhhhhhh
Q 011480 448 TSLNLANNFLTKFGQSALT 466 (484)
Q Consensus 448 ~~l~l~~n~i~~~~~~~l~ 466 (484)
..|++++|+++......+.
T Consensus 296 ~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 296 PHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTSEESCCCSCCTTCSSCS
T ss_pred cceEEecccCccccCCccc
Confidence 5566667776665544443
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.6e-22 Score=198.94 Aligned_cols=302 Identities=17% Similarity=0.149 Sum_probs=215.9
Q ss_pred HHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHH
Q 011480 46 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 125 (484)
Q Consensus 46 ~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l 125 (484)
..+++|++|+++++.+.+. + .+..+++|++|++++|.++... +..+++|++|++++|.+....
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC----
T ss_pred hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee----
Confidence 4578899999999998864 1 4677899999999999987631 566789999999999887642
Q ss_pred HHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCC-CChH
Q 011480 126 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGAL 204 (484)
Q Consensus 126 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-~~~~ 204 (484)
+..+++|++|++++|.++... +..+++|++|++++|.+..- .+..+++|+.|++++|. ++..
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence 456789999999999988631 56678999999999998752 26678899999999984 3322
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 205 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 205 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
.+..+++|++|++++|.+.... + ...+.|++|++++|.++.. .+..+++|+.|++++|
T Consensus 165 -------~~~~l~~L~~L~ls~n~l~~l~-------l-~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -------DVTPQTQLTTLDCSFNKITELD-------V-SQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCCC-------C-TTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred -------ccccCCcCCEEECCCCccceec-------c-ccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence 2567889999999999887632 1 2344899999999998874 2677899999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH------HHHHHHHhCC
Q 011480 285 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK------ALSEVLKFHG 358 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~------~l~~~~~~~~ 358 (484)
.+++. + +..+++|+.|++++|.++... +..+++|+.|++++|.+..-.+. .+ ....++
T Consensus 223 ~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~~~~l~ 286 (457)
T 3bz5_A 223 KLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--QAEGCR 286 (457)
T ss_dssp CCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE--ECTTCT
T ss_pred ccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCcc--cccccc
Confidence 98872 2 556789999999999988742 33446666555555433211000 00 013457
Q ss_pred CcCEEeccCCCCChhH------HHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 359 NINTLKLGWCQIGASG------AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 359 ~L~~L~l~~~~i~~~~------~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
+|+.|++++|...+.- ...+ -+..+++|+.|++++|++++.. +.. .++|+.|++++|++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~---l~~-----l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD---VSH-----NTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC---CTT-----CTTCSEEECCSSCCCB
T ss_pred cCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCcccccc---ccc-----CCcCcEEECCCCCCCC
Confidence 8888888888632110 0001 1345678888888888887731 211 2678888888888875
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=2.7e-24 Score=228.32 Aligned_cols=380 Identities=18% Similarity=0.131 Sum_probs=196.9
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|+|++|.+.... +..+..+++|++|++++|.++...... ..+..+++|++|++++|.+....
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~-- 139 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLH----PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLY-- 139 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEEC----TTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCC--
T ss_pred HhcCCCCCCEEECCCCcCcccC----HhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccc--
Confidence 4567899999999999987652 456677899999999999886422111 12456789999999999876532
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCC------CccEEEcC
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS------TIRSLHLN 197 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~------~L~~L~l~ 197 (484)
....+..+++|++|++++|.++......+..... ++|+.|++++|.+.... +..+..++ .|+.|+++
T Consensus 140 -~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 140 -LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp -CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCS
T ss_pred -cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccccc----ccchhhcCCccccCceeEEecC
Confidence 1134556799999999999887644333443311 45555555555543211 00011111 25555555
Q ss_pred CCCCChHHHHHHHHH--------------------------------hhc--CCCcCEEEccCCCCChhHHHHHHHhhcc
Q 011480 198 GNYGGALGANALAKG--------------------------------LEG--NKSLRELHLHGNSIGDEGIRALMSGLSS 243 (484)
Q Consensus 198 ~~~~~~~~~~~l~~~--------------------------------l~~--~~~L~~L~l~~~~l~~~~~~~~~~~l~~ 243 (484)
+|.++......+... +.. .++|+.|++++|.+..... ....
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-----~~~~ 287 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-----RVFE 287 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-----CCSS
T ss_pred CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-----hhhh
Confidence 443322111111000 011 1345555555555443210 0001
Q ss_pred CCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHH
Q 011480 244 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 323 (484)
Q Consensus 244 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 323 (484)
..++|+.|++++|.+... .+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++....
T Consensus 288 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~---- 355 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQD---- 355 (844)
T ss_dssp SCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCCS----
T ss_pred cCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccCh----
Confidence 223555555555555543 122344455555555555554432 11123334555555555555443211
Q ss_pred HHhhcCCCcCEEECCCCCCChhHH--------------HHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCcc
Q 011480 324 RVLKDNSVITSLDLAYNPIGADGA--------------KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 389 (484)
Q Consensus 324 ~~l~~~~~L~~L~ls~n~i~~~~~--------------~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 389 (484)
..+..+++|++|++++|.++.... ..+. ....+++.|++++|.+++.... ..+..+++|+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~---~~~~~l~~L~ls~N~l~~l~~~---~~~~~l~~L~ 429 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDIL---YFLLRVPHLQ 429 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC---CCCTTCCEEECCSCCCCSSTTH---HHHTTCTTCC
T ss_pred hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc---ccccccceeecccCccccCchh---hhhhcCCccc
Confidence 123334555555555554432110 0000 0123556666666665543221 1234567888
Q ss_pred EEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHH-HHHHHhCCccceeEeeccCCcCchhhhhhhhh
Q 011480 390 ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI-AQALKANEDVAVTSLNLANNFLTKFGQSALTD 467 (484)
Q Consensus 390 ~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 467 (484)
.|++++|.++....... +. ..++|+.|++++|.++......+ ...+...+ .|+.|++++|.++......+..
T Consensus 430 ~L~Ls~N~l~~~~~~~~---~~-~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQT---PS-ENPSLEQLFLGENMLQLAWETELCWDVFEGLS--HLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp EEEEESCCCCCCCSSSS---SC-SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC--CEECCCCCHHHHTTCCTTSSSS
T ss_pred eeeCCCCcccccccccc---cc-cCCccccccCCCCccccccccccchhhhcCcc--cccEEECCCCcccccChhHccc
Confidence 88888887764321110 00 12678888888887752211000 01122223 4888888888888766665543
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-19 Score=171.17 Aligned_cols=158 Identities=19% Similarity=0.257 Sum_probs=74.7
Q ss_pred cceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCC-CccEEEccCC--CCChhHHHH
Q 011480 247 KLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNR-TITTIDLGGN--NIHSKGASA 321 (484)
Q Consensus 247 ~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~-~L~~L~l~~~--~l~~~~~~~ 321 (484)
+|++|++++| .+++.+ ++..+..+++|++|++++| .+++.++. ..+..++ +|++|++++| .+++.++.
T Consensus 143 ~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~- 215 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLS- 215 (336)
T ss_dssp TCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHH-
T ss_pred CCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHH-
Confidence 4444444444 343321 2223444555555555555 55543322 2233344 5555555555 34433322
Q ss_pred HHHHhhcCCCcCEEECCCCC-CChhHHHHHHHHHHhCCCcCEEeccCC-CCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 322 IARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 322 l~~~l~~~~~L~~L~ls~n~-i~~~~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
..+..+++|++|++++|. +++..+..+ ..+++|++|++++| .+++.+.. .+..+++|+.|++++| ++
T Consensus 216 --~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 216 --TLVRRCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQHLSLSRCYDIIPETLL----ELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp --HHHHHCTTCSEEECTTCTTCCGGGGGGG----GGCTTCCEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTS-SC
T ss_pred --HHHhhCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCCEeeCCCCCCCCHHHHH----HHhcCCCCCEEeccCc-cC
Confidence 223334555555555555 444433322 23455666666655 34433321 2233566666666666 66
Q ss_pred chhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 400 DEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 400 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
+.++..+... +..|++++|+++.
T Consensus 285 ~~~~~~l~~~-------l~~L~l~~n~l~~ 307 (336)
T 2ast_B 285 DGTLQLLKEA-------LPHLQINCSHFTT 307 (336)
T ss_dssp TTCHHHHHHH-------STTSEESCCCSCC
T ss_pred HHHHHHHHhh-------CcceEEecccCcc
Confidence 5555444322 5555566666554
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=4.2e-22 Score=196.06 Aligned_cols=317 Identities=17% Similarity=0.172 Sum_probs=232.3
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHH
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 124 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~ 124 (484)
+..+++|++|++++|.+.... +..+++|++|++++|.++... +..+++|++|++++|.+....
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~--- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD--- 122 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC---
T ss_pred hcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec---
Confidence 567899999999999998741 567899999999999987642 567789999999999887531
Q ss_pred HHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChH
Q 011480 125 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 204 (484)
Q Consensus 125 l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 204 (484)
+..+++|++|++++|.++... +..++.|++|++++|..... + .+..+++|+.|++++|.++..
T Consensus 123 ----~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~----~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 123 ----VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITK----L--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ----CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCC----C--CCTTCTTCCEEECCSSCCCCC
T ss_pred ----CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCcccc----c--ccccCCcCCEEECCCCcccee
Confidence 456799999999999988731 55678999999999943221 1 256789999999999988763
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 205 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 205 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
. +..+++|+.|++++|.+.+.. + ...++|++|++++|.+.+ ++ +..+++|+.|++++|
T Consensus 186 ~-------l~~l~~L~~L~l~~N~l~~~~-------l-~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 186 D-------VSQNKLLNRLNCDTNNITKLD-------L-NQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp C-------CTTCTTCCEEECCSSCCSCCC-------C-TTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSS
T ss_pred c-------cccCCCCCEEECcCCcCCeec-------c-ccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeCC
Confidence 2 568899999999999987742 2 234589999999999988 33 678899999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHH------HHHHHhhcCCCcCEEECCCCCCChhH------HHHHHH
Q 011480 285 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS------AIARVLKDNSVITSLDLAYNPIGADG------AKALSE 352 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~------~l~~~l~~~~~L~~L~ls~n~i~~~~------~~~l~~ 352 (484)
.+++.. +..++.|+.|+++++.+..-.+. .+. ...+++|+.|++++|...... +..+
T Consensus 244 ~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L-- 312 (457)
T 3bz5_A 244 PLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-- 312 (457)
T ss_dssp CCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC--
T ss_pred cCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe--
Confidence 988742 23345555555554433221000 011 345699999999999632211 1111
Q ss_pred HHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHH
Q 011480 353 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 432 (484)
Q Consensus 353 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 432 (484)
.+..+++|++|++++|.+++.. +..+++|+.|++++|++++. +.|..|+++.|.+...+
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l-------------~~L~~L~l~~n~l~g~~- 371 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF-------------SSVGKIPALNNNFEAEG- 371 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC-------------TTGGGSSGGGTSEEEEE-
T ss_pred chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc-------------cccccccccCCcEEecc-
Confidence 1345789999999999998741 66789999999999999972 44677777777765431
Q ss_pred HHHHHHHHhCCccceeEeeccCCcCch
Q 011480 433 FAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 433 ~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
.. ..+..+++++|+++.
T Consensus 372 --------~~--~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 372 --------QT--ITMPKETLTNNSLTI 388 (457)
T ss_dssp --------EE--EECCCBCCBTTBEEE
T ss_pred --------ee--eecCccccccCcEEE
Confidence 12 247777788777764
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.2e-21 Score=184.07 Aligned_cols=275 Identities=17% Similarity=0.100 Sum_probs=128.1
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 185 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 185 (484)
+|++|++++|.+...... .+..+++|++|++++|.++.... ..+..+++|++|++++|.+..-. ...+
T Consensus 53 ~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~----~~~~ 120 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEE----DSFSSLGSLEHLDLSYNYLSNLS----SSWF 120 (353)
T ss_dssp TCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSSCC----HHHH
T ss_pred cCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCH----hhcCCCCCCCEEECCCCcCCcCC----HhHh
Confidence 566666666655432211 22334556666666665554211 12333455566666555554211 1223
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHH
Q 011480 186 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 265 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 265 (484)
..+++|++|++++|.++.... ...+..+++|++|++++|. .+...
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~---~~~~~~l~~L~~L~l~~n~----------------------------~~~~~---- 165 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGE---TSLFSHLTKLQILRVGNMD----------------------------TFTKI---- 165 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESS----------------------------SCCEE----
T ss_pred CCCccCCEEECCCCCCcccCc---hhhhccCCCCcEEECCCCc----------------------------ccccc----
Confidence 445555555555554432110 0023344455555555442 12221
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh
Q 011480 266 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345 (484)
Q Consensus 266 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~ 345 (484)
.+..+..+++|++|++++|.++.. ....+..+++|++|++++|.++..... .+..+++|++|++++|.++..
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLEI----FVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHHH----HHHHTTTEEEEEEESCBCTTC
T ss_pred CHHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchhh----hhhhcccccEEECCCCccccc
Confidence 111233444455555555444432 112233345555555555555432211 112235555555555554433
Q ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCC
Q 011480 346 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 425 (484)
Q Consensus 346 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n 425 (484)
....+.. ....+.++.++++++.+++.....++..+..+++|+.|++++|.++......+.. .++|++|++++|
T Consensus 238 ~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-----l~~L~~L~L~~N 311 (353)
T 2z80_A 238 HFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR-----LTSLQKIWLHTN 311 (353)
T ss_dssp CCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS
T ss_pred ccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc-----CCCCCEEEeeCC
Confidence 2222211 1234566667777776666666666666666777777777777666432211111 156777777777
Q ss_pred CCChh--HHHHHHHHHHh
Q 011480 426 EIRDD--GAFAIAQALKA 441 (484)
Q Consensus 426 ~i~~~--~~~~l~~~l~~ 441 (484)
+++.. ....+...+.+
T Consensus 312 ~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 312 PWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp CBCCCHHHHHHHHHHHHH
T ss_pred CccCcCCCcHHHHHHHHh
Confidence 66543 24444444443
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.8e-22 Score=190.96 Aligned_cols=184 Identities=19% Similarity=0.253 Sum_probs=86.7
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+...+. .+..+..+++|++|++++|.++.- +..+ .++|++|++++|.++... ...+
T Consensus 146 ~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~----~~~~ 212 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTI-----PQGL--PPSLTELHLDGNKITKVD----AASL 212 (330)
T ss_dssp TCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCSC-----CSSC--CTTCSEEECTTSCCCEEC----TGGG
T ss_pred cccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCccccC-----Cccc--cccCCEEECCCCcCCccC----HHHh
Confidence 45555555554432111 122344555666666666555431 1111 245666666666665432 1234
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 406 (484)
..+++|++|++++|.++..... .+..+++|++|++++|.++. ++..+..+++|+.|++++|.++..+...+
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred cCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhc
Confidence 4456666666666665543221 22344666666666666552 22234455666777777666665543333
Q ss_pred HHHH-HhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCc
Q 011480 407 AQSF-KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 456 (484)
Q Consensus 407 ~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~ 456 (484)
+... ......++.+++++|.+....+.. ..+..++ .++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~--~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVY--VRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCC--CGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCc--ccccccc--ceeEEEecccC
Confidence 2110 001245666777777665422111 1122222 36666666653
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.9e-21 Score=183.82 Aligned_cols=133 Identities=20% Similarity=0.161 Sum_probs=58.9
Q ss_pred CCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHH
Q 011480 77 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 156 (484)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 156 (484)
+.++.|++++|.++..... .+..+++|++|++++|.+.... ...+..+++|++|++++|.++... ..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~-----~~ 118 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELP-----EK 118 (330)
T ss_dssp TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBCC-----SS
T ss_pred CCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeC----HHHhcCCCCCCEEECCCCcCCccC-----hh
Confidence 4555666666555432211 1234455555665555554321 112233455555555555544211 00
Q ss_pred HhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 011480 157 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 157 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 230 (484)
..++|++|++++|.+.... ...+..+++|+.|++++|.++..+. .+..+..+++|++|++++|.+.
T Consensus 119 --~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 119 --MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp --CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCC
T ss_pred --hcccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCccc
Confidence 0134555555555554221 2233445555555555554432111 1122344555555555555443
No 54
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.80 E-value=2.6e-18 Score=147.15 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=60.4
Q ss_pred HHHHhCCCccEEEccCC-CCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhH
Q 011480 296 DALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 374 (484)
Q Consensus 296 ~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~ 374 (484)
..+..+++|++|++++| .++++++..++..+..+++|++|+|++|.+++++...++..+..+++|++|++++|.|++.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33333444444444444 44444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHcCCCccEEEe--ccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh
Q 011480 375 AEFVADMLRYNNTISILDL--RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 430 (484)
Q Consensus 375 ~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 430 (484)
...+..++..+++|++|++ ++|.|++.|...++..+.. +++|++|++++|.|++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCcCEEeccCCCCChH
Confidence 4444444444444444444 4444444444444444432 24444444444444433
No 55
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.79 E-value=2.9e-18 Score=146.92 Aligned_cols=146 Identities=23% Similarity=0.207 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCC
Q 011480 263 AFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 341 (484)
Q Consensus 263 ~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~ 341 (484)
...+...+..+++|++|+|++| .++++++..++..+..+++|++|+|++|.+++++...++.++..+++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3457777888888999999998 999999988988888888999999999999999998899988888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCcCEEec--cCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHH
Q 011480 342 IGADGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 410 (484)
Q Consensus 342 i~~~~~~~l~~~~~~~~~L~~L~l--~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 410 (484)
|++.++..++..+..+++|++|++ ++|.+++.+...+.+++..+++|++|++++|.+++.|. ++..+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L 173 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAM 173 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHH
Confidence 999999999988888889999999 78899999988899999999999999999999888763 44444
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=6.2e-21 Score=182.08 Aligned_cols=258 Identities=17% Similarity=0.167 Sum_probs=162.3
Q ss_pred cccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHH
Q 011480 48 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 127 (484)
Q Consensus 48 ~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~ 127 (484)
++.....+.+++.++.. +..+ .++|++|++++|.++..... .+..+++|++|++++|.+..... .
T Consensus 30 C~~~~~c~~~~~~l~~i-----P~~~--~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-----PSGL--TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEE----D 94 (353)
T ss_dssp ECTTSEEECCSTTCSSC-----CTTC--CTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECT----T
T ss_pred CCCCeEeeCCCCCcccc-----cccc--cccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCH----h
Confidence 44455677777776543 2222 36899999999998754322 34567899999999998875422 2
Q ss_pred HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHH--HHhcCCCccEEEcCCC-CCChH
Q 011480 128 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGN-YGGAL 204 (484)
Q Consensus 128 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~--~l~~~~~L~~L~l~~~-~~~~~ 204 (484)
.+..+++|++|++++|.++.... ..+..+++|++|++++|.+.. ++. .+..+++|+.|++++| .++..
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCH----HHHTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred hcCCCCCCCEEECCCCcCCcCCH----hHhCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCcccccc
Confidence 34557999999999999886432 335667999999999998863 222 4667899999999998 35432
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC
Q 011480 205 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 284 (484)
Q Consensus 205 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~ 284 (484)
.. ..+..+++|++|++++|.+.......+ ....+|++|++++|.+... ....+..+++|+.|++++|
T Consensus 166 ~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 166 QR----KDFAGLTFLEELEIDASDLQSYEPKSL-----KSIQNVSHLILHMKQHILL----LEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CT----TTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSCSTTH----HHHHHHHTTTEEEEEEESC
T ss_pred CH----HHccCCCCCCEEECCCCCcCccCHHHH-----hccccCCeecCCCCccccc----hhhhhhhcccccEEECCCC
Confidence 21 335567788888888887765321111 1233677777777776542 1122344666777777777
Q ss_pred CCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 285 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 285 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
.+++.....+.. ......++.++++++.+++.+...+...+..+++|++|++++|.++
T Consensus 233 ~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 233 DLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp BCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 665432211211 1224455566666666666555555555555556666666555554
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=3.7e-22 Score=206.13 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=96.0
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|+|++|.|+... ...|..+++|++|++++|+++.... .++..+++|++|+|++|.+..... ..
T Consensus 52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~~----~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLAL----GA 119 (635)
T ss_dssp TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECG----GG
T ss_pred cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCCH----HH
Confidence 36899999999887543 2345677899999999998764322 234567789999999988765322 23
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 204 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 204 (484)
+..+++|++|++++|.++.... ..+..+++|++|++++|.+... .++..+..++.|+.|++++|.++..
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCcccccc
Confidence 4556889999999988775321 1245668899999998887531 1234556678889998888877543
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.5e-22 Score=191.64 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 185 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 185 (484)
++++|++++|.+..... ..+..+++|++|++++|.++... +..+..+++|++|++++|.+.. ++..+
T Consensus 55 ~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~-----l~~~~ 121 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKIH----EKAFSPLRKLQKLYISKNHLVE-----IPPNL 121 (332)
T ss_dssp TCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEEC----GGGSTTCTTCCEEECCSSCCCS-----CCSSC
T ss_pred CCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCccC----HhHhhCcCCCCEEECCCCcCCc-----cCccc
Confidence 45555555555443211 12233455555555555554421 1223334555555555555431 11111
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 011480 186 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 230 (484)
.++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 122 --~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 122 --PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp --CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCB
T ss_pred --cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccc
Confidence 1455555555554442211 12344555555555555543
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=1.4e-21 Score=184.92 Aligned_cols=295 Identities=17% Similarity=0.125 Sum_probs=189.9
Q ss_pred cceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHH
Q 011480 50 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 129 (484)
Q Consensus 50 ~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l 129 (484)
.++.++++++.+... +..+ .++++.|++++|.++.... ..+..+++|++|++++|.+..... ..+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKIHE----KAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECG----GGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCccCH----hHh
Confidence 588999998877542 2211 3689999999998874322 234567889999999998875422 334
Q ss_pred HhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHH
Q 011480 130 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 209 (484)
Q Consensus 130 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l 209 (484)
..+++|++|++++|.++... ..+ .++|++|++++|.+.... ...+..+++|+.|++++|.++..+. .
