BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011482
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 156/401 (38%), Gaps = 76/401 (18%)
Query: 132 TLNYIATIE----LGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVL 187
TL Y+ TI L N+ +VD G WV C +S +Y+ V
Sbjct: 19 TLQYVTTINQRTPLVSENL--VVDLGGRFLWVDCD-------------QNYVSSTYRPVR 63
Query: 188 CNSSTCH-ALEFATGNSGVCSSSSPPDCNY----------FVSYGDGSYTXXXXXXXXXX 236
C +S C + A G+ C + P CN ++ G
Sbjct: 64 CRTSQCSLSGSIACGD---CFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 237 XXKAS-----VNDFIFGCGRNN--KGLFGGVSGLMGLGRSDLSLVSQTSEIFG--GLFSY 287
+S V FIF C + + L GV G+ GLGR+ ++L SQ + F F+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 288 CLPSTQDAGASGSLILGGNS------SVFKNSTPITYTNMIPNP----------QLATFY 331
CL + +S S+I+ GN ++ + +TYT ++ NP + + Y
Sbjct: 181 CL---SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 332 ILNLTGISIGGK-------QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSG 384
+ + I I K L S GG I + T L SIY A+ F+K+ +
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA 297
Query: 385 --FPSAPGFSILDTCFN----LSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQ 438
+ CF+ LS ++P + + + + + +TG V + +
Sbjct: 298 RNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNSMVYINDNV 356
Query: 439 VCLALASLSYEDETGI-IGNYQQKNQRVIYDTKNSQLGFAG 478
VCL + T I IG +Q ++ V +D S++GF+G
Sbjct: 357 VCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSG 397
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 156/401 (38%), Gaps = 76/401 (18%)
Query: 132 TLNYIATIE----LGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVL 187
TL Y+ TI L N+ +VD G WV C +S +Y+ V
Sbjct: 19 TLQYVTTINQRTPLVSENL--VVDLGGRFLWVDCD-------------QNYVSSTYRPVR 63
Query: 188 CNSSTCH-ALEFATGNSGVCSSSSPPDCNY----------FVSYGDGSYTXXXXXXXXXX 236
C +S C + A G+ C + P CN ++ G
Sbjct: 64 CRTSQCSLSGSIACGD---CFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 237 XXKAS-----VNDFIFGCGRNN--KGLFGGVSGLMGLGRSDLSLVSQTSEIFG--GLFSY 287
+S V FIF C + + L GV G+ GLGR+ ++L SQ + F F+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 288 CLPSTQDAGASGSLILGGNS------SVFKNSTPITYTNMIPNP----------QLATFY 331
CL + +S S+I+ GN ++ + +TYT ++ NP + + Y
Sbjct: 181 CL---SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEY 237
Query: 332 ILNLTGISIGGK-------QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSG 384
+ + I I K L S GG I + T L SIY A+ F+K+ +
Sbjct: 238 FIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAA 297
Query: 385 --FPSAPGFSILDTCFN----LSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQ 438
+ CF+ LS ++P + + + + + +TG V + +
Sbjct: 298 RNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNSMVYINDNV 356
Query: 439 VCLALASLSYEDETGI-IGNYQQKNQRVIYDTKNSQLGFAG 478
VCL + T I IG +Q ++ V +D S++GF+G
Sbjct: 357 VCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSG 397
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 44/266 (16%)
Query: 241 SVNDFIFGCGRN---NKGLFGGVSGLMGLGRSDLSLVSQTSEIFG--GLFSYCLPSTQDA 295
+V F+F C + KGL G+ GLG + +SL +Q + FG F+ CL ++
Sbjct: 133 TVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCL--SRYP 190
Query: 296 GASGSLILG---GNSSVFKNS--------TPITYT---------NMIPNPQLATFYILNL 335
+ G++I G N F+N TP+T T N I Q + F + +
Sbjct: 191 TSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKI 250
Query: 336 TGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILD 395
+ +G GG +I + T L S+Y A F +Q +
Sbjct: 251 SSTIVGS--------TSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFG 302
Query: 396 TCFN---LSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDET 452
CFN ++AY P V + + ++G V++ CL + + +
Sbjct: 303 LCFNSNKINAY-----PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRA 357
Query: 453 GI-IGNYQQKNQRVIYDTKNSQLGFA 477
I +G Q + V++D S++GF+
Sbjct: 358 EITLGARQLEENLVVFDLARSRVGFS 383
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 84/382 (21%)
Query: 121 EIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPS 178
++PLT+ + Q Y I LG +N VI+DTGS WV C S +D
Sbjct: 4 DVPLTNYLNAQ---YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHE 60
Query: 179 ISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXX 237
S SYK + T A+++ TG+ G S + +S GD
Sbjct: 61 ASSSYKA----NGTEFAIQYGTGSLEGYISQDT-------LSIGD--------------- 94
Query: 238 XKASVNDFIFGCGRNNKGL---FGGVSGLMGLGRSDLSLVSQTSEIFGGL---------F 285
++ F + GL FG G++GLG +S+ + + F
Sbjct: 95 --LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRF 152
Query: 286 SYCLPST-QDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK 343
++ L T +D G GG + S FK IT+ + + ++ + GI +G +
Sbjct: 153 AFYLGDTSKDTENGGEATFGGIDESKFKGD--ITWLPV----RRKAYWEVKFEGIGLGDE 206
Query: 344 --QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEF--LKQFSGFPSAPGFSILDTCFN 399
+L++ G A ID+GT + LP + + AE K ++G +
Sbjct: 207 YAELESHGAA-----IDTGTSLITLPSGLAEMINAEIGAKKGWTG------------QYT 249
Query: 400 LSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCL-ALASLSYEDETG---II 455
L N+P + F G + T Y + S C+ A+ + + + G I+
Sbjct: 250 LDCNTRDNLPDLIFNFNG-----YNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIV 304
Query: 456 GNYQQKNQRVIYDTKNSQLGFA 477
G+ + IYD N+ +G A
Sbjct: 305 GDAFLRKYYSIYDIGNNAVGLA 326
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 149/382 (39%), Gaps = 84/382 (21%)
Query: 121 EIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPS 178
++PLT+ + Q Y I LG +N VI+DTGS WV C S +D
Sbjct: 4 DVPLTNYLNAQ---YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHE 60
Query: 179 ISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXX 237
S SYK + T A+++ TG+ G S + +S GD
Sbjct: 61 ASSSYKA----NGTEFAIQYGTGSLEGYISQDT-------LSIGD--------------- 94
Query: 238 XKASVNDFIFGCGRNNKGL---FGGVSGLMGLGRSDLSLVSQTSEIFGGL---------F 285
++ F + GL FG G++GLG +S+ + + F
Sbjct: 95 --LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRF 152
Query: 286 SYCLPST-QDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK 343
++ L T +D G GG + S FK IT+ + + ++ + GI +G +
Sbjct: 153 AFYLGDTSKDTENGGEATFGGIDESKFKGD--ITWLPV----RRKAYWEVKFEGIGLGDE 206