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~-----~~~--~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~ 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIP-----PNL--PSSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLENSGF--E 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCC-----SSC--CTTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCBGGGS--C
T ss_pred hCcCCCCEEECCCCcCCccC-----ccc--cccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccccCCC--C
Confidence 55799999999999887421 111 268999999999986321 2346778999999999998864221 1
Q ss_pred HHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcH
Q 011480 210 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 289 (484)
Q Consensus 210 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 289 (484)
+..+..+ +|++|++++|.+..-. ..+ ..+|++|++++|.+... .+..+..+++|+.|++++|.+++.
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~-----~~~---~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIP-----KDL---PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCC-----SSS---CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccccCC-ccCEEECcCCCCCccC-----ccc---cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1233444 8999999998876521 111 13788888988887764 223456778888888888877653
Q ss_pred HHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHH--HhCCCcCEEeccC
Q 011480 290 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL--KFHGNINTLKLGW 367 (484)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~--~~~~~L~~L~l~~ 367 (484)
. ...+..+++|++|++++|+++. +...+..+++|++|++++|.++......+.... ...+.|+.|++++
T Consensus 233 ~----~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 233 E----NGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp C----TTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred C----hhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 1 1234566788888888887773 334456678888888888877655433332110 0124566666666
Q ss_pred CCCChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 368 CQIGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 368 ~~i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
|.+..... ....+..++.|+.+++++|
T Consensus 304 N~~~~~~~--~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEV--QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGS--CGGGGTTBCCSTTEEC---
T ss_pred Cccccccc--Ccccccccchhhhhhcccc
Confidence 66542111 1123344566666666655
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1e-18 Score=171.68 Aligned_cols=279 Identities=18% Similarity=0.191 Sum_probs=171.8
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|+++++.+.... . ..++|++|++++|.++... ...++|++|++++|.+..-. ..
T Consensus 71 ~~l~~L~l~~~~l~~lp-----~---~~~~L~~L~l~~n~l~~lp--------~~~~~L~~L~l~~n~l~~l~-----~~ 129 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLP-----E---LPPHLESLVASCNSLTELP--------ELPQSLKSLLVDNNNLKALS-----DL 129 (454)
T ss_dssp HTCSEEECTTSCCSCCC-----S---CCTTCSEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCCC-----SC
T ss_pred cCCCEEEecCCccccCC-----C---CcCCCCEEEccCCcCCccc--------cccCCCcEEECCCCccCccc-----CC
Confidence 45788888888876521 1 1368889999888876421 12357888888888775421 11
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 208 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 208 (484)
.++|++|++++|.++.. + .+..+++|++|++++|.+.. ++. ...+|+.|++++|.++..
T Consensus 130 ---~~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~~-----lp~---~~~~L~~L~L~~n~l~~l---- 188 (454)
T 1jl5_A 130 ---PPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKK-----LPD---LPPSLEFIAAGNNQLEEL---- 188 (454)
T ss_dssp ---CTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSSC----
T ss_pred ---CCCCCEEECcCCCCCCC-----c-ccCCCCCCCEEECCCCcCcc-----cCC---CcccccEEECcCCcCCcC----
Confidence 25788888888887752 2 25667888888888888753 111 135888888888877652
Q ss_pred HHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 209 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 209 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
+ .+..+++|++|++++|.+.+- +....+|++|++++|.+.. ++ .+..+++|++|++++|.++.
T Consensus 189 -~-~~~~l~~L~~L~l~~N~l~~l---------~~~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 189 -P-ELQNLPFLTAIYADNNSLKKL---------PDLPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp -C-CCTTCTTCCEEECCSSCCSSC---------CCCCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS
T ss_pred -c-cccCCCCCCEEECCCCcCCcC---------CCCcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc
Confidence 1 366788888888888877541 1112378888888887774 33 25677888888888887764
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
- .. ..++|++|++++|+++.. .. ..++|++|++++|.++... ...++|++|++++|
T Consensus 252 l-----~~---~~~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~ls~N~l~~l~--------~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 252 L-----PD---LPPSLEALNVRDNYLTDL-----PE---LPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSN 307 (454)
T ss_dssp C-----CS---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSEES--------CCCTTCCEEECCSS
T ss_pred c-----cc---cccccCEEECCCCccccc-----Cc---ccCcCCEEECcCCccCccc--------CcCCcCCEEECcCC
Confidence 1 11 136777888887776651 11 1266777777777665411 00145666666666
Q ss_pred CCChhHHHHHHHHHHcC-CCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 369 QIGASGAEFVADMLRYN-NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
.+++.. .. ++|+.|++++|.++.... ..++|+.|++++|+++
T Consensus 308 ~l~~i~---------~~~~~L~~L~Ls~N~l~~lp~---------~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 308 EIRSLC---------DLPPSLEELNVSNNKLIELPA---------LPPRLERLIASFNHLA 350 (454)
T ss_dssp CCSEEC---------CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCS
T ss_pred cCCccc---------CCcCcCCEEECCCCccccccc---------cCCcCCEEECCCCccc
Confidence 554311 11 355556665555543110 0144555555555554
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=7.4e-22 Score=184.86 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=39.1
Q ss_pred ccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHH
Q 011480 304 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 383 (484)
Q Consensus 304 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 383 (484)
|+.|++++|.++.. ....+..+++|+.|++++|.++..... +...++|++|++++|.+++.. +..+.
T Consensus 199 L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~----p~~l~ 265 (313)
T 1ogq_A 199 LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTL----PQGLT 265 (313)
T ss_dssp CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECC----CGGGG
T ss_pred ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcC----ChHHh
Confidence 55555555554432 122334445555555555554322111 122345555555555554321 12233
Q ss_pred cCCCccEEEeccCCCCc
Q 011480 384 YNNTISILDLRANGLRD 400 (484)
Q Consensus 384 ~~~~L~~L~l~~n~i~~ 400 (484)
.+++|+.|++++|.+++
T Consensus 266 ~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GCTTCCEEECCSSEEEE
T ss_pred cCcCCCEEECcCCcccc
Confidence 44556666666655543
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=3e-21 Score=199.36 Aligned_cols=385 Identities=15% Similarity=0.156 Sum_probs=212.4
Q ss_pred HHHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHH
Q 011480 44 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 123 (484)
Q Consensus 44 ~~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~ 123 (484)
.+..+++|++|+|++|.+.... ...+..+++|++|++++|+++.... ..+..+++|++|++++|.+.....
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~l~~l~~----~~f~~L~~L~~L~Ls~N~l~~l~~- 141 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLEN- 141 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECG----GGGTTCTTCCEEECTTSCCCCSTT-
T ss_pred HHhCCCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCcCCCCCH----HHhcCCCCCCEEECCCCcCCCCCh-
Confidence 3567889999999999987542 2346678999999999998865332 235667889999999998764321
Q ss_pred HHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcC---------------
Q 011480 124 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN--------------- 188 (484)
Q Consensus 124 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~--------------- 188 (484)
..+..+++|++|++++|.+.... ++..+..++.|++|++++|.+.......+.. +...
T Consensus 142 ---~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 142 ---FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp ---CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCC
T ss_pred ---hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhhhcccCccc
Confidence 12445688999999999876421 2234556788999999998875422111111 1111
Q ss_pred ---------CCccEEEcCCCCCChHHHHHHHH------------------------------------------------
Q 011480 189 ---------STIRSLHLNGNYGGALGANALAK------------------------------------------------ 211 (484)
Q Consensus 189 ---------~~L~~L~l~~~~~~~~~~~~l~~------------------------------------------------ 211 (484)
..++.+.+..+............
T Consensus 215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 11223333333222111111000
Q ss_pred ----------------------------HhhcCCCcCEEEccCCCCChhH---HHHHHH---------h--hccCCCcce
Q 011480 212 ----------------------------GLEGNKSLRELHLHGNSIGDEG---IRALMS---------G--LSSRKGKLA 249 (484)
Q Consensus 212 ----------------------------~l~~~~~L~~L~l~~~~l~~~~---~~~~~~---------~--l~~~~~~L~ 249 (484)
.+.....++.|++.++.+.... +..+.. . -....+.++
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~ 374 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 374 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCC
T ss_pred ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccc
Confidence 0111223444444443221100 000000 0 000123678
Q ss_pred EEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH--------------------HHHHHHHhCCCccEEEc
Q 011480 250 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE--------------------KIADALKQNRTITTIDL 309 (484)
Q Consensus 250 ~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~--------------------~l~~~l~~~~~L~~L~l 309 (484)
.++++.|.+...+. .+.......+|+.+++..+........ .-...+..+..++.+++
T Consensus 375 ~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 375 FLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp EEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cchhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 88888887654221 122233445555555554422110000 00011233456667777
Q ss_pred cCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCcc
Q 011480 310 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 389 (484)
Q Consensus 310 ~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~ 389 (484)
+.|.+.... ...+...+.|+.|++++|.+..... ...+...++|++|++++|.+++.... .+..+++|+
T Consensus 453 s~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N~L~~l~~~----~f~~l~~L~ 521 (635)
T 4g8a_A 453 SHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQ 521 (635)
T ss_dssp TTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred ccccccccc----ccccccchhhhhhhhhhcccccccC---chhhhhccccCEEECCCCccCCcChH----HHcCCCCCC
Confidence 777655431 2234455788888888875332111 12234567899999999988765433 345568899
Q ss_pred EEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCc-hhhhhhhhh
Q 011480 390 ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT-KFGQSALTD 467 (484)
Q Consensus 390 ~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~l~~ 467 (484)
+|+|++|+++......+.. -++|+.|++++|+|+......+. ..+ .+|+.|++++|.+. +-....|.+
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~----~l~-~~L~~L~L~~Np~~C~C~~~~~~~ 590 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKC-----LNSLQVLDYSLNHIMTSKKQELQ----HFP-SSLAFLNLTQNDFACTCEHQSFLQ 590 (635)
T ss_dssp EEECTTSCCCBCCCGGGTT-----CTTCCEEECTTSCCCBCCSSCTT----CCC-TTCCEEECTTCCBCCSGGGHHHHH
T ss_pred EEECCCCcCCCCChhHHhC-----CCCCCEEECCCCcCCCCCHHHHH----hhh-CcCCEEEeeCCCCcccCCcHHHHH
Confidence 9999999887754333322 16799999999988765443332 121 25889999988754 344444433
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=8.8e-20 Score=171.18 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+....... ....+++|++|++++|.+++. . ....+++|++|++++|.++... ..+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~l~-----~~~ 210 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAE---LAASSDTLEHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSNKLAFMG-----PEF 210 (317)
T ss_dssp SEEEEECTTSCCCEEEGGG---GGGGTTTCCEEECTTSCCCEE-----E-CCCCCTTCCEEECCSSCCCEEC-----GGG
T ss_pred CCCEEECCCCCCCcccHHH---HhhccCcCCEEECCCCcCccc-----c-cccccccCCEEECCCCcCCcch-----hhh
Confidence 4555555555555421110 112345555666655555442 0 0112455666666666655421 123
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEec
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 394 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~ 394 (484)
..+++|++|++++|.++.. ...+..+++|+.|++++|.+... .+...+..++.|+.++++
T Consensus 211 ~~l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred cccCcccEEECcCCcccch-----hhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 4446666666666655531 11223345666666666666522 233334445556666555
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=8.3e-20 Score=171.38 Aligned_cols=218 Identities=23% Similarity=0.252 Sum_probs=112.0
Q ss_pred CCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHH
Q 011480 132 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 211 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 211 (484)
+++|++|++++|.++.... ..+..+++|++|++++|.+.... .+..+++|+.|++++|.++.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~-------- 94 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQE-------- 94 (317)
T ss_dssp GGGCSEEECTTSCCCCCCH----HHHTTCTTCCEEECTTSCCEEEE------EETTCTTCCEEECCSSEEEE--------
T ss_pred CCCCCEEECcCCccCcCCH----HHhhCCCcCCEEECCCCcCCcch------hhhhcCCCCEEECcCCcccc--------
Confidence 4566666666666655322 23344566666666666654321 04455666666666665432
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
+...++|++|++++|.+..... ...++|++|++++|.+... .+..+..+++|++|++++|.+++...
T Consensus 95 -l~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 95 -LLVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp -EEECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----GGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred -ccCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----cchhhhccCCCCEEECCCCCCCcccH
Confidence 1234566666666666654321 1123566677766666653 12234455666666666666655321
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
..+ ...++.|++|++++|.++.. .....+++|++|++++|.++.... .+..+++|++|++++|.++
T Consensus 162 ~~~---~~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 162 AEL---AASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp GGG---GGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTSCCC
T ss_pred HHH---hhccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCcchh-----hhcccCcccEEECcCCccc
Confidence 111 12345666666666666543 111224666666666665553211 1233455666666666554
Q ss_pred hhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 372 ASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 372 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
.. +..+..+++|+.|++++|.++
T Consensus 228 ~l-----~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 LI-----EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EE-----CTTCCCCTTCCEEECTTCCCB
T ss_pred ch-----hhHhhcCCCCCEEEccCCCcc
Confidence 31 122334455555555555555
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=4.5e-18 Score=167.18 Aligned_cols=281 Identities=16% Similarity=0.161 Sum_probs=150.3
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
+++++|+++++.+... +. ..++|++|++++|.++... . ..++|++|++++|.+..- . .
T Consensus 91 ~~L~~L~l~~n~l~~l-----p~---~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L~L~~n~l~~l-----p-~ 148 (454)
T 1jl5_A 91 PHLESLVASCNSLTEL-----PE---LPQSLKSLLVDNNNLKALS-----D---LPPLLEYLGVSNNQLEKL-----P-E 148 (454)
T ss_dssp TTCSEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSCCC-----S---CCTTCCEEECCSSCCSSC-----C-C
T ss_pred CCCCEEEccCCcCCcc-----cc---ccCCCcEEECCCCccCccc-----C---CCCCCCEEECcCCCCCCC-----c-c
Confidence 5678888888777642 11 1367777777777765311 0 114677777777766532 1 1
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 208 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 208 (484)
+..+++|++|++++|.++.. +. ..++|++|++++|.+.. ++ .+..+++|+.|++++|.++...
T Consensus 149 ~~~l~~L~~L~l~~N~l~~l-----p~---~~~~L~~L~L~~n~l~~-----l~-~~~~l~~L~~L~l~~N~l~~l~--- 211 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKL-----PD---LPPSLEFIAAGNNQLEE-----LP-ELQNLPFLTAIYADNNSLKKLP--- 211 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSSCC---
T ss_pred cCCCCCCCEEECCCCcCccc-----CC---CcccccEEECcCCcCCc-----Cc-cccCCCCCCEEECCCCcCCcCC---
Confidence 44567777777777776541 11 12467777777776653 12 3556677777777777654311
Q ss_pred HHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 209 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 209 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
...++|++|++++|.+.. ++. + ...++|++|++++|.+.. ++. ..++|+.|++++|.+++
T Consensus 212 -----~~~~~L~~L~l~~n~l~~--lp~----~-~~l~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 212 -----DLPLSLESIVAGNNILEE--LPE----L-QNLPFLTTIYADNNLLKT-----LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp -----CCCTTCCEEECCSSCCSS--CCC----C-TTCTTCCEEECCSSCCSS-----CCS---CCTTCCEEECCSSCCSC
T ss_pred -----CCcCcccEEECcCCcCCc--ccc----c-CCCCCCCEEECCCCcCCc-----ccc---cccccCEEECCCCcccc
Confidence 012466777777666542 111 1 123366677777666654 111 23556666666666554
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
+.. ..++|++|++++|.++... . -.++|++|++++|.+.... ...++|++|++++|
T Consensus 272 -----l~~---~~~~L~~L~ls~N~l~~l~-----~---~~~~L~~L~l~~N~l~~i~--------~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 272 -----LPE---LPQSLTFLDVSENIFSGLS-----E---LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNN 327 (454)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSEES-----C---CCTTCCEEECCSSCCSEEC--------CCCTTCCEEECCSS
T ss_pred -----cCc---ccCcCCEEECcCCccCccc-----C---cCCcCCEEECcCCcCCccc--------CCcCcCCEEECCCC
Confidence 111 1256666666666665411 0 0145666666666554311 00135666666666
Q ss_pred CCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 369 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
.+++... ..++|+.|++++|.++.... ..++|++|++++|+++.
T Consensus 328 ~l~~lp~--------~~~~L~~L~L~~N~l~~lp~---------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 328 KLIELPA--------LPPRLERLIASFNHLAEVPE---------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSCCCC--------CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSS
T ss_pred ccccccc--------cCCcCCEEECCCCccccccc---------hhhhccEEECCCCCCCc
Confidence 5543111 12556666666665553211 01456666666665544
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.5e-21 Score=182.76 Aligned_cols=253 Identities=18% Similarity=0.198 Sum_probs=155.6
Q ss_pred CccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCC-CCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh
Q 011480 162 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
++++|+++++.+... ..++..+..++.|+.|++++ +.+.. .++..+..+++|++|++++|.+.+.....
T Consensus 51 ~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---- 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDF---- 120 (313)
T ss_dssp CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGG----
T ss_pred eEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHH----
Confidence 344455555444310 01223344455555555552 43321 11233456666777777666664321111
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCC-CccEEEccCCCCChhHH
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGA 319 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~l~~~~~ 319 (484)
+ ...++|++|++++|.+... ++..+..+++|++|++++|.+++. ++..+..++ .|++|++++|.++...
T Consensus 121 ~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~~- 190 (313)
T 1ogq_A 121 L-SQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGKI- 190 (313)
T ss_dssp G-GGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEEC-
T ss_pred H-hCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeeccC-
Confidence 1 1223677777777766643 344567788888999888888643 333455566 8999999999887542
Q ss_pred HHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 320 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 320 ~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
...+...+ |++|++++|.+..... ..+...++|++|++++|.++..... +...++|++|++++|.++
T Consensus 191 ---~~~~~~l~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 191 ---PPTFANLN-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ---CGGGGGCC-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCE
T ss_pred ---ChHHhCCc-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCccc
Confidence 23344445 9999999998765432 2334568999999999988753222 455689999999999998
Q ss_pred chhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCc-Cch
Q 011480 400 DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF-LTK 459 (484)
Q Consensus 400 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~-i~~ 459 (484)
+.....+.. .++|+.|++++|+++...... ...+ .|+.+++.+|. +..
T Consensus 258 ~~~p~~l~~-----l~~L~~L~Ls~N~l~~~ip~~-----~~l~--~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQGLTQ-----LKFLHSLNVSFNNLCGEIPQG-----GNLQ--RFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCGGGGG-----CTTCCEEECCSSEEEEECCCS-----TTGG--GSCGGGTCSSSEEES
T ss_pred CcCChHHhc-----CcCCCEEECcCCcccccCCCC-----cccc--ccChHHhcCCCCccC
Confidence 654443332 278999999999887432221 1222 48889999986 443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=9e-18 Score=170.19 Aligned_cols=284 Identities=16% Similarity=0.122 Sum_probs=196.0
Q ss_pred ccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHH
Q 011480 49 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 128 (484)
Q Consensus 49 ~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~ 128 (484)
.+++.|+++++.+... +..+ .++|+.|++++|.++... . ..++|++|++++|.++.-. .
T Consensus 40 ~~l~~L~ls~n~L~~l-----p~~l--~~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~lp-----~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-----PDCL--PAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSLP-----V- 98 (622)
T ss_dssp HCCCEEECCSSCCSCC-----CSCC--CTTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCCC-----C-
T ss_pred CCCcEEEecCCCcCcc-----Chhh--CCCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcCC-----C-
Confidence 4589999999988732 2222 278999999999886321 1 3568999999999876421 1
Q ss_pred HHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHH
Q 011480 129 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 208 (484)
Q Consensus 129 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 208 (484)
..++|++|++++|.++... . ..++|+.|++++|.+.. ++. ..++|+.|++++|.++...
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~-----~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~--- 157 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLP-----A---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLP--- 157 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCC-----C---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCC---
T ss_pred --CCCCCCEEECcCCcCCCCC-----C---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCCCcC---
Confidence 3588999999999887631 1 35789999999998753 221 2478999999988776421
Q ss_pred HHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 209 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 209 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
...++|+.|++++|.+..-. ...++|+.|++++|.+.. ++ ...++|+.|++++|.++.
T Consensus 158 -----~~~~~L~~L~L~~N~l~~l~---------~~~~~L~~L~Ls~N~l~~-----l~---~~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 158 -----ALPSELCKLWAYNNQLTSLP---------MLPSGLQELSVSDNQLAS-----LP---TLPSELYKLWAYNNRLTS 215 (622)
T ss_dssp -----CCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSS
T ss_pred -----CccCCCCEEECCCCCCCCCc---------ccCCCCcEEECCCCCCCC-----CC---CccchhhEEECcCCcccc
Confidence 13467889999988876521 233478999999988876 22 124678899998888765
Q ss_pred HHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 289 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
- .. ..++|++|++++|.++... ..+++|+.|++++|.++.... ..++|+.|++++|
T Consensus 216 l-----~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 L-----PA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp C-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred c-----CC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 2 11 2478889999998887621 345888999999888764221 3478888999988
Q ss_pred CCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHh--cCccccEEEcCCC
Q 011480 369 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV--VNEALTSIDLAFN 425 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~--~~~~L~~L~l~~n 425 (484)
.++.. +..+..+++|+.|++++|.++......+...... ....+..++++++
T Consensus 272 ~L~~l-----p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~ 325 (622)
T 3g06_A 272 QLTRL-----PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325 (622)
T ss_dssp CCCSC-----CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC
T ss_pred CCCcC-----CHHHhhccccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCC
Confidence 88732 3345667888889998888888777666554321 1123445555554
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.2e-17 Score=169.33 Aligned_cols=286 Identities=15% Similarity=0.093 Sum_probs=207.1
Q ss_pred CCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHH
Q 011480 77 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 156 (484)
Q Consensus 77 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 156 (484)
.+++.|+++++.++... ..+ .++|++|++++|.+..-. . .+++|++|++++|.++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~lp-----~~l--~~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP-----DCL--PAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCC-----SCC--CTTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCccC-----hhh--CCCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 46999999999876321 111 258999999999886421 1 358999999999998752 22
Q ss_pred HhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHH
Q 011480 157 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 236 (484)
Q Consensus 157 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~ 236 (484)
..++|++|++++|.+..- +. .+++|+.|++++|.++... ...++|++|++++|.+..-.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~--- 157 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLP--------VLPPGLQELSVSDNQLASLP--- 157 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCC---
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCC--------CCCCCCCEEECcCCcCCCcC---
Confidence 468899999999988642 11 4678999999999876422 13488999999999886521
Q ss_pred HHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCCh
Q 011480 237 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 316 (484)
Q Consensus 237 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 316 (484)
....+|+.|++++|.+.. ++ ..+++|+.|++++|.++. +.. ..++|+.|++++|.++.
T Consensus 158 ------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 158 ------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred ------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 123489999999999887 33 456889999999998875 111 24789999999999885
Q ss_pred hHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccC
Q 011480 317 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 396 (484)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n 396 (484)
. . ...++|+.|++++|.++... ...++|+.|++++|.++.... ..++|+.|++++|
T Consensus 216 l-----~---~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 L-----P---ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp C-----C---CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred c-----C---CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 2 1 12488999999999887532 345799999999999875322 3588999999999
Q ss_pred CCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCC-ccceeEeeccCCc
Q 011480 397 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE-DVAVTSLNLANNF 456 (484)
Q Consensus 397 ~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~-~~~L~~l~l~~n~ 456 (484)
.++... .. +.. .++|+.|++++|+++......+........ ...+..++++++.
T Consensus 272 ~L~~lp-~~----l~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~ 326 (622)
T 3g06_A 272 QLTRLP-ES----LIH-LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326 (622)
T ss_dssp CCCSCC-GG----GGG-SCTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC-
T ss_pred CCCcCC-HH----Hhh-ccccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCc
Confidence 988532 22 222 278999999999999888877776643211 1235556666543
No 69
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.71 E-value=2.3e-16 Score=133.42 Aligned_cols=133 Identities=15% Similarity=0.220 Sum_probs=71.1
Q ss_pred HHHHhhcCCCcCEEECCCC-CCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 322 IARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 322 l~~~l~~~~~L~~L~ls~n-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
+...+...++|++|+|+++ .|+++++..++..++.++.|+.|+|++|.+++.+...+++++..+++|+.|+|++|.|++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4444444455555555553 555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhcCccccEEEcCCC---CCChhHHHHHHHHHHhCCccceeEeeccCCcC
Q 011480 401 EGAKCLAQSFKVVNEALTSIDLAFN---EIRDDGAFAIAQALKANEDVAVTSLNLANNFL 457 (484)
Q Consensus 401 ~~~~~l~~~~~~~~~~L~~L~l~~n---~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i 457 (484)
.|...+++++. .|++|++|+|++| .+++.+...++++++.|++ |..|++..|.+
T Consensus 113 ~Ga~ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCCCCH
T ss_pred HHHHHHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccCCCc
Confidence 55555555544 2345555555432 4455555555555555554 55555555443
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=8.7e-19 Score=163.89 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=107.3
Q ss_pred CCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHh
Q 011480 107 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 186 (484)
Q Consensus 107 L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~ 186 (484)
++.+.+.++.+++..+..+...+.. ++|++|++++|.+.......+.. ..+++|++|++++|.+.......-...+.
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred eeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4444444444444333333332221 33555555554443321111100 23344555555555544321111112233
Q ss_pred cCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHH
Q 011480 187 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 266 (484)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 266 (484)
.+++|++|++++|.++.... ..+..+++|++|++++|.+........ .......++|++|++++|.++.... .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~--~ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSC----EQVRAFPALTSLDLSDNPGLGERGLMA-ALCPHKFPAIQNLALRNTGMETPTG--V 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCT----TSCCCCTTCCEEECCSCTTCHHHHHHT-TSCTTSSCCCCSCBCCSSCCCCHHH--H
T ss_pred hccCCCEEEeeCCCcchhhH----HHhccCCCCCEEECCCCCCccchhhhH-HHhhhcCCCCCEEECCCCCCCchHH--H
Confidence 45555555555555432211 223455566666666665543211000 0111122356666666666653111 1
Q ss_pred HH-HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhC---CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCC
Q 011480 267 AE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQN---RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 342 (484)
Q Consensus 267 ~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~---~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i 342 (484)
+. .+..+++|++|++++|.+++.. +..+..+ ++|++|++++|+++. +...+ .++|++|++++|.+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATV----NPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCccc----hhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcC
Confidence 11 2355666666666666665421 1112222 466677777766663 12222 25677777777766
Q ss_pred ChhHHHHHHHHHHhCCCcCEEeccCCCCCh
Q 011480 343 GADGAKALSEVLKFHGNINTLKLGWCQIGA 372 (484)
Q Consensus 343 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 372 (484)
+.... +...++|+.|++++|.+++
T Consensus 285 ~~~~~------~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 285 NRAPQ------PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCC------TTSCCCCSCEECSSTTTSC
T ss_pred CCCch------hhhCCCccEEECcCCCCCC
Confidence 54211 1334677777777776654
No 71
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.71 E-value=3.3e-16 Score=132.41 Aligned_cols=128 Identities=11% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHhCCCccEEEccCC-CCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHH
Q 011480 298 LKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 376 (484)
Q Consensus 298 l~~~~~L~~L~l~~~-~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~ 376 (484)
+...++|++|+|+++ +|.++|...+++++..+.+|+.|+|++|.|++.+...++..++.++.|++|+|++|.|++.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334445555555543 5555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCCccEEEeccC---CCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 377 FVADMLRYNNTISILDLRAN---GLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 377 ~l~~~l~~~~~L~~L~l~~n---~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
.+.+++..+++|++|+|++| .+++.|...++.++. .|++|++|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCC
Confidence 55555555555555555433 445555555555554 24555555555543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.5e-18 Score=162.39 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=49.8
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+..... .....+..+++|++|++++|.+++... ...+..+++|++|++++|.++. +...+
T Consensus 202 ~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~ 272 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQ-----VPKGL 272 (312)
T ss_dssp TCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSCCSS-----CCSSC
T ss_pred CCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCccCh-----hhhhc
Confidence 45555555555542110 011223344555555555555544210 0011123556666666665552 11122
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCCh
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 372 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 372 (484)
. ++|++|++++|.+++.. . +...++|++|++++|.+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~p-----~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRNP-----S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSCC-----C-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCCh-----h-HhhCCCCCEEeccCCCCCC
Confidence 1 45666666666555431 0 2334566666666665543
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=6.8e-19 Score=165.70 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=59.8
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+.. ++..+..+++|++|++++|.++. +...+..+++|++|++++|.+... +...+
T Consensus 184 ~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~ 249 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIF 249 (328)
T ss_dssp TCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCT
T ss_pred CCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHh
Confidence 45555555555542 33334555555555555555543 222244455555555555544432 22233
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCC
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 397 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 397 (484)
..+++|++|++++|.+...... .+..+++|++|++++|.+.+. ++..+...++|+.+++..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPL----DIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCT----TGGGCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEECCGGG
T ss_pred cCCCCCCEEECCCCCchhhcch----hhhcCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeCCHHH
Confidence 4445555555555543332211 123345555555555544332 22223334555555555443
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.8e-18 Score=161.77 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=47.7
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHH--hcCCCccEEEcCCCCCChHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGALGANALA 210 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~ 210 (484)
..++.+.+.++.++......+...+.. +.|++|++++|.+.... +..+ ..+++|++|++++|.++......-.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTM----PPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCC----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccch----hhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 346777777777766655555554332 45777777777664221 1112 3455666666666655431110000
Q ss_pred HHhhcCCCcCEEEccCCCCC
Q 011480 211 KGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~l~ 230 (484)
..+..+++|++|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSC
T ss_pred HHhhhccCCCEEEeeCCCcc
Confidence 12234555666666555553
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.3e-18 Score=158.63 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=20.1
Q ss_pred hcCCCCcEEEcCCCCCCcHHHHHHH-HHHHhCCCccEEEccCCCCCh
Q 011480 271 KNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNIHS 316 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~ 316 (484)
..+++|++|++++|.++... .+. ..+..+++|++|++++|.++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred ccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCc
Confidence 44455555555555554321 111 112234555555555555544
No 76
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=1.5e-19 Score=170.27 Aligned_cols=235 Identities=17% Similarity=0.122 Sum_probs=142.6
Q ss_pred CCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHH
Q 011480 132 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 211 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 211 (484)
...+++|+++++.++. ++..+..++.|++|++++|.+. .++..+..+++|+.|++++|.++. ++.
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLM-----ELPDTMQQFAGLETLTLARNPLRA-----LPA 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCC-----CCCSCGGGGTTCSEEEEESCCCCC-----CCG
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCcc-----chhHHHhccCCCCEEECCCCcccc-----CcH
Confidence 3567777777776653 2233344566777777776664 123344555666666666665541 233
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
.+..+++|++|++++|.+... ....+....+.+ .+..+++|++|++++|.++.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~-----------~p~~~~~~~~~~-------------~~~~l~~L~~L~L~~n~l~~--- 197 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTE-----------LPEPLASTDASG-------------EHQGLVNLQSLRLEWTGIRS--- 197 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCC-----------CCSCSEEEC-CC-------------CEEESTTCCEEEEEEECCCC---
T ss_pred HHhcCcCCCEEECCCCCCccc-----------cChhHhhccchh-------------hhccCCCCCEEECcCCCcCc---
Confidence 455566666666665543221 000122221111 13457889999999888873
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
++..+..+++|++|++++|.++. +...+..+++|++|++++|.+..... ..+..+++|++|++++|.+.
T Consensus 198 --lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 198 --LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp --CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTTCTTC
T ss_pred --chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCCCCch
Confidence 44456678889999999998875 33346777889999999887654422 22345678888888887765
Q ss_pred hhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 372 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 372 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
+.. +..+..+++|+.|++++|.+.......+... ++|+.+++..+.+.
T Consensus 267 ~~~----p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-----~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 267 LTL----PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-----PANCIILVPPHLQA 314 (328)
T ss_dssp CBC----CTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-----CTTCEEECCGGGSC
T ss_pred hhc----chhhhcCCCCCEEeCCCCCchhhccHHHhhc-----cCceEEeCCHHHHH
Confidence 432 2234556888888888887666544444332 66788887776544
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=6.3e-20 Score=171.47 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHH
Q 011480 301 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 380 (484)
Q Consensus 301 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 380 (484)
+++|++|++++|.++... +...+..+++|++|++++|.++..... .+...++|++|++++|.+++.....
T Consensus 149 l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~--- 218 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFP--- 218 (306)
T ss_dssp CTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGG---
T ss_pred CcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhh---
Confidence 444555555555443210 112233445555555555555443211 1223455566666655554432211
Q ss_pred HHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 381 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 381 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
+..+++|+.|++++|.+++.....+.. ..++|+.|++++|+++
T Consensus 219 -~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 219 -YKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp -GTTCTTCCEEECTTSCCCBCSSSSCCC----CCTTCCEEECTTCCEE
T ss_pred -ccCcccCCEeECCCCCCcccCHHHHHh----hhccCCEEEccCCCee
Confidence 233466666666666666543322211 1135777777777664
No 78
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=2.1e-19 Score=167.95 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=154.8
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhH--HHHHHHhhccCCCcceEEEccCCCCChhhHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 266 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 266 (484)
+++++|++++|.++.... ..+..+++|++|++++|.+...+ ...+. ...+|++|++++|.+.. +
T Consensus 28 ~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~~~L~~L~Ls~n~i~~-----l 93 (306)
T 2z66_A 28 SSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-----GTTSLKYLDLSFNGVIT-----M 93 (306)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHHH-----SCSCCCEEECCSCSEEE-----E
T ss_pred CCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCcccccc-----cccccCEEECCCCcccc-----C
Confidence 456666666655543221 22456667777777777665321 11111 12367777777776664 2
Q ss_pred HHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhH
Q 011480 267 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 346 (484)
Q Consensus 267 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~ 346 (484)
+..+..+++|++|++++|.+++... ...+..+++|++|++++|.++.. ....+..+++|++|++++|.+.+..
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGGE
T ss_pred hhhcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCcccccc
Confidence 3335567888888888887654211 12355678999999999988754 2334667799999999999876521
Q ss_pred HHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 347 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 347 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
. ...+...++|++|++++|.+++.... .+..+++|+.|++++|.+++.....+.. .++|+.|++++|+
T Consensus 167 ~---~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~ 234 (306)
T 2z66_A 167 L---PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKC-----LNSLQVLDYSLNH 234 (306)
T ss_dssp E---CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTT-----CTTCCEEECTTSC
T ss_pred c---hhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccC-----cccCCEeECCCCC
Confidence 1 12334568999999999999875433 3455699999999999998764433322 2789999999999
Q ss_pred CChhHHHHHHHHHHhCCccceeEeeccCCcCch
Q 011480 427 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 427 i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
++......+. ..+ ..|++|++++|.++.
T Consensus 235 l~~~~~~~~~----~~~-~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 235 IMTSKKQELQ----HFP-SSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCBCSSSSCC----CCC-TTCCEEECTTCCEEC
T ss_pred CcccCHHHHH----hhh-ccCCEEEccCCCeec
Confidence 9875443332 222 159999999999865
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.8e-17 Score=164.57 Aligned_cols=216 Identities=25% Similarity=0.260 Sum_probs=99.8
Q ss_pred CCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHH
Q 011480 105 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 184 (484)
Q Consensus 105 ~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 184 (484)
++|++|+|++|.+..... ..+..+++|++|++++|.+++... +..+++|++|++++|.++.-
T Consensus 34 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l-------- 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL-------- 95 (487)
T ss_dssp GGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEE--------
T ss_pred CCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCC--------
Confidence 356666666666554211 223344666666666666554211 34455666666666655321
Q ss_pred HhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHH
Q 011480 185 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 264 (484)
Q Consensus 185 l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 264 (484)
...++|+.|++++|.++.... ..+++|+.|++++|.+.+.....+ ...++|++|++++|.+++..
T Consensus 96 -~~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~-- 160 (487)
T 3oja_A 96 -LVGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTVN-- 160 (487)
T ss_dssp -EECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEEE--
T ss_pred -CCCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCcC--
Confidence 123556666666555543221 123455555555555544211111 11224555555555555431
Q ss_pred HHHHHHh-cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 265 HVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 265 ~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
+..+. .+++|+.|++++|.+++. . ....+++|++|++++|.++... ..+..+++|+.|++++|.++
T Consensus 161 --~~~l~~~l~~L~~L~Ls~N~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 161 --FAELAASSDTLEHLNLQYNFIYDV-----K-GQVVFAKLKTLDLSSNKLAFMG-----PEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp --GGGGGGGTTTCCEEECTTSCCCEE-----E-CCCCCTTCCEEECCSSCCCEEC-----GGGGGGTTCSEEECTTSCCC
T ss_pred --hHHHhhhCCcccEEecCCCccccc-----c-ccccCCCCCEEECCCCCCCCCC-----HhHcCCCCccEEEecCCcCc
Confidence 11122 345555555555555442 0 0112445555555555555321 12333455555555555544
Q ss_pred hhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 344 ADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 344 ~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
.. ...+..+++|+.|++++|.+.
T Consensus 228 ~l-----p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 LI-----EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-----CTTCCCCTTCCEEECTTCCBC
T ss_pred cc-----chhhccCCCCCEEEcCCCCCc
Confidence 21 111223345555555555544
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=5.5e-18 Score=156.55 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=65.8
Q ss_pred hcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHH
Q 011480 271 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 350 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l 350 (484)
..+++|++|++++|.++.. ....+..+++|++|++++|.++... ...+..+++|++|++++|.++.....
T Consensus 102 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~-- 171 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSVPER-- 171 (285)
T ss_dssp TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEECTT--
T ss_pred cCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCcccccCHH--
Confidence 3445555555555544432 1122333455555555555554321 11233445566666665555432211
Q ss_pred HHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 351 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 351 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
.+..+++|++|++++|.+++.... .+..+++|+.|++++|.+++.....+... ++|+.|++++|++.
T Consensus 172 --~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 --AFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYLRLNDNPWV 238 (285)
T ss_dssp --TTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEEECCSSCEE
T ss_pred --HhcCccccCEEECCCCcccccCHh----HccCcccccEeeCCCCcCCcCCHHHcccC-----cccCEEeccCCCcc
Confidence 122345566666666655543222 23334666666666666665443333221 55666666666653
No 81
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=2.3e-18 Score=169.27 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
++++.|++++|.+..... ..+..+++|++|++++|.+.... ...+..+++|+.|++++|.++.... ..
T Consensus 64 ~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIE----IGAFNGLANLNTLELFDNRLTTIPN----GA 131 (440)
T ss_dssp TTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEEC----GGGGTTCSSCCEEECCSSCCSSCCT----TT
T ss_pred CCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccC----hhhccCCccCCEEECCCCcCCeeCH----hH
Confidence 567777777777665322 22345567777777777765321 2344556677777777766653221 23
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCC-CChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
+..+++|++|++++|.+.......+ ...++|++|++++|. +... -...+..+++|+.|++++|.+++.
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i----~~~~~~~l~~L~~L~L~~n~l~~~-- 200 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGELKRLSYI----SEGAFEGLSNLRYLNLAMCNLREI-- 200 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTT-----TTCTTCCEEECCCCTTCCEE----CTTTTTTCSSCCEEECTTSCCSSC--
T ss_pred hhccccCceeeCCCCcccccCHHHh-----hhCcccCEeCCCCCCCccee----CcchhhcccccCeecCCCCcCccc--
Confidence 4556667777777666553211111 222356666666632 2221 011244555666666666655531
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
. .+..+++|++|++++|.++... ...+..+++|+.|++++|.++..... .+..+++|+.|++++|.++
T Consensus 201 ---~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 201 ---P-NLTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ---C-CCTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECTT----SSTTCTTCCEEECTTSCCC
T ss_pred ---c-ccCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCCCceeEEChh----hhcCCCCCCEEECCCCCCC
Confidence 1 1334456666666666555431 12344445666666666655443221 1223455555555555554
Q ss_pred hhHHHHHHHHHHcCCCccEEEeccCCC
Q 011480 372 ASGAEFVADMLRYNNTISILDLRANGL 398 (484)
Q Consensus 372 ~~~~~~l~~~l~~~~~L~~L~l~~n~i 398 (484)
..... .+..+++|+.|++++|.+
T Consensus 269 ~~~~~----~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 269 LLPHD----LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCTT----TTSSCTTCCEEECCSSCE
T ss_pred ccChh----HhccccCCCEEEcCCCCc
Confidence 33222 122335555555555544
No 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=2.9e-18 Score=169.12 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
+++++|++++|.++.... ..+..+++|++|++++|.+.... ...+..+++|+.|++++|.++.... ..
T Consensus 75 ~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIE----VGAFNGLASLNTLELFDNWLTVIPS----GA 142 (452)
T ss_dssp TTCSEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSBCCT----TT
T ss_pred CCccEEECcCCcCceECH----HHcCCCCCCCEEECCCCccCCcC----hhhccCcccCCEEECCCCcCCccCh----hh
Confidence 456666666666654321 22334466666666666654221 2234445556666665555443221 22
Q ss_pred hhcCCCcCEEEccCCCCC
Q 011480 213 LEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~ 230 (484)
+..+++|++|++++|.+.
T Consensus 143 ~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp SSSCTTCCEEECCSCCCC
T ss_pred hcccCCCCEEECCCCCcc
Confidence 334555555555555544
No 83
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=3.2e-18 Score=168.28 Aligned_cols=259 Identities=17% Similarity=0.128 Sum_probs=183.3
Q ss_pred cCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhh
Q 011480 135 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 214 (484)
Q Consensus 135 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~ 214 (484)
...++.++..++.. +..+ .+.++.|++++|.+.... ...+..+++|+.|++++|.++.... ..+.
T Consensus 45 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAFN 109 (440)
T ss_dssp SCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGGT
T ss_pred CCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhcc
Confidence 45666666665542 2211 267999999999986432 3456778999999999998875433 4567
Q ss_pred cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHH
Q 011480 215 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 293 (484)
Q Consensus 215 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~ 293 (484)
.+++|++|++++|.+....... + ...++|++|++++|.+... ....+..+++|++|++++| .++...
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~--- 177 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGA----F-VYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYIS--- 177 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTT----S-CSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC---
T ss_pred CCccCCEEECCCCcCCeeCHhH----h-hccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCcceeC---
Confidence 8899999999999886532111 1 3345899999999998864 2234678899999999985 444321
Q ss_pred HHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChh
Q 011480 294 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 373 (484)
Q Consensus 294 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~ 373 (484)
...+..+++|++|++++|.++... .+..+++|++|++++|.++..... .+..+++|++|++++|.++..
T Consensus 178 -~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 178 -EGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp -TTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEE
T ss_pred -cchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccChh----hhccCccCCEEECCCCceeEE
Confidence 113556789999999999988532 366779999999999988765332 334568999999999998875
Q ss_pred HHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC-hhHHHHHHHHHH
Q 011480 374 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK 440 (484)
Q Consensus 374 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~l~ 440 (484)
.... +..+++|+.|+|++|.++......+.. .++|+.|++++|.+. +-....+..-++
T Consensus 247 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 247 ERNA----FDNLQSLVEINLAHNNLTLLPHDLFTP-----LHHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CTTS----STTCTTCCEEECTTSCCCCCCTTTTSS-----CTTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred Chhh----hcCCCCCCEEECCCCCCCccChhHhcc-----ccCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 4433 445689999999999988754433322 278999999999864 334445544443
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.6e-17 Score=164.78 Aligned_cols=218 Identities=22% Similarity=0.241 Sum_probs=108.7
Q ss_pred HcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHH
Q 011480 47 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 126 (484)
Q Consensus 47 ~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~ 126 (484)
..++|++|+|++|.+.... +..+..+++|+.|++++|.++.... +..+++|++|++++|.++...
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE-----
T ss_pred cCCCccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC-----
Confidence 4457777777777776532 2344566777777777777653221 445566777777776654321
Q ss_pred HHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHH
Q 011480 127 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 206 (484)
Q Consensus 127 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 206 (484)
..++|++|++++|.++.... ..++.|+.|++++|.++.. .+..+..+++|+.|++++|.++....
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCcCh
Confidence 12566666666666654321 1235566666666665431 12233345556666666555543221
Q ss_pred HHHHHHh-hcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCC
Q 011480 207 NALAKGL-EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 285 (484)
Q Consensus 207 ~~l~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~ 285 (484)
..+ ..+++|+.|++++|.+.+.. .. ...++|++|++++|.++.. +..+..+++|+.|++++|.