Query: 344 --QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEF--LKQFSGFPSAPGFSILDTCFN 399
+L++ G A ID+GT + LP + + AE K ++G +
Sbjct: 207 YAELESHGAA-----IDTGTSLITLPSGLAEMINAEIGAKKGWTG------------QYT 249
Query: 400 LSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCL-ALASLSYEDETG---II 455
L N+P + F G + T Y + S C+ A+ + + + G I+
Sbjct: 250 LDCNTRDNLPDLIFNFNG-----YNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIV 304
Query: 456 GNYQQKNQRVIYDTKNSQLGFA 477
G+ + IYD N+ +G A
Sbjct: 305 GDAFLRKYYSIYDLGNNAVGLA 326
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 61/276 (22%)
Query: 121 EIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPS 178
++PLT+ + Q Y I LG +N VI+DTGS WV C S +D
Sbjct: 4 DVPLTNYLNAQ---YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHE 60
Query: 179 ISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXX 237
S SYK + T A+++ TG+ G S + +S GD
Sbjct: 61 ASSSYKA----NGTEFAIQYGTGSLEGYISQDT-------LSIGD--------------- 94
Query: 238 XKASVNDFIFGCGRNNKGL---FGGVSGLMGLGRSDLSLVSQTSEIFGGL---------F 285
++ F + GL FG G++GLG +S+ + + F
Sbjct: 95 --LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRF 152
Query: 286 SYCLPST-QDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK 343
++ L T +D G GG + S FK IT+ + + ++ + GI +G +
Sbjct: 153 AFYLGDTSKDTENGGEATFGGIDESKFKGD--ITWLPV----RRKAYWEVKFEGIGLGDE 206
Query: 344 --QLQASGFAKGGILIDSGTVITRLPPSIYSALKAE 377
+L++ G A ID+GT + LP + + AE
Sbjct: 207 YAELESHGAA-----IDTGTSLITLPSGLAEMINAE 237
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 111
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 112 SQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 150
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 151 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 207
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 208 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 259
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 260 TGTSLLTGPTSAIANIQSD 278
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 68 SQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 106
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 107 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 163
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 164 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 215
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 216 TGTSLLTGPTSAIANIQSD 234
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 111
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 112 XQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 150
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 151 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 207
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 208 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 259
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 260 TGTSLLTGPTSAIANIQSD 278
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 68 SQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 106
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 107 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 163
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 164 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 215
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 216 TGTSLLTGPTSAIANIQSD 234
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 68 SQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 106
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 107 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 163
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 164 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 215
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 216 TGTSLLTGPTSAIANIQSD 234
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 68 XQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 106
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 107 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 163
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 164 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 215
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 216 TGTSLLTGPTSAIANIQSD 234
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y TI +G ++ TVI DTGS WV C S F+P S +++ +T
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFE------AT 67
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
L ++YG GS T + N IFG
Sbjct: 68 XQELS--------------------ITYGTGSMTGILGYDTVQVGGISDTNQ-IFGLSET 106
Query: 253 NKGLF---GGVSGLMGLGRSDLSLVSQTSEIFGG----------LFSYCLPSTQDAGASG 299
G F G++GL +S S + +F LFS L S D+G+
Sbjct: 107 EPGSFLYYAPFDGILGLAYPSIS-ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS-- 163
Query: 300 SLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358
++LGG +SS + S N +P + ++ + L I++ G+ + SG + ++D
Sbjct: 164 VVLLGGIDSSYYTGS-----LNWVP-VSVEGYWQITLDSITMDGETIACSGGCQA--IVD 215
Query: 359 SGTVITRLPPSIYSALKAE 377
+GT + P S + ++++
Sbjct: 216 TGTSLLTGPTSAIANIQSD 234
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 94/256 (36%), Gaps = 52/256 (20%)
Query: 128 IRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKK 185
I + Y TI +G +N TVI DTGS WV C S + F PS S +Y +
Sbjct: 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQ 77
Query: 186 VLCNSSTCHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDF 245
P ++ + YG GS + V
Sbjct: 78 --------------------------PGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQ- 110
Query: 246 IFGCGRNNKG---LFGGVSGLMGLGRSDLSLVSQTSEIFGGL----------FSYCLPST 292
FG G + G++GLG L+ V + +F + FS + S
Sbjct: 111 QFGESVTEPGQTFVDAEFDGILGLGYPSLA-VGGVTPVFDNMMAQNLVDLPMFSVYMSSN 169
Query: 293 QDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFA 351
+ GA LI GG + S F S N +P + A ++ + L I +GG + S
Sbjct: 170 PEGGAGSELIFGGYDHSHFSGS-----LNWVPVTKQA-YWQIALDNIQVGGTVMFCSEGC 223
Query: 352 KGGILIDSGTVITRLP 367
+ ++D+GT + P
Sbjct: 224 QA--IVDTGTSLITGP 237
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 289 LPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK--QL 345
LP GSL+LGG S++K I YT + + +Y + + + IGG+ L
Sbjct: 160 LPVAGSGTNGGSLVLGGIEPSLYKGD--IWYTPI----KEEWYYQIEILKLEIGGQSLNL 213
Query: 346 QASGFAKGGILIDSGTVITRLPPSIYSAL-----KAEFLKQFS-GFPSAPGFSILDTCFN 399
+ ++DSGT + RLP ++ A+ +A + +FS GF + + C+
Sbjct: 214 DCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLA----CWT 269
Query: 400 LSAYQEVNIPLVKMEF-EGNAEMTVDVTGIVYFVKSDASQVCLALASLSYE--------- 449
S P + + + N+ + +T + + A L+YE
Sbjct: 270 NSETPWSYFPKISIYLRDENSSRSFRIT-----ILPQLYIQPMMGAGLNYECYRFGISPS 324
Query: 450 DETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCSSM 484
+IG + VI+D ++GFA C+ +
Sbjct: 325 TNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 46/233 (19%)
Query: 261 SGLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVFK 311
G++GLG DLS+ + + ++I LF++ LP D G L +GG S F
Sbjct: 121 DGILGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYLP-VHDKHV-GYLTIGGIESDFY 178
Query: 312 NSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIY 371
P+TY + N L ++ ++L I G +Q K ++DSGT P S
Sbjct: 179 EG-PLTYEKL--NHDL--YWQIDL-DIHFGKYVMQ-----KANAVVDSGTSTITAPTSFL 227
Query: 372 SALKAEFLKQFS--GFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNA-----EMTVD 424
+ +F + + P P + + TC N ++P ++ N E +D
Sbjct: 228 N----KFFRDMNVIKVPFLPLY--VTTCDN------DDLPTLEFHSRNNKYTLEPEFYMD 275
Query: 425 VTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ D + L + + +D T I+G+ + ++D + +GFA
Sbjct: 276 PLSDI-----DPALCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGFA 323
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 143/369 (38%), Gaps = 56/369 (15%)
Query: 122 IPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQ--CQPCKSCYNQQDPVFDP 177
+P+T + + + Y A I +G N + VIVDTGS WV C+ Y+ Q F
Sbjct: 3 VPVT--LHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADF-- 58
Query: 178 SISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPDCN--YFVSYGDGSYTXXXXXXXXX 235
C G SS+ D N + + YGDGS +
Sbjct: 59 ---------------CKQ----KGTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTV 99
Query: 236 XXXKASVNDFIFGCGRN---NKGLFG-GVSGLMGLGRSDLSLVSQTSEIFGGLFSYCLPS 291
S+ + + + ++G+ G G G D V+ + +Y L
Sbjct: 100 GFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYL 159
Query: 292 TQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFA 351
A+G +I GG + K S + + + +L ++L + + GK +
Sbjct: 160 NSPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELR----ISLGSVEVSGKTINTDNV- 213
Query: 352 KGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPL- 410
+L+DSGT IT L L + +K F+G L N +++ EV+ L
Sbjct: 214 --DVLLDSGTTITYLQQD----LADQIIKAFNG--------KLTQDSNGNSFYEVDCNLS 259
Query: 411 --VKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYD 468
V F NA+++V + ++ D Q L ++ I+G+ ++ ++YD
Sbjct: 260 GDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYD 319
Query: 469 TKNSQLGFA 477
++++ A
Sbjct: 320 LDDNEISLA 328
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 260 VSGLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVF 310
V G+ GLG DLS+ + ++I ++S LP + G L +GG F
Sbjct: 124 VDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPP--ENKNKGYLTIGGIEERF 181
Query: 311 KNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSI 370
+ P+ Y + N L L++ ++ K K +++DS T + +P
Sbjct: 182 FDG-PLNYEKL--NHDLMWQVDLDVHFGNVSSK--------KANVILDSATSVITVP--- 227
Query: 371 YSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEV--NIPLVKMEFEG-NAEMTVDVTG 427
EF QF S+ F LS Y N L +E+ N T++
Sbjct: 228 -----TEFFNQF-----VESASVFKVPF-LSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQ 276
Query: 428 IVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ +++ S +C L + + E T ++G+ + +YD N +GFA
Sbjct: 277 YLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFA 327
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 122 IPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKS--CYNQQDPVFDP 177
+PLT+ + Q Y I LG + TV+ DTGS WV CKS C N Q FDP
Sbjct: 6 VPLTNYLDSQ---YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR--FDP 60
Query: 178 SISPSYKKV 186
S +++ +
Sbjct: 61 RKSSTFQNL 69
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 260 VSGLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVF 310
V G+ GLG DLS+ + ++I ++S LP + G L +GG F
Sbjct: 243 VDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPP--ENKNKGYLTIGGIEERF 300
Query: 311 KNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSI 370
+ P+ Y + N L L++ ++ K K +++DS T + +P
Sbjct: 301 FDG-PLNYEKL--NHDLMWQVDLDVHFGNVSSK--------KANVILDSATSVITVP--- 346
Query: 371 YSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEV--NIPLVKMEFEG-NAEMTVDVTG 427
EF QF S+ F LS Y N L +E+ N T++
Sbjct: 347 -----TEFFNQF-----VESASVFKVPF-LSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQ 395
Query: 428 IVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ +++ S +C L + + E T ++G+ + +YD N +GFA
Sbjct: 396 YLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFA 446
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 130 LQTLNYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCN 189
LQ L+Y+ +EL R+MTV++ + W + + +PV DP+++ ++ +
Sbjct: 110 LQGLDYL-LVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAK 168
Query: 190 SSTCHALEFA 199
S++ + E A
Sbjct: 169 SASFYRSEKA 178
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 122 IPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKS--CYNQQDPVFDP 177
+PLT+ + Q Y I LG + TV+ DTGS WV CKS C N Q FDP
Sbjct: 6 VPLTNYLDSQ---YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR--FDP 60
Query: 178 SISPSYKKV 186
S +++ +
Sbjct: 61 RKSSTFQNL 69
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 123 PLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSIS 180
PLTS + Q Y I +G + TV+ DTGS WV CKS + FDP S
Sbjct: 4 PLTSYLDSQ---YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKS 60
Query: 181 PSYKKV 186
+++ +
Sbjct: 61 STFRNL 66
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 131/346 (37%), Gaps = 61/346 (17%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNS 203
+ +I DTGS WV + C S ++D S S SY+K