T Consensus 162 ----~~l~~~l~~L~~L~Ls~N~l~~~~------~~-~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 162 ----AELAASSDTLEHLNLQYNFIYDVK------GQ-VVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ----GGGGGGTTTCCEEECTTSCCCEEE------CC-CCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTTSC
T ss_pred ----HHHhhhCCcccEEecCCCcccccc------cc-ccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecCCc
Confidence 112 13455555555555554320 00 0122455555555554441 1123344445555555544
Q ss_pred CCcHHHHHHHHHHHhCCCccEEEccCCCCC
Q 011480 286 IGDEGAEKIADALKQNRTITTIDLGGNNIH 315 (484)
Q Consensus 286 l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 315 (484)
++. ++..+..+++|+.|++++|.+.
T Consensus 226 l~~-----lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVL-----IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCE-----ECTTCCCCTTCCEEECTTCCBC
T ss_pred Ccc-----cchhhccCCCCCEEEcCCCCCc
Confidence 443 1222233344444444444444
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=4.8e-18 Score=156.90 Aligned_cols=207 Identities=18% Similarity=0.167 Sum_probs=148.7
Q ss_pred CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCC-CCcHHHHHHH
Q 011480 217 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIA 295 (484)
Q Consensus 217 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~ 295 (484)
++|++|+++++.+.......+ ...++|++|++++|.+... .+..+..+++|++|++++|. ++... .
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~l~~~~----~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-----RACRNLTILWLHSNVLARI----DAAAFTGLALLEQLDLSDNAQLRSVD----P 98 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-----TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSCTTCCCCC----T
T ss_pred CCceEEEeeCCcCCccCHHHc-----ccCCCCCEEECCCCcccee----CHhhcCCccCCCEEeCCCCCCccccC----H
Confidence 467777777776655321111 2234678888888777663 23346678889999999986 66531 2
Q ss_pred HHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHH
Q 011480 296 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 375 (484)
Q Consensus 296 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 375 (484)
..+..+++|++|++++|.++... ...+..+++|++|++++|.++..... .+..+++|++|++++|.++....
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELG----PGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCEECT
T ss_pred HHhcCCcCCCEEECCCCcCCEEC----HhHhhCCcCCCEEECCCCcccccCHh----HhccCCCccEEECCCCcccccCH
Confidence 34556799999999999988642 34466789999999999988754322 23456899999999999886543
Q ss_pred HHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCC
Q 011480 376 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 455 (484)
Q Consensus 376 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n 455 (484)
. .+..+++|+.|++++|.+++.....+... ++|+.|++++|+++......+. ..+ .|++|++++|
T Consensus 171 ~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~----~l~--~L~~L~l~~N 235 (285)
T 1ozn_A 171 R----AFRGLHSLDRLLLHQNRVAHVHPHAFRDL-----GRLMTLYLFANNLSALPTEALA----PLR--ALQYLRLNDN 235 (285)
T ss_dssp T----TTTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCHHHHT----TCT--TCCEEECCSS
T ss_pred H----HhcCccccCEEECCCCcccccCHhHccCc-----ccccEeeCCCCcCCcCCHHHcc----cCc--ccCEEeccCC
Confidence 3 34556999999999999988755444332 7899999999999876554443 344 4999999999
Q ss_pred cCch
Q 011480 456 FLTK 459 (484)
Q Consensus 456 ~i~~ 459 (484)
.+.-
T Consensus 236 ~~~c 239 (285)
T 1ozn_A 236 PWVC 239 (285)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8764
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=2.8e-18 Score=169.34 Aligned_cols=258 Identities=18% Similarity=0.119 Sum_probs=181.7
Q ss_pred cCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhh
Q 011480 135 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 214 (484)
Q Consensus 135 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~ 214 (484)
...++.++..++.. +..+ .+.+++|++++|.+.... +..+..+++|+.|++++|.++.... ..+.
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCcc-----CCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 45677766665542 1111 257999999999986432 3456778999999999998875432 4467
Q ss_pred cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC-CCCcHHHHH
Q 011480 215 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 293 (484)
Q Consensus 215 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~ 293 (484)
.+++|++|++++|.+....... + ...++|++|++++|.+... ....+..+++|+.|++++| .++...
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~--- 188 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGA----F-EYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS--- 188 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTT----S-SSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC---
T ss_pred CcccCCEEECCCCcCCccChhh----h-cccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC---
Confidence 8899999999999887532111 1 2345899999999998863 2234678899999999985 454321
Q ss_pred HHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChh
Q 011480 294 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 373 (484)
Q Consensus 294 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~ 373 (484)
...+..+++|++|++++|.++.. ..+..+++|++|++++|.++..... .+..+++|+.|++++|.++..
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEE
T ss_pred -hhhccCCCCCCEEECCCCccccc------ccccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceE
Confidence 11355678999999999998863 1366779999999999998765432 345568999999999998775
Q ss_pred HHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC-hhHHHHHHHHH
Q 011480 374 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQAL 439 (484)
Q Consensus 374 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~l 439 (484)
.... +..+++|+.|++++|.++......+.. .++|+.|++++|.+. +-....+..-+
T Consensus 258 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~Np~~CdC~~~~l~~~l 315 (452)
T 3zyi_A 258 ERNA----FDGLASLVELNLAHNNLSSLPHDLFTP-----LRYLVELHLHHNPWNCDCDILWLAWWL 315 (452)
T ss_dssp CTTT----TTTCTTCCEEECCSSCCSCCCTTSSTT-----CTTCCEEECCSSCEECSTTTHHHHHHH
T ss_pred CHHH----hcCCCCCCEEECCCCcCCccChHHhcc-----ccCCCEEEccCCCcCCCCCchHHHHHH
Confidence 4433 455689999999999988654332222 267999999999854 33344444433
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=3.6e-16 Score=145.75 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=68.2
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+... + .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++... +
T Consensus 108 ~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~------l 169 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS-----P-LAGLTNLQYLSIGNAQVSDLTP------L 169 (308)
T ss_dssp TCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCGG------G
T ss_pred CCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc-----c-ccCCCCccEEEccCCcCCCChh------h
Confidence 455555555555442 1 1445556666666666555421 1 4445666666666666654211 4
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
..+++|+.|++++|.+++... +..+++|++|++++|.+++... +..+++|+.|++++|.++.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence 455666666666666654321 3445666666666666655431 3455677777777766654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2.9e-16 Score=146.39 Aligned_cols=191 Identities=20% Similarity=0.204 Sum_probs=122.7
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
++|++|+++++.++... .+..+++|++|++++|.+.+... + ...++|++|++++|.+... .
T Consensus 41 ~~L~~L~l~~~~i~~l~------~~~~l~~L~~L~L~~n~i~~~~~------~-~~l~~L~~L~L~~n~l~~~-----~- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE------GVQYLNNLIGLELKDNQITDLAP------L-KNLTKITELELSGNPLKNV-----S- 101 (308)
T ss_dssp HTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------G-TTCCSCCEEECCSCCCSCC-----G-
T ss_pred CCcCEEEeeCCCccCch------hhhccCCCCEEEccCCcCCCChh------H-ccCCCCCEEEccCCcCCCc-----h-
Confidence 45556666555544321 24456667777777666654221 1 2233677777777766653 1
Q ss_pred HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH
Q 011480 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 348 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~ 348 (484)
.+..+++|++|++++|.+++. . .+..+++|++|++++|.++.... +..+++|++|++++|.+++...
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG-
T ss_pred hhcCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCChh-
Confidence 356677888888888877763 1 25567788888888888776422 5666888888888887765332
Q ss_pred HHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 349 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 349 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
+..+++|++|++++|.+++... +..+++|+.|++++|.+++... + . ..++|+.|++++|+++
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~--l----~-~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP--L----A-NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG--G----T-TCTTCCEEEEEEEEEE
T ss_pred -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc--c----c-CCCCCCEEEccCCeee
Confidence 4556788888888887765432 4566788888888887776542 2 1 1267888888887765
Q ss_pred h
Q 011480 429 D 429 (484)
Q Consensus 429 ~ 429 (484)
.
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 4
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=8.9e-17 Score=147.63 Aligned_cols=210 Identities=18% Similarity=0.114 Sum_probs=121.7
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
+++++|++++|.++.... ..+..+++|++|++++|.+.......+ ...++|++|++++|.+... .+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLSTLILTGNPIQSL----ALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTTTT-----TTCTTCCEEECTTCCCCEE----CTT
T ss_pred CCccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHHHc-----cCCcCCCEEECCCCccCcc----Chh
Confidence 468888888887765432 245667788888888887764321111 2234678888888777663 223
Q ss_pred HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH
Q 011480 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 348 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~ 348 (484)
.+..+++|++|++++|.+..... ..+..+++|++|++++|.++... +...+..+++|++|++++|.++.....
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhcCCccccEEECCCCCccccCc----hhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence 45667777888877776654211 12445677777777777766422 223455667777777777776654322
Q ss_pred HHHHHHHhCCCcC-EEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCC
Q 011480 349 ALSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 427 (484)
Q Consensus 349 ~l~~~~~~~~~L~-~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 427 (484)
.+.. +...+.+. +|++++|.++......+ ...+|+.|++++|.++......+.. .++|+.|++++|++
T Consensus 168 ~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 168 DLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIFDR-----LTSLQKIWLHTNPW 236 (276)
T ss_dssp GGHH-HHTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTTTT-----CCSCCEEECCSSCB
T ss_pred Hhhh-hhhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHhcc-----cccccEEEccCCcc
Confidence 2222 12223333 67777777664322211 2246777777777766543222211 25677777777766
Q ss_pred Ch
Q 011480 428 RD 429 (484)
Q Consensus 428 ~~ 429 (484)
+.
T Consensus 237 ~c 238 (276)
T 2z62_A 237 DC 238 (276)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=1.2e-16 Score=146.70 Aligned_cols=210 Identities=19% Similarity=0.168 Sum_probs=108.7
Q ss_pred CCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh
Q 011480 161 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
+.|++|++++|.+.... ...+..+++|+.|++++|.++.... ..+..+++|++|++++|.+.......+
T Consensus 28 ~~l~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAF--- 96 (276)
T ss_dssp TTCCEEECTTCCCCEEC----TTTTTTCTTCSEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTT---
T ss_pred CCccEEECCCCcccccC----HhHhccccCCcEEECCCCcCCccCH----HHccCCcCCCEEECCCCccCccChhhh---
Confidence 34667777766665322 1234456667777776666553221 234556667777777666654321111
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHH
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 320 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 320 (484)
...++|++|++++|.+.... ...+..+++|++|++++|.+++.. ++..+..+++|++|++++|+++.....
T Consensus 97 --~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 97 --SGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp --TTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred --cCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence 12236667777666665521 112455666677777666665411 122344556677777777666653222
Q ss_pred HHHHHhhcCCCcC-EEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 321 AIARVLKDNSVIT-SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 321 ~l~~~l~~~~~L~-~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
.+.. +...+.|. +|++++|.++...... ....+|+.|++++|.++.... ..+..+++|+.|++++|.++
T Consensus 168 ~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRV-LHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHH-HHTCTTCCEEEECCSSCCCEECTTS-----SCSCCEEEEECCSSCCSCCCT----TTTTTCCSCCEEECCSSCBC
T ss_pred Hhhh-hhhccccceeeecCCCcccccCccc-----cCCCcccEEECCCCceeecCH----hHhcccccccEEEccCCccc
Confidence 2222 12223333 6666666665432111 112366677777666654322 22334566677777766665
Q ss_pred c
Q 011480 400 D 400 (484)
Q Consensus 400 ~ 400 (484)
.
T Consensus 238 c 238 (276)
T 2z62_A 238 C 238 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=2e-15 Score=138.11 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=7.0
Q ss_pred CCCcCEEECCCCCCC
Q 011480 329 NSVITSLDLAYNPIG 343 (484)
Q Consensus 329 ~~~L~~L~ls~n~i~ 343 (484)
+++|++|++++|.+.
T Consensus 180 l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CccCCEEECCCCcCC
Confidence 344444444444443
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=2.1e-15 Score=137.97 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=107.5
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
++|++|+++++.+.... .+..+++|++|++++|.+..- ..+..+++|++|++++|.++.... ..
T Consensus 41 ~~L~~L~l~~~~i~~~~------~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~l~~~~~----~~ 104 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ------GIQYLPNVRYLALGGNKLHDI------SALKELTNLTYLILTGNQLQSLPN----GV 104 (272)
T ss_dssp TTCCEEECTTSCCCCCT------TGGGCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECTTSCCCCCCT----TT
T ss_pred cceeeeeeCCCCccccc------ccccCCCCcEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCccCh----hH
Confidence 55666666666554321 134456666666666665431 134556666666666666553221 22
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 292 (484)
+..+++|++|++++|.+....... + ...++|++|++++|.+... .+..+..+++|+.|++++|.+++..
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 173 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGV----F-DKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLP-- 173 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTT----T-TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred hcCCcCCCEEECCCCcCCccCHHH----h-ccCCCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccC--
Confidence 456677777777777665421111 1 2233678888888777653 2223466788888888888776531
Q ss_pred HHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 293 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
...+..+++|++|++++|.++... ...+..+++|++|++++|++.
T Consensus 174 --~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 174 --EGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp --TTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBC
T ss_pred --HHHhcCCccCCEEECCCCcCCccC----HHHHhCCcCCCEEEccCCCcc
Confidence 122456788889999888887632 233566788888888888765
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.3e-14 Score=134.05 Aligned_cols=170 Identities=22% Similarity=0.210 Sum_probs=97.6
Q ss_pred CCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHH
Q 011480 216 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA 295 (484)
Q Consensus 216 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 295 (484)
+++|+.|+++++.+.... . +. ..++|++|++++|.+.+. .. +..+++|+.|++++|.+++. .
T Consensus 45 l~~L~~L~l~~~~i~~~~--~----~~-~l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~-----~ 106 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--G----IQ-YLPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL-----S 106 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--T----GG-GCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG-----G
T ss_pred cCcccEEEccCCCcccCh--h----Hh-cCCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC-----h
Confidence 456777777777665421 1 11 223677777777766653 11 55666777777777766652 1
Q ss_pred HHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHH
Q 011480 296 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 375 (484)
Q Consensus 296 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 375 (484)
.+..+++|++|++++|+++.. ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++...
T Consensus 107 -~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp -GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred -hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh
Confidence 244566677777777766652 2345566677777777666543 233455666666666666655322
Q ss_pred HHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 376 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 376 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
+..+++|+.|++++|.+++.. .+ .. .++|+.|++++|++++
T Consensus 174 ------l~~l~~L~~L~L~~N~i~~l~--~l----~~-l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 ------LAGLTKLQNLYLSKNHISDLR--AL----AG-LKNLDVLELFSQECLN 214 (291)
T ss_dssp ------GTTCTTCCEEECCSSCCCBCG--GG----TT-CTTCSEEEEEEEEEEC
T ss_pred ------hcCCCccCEEECCCCcCCCCh--hh----cc-CCCCCEEECcCCcccC
Confidence 444566666666666666532 11 11 2556666666666554
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=3.3e-16 Score=144.51 Aligned_cols=218 Identities=17% Similarity=0.076 Sum_probs=152.5
Q ss_pred hcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHH
Q 011480 186 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 265 (484)
Q Consensus 186 ~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 265 (484)
..++++++++++++.++... .. -.+.++.|++++|.+.......+ ...++|++|++++|.++....
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip-----~~--~~~~l~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALP-----PD--LPKDTTILHLSENLLYTFSLATL-----MPYTRLTQLNLDRAELTKLQV-- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCC-----SC--CCTTCCEEECTTSCCSEEEGGGG-----TTCTTCCEEECTTSCCCEEEC--
T ss_pred cccCCccEEECCCCCCCcCC-----CC--CCCCCCEEEcCCCcCCccCHHHh-----hcCCCCCEEECCCCccCcccC--
Confidence 45678999999988876432 11 13689999999998876432222 234589999999998887321
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChh
Q 011480 266 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 345 (484)
Q Consensus 266 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~ 345 (484)
...+++|+.|++++|.++. ++..+..+++|++|++++|+++... ...+..+++|++|++++|.++..
T Consensus 73 ----~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 73 ----DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ----CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCC
T ss_pred ----CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCcc
Confidence 2567889999999998874 3334556789999999999988632 23466679999999999988753
Q ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCC
Q 011480 346 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 425 (484)
Q Consensus 346 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n 425 (484)
.. ..+...++|+.|++++|.++..... .+...++|+.|++++|.++..... +. ...+|+.+++++|
T Consensus 140 ~~----~~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~ip~~-----~~-~~~~L~~l~L~~N 205 (290)
T 1p9a_G 140 PP----GLLTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLYTIPKG-----FF-GSHLLPFAFLHGN 205 (290)
T ss_dssp CT----TTTTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCCCCCTT-----TT-TTCCCSEEECCSC
T ss_pred Ch----hhcccccCCCEEECCCCcCCccCHH----HhcCcCCCCEEECCCCcCCccChh-----hc-ccccCCeEEeCCC
Confidence 22 2234568999999999998754332 334568999999999988753221 11 1267999999999
Q ss_pred CCC-hhHHHHHHHHHHhCCc
Q 011480 426 EIR-DDGAFAIAQALKANED 444 (484)
Q Consensus 426 ~i~-~~~~~~l~~~l~~~~~ 444 (484)
.+. +-.+..+..-++.++.
T Consensus 206 p~~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 206 PWLCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp CBCCSGGGHHHHHHHHHTGG
T ss_pred CccCcCccHHHHHHHHhCcc
Confidence 875 3455566666665553
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.3e-15 Score=140.54 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=95.6
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHH
Q 011480 190 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 269 (484)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 269 (484)
.++.|++++|.++.... ..+..+++|++|++++|.+...... ...++|++|++++|.+.. ++..
T Consensus 32 ~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-------~~l~~L~~L~Ls~N~l~~-----l~~~ 95 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQVD-------GTLPVLGTLDLSHNQLQS-----LPLL 95 (290)
T ss_dssp TCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEECC-------SCCTTCCEEECCSSCCSS-----CCCC
T ss_pred CCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCcccCC-------CCCCcCCEEECCCCcCCc-----Cchh
Confidence 44455555444433211 2234455555555555554432110 122356666666665553 2333
Q ss_pred HhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHH
Q 011480 270 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 349 (484)
Q Consensus 270 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~ 349 (484)
+..+++|+.|++++|.++... ...+..+++|++|++++|+++... ...+..+++|+.|++++|.++....
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~-- 165 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELPA-- 165 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCCT--
T ss_pred hccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEECCCCcCCccCH--
Confidence 445566666666666655421 122444566666666666665421 1223445667777777766653221
Q ss_pred HHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC-chhHHHHHHHHH
Q 011480 350 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR-DEGAKCLAQSFK 411 (484)
Q Consensus 350 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~ 411 (484)
..+...++|++|++++|.++.. +..+..+++|+.+++++|.+. +.....+...++
T Consensus 166 --~~~~~l~~L~~L~L~~N~l~~i-----p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 166 --GLLNGLENLDTLLLQENSLYTI-----PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp --TTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred --HHhcCcCCCCEEECCCCcCCcc-----ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 1123346677777777766532 222334466777777777654 334444444443
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.2e-16 Score=142.56 Aligned_cols=203 Identities=19% Similarity=0.171 Sum_probs=136.0
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHH
Q 011480 190 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 269 (484)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 269 (484)
..+.++++++.++... .. -.+.+++|++++|.+...... .+ ...++|++|++++|.+... ....
T Consensus 17 ~~~~l~~~~~~l~~ip-----~~--~~~~l~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~l~~n~l~~i----~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-----SN--IPADTKKLDLQSNKLSSLPSK----AF-HRLTKLRLLYLNDNKLQTL----PAGI 80 (270)
T ss_dssp TTTEEECTTSCCSSCC-----SC--CCTTCSEEECCSSCCSCCCTT----SS-SSCTTCCEEECCSSCCSCC----CTTT
T ss_pred CCCEEEccCCCCCccC-----CC--CCCCCCEEECcCCCCCeeCHH----Hh-cCCCCCCEEECCCCccCee----Chhh
Confidence 5778888888776422 11 125789999999887653211 11 2334889999999887753 1223
Q ss_pred HhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHH
Q 011480 270 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 349 (484)
Q Consensus 270 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~ 349 (484)
+..+++|++|++++|.++... ...+..+++|++|++++|.++... ...+..+++|++|++++|.+......
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~- 151 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSLPKG- 151 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred hcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCccCHh-
Confidence 466788999999988876531 123456788999999998887642 23356678999999999887654321
Q ss_pred HHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 350 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 350 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
.+..+++|++|++++|.++...... +..+++|+.|++++|.++......+.. .++|+.|++++|.+..
T Consensus 152 ---~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 152 ---VFDKLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPEGAFDS-----LEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---TTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTT-----CTTCCEEECCSSCBCC
T ss_pred ---HccCCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCHHHhcc-----ccCCCEEEecCCCeeC
Confidence 2345688999999988877643322 345588999999998887654332221 2678899999887643
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=1e-15 Score=140.02 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=89.3
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 292 (484)
+..+++|++|++++|.+.... .......++|++|++++|.+... ....+..+++|++|++++|.++...
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 125 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLP-----AGIFKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLP-- 125 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCC-----TTTTSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCC--
T ss_pred hcCCCCCCEEECCCCccCeeC-----hhhhcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeC--
Confidence 344555555555555543211 01111223566666666555542 1122345666777777666665421
Q ss_pred HHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCCh
Q 011480 293 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 372 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 372 (484)
...+..+++|++|++++|.++.... ..+..+++|++|++++|.++..... .+..+++|++|++++|.++.
T Consensus 126 --~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 126 --PRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCSC
T ss_pred --HHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCcCCc
Confidence 1223456677777777777664321 2245567777777777766543221 22345677888888777765
Q ss_pred hHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 373 SGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 373 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
.... .+..+++|+.|++++|.+..
T Consensus 196 ~~~~----~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 196 VPEG----AFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTT----TTTTCTTCCEEECCSSCBCC
T ss_pred CCHH----HhccccCCCEEEecCCCeeC
Confidence 3322 23445788888888887643
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=4.6e-14 Score=130.27 Aligned_cols=152 Identities=22% Similarity=0.231 Sum_probs=88.7
Q ss_pred hcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHH
Q 011480 214 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 293 (484)
Q Consensus 214 ~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~ 293 (484)
..+++|++|++++|.+.+... + ...++|++|++++|.+... + .+..+++|++|++++|.+++.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~------l-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~L~~n~i~~~---- 127 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP------L-ANLKNLGWLFLDENKVKDL-----S-SLKDLKKLKSLSLEHNGISDI---- 127 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG------G-TTCTTCCEEECCSSCCCCG-----G-GGTTCTTCCEEECTTSCCCCC----
T ss_pred hcCCCCCEEEccCCccCCCcc------c-ccCCCCCEEECCCCcCCCC-----h-hhccCCCCCEEECCCCcCCCC----
Confidence 344555555555555443211 1 1223555555555555542 1 245566666777766666552
Q ss_pred HHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChh
Q 011480 294 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 373 (484)
Q Consensus 294 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~ 373 (484)
..+..+++|++|++++|+++.. ..+..+++|++|++++|.+++... +..+++|++|++++|.+++.