Sbjct: 75 QKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK------------------ 116
Query: 204 GVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRNN-KGLFGGVS- 261
+ D ++YG G+ + FI ++ + ++ V
Sbjct: 117 ----DGTKVD----ITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEF 168
Query: 262 -GLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVFK 311
G++GLG DLS+ + ++I LF++ LP D A G L +GG F
Sbjct: 169 DGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP-VHDVHA-GYLTIGGIEEKFY 226
Query: 312 NSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIY 371
ITY + N L ++ ++L + G + ++ K +++DSGT P
Sbjct: 227 EGN-ITYEKL--NHDL--YWQIDL-DVHFGKQTME-----KANVIVDSGTTTITAP---- 271
Query: 372 SALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYF 431
+EFL +F F + + F ++ +P ++ + N +
Sbjct: 272 ----SEFLNKF--FANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPI 325
Query: 432 VKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
++ D + + + + + T I+G+ + ++D +GFA
Sbjct: 326 LEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFA 371
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 368 PSIYSALKAEFLKQFSGFPSAPGFSILDTCF 398
PSI LK + + ++G P+APG S++ C+
Sbjct: 97 PSIKRTLKTDLIAAYAGDPAAPGLSLIIRCY 127
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 368 PSIYSALKAEFLKQFSGFPSAPGFSILDTCF 398
PSI LK + + ++G P+APG S++ C+
Sbjct: 98 PSIKRTLKTDLIAAYAGDPAAPGLSLIIRCY 128
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 131/346 (37%), Gaps = 61/346 (17%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNS 203
+ +I DTGS WV + C S ++D S S SY+K
Sbjct: 29 QKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEK------------------ 70
Query: 204 GVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRNN-KGLFGGVS- 261
+ D ++YG G+ + FI ++ + ++ V
Sbjct: 71 ----DGTKVD----ITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVIDTDDLEPIYSSVEF 122
Query: 262 -GLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVFK 311
G++GLG DLS+ + ++I LF++ LP D A G L +GG F
Sbjct: 123 DGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP-VHDVHA-GYLTIGGIEEKFY 180
Query: 312 NSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIY 371
ITY + N L ++ ++L + G + ++ K +++DSGT P
Sbjct: 181 EGN-ITYEKL--NHDL--YWQIDL-DVHFGKQTME-----KANVIVDSGTTTITAP---- 225
Query: 372 SALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYF 431
+EFL +F F + + F ++ +P ++ + N +
Sbjct: 226 ----SEFLNKF--FANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPI 279
Query: 432 VKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
++ D + + + + + T I+G+ + ++D +GFA
Sbjct: 280 LEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFA 325
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 368 PSIYSALKAEFLKQFSGFPSAPGFSILDTCF 398
PSI LK + + ++G P+APG S++ C+
Sbjct: 99 PSIKRTLKTDLIAAYAGDPAAPGLSLIIRCY 129
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 142/369 (38%), Gaps = 56/369 (15%)
Query: 122 IPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQ--PCKSCYNQQDPVFDP 177
+P+T + + + Y A I +G N + VIVDTGS WV C+ Y+ Q F
Sbjct: 3 VPVT--LHNEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADF-- 58
Query: 178 SISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPDCN--YFVSYGDGSYTXXXXXXXXX 235
C G SS+ D N + + YGDGS +
Sbjct: 59 ---------------CKQ----KGTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTV 99
Query: 236 XXXKASVNDFIFGCGRN---NKGLFG-GVSGLMGLGRSDLSLVSQTSEIFGGLFSYCLPS 291
S+ + + + ++G+ G G G D V+ + +Y L
Sbjct: 100 GFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYL 159
Query: 292 TQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFA 351
A+G +I GG + K S + + + +L ++L + + GK +
Sbjct: 160 NSPDSATGQIIFGGVDNA-KYSGSLIALPVTSDRELR----ISLGSVEVSGKTINTDNV- 213
Query: 352 KGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPL- 410
+L+DSGT IT L L + +K F+G L N +++ EV+ L
Sbjct: 214 --DVLLDSGTTITYLQQD----LADQIIKAFNG--------KLTQDSNGNSFYEVDCNLS 259
Query: 411 --VKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYD 468
V F NA+++V + + D Q L ++ I+G+ ++ ++YD
Sbjct: 260 GDVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKANILGDNFLRSAYIVYD 319
Query: 469 TKNSQLGFA 477
++++ A
Sbjct: 320 LDDNEISIA 328
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 135 YIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPV----FDPSISPSYKKVLC 188
Y + +G G++ ++ DTGS TWV P K C N + V FDPS S ++K+
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWV---PHKGCDNSEGCVGKRFFDPSSSSTFKETDY 76
Query: 189 NSSTCHALEFATG 201
N + + A G
Sbjct: 77 NLNITYGTGGANG 89
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 134/373 (35%), Gaps = 90/373 (24%)
Query: 135 YIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSST 192
Y I +G +N V+ DTGS WV C+S F+PS S +Y N T
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYST---NGQT 70
Query: 193 CHALEFATGNSGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRN 252
+ + YG GS T V + FG N
Sbjct: 71 -----------------------FSLQYGSGSLTGFFGYDTLTVQ-SIQVPNQEFGLSEN 106
Query: 253 NKG---LFGGVSGLMGLGRSDLSLVSQTSEIFG---------GLFSYCLPSTQDAGASGS 300
G ++ G+MGL LS+ T+ + G +FS L S Q + G+
Sbjct: 107 EPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYL-SNQQGSSGGA 165
Query: 301 LILGG-NSSVFKNS---TPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGG-- 354
++ GG +SS++ P+T ++ + + IGG QASG+ G
Sbjct: 166 VVFGGVDSSLYTGQIYWAPVT---------QELYWQIGIEEFLIGG---QASGWCSEGCQ 213
Query: 355 ILIDSGTVITRLPPSIYSAL----------KAEFLKQFSGFPSAPGFSILDTCFNLSAYQ 404
++D+GT + +P SAL +FL + + P + +
Sbjct: 214 AIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGV------ 267
Query: 405 EVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQR 464
E +P N TV V ++ S Q I+G+ ++
Sbjct: 268 EFPLPPSSYILSNNGYCTVGVEPT--YLSSQNGQPLW------------ILGDVFLRSYY 313
Query: 465 VIYDTKNSQLGFA 477
+YD N+++GFA
Sbjct: 314 SVYDLGNNRVGFA 326
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 58/259 (22%)
Query: 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPC---KSCYNQQDPVFDPSISPSYKKVLC 188
+Y I +G + TVI DTGS + WV C K+C + +++ S S +YK+
Sbjct: 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKAC--RAHSMYESSDSSTYKE--- 68
Query: 189 NSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIF 247
+ T A+ + TG+ +G S S V+ GD DFI
Sbjct: 69 -NGTFGAIIYGTGSITGFFSQDS-------VTIGD---------------LVVKEQDFIE 105
Query: 248 GCGR-NNKGLFGGVSGLMGLGRSDLSLVSQTSEIFGGL-----FSYCLPSTQDAGASGSL 301
+N L G++GL +S+ + + GL FS+ L D G L
Sbjct: 106 ATDEADNVFLHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGEL 165
Query: 302 ILGG-NSSVFKNS---TPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGG--I 355
+ GG + + F+ P+TY ++ + + IG K ++GF G
Sbjct: 166 VFGGLDPNHFRGDHTYVPVTY---------QYYWQFGIGDVLIGDK---STGFCAPGCQA 213
Query: 356 LIDSGTVITRLPPSIYSAL 374
DSGT + P +I + +
Sbjct: 214 FADSGTSLLSGPTAIVTQI 232
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 59/268 (22%)
Query: 123 PLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSIS 180
P+ + + + Y A I +G N + VIVDTGS W+ P +
Sbjct: 2 PVAVTLHNEAITYTADITVGSDNQKLNVIVDTGSSDLWI-------------PDSNVICI 48
Query: 181 PSY---KKVLCNSSTCHALEFATGNSGVCSSSSPPDCN--YFVSYGDGSYTXXXXXXXXX 235
P + K C S+ G+ SS + + N + + YGDGSY
Sbjct: 49 PKWRGDKGDFCKSA---------GSYSPASSRTSQNLNTRFDIKYGDGSYAKGKLYKDTV 99
Query: 236 XXXKASVNDFIFGCGRNNKGLFGGVSGLMGLG---------RSDLSLVSQTSEIFGGLFS 286
SV D +F N G++G+G D +S ++ G +
Sbjct: 100 GIGGVSVRDQLFA----NVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAA 155
Query: 287 YCLPSTQDAGASGSLILGG-NSSVFKNS---TPITYTNMIPNPQLATFYILNLTGISIGG 342
Y L ++G +I GG + + + S PIT + + L +++ G
Sbjct: 156 YSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITSEKKLT---------VGLRSVNVRG 206
Query: 343 KQLQASGFAKGGILIDSGTVITRLPPSI 370
+ + A+ +L+DSGT I+ SI
Sbjct: 207 RNVDAN----TNVLLDSGTTISYFTRSI 230
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 149/413 (36%), Gaps = 73/413 (17%)
Query: 86 EQQQNRLILDNLHVQYLQSRIKN--------MISGNIKDVSNTEIPLTSGIRLQTLNYIA 137
E +R IL + L++ IK + N SN I L + Q + +
Sbjct: 14 ENAHDR-ILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIEL---VDFQNIMFYG 69
Query: 138 TIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHA 195
E+G T I+DTGS WV C + ++D S S +Y+K T
Sbjct: 70 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK----DGTKVE 125
Query: 196 LEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRNNK 254
+ + +G SG S N + Y + AS D
Sbjct: 126 MNYVSGTVSGFFSKDLVTVGNLSLPY---KFIEVIDTNGFEPTYTASTFD---------- 172
Query: 255 GLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGG 305
G++GLG DLS+ + ++I LF++ LP +G L +GG
Sbjct: 173 -------GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGG 223
Query: 306 NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITR 365
F P+TY + N L ++ + L +G L+ K ++DSGT
Sbjct: 224 IEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNIMLE-----KANCIVDSGTSAIT 272
Query: 366 LPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDV 425
+P + + P P + L C N +P + E N + T++
Sbjct: 273 VPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------SKLPTFEFTSE-NGKYTLEP 321
Query: 426 TGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ ++ +C L + L + T I+G+ + ++D N +G A
Sbjct: 322 EYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIA 374
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 149/413 (36%), Gaps = 73/413 (17%)
Query: 86 EQQQNRLILDNLHVQYLQSRIKN--------MISGNIKDVSNTEIPLTSGIRLQTLNYIA 137
E +R IL + L++ IK + N SN I L + Q + +
Sbjct: 87 ENAHDR-ILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSNDNIEL---VDFQNIMFYG 142
Query: 138 TIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHA 195
E+G T I+DTGS WV C + ++D S S +Y+K T
Sbjct: 143 DAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEK----DGTKVE 198
Query: 196 LEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRNNK 254
+ + +G SG S N + Y + AS D
Sbjct: 199 MNYVSGTVSGFFSKDLVTVGNLSLPY---KFIEVIDTNGFEPTYTASTFD---------- 245
Query: 255 GLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGG 305
G++GLG DLS+ + ++I LF++ LP +G L +GG
Sbjct: 246 -------GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDK--HTGFLTIGG 296
Query: 306 NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITR 365
F P+TY + N L ++ + L +G L+ K ++DSGT
Sbjct: 297 IEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNIMLE-----KANCIVDSGTSAIT 345
Query: 366 LPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDV 425
+P + + P P + L C N +P + E N + T++
Sbjct: 346 VPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------SKLPTFEFTSE-NGKYTLEP 394
Query: 426 TGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ ++ +C L + L + T I+G+ + ++D N +G A
Sbjct: 395 EYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIA 447
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 133 LNYIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNS 190
+ Y TI +G ++ TV+ DTGS WV C S F+P S +Y+ +
Sbjct: 12 MEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQS----T 67
Query: 191 STCHALEFATGN 202
S ++ + TG+
Sbjct: 68 SETVSITYGTGS 79
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 133 LNYIATIELG--GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNS 190
+ Y TI +G ++ TV+ DTGS WV C S F+P S +Y+ +
Sbjct: 12 MEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQS----T 67
Query: 191 STCHALEFATGN 202
S ++ + TG+
Sbjct: 68 SETVSITYGTGS 79
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 143 GRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPV----FDPSISPSYKKVLCNSSTCHALEF 198
G++ ++ DTGS TWV P K C + V FDPS S ++K N + +
Sbjct: 30 GQDFLLLFDTGSSDTWV---PHKGCTKSEGCVGSRFFDPSASSTFKATNYNLNITYGTGG 86
Query: 199 ATG 201
A G
Sbjct: 87 ANG 89
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 137/373 (36%), Gaps = 64/373 (17%)
Query: 118 SNTEIPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVF 175
SN I L + Q + + E+G T I+DTGS WV C + ++
Sbjct: 2 SNDNIEL---VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLY 58
Query: 176 DPSISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXX 234
D S S +Y+K T + + +G SG S V+ G+ S
Sbjct: 59 DSSKSRTYEK----DGTKVEMNYVSGTVSGFFSKD-------LVTVGNLSLPYKFIEVID 107