T Consensus 128 --~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 128 --NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp --GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC
T ss_pred --hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCC
Confidence 2344566777777777766653 245566777777777777665432 34567777777777777653
Q ss_pred HHHHHHHHHHcCCCccEEEeccCCCCchh
Q 011480 374 GAEFVADMLRYNNTISILDLRANGLRDEG 402 (484)
Q Consensus 374 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 402 (484)
. .+..+++|+.|++++|.+++.+
T Consensus 194 ~------~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 194 R------ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G------GGTTCTTCSEEEEEEEEEECCC
T ss_pred h------hhccCCCCCEEECcCCcccCCc
Confidence 1 2455677888888887776543
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=3.7e-15 Score=134.66 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=117.6
Q ss_pred CcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHH
Q 011480 218 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 297 (484)
Q Consensus 218 ~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 297 (484)
..++++++++.+..- ...+ ...++.|++++|.+... .+..+..+++|++|++++|.+++. ....
T Consensus 15 ~~~~l~~~~~~l~~~-----p~~~---~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-----PSGI---PADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGV 78 (251)
T ss_dssp GGTEEECTTCCCSSC-----CSCC---CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTT
T ss_pred CCeEEecCCCCcccc-----CCCC---CCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhH
Confidence 455666666655431 1111 12577777777776653 222355677777888777777653 1223
Q ss_pred HHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHH
Q 011480 298 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 377 (484)
Q Consensus 298 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~ 377 (484)
+..+++|++|++++|.++... ...+..+++|++|++++|.++.... ..+...++|++|++++|.++.....
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~- 149 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLP----LGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAG- 149 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred hccCCcCCEEECCCCcccccC----hhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHH-
Confidence 455677888888888776532 2334556788888888887764322 1123457888888888887654332
Q ss_pred HHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh--HHHHHHHHHHhCC
Q 011480 378 VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALKANE 443 (484)
Q Consensus 378 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~ 443 (484)
.+..+++|+.|++++|.++......+.. .++|+.|++++|+++.. .+..+...+....
T Consensus 150 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~ 209 (251)
T 3m19_A 150 ---AFDKLTNLQTLSLSTNQLQSVPHGAFDR-----LGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209 (251)
T ss_dssp ---TTTTCTTCCEEECCSSCCSCCCTTTTTT-----CTTCCEEECCSCCBCTTSTTHHHHHHHHHHSG
T ss_pred ---HcCcCcCCCEEECCCCcCCccCHHHHhC-----CCCCCEEEeeCCceeCCccccHHHHHHHHhcc
Confidence 2444588888888888887654332222 26788888888887653 4455555554443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=4.4e-14 Score=122.48 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=47.8
Q ss_pred HhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHH
Q 011480 270 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 349 (484)
Q Consensus 270 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~ 349 (484)
+..+++|++|++++|.+++. ..+..+++|++|++++|.++.... ..+..+++|++|++++|.+++..+..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred HhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCccCcHhHHH
Confidence 33444455555544444331 123334455555555554443221 12333455555555555544433222
Q ss_pred HHHHHHhCCCcCEEeccCCC-CChhHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 350 LSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 350 l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
+ ..+++|++|++++|. +++.. .+..+++|+.|++++|.+++
T Consensus 132 l----~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 132 I----NTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp H----TTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCC
T ss_pred H----hhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcC
Confidence 2 233455555555554 43321 13334555555555555544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=5e-14 Score=142.58 Aligned_cols=171 Identities=22% Similarity=0.206 Sum_probs=106.9
Q ss_pred cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHH
Q 011480 215 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 294 (484)
Q Consensus 215 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l 294 (484)
.++.|+.|+++++.+.... . + ...++|+.|++++|.+... +. +..+++|+.|+|++|.+.+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~----l-~~l~~L~~L~Ls~N~l~~~-----~~-l~~l~~L~~L~Ls~N~l~~l----- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--G----I-QYLPNVTKLFLNGNKLTDI-----KP-LTNLKNLGWLFLDENKIKDL----- 102 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--T----G-GGCTTCCEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC-----
T ss_pred cCCCCCEEECcCCCCCCCh--H----H-ccCCCCCEEEeeCCCCCCC-----hh-hccCCCCCEEECcCCCCCCC-----
Confidence 4467777777777765421 1 1 1233677777777777663 11 56777777777777777652
Q ss_pred HHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhH
Q 011480 295 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 374 (484)
Q Consensus 295 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~ 374 (484)
. .+..+++|++|+|++|.++.. ..+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+.+..
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCG
T ss_pred h-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCch
Confidence 1 345567777777777777652 2355667777777777776653 23445677777777777766542
Q ss_pred HHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 375 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 375 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
. +..+++|+.|+|++|.+++.. . +.. .++|+.|+|++|+++.
T Consensus 170 ~------l~~l~~L~~L~Ls~N~i~~l~--~----l~~-l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P------LAGLTKLQNLYLSKNHISDLR--A----LAG-LKNLDVLELFSQECLN 211 (605)
T ss_dssp G------GTTCTTCCEEECCSSCCCBCG--G----GTT-CTTCSEEECCSEEEEC
T ss_pred h------hccCCCCCEEECcCCCCCCCh--H----Hcc-CCCCCEEEccCCcCcC
Confidence 2 455677777777777776631 1 111 2567777777776654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=8.4e-14 Score=120.70 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=48.3
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCC-CCcHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-IGDEGA 291 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~~~~ 291 (484)
+..+++|++|++++|.+.+.....+ ...++|++|++++|.+.+. .+..+..+++|++|++++|. +++.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~-- 152 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNL-----SGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDI-- 152 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCC-----TTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCC--
T ss_pred hhcCCCCCEEEeECCccCcccChhh-----cCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCcccc--
Confidence 3445555555555555543221111 1122455555555555443 22334445555555555554 4431
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
. .+..+++|++|++++|.+++.. .+..+++|++|++++|+|+
T Consensus 153 ---~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 153 ---M-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ---G-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred ---H-hhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 1 2334455555555555554411 2334455555555555443
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.41 E-value=4.4e-13 Score=126.60 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=83.1
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCC--C-CCChhHHHHHHHHH--HhCCCcCEEeccCCCCChhHH
Q 011480 301 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY--N-PIGADGAKALSEVL--KFHGNINTLKLGWCQIGASGA 375 (484)
Q Consensus 301 ~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~--n-~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~~ 375 (484)
.++|++|++..|.++.+++..++. ..+|+|++|+|+. + ..++.++..+...+ ..+|+|++|++.+|.+++.+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 456666666666666655544432 1346666666642 1 11121121122212 135677777777777766555
Q ss_pred HHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCC
Q 011480 376 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 455 (484)
Q Consensus 376 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n 455 (484)
..+.+. ..+++|+.|+|+.|.+++.|+..+...+.. .++|+.|++++|.|++.++..+.+.+ -..++++++
T Consensus 270 ~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l~~al-------g~~~~~~~~ 340 (362)
T 2ra8_A 270 EMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKELQKSL-------PMKIDVSDS 340 (362)
T ss_dssp HHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHHHHHC-------CSEEECCSB
T ss_pred HHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHHHHHc-------CCEEEecCC
Confidence 444432 235677777777777777777666554332 26677777777777777777776652 245677766
Q ss_pred c
Q 011480 456 F 456 (484)
Q Consensus 456 ~ 456 (484)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=2.3e-13 Score=137.79 Aligned_cols=168 Identities=25% Similarity=0.199 Sum_probs=97.0
Q ss_pred CCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh
Q 011480 161 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
+.|+.|+++++.+..- ..+..+++|+.|++++|.++.... +..+++|+.|++++|.+.... .
T Consensus 43 ~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------T
T ss_pred CCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------h
Confidence 6677777777776532 135567777777777776654321 556777777777777665421 1
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHH
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 320 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 320 (484)
+ ...++|++|++++|.+... ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++....
T Consensus 105 l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 105 L-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp S-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred h-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh-
Confidence 1 1233566666666666652 1245566666666666666542 234455666666666666654321
Q ss_pred HHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 321 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 321 ~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEE
T ss_pred -----hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCc
Confidence 44556666666666665542 12344556666666665543
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=4.6e-15 Score=134.06 Aligned_cols=180 Identities=17% Similarity=0.174 Sum_probs=133.7
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
..++++++++.+.. ++..+ .++++.|++++|.++... ...+..+++|++|++++|.++... ...+
T Consensus 15 ~~~~l~~~~~~l~~-----~p~~~--~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-----VPSGI--PADTEKLDLQSTGLATLS----DATFRGLTKLTWLNLDYNQLQTLS----AGVF 79 (251)
T ss_dssp GGTEEECTTCCCSS-----CCSCC--CTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCCCCC----TTTT
T ss_pred CCeEEecCCCCccc-----cCCCC--CCCCCEEEccCCCcCccC----HhHhcCcccCCEEECCCCcCCccC----HhHh
Confidence 57889999998876 33222 257999999999887642 223567899999999999998742 2346
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 406 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 406 (484)
..+++|++|++++|.++.... ..+...++|++|++++|.++..... .+..+++|+.|++++|.++......+
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHc
Confidence 677999999999999875432 2234568999999999998864332 24556999999999999987544333
Q ss_pred HHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCCcCchh
Q 011480 407 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 460 (484)
Q Consensus 407 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n~i~~~ 460 (484)
.. .++|+.|++++|+++......+ ...+ .|+.|++++|.++-.
T Consensus 152 ~~-----l~~L~~L~L~~N~l~~~~~~~~----~~l~--~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DK-----LTNLQTLSLSTNQLQSVPHGAF----DRLG--KLQTITLFGNQFDCS 194 (251)
T ss_dssp TT-----CTTCCEEECCSSCCSCCCTTTT----TTCT--TCCEEECCSCCBCTT
T ss_pred Cc-----CcCCCEEECCCCcCCccCHHHH----hCCC--CCCEEEeeCCceeCC
Confidence 22 2789999999999886544333 2334 499999999998765
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=3.5e-14 Score=128.89 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=61.1
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+... + .+..+++|+.|++++|.+++.. . +..+++|++|++++|+++... . +
T Consensus 42 ~L~~L~l~~n~i~~l-----~-~l~~l~~L~~L~L~~N~i~~~~-----~-l~~l~~L~~L~L~~N~l~~l~-----~-~ 103 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSL-----A-GMQFFTNLKELHLSHNQISDLS-----P-LKDLTKLEELSVNRNRLKNLN-----G-I 103 (263)
T ss_dssp TCSEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCSSCCEEECCSSCCSCCT-----T-C
T ss_pred cCcEEECcCCCcccc-----h-HHhhCCCCCEEECCCCccCCCh-----h-hccCCCCCEEECCCCccCCcC-----c-c
Confidence 455666666555542 1 3445555666666555555421 1 344555555555555554411 1 1
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 401 (484)
.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC
T ss_pred cc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch
Confidence 11 5555555555555442 12334455555555555554431 233445555555555555543
No 107
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.37 E-value=7.2e-13 Score=125.11 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHH
Q 011480 330 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 409 (484)
Q Consensus 330 ~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 409 (484)
|+|+.|++.+|.+++.+...+... +.+++|++|+++.|.+++.+...+...+..+++|+.|++++|.|++.++..+..+
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 444444444444444333322221 1234455555555555554444444444444555555555555555555555443
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=2.2e-13 Score=136.43 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=136.1
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 189 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
.+++.|++++|.++.. +..+ .++|+.|++++|.+.. ++ ...++|++|++++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~l-----p~~l--~~~L~~L~Ls~N~l~~--ip-------~~l~~L~~L~Ls~N~l~~-----ip~ 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-----PDNL--PPQITVLEITQNALIS--LP-------ELPASLEYLDACDNRLST-----LPE 117 (571)
T ss_dssp TTCSEEECCSSCCSCC-----CSCC--CTTCSEEECCSSCCSC--CC-------CCCTTCCEEECCSSCCSC-----CCC
T ss_pred CCccEEEeCCCCCCcc-----CHhH--cCCCCEEECcCCCCcc--cc-------cccCCCCEEEccCCCCCC-----cch
Confidence 5899999999987642 2212 3789999999998874 22 223489999999998887 333
Q ss_pred HHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH
Q 011480 269 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 348 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~ 348 (484)
+.. +|+.|++++|.++. ++. .+++|+.|++++|.++... . .+++|++|++++|.++....
T Consensus 118 -l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp-----~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 118 -LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTMLP-----E---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp -CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSCCSCCCC-
T ss_pred -hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcCC-----C---cCCCcCEEECCCCCCCCcch-
Confidence 222 89999999998876 222 4688999999999987622 1 35899999999998876322
Q ss_pred HHHHHHHhCCCcCEEeccCCCCChhHHHHHH-HHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCC
Q 011480 349 ALSEVLKFHGNINTLKLGWCQIGASGAEFVA-DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 427 (484)
Q Consensus 349 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 427 (484)
+ . ++|+.|++++|.++.... +. .+....+.|+.|++++|.|+.... .+.. .++|+.|++++|++
T Consensus 178 -l----~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~-----l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 -L----P--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIPE-NILS-----LDPTCTIILEDNPL 242 (571)
T ss_dssp -C----C--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCCG-GGGG-----SCTTEEEECCSSSC
T ss_pred -h----h--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecCH-HHhc-----CCCCCEEEeeCCcC
Confidence 1 2 789999999998875322 21 111222344999999998886322 1211 27899999999999
Q ss_pred ChhHHHHHHHHH
Q 011480 428 RDDGAFAIAQAL 439 (484)
Q Consensus 428 ~~~~~~~l~~~l 439 (484)
+......+....
T Consensus 243 ~~~~p~~l~~l~ 254 (571)
T 3cvr_A 243 SSRIRESLSQQT 254 (571)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHHhh
Confidence 988777776653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=4.1e-13 Score=134.39 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=67.2
Q ss_pred CCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHH
Q 011480 133 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 212 (484)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 212 (484)
.+++.|++++|.++.. +..+ .++|++|++++|.++. ++ ..+++|+.|++++|.++... .
T Consensus 59 ~~L~~L~Ls~n~L~~l-----p~~l--~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~ip-----~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-----PDNL--PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLSTLP-----E- 117 (571)
T ss_dssp TTCSEEECCSSCCSCC-----CSCC--CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCCC-----C-
T ss_pred CCccEEEeCCCCCCcc-----CHhH--cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCCcc-----h-
Confidence 4677777777766541 1111 2457777777776642 11 23456666666666554311 1
Q ss_pred hhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHH
Q 011480 213 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 292 (484)
Q Consensus 213 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 292 (484)
+.. +|+.|++++|.++.- +. ..++|+.|++++|.++. ++. .+++|+.|++++|.++.
T Consensus 118 l~~--~L~~L~Ls~N~l~~l--p~-------~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~---- 174 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTML--PE-------LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTF---- 174 (571)
T ss_dssp CCT--TCCEEECCSSCCSCC--CC-------CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC----
T ss_pred hhc--CCCEEECCCCcCCCC--CC-------cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCC----
Confidence 111 566666666655431 11 12255666666655554 111 33455555555555544
Q ss_pred HHHHHHHhCCCccEEEccCCCCC
Q 011480 293 KIADALKQNRTITTIDLGGNNIH 315 (484)
Q Consensus 293 ~l~~~l~~~~~L~~L~l~~~~l~ 315 (484)
++. +. ++|+.|++++|.|+
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS
T ss_pred -cch-hh--CCCCEEECcCCCCC
Confidence 111 11 45555555555554
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.28 E-value=4.9e-14 Score=126.27 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=15.9
Q ss_pred CcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCC
Q 011480 134 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 172 (484)
Q Consensus 134 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 172 (484)
++++|++++|.++.... ..+..+++|++|++++|.
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCC
Confidence 45555555555543211 112234455555555553
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.28 E-value=6.2e-14 Score=125.64 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=44.1
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccC-CChHHHHHHHHHHhcCCCccEEEccC-CCCCchHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAE 183 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~ 183 (484)
++++|++++|.+..... ..+..+++|++|++++|. ++.... ..+..+++|++|++++ |.+..-. ..
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~~l~~i~~----~~f~~l~~L~~L~l~~~n~l~~i~----~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDVTLQQLES----HSFYNLSKVTHIEIRNTRNLTYID----PD 99 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCSSCCEECT----TTEESCTTCCEEEEEEETTCCEEC----TT
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCCCcceeCH----hHcCCCcCCcEEECCCCCCeeEcC----HH
Confidence 57777777777654321 123345777777777775 554221 1234456677777766 6554211 11
Q ss_pred HHhcCCCccEEEcCCCCC
Q 011480 184 ALLENSTIRSLHLNGNYG 201 (484)
Q Consensus 184 ~l~~~~~L~~L~l~~~~~ 201 (484)
.+..+++|+.|++++|.+
T Consensus 100 ~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp SEECCTTCCEEEEEEECC
T ss_pred HhCCCCCCCEEeCCCCCC
Confidence 233344455555544443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=1.5e-12 Score=118.21 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=70.4
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
+|++|++++|.+.+. +. +..+++|+.|++++|.+++- .. +.. ++|++|++++|+++.. ..+
T Consensus 64 ~L~~L~L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~------~~l 124 (263)
T 1xeu_A 64 NLKELHLSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDT------DSL 124 (263)
T ss_dssp TCCEEECCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBS------GGG
T ss_pred CCCEEECCCCccCCC-----hh-hccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCC------hhh
Confidence 455555555555542 11 44555666666666655441 11 111 5666666666666652 135
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 401 (484)
..+++|++|++++|.+++.. .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence 55667777777777665531 234556777777777766654 2344557777777777766554
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=1.1e-12 Score=116.47 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=76.6
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH
Q 011480 274 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 353 (484)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~ 353 (484)
++|+.|++++|.++.. ....+..+++|++|++++|+++... ...+..+++|++|+|++|.++.... ..
T Consensus 40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQLTVLPS----AV 107 (229)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCcCCccCh----hH
Confidence 4566666666655542 1122344556666666666654321 1223445666666666666553221 11
Q ss_pred HHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh--H
Q 011480 354 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD--G 431 (484)
Q Consensus 354 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~ 431 (484)
+...++|++|++++|.++.. +..+..+++|+.|++++|.++......+.. .++|+.|++++|.+... .
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLKSIPHGAFDR-----LSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCCCCCTTTTTT-----CTTCCEEECTTSCBCTTBGG
T ss_pred hCcchhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCCccCHHHHhC-----CCCCCEEEeeCCCccCCcch
Confidence 23346667777777666532 223355577777777777766543222211 15677777777776533 2
Q ss_pred HHHHHHHHH
Q 011480 432 AFAIAQALK 440 (484)
Q Consensus 432 ~~~l~~~l~ 440 (484)
+..+...+.
T Consensus 178 ~~~l~~~~~ 186 (229)
T 3e6j_A 178 IMYLRNWVA 186 (229)
T ss_dssp GHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444444
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=7.5e-14 Score=140.44 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHH
Q 011480 275 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 354 (484)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~ 354 (484)
.|+.|++++|.++. ++. +..+++|+.|++++|.++. ++..+..+++|+.|+|++|.++.. . .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 46777777776654 222 4556677777777777663 334456667777777777776642 1 34
Q ss_pred HhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch
Q 011480 355 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 401 (484)
..+++|+.|++++|.+++.. .+..+..+++|+.|++++|.++..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCC
Confidence 45667777777777766532 022344557777777777766554
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.5e-11 Score=101.17 Aligned_cols=85 Identities=13% Similarity=0.191 Sum_probs=37.1
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
++++|++++|.+.+.. ++..+..+++|+.|++++|.+++. ..+..+++|++|++++|.++.. +...+
T Consensus 18 ~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~~ 84 (149)
T 2je0_A 18 DVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVLA 84 (149)
T ss_dssp GCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHHH
T ss_pred cCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHHh
Confidence 4555555555544100 222233445555555555554432 2233344555555555554442 11222
Q ss_pred hcCCCcCEEECCCCCCCh
Q 011480 327 KDNSVITSLDLAYNPIGA 344 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~ 344 (484)
..+++|++|++++|.+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HHCTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCcCCC
Confidence 233455555555554443
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=1.8e-11 Score=100.74 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=60.5
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH
Q 011480 274 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 353 (484)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~ 353 (484)
++++.|++++|.+++.. +...+..+++|++|++++|.++.. ..+..+++|++|++++|.++... ...
T Consensus 17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~----~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGL----EVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCT----HHH
T ss_pred ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchH----HHH
Confidence 45677777776665211 222234456666666666666653 34555566666666666665431 122
Q ss_pred HHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch
Q 011480 354 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 401 (484)
Q Consensus 354 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 401 (484)
+..+++|++|++++|.+++... ...+..+++|+.|++++|.+++.
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGS
T ss_pred hhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccch
Confidence 2334566666666666654211 12344456666666666665554
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=6.2e-12 Score=105.83 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=16.5
Q ss_pred cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCCh
Q 011480 272 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 316 (484)
Q Consensus 272 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 316 (484)
.+++|+.|++++|.+++. ..+..+++|++|++++|.++.
T Consensus 47 ~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp GGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCS
T ss_pred hCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCch
Confidence 344444444444444331 122334444444444444443
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1.7e-12 Score=123.71 Aligned_cols=183 Identities=20% Similarity=0.165 Sum_probs=123.6
Q ss_pred cCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHh-cCCCCcEEEcCCCCCCcHHHHHHHHH
Q 011480 219 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADA 297 (484)
Q Consensus 219 L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~ 297 (484)
-+.++++++.+..- ...+ ...++.|++++|.++.. ....+. .+++|+.|++++|.++... ...
T Consensus 20 ~~~l~c~~~~l~~i-----P~~~---~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~i~----~~~ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNV-----PQSL---PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNFIS----SEA 83 (361)
T ss_dssp TTEEECCSSCCSSC-----CSSC---CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCEEC----TTT
T ss_pred CCEEEeCCCCcCcc-----CccC---CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCccC----hhh
Confidence 35788888876541 1111 23688999999988874 222344 6788999999999887631 223
Q ss_pred HHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHH
Q 011480 298 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 377 (484)
Q Consensus 298 l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~ 377 (484)
+..+++|++|++++|+++... ...+..+++|++|+|++|.+..... ..+...++|++|++++|.++......
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLD----EFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccCCCCCCEEECCCCcCCcCC----HHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHH
Confidence 556789999999999987642 2345667999999999998875432 22345689999999999887643332
Q ss_pred HHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh
Q 011480 378 VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 429 (484)
Q Consensus 378 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 429 (484)
+.. +...++|+.|+|++|.|+......+...-. ..++.|++++|.+..
T Consensus 156 ~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~---~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 156 IKD-GNKLPKLMLLDLSSNKLKKLPLTDLQKLPA---WVKNGLYLHNNPLEC 203 (361)
T ss_dssp TC-----CTTCCEEECCSSCCCCCCHHHHHHSCH---HHHTTEECCSSCEEC
T ss_pred hcC-cccCCcCCEEECCCCCCCccCHHHhhhccH---hhcceEEecCCCccC
Confidence 211 134688999999999888766554443200 125789999998753
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=5.2e-13 Score=116.81 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH
Q 011480 274 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 353 (484)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~ 353 (484)
++|++|++++|.++... ...+..+++|++|++++|+++... ...+..+++|++|++++|.++.... ..
T Consensus 28 ~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLP----NGVFDELTSLTQLYLGGNKLQSLP----NGVFNKLTSLTYLNLSTNQLQSLPN----GV 95 (208)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEcCCCccCcCC----hhhhcccccCcEEECCCCccCccC----hhhcCCCCCcCEEECCCCcCCccCH----hH
Confidence 35666666666554321 112334556666666666655321 1223445666666666666553221 11
Q ss_pred HHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHH
Q 011480 354 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 433 (484)
Q Consensus 354 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 433 (484)
+...++|++|++++|.++..... .+..+++|+.|++++|.++......+.. .++|+.|++++|.+..
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDR-----LTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTT-----CTTCCEEECCSCCBCC----
T ss_pred hcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhcc-----CCCccEEEecCCCeec----
Confidence 23446667777776666543221 2334567777777777666543222211 1567777777776652
Q ss_pred HHHHHHHhCCccceeEeeccCCcCchhhhhhhh
Q 011480 434 AIAQALKANEDVAVTSLNLANNFLTKFGQSALT 466 (484)
Q Consensus 434 ~l~~~l~~~~~~~L~~l~l~~n~i~~~~~~~l~ 466 (484)
.++ .+++|+++.|+++......+.
T Consensus 163 -------~~~--~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 -------TCP--GIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -------CTT--TTHHHHHHHHHCTTTBBCTTS
T ss_pred -------CCC--CHHHHHHHHHhCCceeeccCc
Confidence 122 266666666666654444333
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=8.4e-12 Score=105.02 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHH
Q 011480 274 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 353 (484)
Q Consensus 274 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~ 353 (484)
++|+.|++++|.+++.. +...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.... ...
T Consensus 24 ~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGL----DML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCC----CHH
T ss_pred ccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHH----HHH
Confidence 44555555555554110 122223345566666666655542 33444555666666655554421 111
Q ss_pred HHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCc
Q 011480 354 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 400 (484)
Q Consensus 354 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 400 (484)
+..+++|++|++++|.+++... ...+..+++|+.|++++|.++.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGT
T ss_pred HhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcc
Confidence 2224555555555555544211 0122334555555555554443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=4.7e-12 Score=120.69 Aligned_cols=181 Identities=14% Similarity=0.039 Sum_probs=122.3
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHh
Q 011480 192 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 271 (484)
Q Consensus 192 ~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~ 271 (484)
+.++++++.++... .. -.+.++.|++++|.+....... +.....+|++|++++|.+... .+..+.
T Consensus 21 ~~l~c~~~~l~~iP-----~~--~~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i----~~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVP-----QS--LPSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFI----SSEAFV 85 (361)
T ss_dssp TEEECCSSCCSSCC-----SS--CCTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEeCCCCcCccC-----cc--CCCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCcc----Chhhcc
Confidence 45666666654321 11 1346899999999887632211 111345899999999998874 223467
Q ss_pred cCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHH
Q 011480 272 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 351 (484)
Q Consensus 272 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~ 351 (484)
.+++|+.|+|++|.++.. ....+..+++|+.|++++|.++... ...+..+++|++|+|++|.++......+
T Consensus 86 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~- 156 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQISRFPVELI- 156 (361)
T ss_dssp TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCGGGT-
T ss_pred CCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCCCcCCeeCHHHh-
Confidence 888999999999988763 1223556789999999999988642 2346667999999999998875332221
Q ss_pred HHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCC--ccEEEeccCCCCc
Q 011480 352 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT--ISILDLRANGLRD 400 (484)
Q Consensus 352 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~--L~~L~l~~n~i~~ 400 (484)
..+...++|+.|++++|.++......+.. .+. ++.|++++|.+.-
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQK----LPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHH----SCHHHHTTEECCSSCEEC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhh----ccHhhcceEEecCCCccC
Confidence 11134689999999999988765554443 355 4789999998753
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.11 E-value=1.4e-12 Score=114.86 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=57.2
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHH
Q 011480 300 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 379 (484)
Q Consensus 300 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 379 (484)
.+++|+.|++++|+++... ...+..+++|++|+|++|.++.... ..+...++|++|++++|.++.....
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~--- 122 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELA----PDAFQGLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVD--- 122 (220)
T ss_dssp TCTTCCEEECCSSCCCEEC----TTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT---
T ss_pred CCCCCCEEECCCCcCCCcC----HHHhhCCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHH---
Confidence 3445555555555554321 1223344555555555555442211 1112335555555555555443222
Q ss_pred HHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC-hhHHHHHHHHHH
Q 011480 380 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK 440 (484)
Q Consensus 380 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~l~ 440 (484)
.+..+++|+.|++++|.++......+.. .++|+.|++++|.+. +-....+...+.
T Consensus 123 -~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 123 -AFQDLHNLNLLSLYDNKLQTIAKGTFSP-----LRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTT-----CTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred -HcCCCCCCCEEECCCCcCCEECHHHHhC-----CCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 2233466666666666665543222211 145666666666643 233344444333
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=4.6e-13 Score=134.69 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=91.3
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
.|+.|++++|.++. ++. +..+++|+.|++++|.++. ++..+..+++|++|++++|.++. +. .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-cc
Confidence 58888998888876 343 6778889999999888874 44567778889999999998886 22 56
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEe
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 393 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l 393 (484)
..+++|++|++++|.++.... ...+..+++|+.|++++|.+++... ....++..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 777899999999998876430 1234566889999999988765422 22333445688888864
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=1.5e-11 Score=109.01 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=90.5
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
++++|++++|.+... .+..+..+++|+.|++++|.++... ...+..+++|++|++++|+++... ...+
T Consensus 41 ~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~ 108 (229)
T 3e6j_A 41 NAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLDLGTNQLTVLP----SAVF 108 (229)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred CCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEECCCCcCCccC----hhHh
Confidence 677777777776653 2334566777777777777765421 122345677888888888776531 2234
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCch--hHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE--GAK 404 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~ 404 (484)
..+++|++|++++|.+... ...+...++|++|++++|.++.... ..+..+++|+.|++++|.+... .+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c~c~~~~ 179 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFGNPWDCECRDIM 179 (229)
T ss_dssp TTCTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCBCTTBGGGH
T ss_pred CcchhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCCccCCcchhH
Confidence 5568888888888877632 2233556788888888888765433 2344568888888888877643 234
Q ss_pred HHHHHH
Q 011480 405 CLAQSF 410 (484)
Q Consensus 405 ~l~~~~ 410 (484)
.+...+
T Consensus 180 ~l~~~~ 185 (229)
T 3e6j_A 180 YLRNWV 185 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=2.5e-12 Score=113.31 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=51.1
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHH
Q 011480 300 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 379 (484)
Q Consensus 300 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 379 (484)
.+++|++|++++|.++... ...+..+++|++|++++|.++..... .+...++|++|++++|.++......
T Consensus 55 ~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~-- 124 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIE----EGAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDS-- 124 (220)
T ss_dssp GCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTS--
T ss_pred cCCCCCEEECCCCcCCEEC----HHHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhH--
Confidence 3445555555555544321 11233445555555555554432211 1223455555555555554432221
Q ss_pred HHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC
Q 011480 380 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 428 (484)
Q Consensus 380 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 428 (484)
+..+++|+.|++++|.++......+.. .++|+.|++++|.+.
T Consensus 125 --~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 125 --FIGLSSVRLLSLYDNQITTVAPGAFDT-----LHSLSTLNLLANPFN 166 (220)
T ss_dssp --STTCTTCSEEECTTSCCCCBCTTTTTT-----CTTCCEEECCSCCEE
T ss_pred --cCCCccCCEEECCCCcCCEECHHHhcC-----CCCCCEEEecCcCCc
Confidence 223355666666666555543222221 145666666666543
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=5.4e-12 Score=109.33 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHH
Q 011480 297 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE 376 (484)
Q Consensus 297 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~ 376 (484)
.+..+++|++|++++|.++... .+..+++|++|++++|.++... ..+..+++|++|++++|.+++..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~~l~-----~~~~~~~~L~~L~L~~N~l~~l~-- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQIASLS-- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEECSCS-----SHHHHHHHCSEEEEEEEECCCHH--
T ss_pred HHhcCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCccccc-----chhhcCCcCCEEECcCCcCCcCC--
Confidence 4445566666666666555421 2333466666666666554211 11112246677777777665531
Q ss_pred HHHHHHHcCCCccEEEeccCCCCchhH-HHHHHHHHhcCccccEEEcCCCCCChhH------HHHHHHHHHhCCccceeE
Q 011480 377 FVADMLRYNNTISILDLRANGLRDEGA-KCLAQSFKVVNEALTSIDLAFNEIRDDG------AFAIAQALKANEDVAVTS 449 (484)
Q Consensus 377 ~l~~~l~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~------~~~l~~~l~~~~~~~L~~ 449 (484)
. +..+++|+.|++++|.+++.+. ..+.. .++|+.|++++|.++... .......+..+++ |+.
T Consensus 110 ~----~~~l~~L~~L~l~~N~i~~~~~~~~l~~-----l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~--L~~ 178 (198)
T 1ds9_A 110 G----IEKLVNLRVLYMSNNKITNWGEIDKLAA-----LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN--LKK 178 (198)
T ss_dssp H----HHHHHHSSEEEESEEECCCHHHHHHHTT-----TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS--CSE
T ss_pred c----cccCCCCCEEECCCCcCCchhHHHHHhc-----CCCCCEEEecCCccccccccccchHHHHHHHHHhCCC--cEE
Confidence 2 2333667777777777765332 11211 156777777777665431 1222334555554 777
Q ss_pred eeccCCcCch
Q 011480 450 LNLANNFLTK 459 (484)
Q Consensus 450 l~l~~n~i~~ 459 (484)
|| ++.+++
T Consensus 179 Ld--~~~i~~ 186 (198)
T 1ds9_A 179 LD--GMPVDV 186 (198)
T ss_dssp EC--CGGGTT
T ss_pred EC--CcccCH
Confidence 66 565555
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=2.7e-12 Score=113.11 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=108.7
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHh
Q 011480 277 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 356 (484)
Q Consensus 277 ~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~ 356 (484)
+.++++++.++. ++..+ ...+++|++++|.++.... ...+..+++|++|++++|.++.... ..+..
T Consensus 14 ~~l~~s~n~l~~-----iP~~~--~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~~----~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-----IPEHI--PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIEE----GAFEG 79 (220)
T ss_dssp TEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEECT----TTTTT
T ss_pred CEeEeCCCCccc-----CccCC--CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEECH----HHhCC
Confidence 466776666654 22111 2456788888888776311 1235677999999999999876432 23345
Q ss_pred CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHH
Q 011480 357 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA 436 (484)
Q Consensus 357 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 436 (484)
.++|++|++++|.++..... .+..+++|+.|++++|.++......+.. .++|+.|++++|+|+......+.
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSFIG-----LSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSSTT-----CTTCSEEECTTSCCCCBCTTTTT
T ss_pred CCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHcCC-----CccCCEEECCCCcCCEECHHHhc
Confidence 68999999999999765443 3455699999999999998764443332 27899999999999875444443
Q ss_pred HHHHhCCccceeEeeccCCcCch
Q 011480 437 QALKANEDVAVTSLNLANNFLTK 459 (484)
Q Consensus 437 ~~l~~~~~~~L~~l~l~~n~i~~ 459 (484)
..+ +|+.|++++|.+.-
T Consensus 151 ----~l~--~L~~L~L~~N~l~c 167 (220)
T 2v70_A 151 ----TLH--SLSTLNLLANPFNC 167 (220)
T ss_dssp ----TCT--TCCEEECCSCCEEC
T ss_pred ----CCC--CCCEEEecCcCCcC
Confidence 233 49999999998764
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=1.7e-11 Score=127.24 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=65.7
Q ss_pred HHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHH
Q 011480 211 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 290 (484)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~ 290 (484)
..+..++.|+.|++++|.+..- ...+. ....|++|++++|.++. ++..+..+++|+.|+|++|.++.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l-----~~~~~-~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNI-----SANIF-KYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCC-----CGGGG-GCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS--
T ss_pred hhhccCCCCcEEECCCCCCCCC-----Chhhc-CCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc--
Confidence 3344566666666666655421 01111 12356667777666663 44445666677777777776653
Q ss_pred HHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHH
Q 011480 291 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 348 (484)
Q Consensus 291 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~ 348 (484)
++..+..+++|++|+|++|.++. +...+..+++|+.|+|++|.++.....
T Consensus 285 ---lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 285 ---LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ---CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ---cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChH
Confidence 33345556677777777776653 333355667777777777776654433
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.02 E-value=1.5e-11 Score=108.25 Aligned_cols=143 Identities=21% Similarity=0.183 Sum_probs=82.5
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHh
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 326 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l 326 (484)
.+++|++++|.+... .+..+..+++|+.|++++|.++.. ....+..+++|++|++++|.++... ...+
T Consensus 33 ~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~f 100 (220)
T 2v9t_B 33 TITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITELP----KSLF 100 (220)
T ss_dssp TCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEECCSSCCCCCC----TTTT
T ss_pred CCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEECCCCcCCccC----HhHc
Confidence 566666666665542 112345566677777777766542 1223445667777777777766421 1224
Q ss_pred hcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC-chhHHH
Q 011480 327 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR-DEGAKC 405 (484)
Q Consensus 327 ~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~-~~~~~~ 405 (484)
..+++|++|++++|.++..... .+...++|++|++++|.++..... .+..+++|+.|++++|.+. +..+..
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKG----TFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cCCCCCCEEECCCCCCCEeCHH----HcCCCCCCCEEECCCCcCCEECHH----HHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 4557777777777766553322 223456777777777777654332 2344577888888888663 334444
Q ss_pred HHHH
Q 011480 406 LAQS 409 (484)
Q Consensus 406 l~~~ 409 (484)
+...
T Consensus 173 l~~~ 176 (220)
T 2v9t_B 173 LADY 176 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=1e-10 Score=99.11 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=6.4
Q ss_pred cceEEEccCCCCC
Q 011480 247 KLAVLDIGNNSIS 259 (484)
Q Consensus 247 ~L~~L~l~~~~i~ 259 (484)
++++|++++|.+.
T Consensus 20 ~L~~L~l~~n~l~ 32 (176)
T 1a9n_A 20 RDRELDLRGYKIP 32 (176)
T ss_dssp SCEEEECTTSCCC
T ss_pred CceEEEeeCCCCc
Confidence 4455555555444
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=8.4e-11 Score=99.63 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=48.9
Q ss_pred cCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHH
Q 011480 215 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 294 (484)
Q Consensus 215 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l 294 (484)
.+++|++|++++|.+..- +. +....++|++|++++|.+... ..+..+++|++|++++|.++...
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~----~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~---- 80 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--EN----LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIG---- 80 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CC----GGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEEC----
T ss_pred CcCCceEEEeeCCCCchh--HH----hhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccC----
Confidence 455666666666655431 11 111122456666666555541 22344555555555555554310
Q ss_pred HHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCC
Q 011480 295 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 342 (484)
Q Consensus 295 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i 342 (484)
...+..+++|++|++++|.++.... ...+..+++|+.|++++|++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGG
T ss_pred cchhhcCCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCC
Confidence 0112334455555555555543110 01233445555555555544
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=7.9e-12 Score=108.26 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=15.6
Q ss_pred cceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCc
Q 011480 247 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 288 (484)
Q Consensus 247 ~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 288 (484)
+|++|++++|.+.. ++ .+..+++|+.|++++|.+++
T Consensus 94 ~L~~L~L~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 94 TLEELWISYNQIAS-----LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HCSEEEEEEEECCC-----HH-HHHHHHHSSEEEESEEECCC
T ss_pred cCCEEECcCCcCCc-----CC-ccccCCCCCEEECCCCcCCc
Confidence 34445554444443 11 23334444444444444443
No 133
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.99 E-value=1.9e-10 Score=95.31 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCC-CCChhHHHHHHHHHHhCCCcCEEeccCCC-CChhHHHHHH
Q 011480 302 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVA 379 (484)
Q Consensus 302 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~ 379 (484)
..|++||+++|.++++|+..+ ..+++|+.|+|++| .++|.++..+......+++|++|++++|. +++.+...+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence 467888888888888776543 45688888888887 47887777776421112467777777774 777766654
Q ss_pred HHHHcCCCccEEEeccC-CCCchhH
Q 011480 380 DMLRYNNTISILDLRAN-GLRDEGA 403 (484)
Q Consensus 380 ~~l~~~~~L~~L~l~~n-~i~~~~~ 403 (484)
..+++|+.|++++| .+++.+.
T Consensus 136 ---~~~~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 136 ---HHFRNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp ---GGCTTCCEEEEESCTTCCCHHH
T ss_pred ---hcCCCCCEEECCCCCCCCchHH
Confidence 34577777777777 5777653
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.98 E-value=2.8e-10 Score=94.32 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=42.7
Q ss_pred CcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCC-CChhHHHHHHHHHHcCCCccEEEeccC-CCCchhHHHHHH
Q 011480 331 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQ 408 (484)
Q Consensus 331 ~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~ 408 (484)
.|++||++++.+++.++..+ ..+++|++|+|++|. +++.+...+..+-..+++|+.|+|++| .|||.|+..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 45555555555555554433 234555555555553 555544444331111234555555555 355555544432
Q ss_pred HHHhcCccccEEEcCCCC-CChh
Q 011480 409 SFKVVNEALTSIDLAFNE-IRDD 430 (484)
Q Consensus 409 ~~~~~~~~L~~L~l~~n~-i~~~ 430 (484)
. ++|++|+|++|. |++.
T Consensus 138 ~-----~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 138 F-----RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp C-----TTCCEEEEESCTTCCCH
T ss_pred C-----CCCCEEECCCCCCCCch
Confidence 1 445555555543 4444
No 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=4.3e-11 Score=104.48 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=50.0
Q ss_pred hcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHH
Q 011480 271 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 350 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l 350 (484)
..+++|++|++++|.++.. ....+..+++|++|++++|.++... ...+..+++|++|++++|.++....
T Consensus 49 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~--- 117 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSLP----NGVFDKLTQLKELALNTNQLQSLPD--- 117 (208)
T ss_dssp TTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT---
T ss_pred cccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCccC----HhHhcCccCCCEEEcCCCcCcccCH---
Confidence 3444555555555544431 0111233455555555555544321 1123344555555555555443211
Q ss_pred HHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 351 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 351 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
..+...++|++|++++|.+++... ..+..+++|+.|++++|.+.
T Consensus 118 -~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 118 -GVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCBC
T ss_pred -hHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCCCee
Confidence 112234555555555555543222 11233456666666666544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=1.6e-11 Score=127.44 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHH
Q 011480 155 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI 234 (484)
Q Consensus 155 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 234 (484)
..+..++.|+.|+|++|.+.. ++..+..++.|+.|+|++|.++. ++..+..+++|+.|+|++|.+.. +
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~--l 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS--L 285 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS--C
T ss_pred hhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc--c
Confidence 334445566666666665531 22233345566666666665541 22334555566666666655542 1
Q ss_pred HHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcH
Q 011480 235 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 289 (484)
Q Consensus 235 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 289 (484)
+. .+ ....+|++|++++|.++. ++..+..+++|+.|+|++|.++..
T Consensus 286 p~---~~-~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 286 PA---EL-GSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CS---SG-GGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred Ch---hh-cCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCC
Confidence 11 11 111245555555555543 333345555555555555555543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=1.8e-10 Score=99.00 Aligned_cols=110 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHH
Q 011480 275 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 354 (484)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~ 354 (484)
+++.|++++|.++..... ..+..+++|++|++++|+++... ...+..+++|++|++++|.++..... .+
T Consensus 30 ~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISNK----MF 98 (192)
T ss_dssp TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECSS----SS
T ss_pred CCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccCHH----Hh
Confidence 455555555544431000 01333455555555555554321 12233445555555555554432211 11
Q ss_pred HhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 355 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 355 ~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
...++|++|++++|.+++.... .+...++|+.|++++|.+.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPG----SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTT----SSTTCTTCCEEECTTCCBC
T ss_pred cCCCCCCEEECCCCcCCeeCHH----HhhcCCCCCEEEeCCCCcc
Confidence 2234455555555554432211 1222345555555555443
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.76 E-value=4.3e-10 Score=96.66 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 275 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 275 ~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
+|+.|++++|.++. +...+..+++|++|++++|.++... ...+..+++|++|+|++|.++
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLS----NQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeC----HhHccCCCCCCEEECCCCccC
Confidence 44445554444432 1122333444555555555444321 112333344555555554443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=1.9e-10 Score=98.83 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=97.7
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHh
Q 011480 277 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 356 (484)
Q Consensus 277 ~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~ 356 (484)
+.++++++.++. ++..+ ...+++|++++|.++..... ..+..+++|++|++++|.++.... ..+..