Query: 235 XXXXKASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLF 285
+ + F G++GLG DLS+ + ++I LF
Sbjct: 108 TNGFEPTYTASTF-------------DGILGLGWKDLSIGSVDPIVVELKNQNKIENALF 154
Query: 286 SYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL 345
++ LP +G L +GG F P+TY + N L ++ + L +G L
Sbjct: 155 TFYLPVHDK--HTGFLTIGGIEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNISL 206
Query: 346 QASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQE 405
+ K ++DSGT +P + + P P + L C N
Sbjct: 207 E-----KANCIVDSGTSAITVPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------ 251
Query: 406 VNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQR 464
+P + E N + T++ + ++ +C L + L + T I+G+ +
Sbjct: 252 SKLPTFEFTSE-NGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF 310
Query: 465 VIYDTKNSQLGFA 477
++D N +G A
Sbjct: 311 TVFDYDNHSVGIA 323
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 26/196 (13%)
Query: 286 SYCLPSTQDAGASGSLILGGNSSVFKNST----PITYTNMIPNPQLATFYILNLTGISIG 341
+Y L SG +I GG + + T P+T N + ++L + +
Sbjct: 153 AYSLYLNSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNELR---------IHLNTVKVA 203
Query: 342 GKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLS 401
G+ + A +L+DSGT IT L + + + F Q + + F ++D C NLS
Sbjct: 204 GQSINA----DVDVLLDSGTTITYLQQGVADQVISAFNGQETYDANGNLFYLVD-C-NLS 257
Query: 402 AYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQK 461
V F+ NA+++V + + ++ QV L + I+G+ +
Sbjct: 258 GS-------VDFAFDKNAKISVPASEFTAPLYTEDGQVYDQCQLLFGTSDYNILGDNFLR 310
Query: 462 NQRVIYDTKNSQLGFA 477
+ ++YD ++++ A
Sbjct: 311 SAYIVYDLDDNEISLA 326
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 137/373 (36%), Gaps = 64/373 (17%)
Query: 118 SNTEIPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVF 175
SN I L + Q + + E+G T I+DTGS WV C + ++
Sbjct: 4 SNDNIEL---VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLY 60
Query: 176 DPSISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXX 234
D S S +Y+K T + + +G SG S V+ G+ S
Sbjct: 61 DSSKSRTYEK----DGTKVEMNYVSGTVSGFFSKD-------LVTVGNLSLPYKFIEVID 109
Query: 235 XXXXKASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLF 285
+ + F G++GLG DLS+ + ++I LF
Sbjct: 110 TNGFEPTYTASTF-------------DGILGLGWKDLSIGSVDPIVVELKNQNKIENALF 156
Query: 286 SYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL 345
++ LP +G L +GG F P+TY + N L ++ + L +G L
Sbjct: 157 TFYLPVHDK--HTGFLTIGGIEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNIML 208
Query: 346 QASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQE 405
+ K ++DSGT +P + + P P + L C N
Sbjct: 209 E-----KANCIVDSGTSAITVPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------ 253
Query: 406 VNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQR 464
+P + E N + T++ + ++ +C L + L + T I+G+ +
Sbjct: 254 SKLPTFEFTSE-NGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF 312
Query: 465 VIYDTKNSQLGFA 477
++D N +G A
Sbjct: 313 TVFDYDNHSVGIA 325
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 31 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 86
Query: 202 N 202
Sbjct: 87 T 87
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 137/373 (36%), Gaps = 64/373 (17%)
Query: 118 SNTEIPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVF 175
SN I L + Q + + E+G T I+DTGS WV C + ++
Sbjct: 4 SNDNIEL---VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLY 60
Query: 176 DPSISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXX 234
D S S +Y+K T + + +G SG S V+ G+ S
Sbjct: 61 DSSKSRTYEK----DGTKVEMNYVSGTVSGFFSKD-------LVTVGNLSLPYKFIEVID 109
Query: 235 XXXXKASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLF 285
+ + F G++GLG DLS+ + ++I LF
Sbjct: 110 TNGFEPTYTASTF-------------DGILGLGWKDLSIGSVDPIVVELKNQNKIENALF 156
Query: 286 SYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL 345
++ LP +G L +GG F P+TY + N L ++ + L +G L
Sbjct: 157 TFYLPVHDK--HTGFLTIGGIEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNISL 208
Query: 346 QASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQE 405
+ K ++DSGT +P + + P P + L C N
Sbjct: 209 E-----KANCIVDSGTSAITVPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------ 253
Query: 406 VNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQR 464
+P + E N + T++ + ++ +C L + L + T I+G+ +
Sbjct: 254 SKLPTFEFTSE-NGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF 312
Query: 465 VIYDTKNSQLGFA 477
++D N +G A
Sbjct: 313 TVFDYDNHSVGIA 325
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 137/373 (36%), Gaps = 64/373 (17%)
Query: 118 SNTEIPLTSGIRLQTLNYIATIELGGRN--MTVIVDTGSDLTWVQCQPCKSCYNQQDPVF 175
SN I L + Q + + E+G T I+DTGS WV C + ++
Sbjct: 2 SNDNIEL---VDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLY 58
Query: 176 DPSISPSYKKVLCNSSTCHALEFATGN-SGVCSSSSPPDCNYFVSYGDGSYTXXXXXXXX 234
D S S +Y+K T + + +G SG S V+ G+ S
Sbjct: 59 DSSKSRTYEK----DGTKVEMNYVSGTVSGFFSKD-------LVTVGNLSLPYKFIEVID 107
Query: 235 XXXXKASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSL---------VSQTSEIFGGLF 285
+ + F G++GLG DLS+ + ++I LF
Sbjct: 108 TNGFEPTYTASTF-------------DGILGLGWKDLSIGSVDPIVVELKNQNKIENALF 154
Query: 286 SYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL 345
++ LP +G L +GG F P+TY + N L ++ + L +G L
Sbjct: 155 TFYLPVHDK--HTGFLTIGGIEERFYEG-PLTYEKL--NHDL--YWQITLDA-HVGNIML 206
Query: 346 QASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQE 405
+ K ++DSGT +P + + P P + L C N
Sbjct: 207 E-----KANCIVDSGTSAITVPTDFLNKMLQNL--DVIKVPFLPFYVTL--CNN------ 251
Query: 406 VNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVC-LALASLSYEDETGIIGNYQQKNQR 464
+P + E N + T++ + ++ +C L + L + T I+G+ +
Sbjct: 252 SKLPTFEFTSE-NGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF 310
Query: 465 VIYDTKNSQLGFA 477
++D N +G A
Sbjct: 311 TVFDYDNHSVGIA 323
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 31 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 86
Query: 202 N 202
Sbjct: 87 T 87
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 31 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 86
Query: 202 N 202
Sbjct: 87 T 87