T Consensus 11 ~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEP----NAFEG 76 (192)
T ss_dssp TEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCT----TTTTT
T ss_pred CEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCH----hHcCC
Confidence 677777777654 22212 24899999999998763211 125677999999999999876432 23345
Q ss_pred CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCCh-hHHHHH
Q 011480 357 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAI 435 (484)
Q Consensus 357 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l 435 (484)
.++|++|++++|.+++..... +...++|+.|++++|.++......+.. .++|+.|++++|.++. -....+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEH-----LNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTT-----CTTCCEEECTTCCBCCSGGGHHH
T ss_pred cccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhhc-----CCCCCEEEeCCCCccCcCcchHH
Confidence 689999999999998754432 345689999999999998764433322 2689999999999763 333444
Q ss_pred HHHH
Q 011480 436 AQAL 439 (484)
Q Consensus 436 ~~~l 439 (484)
...+
T Consensus 148 ~~~l 151 (192)
T 1w8a_A 148 AEWL 151 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.75 E-value=3.9e-10 Score=96.94 Aligned_cols=139 Identities=16% Similarity=0.205 Sum_probs=98.7
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHh
Q 011480 277 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 356 (484)
Q Consensus 277 ~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~ 356 (484)
+.++++++.++. ++..+ .+.|++|++++|.++. +...+..+++|++|++++|.++..... .+..
T Consensus 13 ~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQ----SFSN 76 (193)
T ss_dssp TEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTT----TTTT
T ss_pred CEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHh----HccC
Confidence 567777776654 22212 3689999999999985 334677889999999999988764322 2345
Q ss_pred CCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCC-hhHHHHH
Q 011480 357 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAI 435 (484)
Q Consensus 357 ~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l 435 (484)
.++|++|++++|.++...... +..+++|+.|++++|.++......+.. .++|+.|++++|.+. +-....+
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~~~C~c~l~~l 147 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFND-----LSALSHLAIGANPLYCDCNMQWL 147 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTT-----CTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhhc-----CccccEEEeCCCCeecCCcCHHH
Confidence 689999999999988754433 445699999999999988654332322 278999999999864 3444555
Q ss_pred HHHHH
Q 011480 436 AQALK 440 (484)
Q Consensus 436 ~~~l~ 440 (484)
...+.
T Consensus 148 ~~~~~ 152 (193)
T 2wfh_A 148 SDWVK 152 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=3.7e-10 Score=106.05 Aligned_cols=278 Identities=14% Similarity=0.124 Sum_probs=132.8
Q ss_pred CCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCC--hHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHH
Q 011480 106 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR--DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 183 (484)
Q Consensus 106 ~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 183 (484)
++++|.++++ +.......+... +++|+.|++++|.+. .... ...+.++.+.+..+.+.+ .
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~~-------~~~~~~~~~~~~~~~I~~-------~ 87 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGKA-------GTYPNGKFYIYMANFVPA-------Y 87 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEESS-------SSSGGGCCEEECTTEECT-------T
T ss_pred ceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCcc-------ccccccccccccccccCH-------H
Confidence 4888888874 444443333321 588999999988876 2110 011223445555554432 2
Q ss_pred HHhc--------CCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccC
Q 011480 184 ALLE--------NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 255 (484)
Q Consensus 184 ~l~~--------~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~ 255 (484)
++.. +++|+++.+.. .++..+. .++..|++|+++++..+.+..-+...+ ..+.++..+....
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~~~aF-----~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLLPEAL-----ADSVTAIFIPLGS 157 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEECTTSS-----CTTTCEEEECTTC
T ss_pred HhcccccccccccCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccchhhh-----cCCCceEEecCcc
Confidence 3455 78888888877 5544332 346678888888888876543221111 2222455555443
Q ss_pred CCC--ChhhHHHHHHHHhcCCCCc-EEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCc
Q 011480 256 NSI--SAKGAFHVAEYIKNCKSLL-WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 332 (484)
Q Consensus 256 ~~i--~~~~~~~l~~~l~~~~~L~-~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L 332 (484)
... ....+ -..++..|..|+ .+.+....--. ..+...--...+++.+.+.++ +.......+. ..|++|
T Consensus 158 ~~~~~~~~~i--~~~~f~~~~~L~~~i~~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L 228 (329)
T 3sb4_A 158 SDAYRFKNRW--EHFAFIEGEPLETTIQVGAMGKLE---DEIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNL 228 (329)
T ss_dssp THHHHTSTTT--TTSCEEESCCCEEEEEECTTCCHH---HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTC
T ss_pred hhhhhccccc--cccccccccccceeEEecCCCcHH---HHHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCC
Confidence 110 00000 000123344454 34443321100 001110001345555555544 2332222222 225666
Q ss_pred CEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCcc-EEEeccCCCCchhHHHHHHHHH
Q 011480 333 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS-ILDLRANGLRDEGAKCLAQSFK 411 (484)
Q Consensus 333 ~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~~~~ 411 (484)
+++++++|.+...... .+..|++|+.+++.++ +...+..+ +..|++|+ .+++.+ .++..+...|..+
T Consensus 229 ~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c-- 296 (329)
T 3sb4_A 229 VSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIEFGAFMGC-- 296 (329)
T ss_dssp CEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEECTTTTTTC--
T ss_pred eEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEchhhhhCC--
Confidence 6666666655443321 2234566666666665 44333222 34456666 666665 4444333333221
Q ss_pred hcCccccEEEcCCCCCChhHHHHH
Q 011480 412 VVNEALTSIDLAFNEIRDDGAFAI 435 (484)
Q Consensus 412 ~~~~~L~~L~l~~n~i~~~~~~~l 435 (484)
++|+++++++|.++..+..++
T Consensus 297 ---~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 297 ---DNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp ---TTEEEEEECSSCCCEECTTTT
T ss_pred ---ccCCEEEeCCCccCccchhhh
Confidence 556667666666665544443
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.66 E-value=1.2e-09 Score=92.56 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=7.4
Q ss_pred CCCccEEEccCCCCC
Q 011480 301 NRTITTIDLGGNNIH 315 (484)
Q Consensus 301 ~~~L~~L~l~~~~l~ 315 (484)
+++|++|++++|.++
T Consensus 51 l~~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQ 65 (177)
T ss_dssp CTTCSEEECCSSCCC
T ss_pred cccccEEECCCCcce
Confidence 344555555555444
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=1.5e-09 Score=91.88 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=94.9
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHH
Q 011480 276 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 355 (484)
Q Consensus 276 L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~ 355 (484)
.+.++++++.++.. +.. ..++|++|++++|+++... ...+..+++|++|++++|.++.... ..+.
T Consensus 9 ~~~l~~~~~~l~~~-----p~~--~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-----PTG--IPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSQNQIQSLPD----GVFD 73 (177)
T ss_dssp TTEEECCSSCCSSC-----CTT--CCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTTT
T ss_pred CCEEEecCCCCccC-----CCC--CCCCCcEEEeCCCcccEeC----HHHhcCcccccEEECCCCcceEeCh----hHcc
Confidence 45666666655541 111 1357888888888877532 2235667999999999998875322 1234
Q ss_pred hCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh--HHH
Q 011480 356 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD--GAF 433 (484)
Q Consensus 356 ~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~ 433 (484)
..++|++|++++|.++..... .+..+++|+.|++++|.++......+.. .++|+.|++++|.++.. .+.
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNG----VFDKLTQLKELALDTNQLKSVPDGIFDR-----LTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTT-----CTTCCEEECCSSCBCCCHHHHH
T ss_pred CCCccCEEECCCCCccccCHH----HhhCCcccCEEECcCCcceEeCHHHhcC-----CcccCEEEecCCCeeccCccHH
Confidence 568999999999998764332 2345689999999999888644322211 27799999999988653 345
Q ss_pred HHHHHHHhCC
Q 011480 434 AIAQALKANE 443 (484)
Q Consensus 434 ~l~~~l~~~~ 443 (484)
.+...+....
T Consensus 145 ~l~~~~~~~~ 154 (177)
T 2o6r_A 145 YLSRWLNKNS 154 (177)
T ss_dssp HHHHHHHHTG
T ss_pred HHHHHHhhCc
Confidence 5555555443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=7.2e-10 Score=104.08 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=145.5
Q ss_pred CCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh
Q 011480 161 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 240 (484)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 240 (484)
+.+++|.++++ +....+..+.. .+++|+.|++++|.+...... -...+.++.+.+..+.+....+......
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~---~l~~L~~LdLs~n~i~~~~~~-----~~~~~~~~~~~~~~~~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRD---EFPSLKVLDISNAEIKMYSGK-----AGTYPNGKFYIYMANFVPAYAFSNVVNG 95 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHH---SCTTCCEEEEEEEEECCEEES-----SSSSGGGCCEEECTTEECTTTTEEEETT
T ss_pred CceeEEEEecc-ccHHHHHHHHH---hhccCeEEecCcceeEEecCc-----cccccccccccccccccCHHHhcccccc
Confidence 34777777764 33333332221 156777777777765410000 0011123334444443333211000000
Q ss_pred hccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCC------
Q 011480 241 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI------ 314 (484)
Q Consensus 241 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l------ 314 (484)
....+.+|+++++.. .+...+ ..++..|++|+.++++.|.+..-+. .++..+.++..+.+.....
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~----~~aF~~~~~L~~l~l~~n~i~~i~~----~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIE----DAAFKGCDNLKICQIRKKTAPNLLP----EALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEEC----TTTTTTCTTCCEEEBCCSSCCEECT----TSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred cccccCCCcEEECCc-cccchh----HHHhhcCcccceEEcCCCCccccch----hhhcCCCceEEecCcchhhhhcccc
Confidence 000034788888877 555421 1245677888888888776543211 1233345555555443110
Q ss_pred -Ch-------------------hHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhH
Q 011480 315 -HS-------------------KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 374 (484)
Q Consensus 315 -~~-------------------~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~ 374 (484)
.+ .-...+...-....++..+.+.++ +.......+. ..+++|+.+++++|.++..+
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCCEEECTTBCCCEEC
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCeEEECCCCCcceec
Confidence 00 000001111111244455555544 3333333322 34789999999999887765
Q ss_pred HHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCcccc-EEEcCCCCCChhHHHHHHHHHHhCCccceeEeecc
Q 011480 375 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT-SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 453 (484)
Q Consensus 375 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~-~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~ 453 (484)
..+ +..|++|+.+++++| ++..+...|... .+|+ .+++.+ .++..+..++. .|+ +|+.+++.
T Consensus 243 ~~a----F~~~~~L~~l~l~~n-i~~I~~~aF~~~-----~~L~~~l~l~~-~l~~I~~~aF~----~c~--~L~~l~l~ 305 (329)
T 3sb4_A 243 DFT----FAQKKYLLKIKLPHN-LKTIGQRVFSNC-----GRLAGTLELPA-SVTAIEFGAFM----GCD--NLRYVLAT 305 (329)
T ss_dssp TTT----TTTCTTCCEEECCTT-CCEECTTTTTTC-----TTCCEEEEECT-TCCEECTTTTT----TCT--TEEEEEEC
T ss_pred Hhh----hhCCCCCCEEECCcc-cceehHHHhhCC-----hhccEEEEEcc-cceEEchhhhh----CCc--cCCEEEeC
Confidence 544 456799999999987 666554444332 6799 999998 67766555553 444 49999999
Q ss_pred CCcCchhhhhhhhhhhh
Q 011480 454 NNFLTKFGQSALTDAKD 470 (484)
Q Consensus 454 ~n~i~~~~~~~l~~~~~ 470 (484)
+|.++..+..+|....+
T Consensus 306 ~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVP 322 (329)
T ss_dssp SSCCCEECTTTTCTTCC
T ss_pred CCccCccchhhhcCCcc
Confidence 99999999998876544
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.61 E-value=4.3e-11 Score=113.54 Aligned_cols=239 Identities=13% Similarity=0.031 Sum_probs=139.7
Q ss_pred cCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHH-HHHhcCCCccEEEcCCCCCCh-HHHHHHHHH
Q 011480 135 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLA-EALLENSTIRSLHLNGNYGGA-LGANALAKG 212 (484)
Q Consensus 135 L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~ 212 (484)
-+.++.++++++.. +..+ .+++++|++++|+++. ++ .++..+++|++|++++|.+.. ... .+
T Consensus 11 ~~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~ 74 (350)
T 4ay9_X 11 NRVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA----DV 74 (350)
T ss_dssp TTEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT----TS
T ss_pred CCEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh----hH
Confidence 36677787777652 2211 2579999999998853 22 346678899999999987642 111 23
Q ss_pred hhcCCCcCE-EEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCC-CCCCcHH
Q 011480 213 LEGNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEG 290 (484)
Q Consensus 213 l~~~~~L~~-L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~-~~l~~~~ 290 (484)
+.+++++.+ +.+.+|.+..... ......++|++|++++|.+.... ........++..|++.+ +.+..-.
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~-----~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINP-----EAFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECT-----TSBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCc-----hhhhhccccccccccccccccCC----chhhcccchhhhhhhcccccccccc
Confidence 556777665 5556676654211 11133457999999998876531 11122344567777755 3554321
Q ss_pred HHHHHHHHHh-CCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCC-CCCChhHHHHHHHHHHhCCCcCEEeccCC
Q 011480 291 AEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWC 368 (484)
Q Consensus 291 ~~~l~~~l~~-~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~-n~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 368 (484)
. ..+.. ...++.|++++|+++... .......+|++|++++ |.++.... ..+...++|++|++++|
T Consensus 146 ~----~~f~~~~~~l~~L~L~~N~i~~i~-----~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 146 R----NSFVGLSFESVILWLNKNGIQEIH-----NSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRT 212 (350)
T ss_dssp T----TSSTTSBSSCEEEECCSSCCCEEC-----TTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTS
T ss_pred c----cchhhcchhhhhhccccccccCCC-----hhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCC
Confidence 0 11222 246788999999887532 2222346788999875 44443221 12344578999999999
Q ss_pred CCChhHHHHHHHHHHcCCCccEEEeccC-CCCchhHHHHHHHHHhcCccccEEEcCCC
Q 011480 369 QIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 425 (484)
Q Consensus 369 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~L~~L~l~~n 425 (484)
.++...... ..+|+.|.+.++ .+..-. .+ .. -++|+.+++.++
T Consensus 213 ~l~~lp~~~-------~~~L~~L~~l~~~~l~~lP--~l----~~-l~~L~~l~l~~~ 256 (350)
T 4ay9_X 213 RIHSLPSYG-------LENLKKLRARSTYNLKKLP--TL----EK-LVALMEASLTYP 256 (350)
T ss_dssp CCCCCCSSS-------CTTCCEEECTTCTTCCCCC--CT----TT-CCSCCEEECSCH
T ss_pred CcCccChhh-------hccchHhhhccCCCcCcCC--Cc----hh-CcChhhCcCCCC
Confidence 887543221 256777776655 333221 01 11 167888888764
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.52 E-value=1.3e-10 Score=110.24 Aligned_cols=184 Identities=14% Similarity=0.051 Sum_probs=105.3
Q ss_pred CCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHH-HHHhcCCCCcE-EEcCCCCCCcHHHHHH
Q 011480 217 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKNCKSLLW-INLYMNDIGDEGAEKI 294 (484)
Q Consensus 217 ~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~-~~l~~~~~L~~-L~l~~~~l~~~~~~~l 294 (484)
+++++|++++|.+..-....+ ...++|++|++++|.+... ++ .++..++++.+ +.+..|.+..- -
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f-----~~l~~L~~L~Ls~N~i~~~----i~~~~f~~L~~l~~~l~~~~N~l~~l----~ 96 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAF-----SGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKANNLLYI----N 96 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSS-----TTCTTCCEEEEECCTTCCE----ECTTSBCSCTTCCEEEEEEETTCCEE----C
T ss_pred CCCCEEEccCCcCCCcCHHHH-----cCCCCCCEEECcCCCCCCc----cChhHhhcchhhhhhhcccCCccccc----C
Confidence 578888888888764211111 2334788888888876542 11 12455666654 45555666542 1
Q ss_pred HHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCC-CCCChhHHHHHHHHHHhCCCcCEEeccCCCCChh
Q 011480 295 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 373 (484)
Q Consensus 295 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~-n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~ 373 (484)
...+..+++|++|++++|+++.... ..+.....+..|++.+ +.+.......+. .....++.|++++|.++..
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i~~l~~~~f~---~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTCCEECTTSST---TSBSSCEEEECCSSCCCEE
T ss_pred chhhhhccccccccccccccccCCc----hhhcccchhhhhhhccccccccccccchh---hcchhhhhhccccccccCC
Confidence 2234557788888888887765321 1122335667777755 344332211111 1124677888888887654
Q ss_pred HHHHHHHHHHcCCCccEEEecc-CCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh
Q 011480 374 GAEFVADMLRYNNTISILDLRA-NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 430 (484)
Q Consensus 374 ~~~~l~~~l~~~~~L~~L~l~~-n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 430 (484)
....+ ...+|+.+++++ |.++......+.. . ++|+.|++++|+|+..
T Consensus 170 ~~~~f-----~~~~L~~l~l~~~n~l~~i~~~~f~~----l-~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 170 HNSAF-----NGTQLDELNLSDNNNLEELPNDVFHG----A-SGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTSS-----TTEEEEEEECTTCTTCCCCCTTTTTT----E-ECCSEEECTTSCCCCC
T ss_pred Chhhc-----cccchhHHhhccCCcccCCCHHHhcc----C-cccchhhcCCCCcCcc
Confidence 33222 235688888875 5565543222222 1 6788888888887753
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.40 E-value=3.6e-08 Score=82.69 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=5.0
Q ss_pred CCccEEEccCCCC
Q 011480 302 RTITTIDLGGNNI 314 (484)
Q Consensus 302 ~~L~~L~l~~~~l 314 (484)
++|++|++++|++
T Consensus 54 ~~L~~L~Ls~N~l 66 (170)
T 3g39_A 54 TQLTRLDLDNNQL 66 (170)
T ss_dssp TTCSEEECCSSCC
T ss_pred ccCCEEECCCCCc
Confidence 3333333333333
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.39 E-value=2.6e-08 Score=83.55 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh--HHHHH
Q 011480 358 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD--GAFAI 435 (484)
Q Consensus 358 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l 435 (484)
++|++|++++|.++..... .+...++|+.|++++|.++......+.. .++|+.|++++|.++.. .+..+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDNQLKSIPRGAFDN-----LKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSSCBCTTBGGGHHH
T ss_pred ccCCEEECCCCCcCccChh----hccCCCCCCEEECCCCccCEeCHHHhcC-----CCCCCEEEeCCCCCCCCchhHHHH
Confidence 4444444444444432211 1223355666666666555432211111 14566666666665433 34444
Q ss_pred HHHHHhCC
Q 011480 436 AQALKANE 443 (484)
Q Consensus 436 ~~~l~~~~ 443 (484)
...++..+
T Consensus 125 ~~~l~~~~ 132 (170)
T 3g39_A 125 SRWISQHP 132 (170)
T ss_dssp HHHHHHCG
T ss_pred HHHHHhCc
Confidence 44444444
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.35 E-value=4.7e-08 Score=82.24 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=23.5
Q ss_pred CCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChh--HHHHHHHHHH
Q 011480 385 NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALK 440 (484)
Q Consensus 385 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~ 440 (484)
.++|+.|++++|.++......+.. .++|+.|++++|.+... .+..+...+.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDN-----LKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT-----CTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred cchhhEEECCCCccceeCHHHhcc-----ccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 355555555555555422211111 14566666666665432 2344444433
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.22 E-value=8.5e-08 Score=80.66 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=18.0
Q ss_pred CCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCC
Q 011480 358 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 399 (484)
Q Consensus 358 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 399 (484)
++|++|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus 81 ~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCBC
T ss_pred chhhEEECCCCccceeCH----HHhccccCCCEEEeCCCCcc
Confidence 445555555554443211 11233456666666666554
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=0.00012 Score=65.36 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=32.3
Q ss_pred hcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCC
Q 011480 271 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 343 (484)
Q Consensus 271 ~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~ 343 (484)
..+++|+.|+|++|.++.- ..+...+..+++|+.|+|++|.+++.. .+ ..+... +|++|+|++|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSER--EL-DKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCch--hh-hhcccC-CcceEEccCCcCc
Confidence 3455666666666655541 012222334556666666666655431 11 112222 5666666666554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.73 E-value=4.8e-06 Score=78.46 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=26.5
Q ss_pred cceEEEccC-CCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCC
Q 011480 247 KLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 315 (484)
Q Consensus 247 ~L~~L~l~~-~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 315 (484)
+|++|++++ |.+... .+..+..+++|+.|+|++|.++.. ....+..+++|++|+|++|+|+
T Consensus 32 ~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 32 NLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCS
T ss_pred CeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccc
Confidence 455555553 444442 112234444555555555544432 1112333445555555555444
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=2.9e-05 Score=69.30 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=48.6
Q ss_pred CcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHHHHHHHHHHhCCCccEEEccCCCCChh---HHHHH
Q 011480 246 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK---GASAI 322 (484)
Q Consensus 246 ~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~---~~~~l 322 (484)
+.|+.|++++|.+..... ++..+..+++|+.|+|++|.+++. ..+ ..+..+ .|++|++++|.++.. .....
T Consensus 170 ~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i~~~--~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSE--REL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCCCSG--GGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCccCCc--hhh-hhcccC-CcceEEccCCcCccccCcchhHH
Confidence 356666666666655211 333456677788888887777663 111 112222 788888888877641 11223
Q ss_pred HHHhhcCCCcCEEE
Q 011480 323 ARVLKDNSVITSLD 336 (484)
Q Consensus 323 ~~~l~~~~~L~~L~ 336 (484)
...+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 34455567777776
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.71 E-value=6.6e-06 Score=77.53 Aligned_cols=105 Identities=9% Similarity=0.121 Sum_probs=63.0
Q ss_pred ceEEEccCC-CCChhhHHHHHHHHhcCCCCcEEEcCC-CCCCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHH
Q 011480 248 LAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 325 (484)
Q Consensus 248 L~~L~l~~~-~i~~~~~~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 325 (484)
-..++++++ .+.. ++. +..+++|+.|+|++ |.++.. ....+..+++|+.|+|++|+|+... ...
T Consensus 10 ~~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~ 75 (347)
T 2ifg_A 10 SSGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVA----PDA 75 (347)
T ss_dssp SSCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEEC----TTG
T ss_pred CCEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeC----HHH
Confidence 345677776 6665 555 66777788888875 777653 1123455677778888877776532 234
Q ss_pred hhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCC
Q 011480 326 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 371 (484)
Q Consensus 326 l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~ 371 (484)
+..+++|++|+|++|.++...... +. ...|+.|++.+|.+.