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 28 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 83
Query: 202 N 202
Sbjct: 84 T 84
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 31 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 86
Query: 202 N 202
Sbjct: 87 T 87
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 27 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 82
Query: 202 N 202
Sbjct: 83 T 83
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 24 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 79
Query: 202 N 202
Sbjct: 80 T 80
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQ--QDPVFDPSISPSYKKVLCNSSTCHALEFATG 201
+ V+ DTGS WV C Y +FD S S SYK ++ T L ++TG
Sbjct: 74 QTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK----HNGTELTLRYSTG 129
Query: 202 N 202
Sbjct: 130 T 130
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 129/348 (37%), Gaps = 65/348 (18%)
Query: 144 RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNS 203
+ +I DTGS WV + C S ++D S S SY+K
Sbjct: 27 QKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSSKSKSYEK-----------------D 69
Query: 204 GVCSSSSPPDCNYFVSYGDGSYTXXXXXXXXXXXXKASVNDFIFGCGRNN-KGLFGGVS- 261
G ++YG G+ + FI ++ + L+
Sbjct: 70 GTKVE---------ITYGSGTVRGFFSKDLVTLGYLSLPYKFIEVTDTDDLEPLYTAAEF 120
Query: 262 -GLMGLGRSDLSL---------VSQTSEIFGGLFSYCLPSTQDAGASGSLILGGNSSVFK 311
G++GLG DLS+ + ++I LF++ LP SG L +GG F
Sbjct: 121 DGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHD--KHSGYLTIGGIEEKFY 178
Query: 312 NSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIY 371
+TY + N L F+ ++L ++ G ++ K +++DSGT P S
Sbjct: 179 EGE-LTYEKL--NHDL--FWQVDL-DVNFGKTSME-----KANVIVDSGTSTITAPTSFI 227
Query: 372 SALKAEFLKQFS--GFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIV 429
+ +F K + P P + + TC N ++P ++ + N +
Sbjct: 228 N----KFFKDLNVIKVPFLPFY--ITTCNN------KDMPTLEFKSANNTYTLEPEYYME 275
Query: 430 YFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFA 477
+ D + L + + + T I+G+ + ++D +GFA
Sbjct: 276 PLLDIDDTLCMLYILPVDIDKNTFILGDPFMRKYFTVFDYDKESIGFA 323
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 389 PGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDV 425
P S++D C +S + IPL+ ++ E +EM V V
Sbjct: 124 PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV 160
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 389 PGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDV 425
P S++D C +S + IPL+ ++ E +EM V V
Sbjct: 123 PMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV 159
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 135 YIATIELGG--RNMTVIVDTGSDLTWV-----QCQPCKSCYNQQDPVFDPSISPSYKKV 186
Y + + +G + TVI+DTGS WV QC C + F PS S SYK +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL 70
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 135 YIATIELGG--RNMTVIVDTGSDLTWV-----QCQPCKS----CYNQQDPVFDPSISPSY 183
Y A I +G + TV++DTGS WV +CQ S + +Q+ FDPS S S
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 184 KKV 186
+ +
Sbjct: 74 QNL 76
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 138 TIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYK 184
TI G+ + DTGS W+ C +C ++Q +DP+ S +Y+
Sbjct: 22 TIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTYQ 67
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 178
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 179 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 232
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSALKA 376
+ ++DSGT RLP ++ A A
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEAAVA 262
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 124 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 181
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 182 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 235
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEA 262
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 126 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 183
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 184 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 237
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEA 264
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 124 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 181
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 182 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 235
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEA 262
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 124 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 181
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 182 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 235
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 236 CKEYNYDKSIVDSGTTNLRLPKKVFEA 262
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 123 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 180
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 181 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 234
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 235 CKEYNYDKSIVDSGTTNLRLPKKVFEA 261
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 126 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 183
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 184 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 237
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 238 CKEYNYDKSIVDSGTTNLRLPKKVFEA 264
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 178
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 179 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 232
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEA 259
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 128 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 185
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 186 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 239
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 240 CKEYNYDKSIVDSGTTNLRLPKKVFEA 266
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 106 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLQ 163
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 164 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 217
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEA 244
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 122 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 179
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 180 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 233
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 234 CKEYNYDKSIVDSGTTNLRLPKKVFEA 260
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 178
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 179 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 232
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEA 259
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 178
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 179 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 232
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEA 259
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 168
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 169 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 222
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEA 249
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 125 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 182
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 183 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 236
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 237 CKEYNYDKSIVDSGTTNLRLPKKVFEA 263
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 166
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 167 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 220
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEA 247
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 131 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 188
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 189 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 242
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 243 CKEYNYDKSIVDSGTTNLRLPKKVFEA 269
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 145 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 202
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 203 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 256
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEA 283
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 105 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLQ 162
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 163 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 216
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 217 CKEYNYDKSIVDSGTTNLRLPKKVFEA 243
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 121 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 178
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 179 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 232
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 233 CKEYNYDKSIVDSGTTNLRLPKKVFEA 259
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 106 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 163
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 164 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 217
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 218 CKEYNYDKSIVDSGTTNLRLPKKVFEA 244
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 108 SDKFFIQGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLQ 165
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 166 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 219
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEA 246
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 108 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 165
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 166 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 219
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 220 CKEYNYDKSIVDSGTTNLRLPKKVFEA 246
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 166
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 167 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 220
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEA 247
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 145 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 202
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 203 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 256
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 257 CKEYNYDKSIVDSGTTNLRLPKKVFEA 283
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 168
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 169 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 222
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEA 249
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 111 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 168
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 169 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 222
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 223 CKEYNYDKSIVDSGTTNLRLPKKVFEA 249
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 243 NDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----SLVSQTSEIFGGLFSYCL-----PST 292
+D F G N +G+ G + L SLV QT LFS L P
Sbjct: 109 SDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTH--VPNLFSLQLCGAGFPLN 166
Query: 293 QD---AGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA- 347
Q A GS+I+GG + S++ S + YT + + +Y + + + I G+ L+
Sbjct: 167 QSEVLASVGGSMIIGGIDHSLYTGS--LWYTPI----RREWYYEVIIVRVEINGQDLKMD 220
Query: 348 -SGFAKGGILIDSGTVITRLPPSIYSA 373
+ ++DSGT RLP ++ A
Sbjct: 221 CKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,705,304
Number of Sequences: 62578
Number of extensions: 507942
Number of successful extensions: 1168
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 140
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)