T Consensus 76 ~~~l~~L~~L~l~~N~l~~~~~~~----~~-~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFNALESLSWKT----VQ-GLSLQELVLSGNPLH 116 (347)
T ss_dssp GGSCSCCCEEECCSSCCSCCCSTT----TC-SCCCCEEECCSSCCC
T ss_pred hcCCcCCCEEeCCCCccceeCHHH----cc-cCCceEEEeeCCCcc
Confidence 555677777777777665321111 11 123666666666654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.58 E-value=3.7e-07 Score=87.60 Aligned_cols=272 Identities=14% Similarity=0.146 Sum_probs=160.3
Q ss_pred CCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHH
Q 011480 132 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 211 (484)
Q Consensus 132 ~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 211 (484)
+..++.+.+.+. ++..+..+| .. .+|+.+.+..+ +..-+ ..++.. .+|+.+.+..+ +..... .
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF----~~-~~L~~i~l~~~-i~~I~----~~aF~~-~~L~~i~lp~~-l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAF----RN-SQIAKVVLNEG-LKSIG----DMAFFN-STVQEIVFPST-LEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTT----TT-CCCSEEECCTT-CCEEC----TTTTTT-CCCCEEECCTT-CCEECS----S
T ss_pred cCCccEEEECCc-cCEehHhhc----cc-CCccEEEeCCC-ccEEC----HHhcCC-CCceEEEeCCC-ccEehH----H
Confidence 456777777653 333222222 23 36999998776 32211 112333 47999998763 332222 3
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCCCCCcHHH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 291 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 291 (484)
++..|++|+.+++..+.+..-+...+ . ...|+.+.+..+ +...+ ..++..|++|+.+++..+ +..-+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF-----~-~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTF-----V-YAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTT-----T-TCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhhE-----e-ecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCccc
Confidence 46789999999999887655322222 1 248999999765 44321 124678999999999875 322111
Q ss_pred HHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHH-HHHHHhCCCcCEEeccCCCC
Q 011480 292 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL-SEVLKFHGNINTLKLGWCQI 370 (484)
Q Consensus 292 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l-~~~~~~~~~L~~L~l~~~~i 370 (484)
.++.. ..|+.+.+..+ ++..+ ..++..|++|+.+++.++.+.......+ ...+..|++|+.+.+.. .+
T Consensus 243 ----~aF~~-~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred ----ccccc-CCccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 12333 68999999543 44322 2357788999999998876531110000 12345678999999984 35
Q ss_pred ChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEe
Q 011480 371 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 450 (484)
Q Consensus 371 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l 450 (484)
...+..+ +..|.+|+.++|..+ ++..+.. +|.. .+|+.+++.+|.+.......+ ..++ ..+..|
T Consensus 312 ~~I~~~a----F~~c~~L~~l~lp~~-l~~I~~~----aF~~--~~L~~l~l~~n~~~~l~~~~F----~~~~-~~l~~l 375 (401)
T 4fdw_A 312 RILGQGL----LGGNRKVTQLTIPAN-VTQINFS----AFNN--TGIKEVKVEGTTPPQVFEKVW----YGFP-DDITVI 375 (401)
T ss_dssp CEECTTT----TTTCCSCCEEEECTT-CCEECTT----SSSS--SCCCEEEECCSSCCBCCCSSC----CCSC-TTCCEE
T ss_pred EEEhhhh----hcCCCCccEEEECcc-ccEEcHH----hCCC--CCCCEEEEcCCCCcccccccc----cCCC-CCccEE
Confidence 5444333 455799999999665 5443332 2332 379999999987654322222 2222 147788
Q ss_pred eccCCcCch
Q 011480 451 NLANNFLTK 459 (484)
Q Consensus 451 ~l~~n~i~~ 459 (484)
.+..+.+..
T Consensus 376 ~vp~~~~~~ 384 (401)
T 4fdw_A 376 RVPAESVEK 384 (401)
T ss_dssp EECGGGHHH
T ss_pred EeCHHHHHH
Confidence 887765443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.04 E-value=1.1e-05 Score=77.46 Aligned_cols=247 Identities=13% Similarity=0.188 Sum_probs=142.3
Q ss_pred cccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHH
Q 011480 48 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 127 (484)
Q Consensus 48 ~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~ 127 (484)
++.++.+.+.+ .+.... ..++..+ +|+.+.+..+ +...+...| .. .+|+.+.+..+ +..-+. .
T Consensus 112 ~~~l~~i~ip~-~i~~I~----~~aF~~~-~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~~-l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIP----KDAFRNS-QIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPST-LEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCT-TCCEEC----TTTTTTC-CCSEEECCTT-CCEECTTTT----TT-CCCCEEECCTT-CCEECS----S
T ss_pred cCCccEEEECC-ccCEeh----HhhcccC-CccEEEeCCC-ccEECHHhc----CC-CCceEEEeCCC-ccEehH----H
Confidence 35566777764 122211 1223344 6888888765 333222222 22 36888888762 322111 2
Q ss_pred HHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHH
Q 011480 128 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 207 (484)
Q Consensus 128 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 207 (484)
.+..|.+|+.+++.++.++..+...|. +..|+.+.+..+ +..-+ ..++..+++|+.+.+..+ ++..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~- 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQ- 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECT-
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCccc-
Confidence 345578899999988877654433332 467888888754 32111 234566788999988764 222222
Q ss_pred HHHHHhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHH-HHHHHHhcCCCCcEEEcCCCCC
Q 011480 208 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF-HVAEYIKNCKSLLWINLYMNDI 286 (484)
Q Consensus 208 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~-~l~~~l~~~~~L~~L~l~~~~l 286 (484)
.++.. .+|+.+.+..+ +..- .......+.+|+.+++.++.+...... .-..++..|++|+.+++..+ +
T Consensus 243 ---~aF~~-~~L~~i~lp~~-i~~I-----~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 243 ---EAFRE-SGITTVKLPNG-VTNI-----ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp ---TTTTT-CCCSEEEEETT-CCEE-----CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ---ccccc-CCccEEEeCCC-ccEE-----ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence 22334 67888888543 3221 111123445899999888765410000 01224678999999999854 4
Q ss_pred CcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCCh
Q 011480 287 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 344 (484)
Q Consensus 287 ~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~ 344 (484)
..-+ ..++..++.|+.+.+..+ ++..+ ..++..| +|+.+++++|.+..
T Consensus 312 ~~I~----~~aF~~c~~L~~l~lp~~-l~~I~----~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 312 RILG----QGLLGGNRKVTQLTIPAN-VTQIN----FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEEC----TTTTTTCCSCCEEEECTT-CCEEC----TTSSSSS-CCCEEEECCSSCCB
T ss_pred EEEh----hhhhcCCCCccEEEECcc-ccEEc----HHhCCCC-CCCEEEEcCCCCcc
Confidence 3321 123556789999999665 44322 2356778 99999999986543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.82 E-value=5.5e-06 Score=79.54 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHcccceEEeCCCCCCChhHHHHHHHHhccCCCcceEecccC
Q 011480 45 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN 87 (484)
Q Consensus 45 ~~~~~~l~~L~ls~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 87 (484)
+..+++|+++.+... +...+ ..++..|++|+.+++..+
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIG----EFAFENCSKLEIINIPDS 104 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEEC----TTTTTTCTTCCEECCCTT
T ss_pred hhCCCCceEEEeCCC-ccCcc----hhHhhCCCCCcEEEeCCC
Confidence 344566666666531 22211 123455666666666543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.42 E-value=2e-06 Score=82.65 Aligned_cols=308 Identities=13% Similarity=0.164 Sum_probs=135.6
Q ss_pred HhccCCCcceEecccCCCCHHHHHHHHHHhhcCCCCCEEecCCCCCChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHH
Q 011480 72 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 151 (484)
Q Consensus 72 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 151 (484)
++..|.+|+++.+... ++.-+- .++..|.+|+.+++..+ +..-+. ..+..|..|+.+.+..+ +...+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGR----CTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccc----hhhcccccchhhcccCc-eeeecce
Confidence 4567889999998753 332221 23556788999999754 221111 12344666776655433 2211111
Q ss_pred HHHHHHhcCCCccEEEccCCC-CCchHHHHHHHHHhcCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcCEEEccCCCCC
Q 011480 152 AIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 230 (484)
Q Consensus 152 ~l~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 230 (484)
+ +..+..+......... +. ..++..+++|+.+.+..+... ... .++..+.+|+.+.+..+ +.
T Consensus 135 a----F~~~~~~~~~~~~~~~~i~-------~~aF~~c~~L~~i~l~~~~~~-I~~----~~F~~c~~L~~i~l~~~-~~ 197 (394)
T 4fs7_A 135 A----FKGCDFKEITIPEGVTVIG-------DEAFATCESLEYVSLPDSMET-LHN----GLFSGCGKLKSIKLPRN-LK 197 (394)
T ss_dssp T----TTTCCCSEEECCTTCCEEC-------TTTTTTCTTCCEEECCTTCCE-ECT----TTTTTCTTCCBCCCCTT-CC
T ss_pred e----eecccccccccCccccccc-------hhhhcccCCCcEEecCCccce-ecc----ccccCCCCceEEEcCCC-ce
Confidence 1 1122222222111111 11 123445666777766543211 110 23455666666666543 11
Q ss_pred hhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC--CCCcHHHHHHHHHHHhCCCccEEE
Q 011480 231 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTID 308 (484)
Q Consensus 231 ~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~--~l~~~~~~~l~~~l~~~~~L~~L~ 308 (484)
. +.......+..|+.+.+..+...-. .....+..|+.+.+... .+.+. .+..+..++.+.
T Consensus 198 ~-----I~~~~F~~~~~L~~i~~~~~~~~i~------~~~~~~~~l~~i~ip~~~~~i~~~-------~f~~~~~l~~~~ 259 (394)
T 4fs7_A 198 I-----IRDYCFAECILLENMEFPNSLYYLG------DFALSKTGVKNIIIPDSFTELGKS-------VFYGCTDLESIS 259 (394)
T ss_dssp E-----ECTTTTTTCTTCCBCCCCTTCCEEC------TTTTTTCCCCEEEECTTCCEECSS-------TTTTCSSCCEEE
T ss_pred E-----eCchhhccccccceeecCCCceEee------hhhcccCCCceEEECCCceecccc-------cccccccceeEE
Confidence 1 0001111222455554443321110 01123345666655432 12211 123445666666
Q ss_pred ccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCc
Q 011480 309 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 388 (484)
Q Consensus 309 l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L 388 (484)
+..+...-. ...+..+..++.+.+....+.+. .+..+.+|+.+.+..+ +...+.. ++..|.+|
T Consensus 260 ~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~~-------~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L 322 (394)
T 4fs7_A 260 IQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPEK-------TFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSL 322 (394)
T ss_dssp ECCTTCEEC-----SCTTTTCTTCCEEEECSSEECTT-------TTTTCTTCCEEEECTT-CCEECTT----TTTTCTTC
T ss_pred cCCCcceee-----ccccccccccceeccCceeeccc-------cccccccccccccccc-cceechh----hhcCCCCC
Confidence 654422110 11234455666665554433221 1234566666666543 2222222 23445667
Q ss_pred cEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCCCChhHHHHHHHHHHhCCccceeEeeccCC
Q 011480 389 SILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 455 (484)
Q Consensus 389 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~~L~~l~l~~n 455 (484)
+.+++..+ ++..+...+... .+|+.+++..+ ++..+..++ ..|.+ |+.+++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF----~~C~~--L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGC-----TSLSNINFPLS-LRKIGANAF----QGCIN--LKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTC-----TTCCEECCCTT-CCEECTTTB----TTCTT--CCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCC-----CCCCEEEECcc-ccEehHHHh----hCCCC--CCEEEECCC
Confidence 77776543 433332222211 56777777654 444433333 33343 677766543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.92 E-value=0.00052 Score=65.65 Aligned_cols=312 Identities=11% Similarity=0.171 Sum_probs=156.9
Q ss_pred HHcc-cceEEeCCC--CCCChhHHHHHHHHhccCCCcceEecccCC---CCHHHHHHHHHHhhcCCCCCEEecCCC--CC
Q 011480 46 KELR-AFSSVDMSG--RNFGDEGLFFLAESLGYNQTAEEVSFAANG---ITAAGIKAFDGVLQSNIALKTLNLSGN--PI 117 (484)
Q Consensus 46 ~~~~-~l~~L~ls~--~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---l~~~~~~~l~~~l~~~~~L~~L~L~~~--~i 117 (484)
..++ .|+++.+.. ..|++ .++..|.+|+.+.+..+. ++.-+.. ++..|..|+.+.+..+ .+
T Consensus 60 ~~~~~~L~sI~iP~svt~Ig~-------~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----aF~~c~~L~~i~~~~~~~~I 128 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDTVTEIGS-------NAFYNCTSLKRVTIQDNKPSCVKKIGRQ----AFMFCSELTDIPILDSVTEI 128 (394)
T ss_dssp TTCCSCCCEEEECTTCCEECT-------TTTTTCTTCCEEEEGGGCCCCCCEECTT----TTTTCTTCCBCGGGTTCSEE
T ss_pred cCCCCcCEEEEECCCeeEEhH-------HHhhCCccCceEeecCCCCCeeeEechh----hchhcccceeeccCCcccee
Confidence 4453 488888865 23333 345678899999887652 3222212 2445667887777653 12
Q ss_pred ChhHHHHHHHHHHhCCCcCEEEeeccCCChHHHHHHHHHHhcCCCccEEEccCCCCCchHHHHHHHHHhcCCCccEEEcC
Q 011480 118 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 197 (484)
Q Consensus 118 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~l~ 197 (484)
+. ..+..|.+|+.+.+.... ...+. ..+..+..|+.+.+..+- .. +.........|+.+.+.
T Consensus 129 ~~-------~aF~~c~~L~~i~lp~~~-~~I~~----~~F~~c~~L~~i~~~~~~-~~-----I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 129 DS-------EAFHHCEELDTVTIPEGV-TSVAD----GMFSYCYSLHTVTLPDSV-TA-----IEERAFTGTALTQIHIP 190 (394)
T ss_dssp CT-------TTTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCEEECCTTC-CE-----ECTTTTTTCCCSEEEEC
T ss_pred hh-------hhhhhhccccccccccee-eeecc----cceeccccccccccccee-eE-----eccccccccceeEEEEC
Confidence 21 233456788888886532 21111 123456778888886542 11 11112234578888776
Q ss_pred CCCCChHHHHHHHHHhhcCCCcCEEEccCCCCChhHHHHHHHh-------h--ccCCCcceEEEccCCCCChhhHHHHHH
Q 011480 198 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG-------L--SSRKGKLAVLDIGNNSISAKGAFHVAE 268 (484)
Q Consensus 198 ~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-------l--~~~~~~L~~L~l~~~~i~~~~~~~l~~ 268 (484)
..... .+. .++..+..++............+-. +... + ......+..+.+... +...+ ..
T Consensus 191 ~~~~~-i~~----~af~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~----~~ 259 (394)
T 4gt6_A 191 AKVTR-IGT----NAFSECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE----TH 259 (394)
T ss_dssp TTCCE-ECT----TTTTTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC----TT
T ss_pred Ccccc-ccc----chhhhccccceecccccccccccce-eecccccccccccccccccccceEEcCCc-ceEcc----cc
Confidence 54211 111 3345677777766554322110000 0000 0 000012233333221 11100 12
Q ss_pred HHhcCCCCcEEEcCCCC--CCcHHHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhH
Q 011480 269 YIKNCKSLLWINLYMND--IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 346 (484)
Q Consensus 269 ~l~~~~~L~~L~l~~~~--l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~ 346 (484)
++..|..|+.+.+..+. +.+ .++..+..|+.+.+... ++..+. .++..|.+|+.++|..+ ++..+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~-------~aF~~c~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT-------GAFMNCPALQDIEFSSR-ITELPE----SVFAGCISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT-------TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEECCTT-CCEEC
T ss_pred eeeecccccEEecccccceecC-------cccccccccccccCCCc-ccccCc----eeecCCCCcCEEEeCCc-ccEeh
Confidence 35678889998887652 222 13456788999888643 333221 34677899999999764 32222
Q ss_pred HHHHHHHHHhCCCcCEEeccCCCCChhHHHHHHHHHHcCCCccEEEeccCCCCchhHHHHHHHHHhcCccccEEEcCCCC
Q 011480 347 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 426 (484)
Q Consensus 347 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 426 (484)
. ..+..|.+|+.+.+..+ ++..+.. ++..|.+|+.+++.++... + ..+. ....|+.+.+..+.
T Consensus 327 ~----~aF~~C~~L~~i~ip~s-v~~I~~~----aF~~C~~L~~i~~~~~~~~------~-~~~~-~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 327 D----DAFAGCEQLERIAIPSS-VTKIPES----AFSNCTALNNIEYSGSRSQ------W-NAIS-TDSGLQNLPVAPGS 389 (394)
T ss_dssp T----TTTTTCTTCCEEEECTT-CCBCCGG----GGTTCTTCCEEEESSCHHH------H-HTCB-CCCCC---------
T ss_pred H----hHhhCCCCCCEEEECcc-cCEEhHh----HhhCCCCCCEEEECCceee------h-hhhh-ccCCCCEEEeCCCC
Confidence 1 23456789999999654 4433333 3566799999999876321 1 1222 23678888887664
Q ss_pred C
Q 011480 427 I 427 (484)
Q Consensus 427 i 427 (484)
+
T Consensus 390 ~ 390 (394)
T 4gt6_A 390 I 390 (394)
T ss_dssp -
T ss_pred E
Confidence 3
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.34 E-value=0.3 Score=46.24 Aligned_cols=128 Identities=10% Similarity=0.169 Sum_probs=70.8
Q ss_pred HhhcCCCcCEEEccCCCCChhHHHHHHHhhccCCCcceEEEccCCCCChhhHHHHHHHHhcCCCCcEEEcCCC--CCCcH
Q 011480 212 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDE 289 (484)
Q Consensus 212 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~l~~~~~L~~L~l~~~--~l~~~ 289 (484)
++..|..|+.+.+...... +.......+..|+.+.+... +...+ ..++..|.+|+.+++..+ .+.+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~------I~~~aF~~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS------IGTGAFMNCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEGITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE------ECTTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTTCCEECTT
T ss_pred eeeecccccEEecccccce------ecCcccccccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCcccEehHh
Confidence 4567888888888654221 11111123447888888643 33211 124667888999988764 23332
Q ss_pred HHHHHHHHHHhCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCC
Q 011480 290 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 369 (484)
Q Consensus 290 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 369 (484)
++..|.+|+.+.+..+ ++..+. .++..|.+|+.+++.++.. . ...+..+..|+.+.+..+.
T Consensus 329 -------aF~~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~------~-~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 -------AFAGCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRS------Q-WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp -------TTTTCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHH------H-HHTCBCCCCC---------
T ss_pred -------HhhCCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCcee------e-hhhhhccCCCCEEEeCCCC
Confidence 3566788999988654 333221 3577789999999887631 1 1334457788888877654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.69 E-value=0.49 Score=36.68 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=6.3
Q ss_pred CCccEEEeccCCC
Q 011480 386 NTISILDLRANGL 398 (484)
Q Consensus 386 ~~L~~L~l~~n~i 398 (484)
++|+.|+|.+|.+
T Consensus 55 ~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 55 PALRTAHLGANPW 67 (130)
T ss_dssp TTCCEEECCSSCC
T ss_pred cccCEEEecCCCe
Confidence 4455555555533
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.05 E-value=0.62 Score=36.07 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCC
Q 011480 302 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 342 (484)
Q Consensus 302 ~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i 342 (484)
.+|++|+|++|+|+.... ..+...++|+.|+|++|++
T Consensus 31 ~~l~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPP----GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCT----TTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccCh----hhhhhccccCEEEecCCCe
Confidence 356666666666554221 2234446666666666655
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.92 E-value=0.16 Score=47.75 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=36.0
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHhhcCCCcCEEECCCCCCChhHHHHHHHHHHhCCCcCEEeccCCCCChhHHHHHH
Q 011480 300 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 379 (484)
Q Consensus 300 ~~~~L~~L~l~~~~l~~~~~~~l~~~l~~~~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 379 (484)
.+..|+.+.+..+ ++..+. .++..+.+|+.+.+..+ +...+. ..+..|++|+.+.+.++.++..+..
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~----~aF~~~~~l~~i~l~~~-i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~~--- 304 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGS----FLLQNCTALKTLNFYAK-VKTVPY----LLCSGCSNLTKVVMDNSAIETLEPR--- 304 (379)
T ss_dssp TCSSCCEEEECTT-CCEECT----TTTTTCTTCCEEEECCC-CSEECT----TTTTTCTTCCEEEECCTTCCEECTT---
T ss_pred CCccceEEEcCCC-ccEeCc----cccceeehhcccccccc-ceeccc----cccccccccccccccccccceehhh---
Confidence 4556666666543 222111 12444566666665433 111111 1123345566665555544332222
Q ss_pred HHHHcCCCccEEEecc
Q 011480 380 DMLRYNNTISILDLRA 395 (484)
Q Consensus 380 ~~l~~~~~L~~L~l~~ 395 (484)
++..|.+|+.++|..
T Consensus 305 -aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 305 -VFMDCVKLSSVTLPT 319 (379)
T ss_dssp -TTTTCTTCCEEECCT
T ss_pred -hhcCCCCCCEEEcCc
Confidence 233345555555543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=66.50 E-value=0.29 Score=46.07 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=18.0
Q ss_pred HHHcccceEEeCCC--CCCChhHHHHHHHHhccCCCcceEeccc
Q 011480 45 AKELRAFSSVDMSG--RNFGDEGLFFLAESLGYNQTAEEVSFAA 86 (484)
Q Consensus 45 ~~~~~~l~~L~ls~--~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 86 (484)
+....+|+++.+.. ..|++ .++..|.+|+.+++..
T Consensus 42 ~~~~~~i~~v~ip~~vt~Ig~-------~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 42 YKDRDRISEVRVNSGITSIGE-------ANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGGGGGCSEEEECTTEEEECT-------TTTTTCTTCCEEEECT
T ss_pred cccccCCEEEEeCCCccChHH-------HHhhCCCCCCEEEeCC
Confidence 33445566666653 22232 2345566666666654
Done!