Query 011482
Match_columns 484
No_of_seqs 324 out of 1696
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.5E-72 5.5E-77 582.3 43.7 392 64-484 22-431 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.3E-56 2.8E-61 462.2 38.6 337 130-482 42-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 1.2E-55 2.5E-60 439.3 33.4 294 134-481 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 8.9E-55 1.9E-59 441.7 32.3 313 146-479 10-361 (362)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 3.2E-53 6.9E-58 426.6 32.6 299 132-478 4-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.3E-53 9.3E-58 425.6 31.6 294 133-482 2-326 (326)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.5E-52 3.2E-57 420.3 31.4 300 123-478 2-317 (317)
8 PTZ00165 aspartyl protease; Pr 100.0 1E-51 2.2E-56 430.7 36.6 313 120-482 109-449 (482)
9 cd05486 Cathespin_E Cathepsin 100.0 2.4E-52 5.2E-57 418.6 30.3 297 135-478 1-316 (316)
10 cd05477 gastricsin Gastricsins 100.0 2E-51 4.4E-56 412.3 32.3 297 133-479 2-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 2.6E-51 5.7E-56 411.7 31.9 301 122-478 1-320 (320)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.7E-51 5.9E-56 412.9 31.7 304 123-478 3-329 (329)
13 cd05487 renin_like Renin stimu 100.0 4.6E-51 9.9E-56 411.0 31.5 299 132-479 6-326 (326)
14 cd06098 phytepsin Phytepsin, a 100.0 1.1E-50 2.5E-55 406.4 32.6 295 122-478 1-317 (317)
15 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-50 8.3E-55 415.8 33.1 307 118-480 126-450 (453)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 6.9E-49 1.5E-53 405.7 33.6 307 118-480 125-449 (450)
17 cd05473 beta_secretase_like Be 100.0 4E-49 8.7E-54 402.7 30.6 309 134-483 3-349 (364)
18 cd05475 nucellin_like Nucellin 100.0 1E-48 2.3E-53 384.1 28.9 255 133-481 1-273 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.6E-47 5.7E-52 372.7 28.8 253 134-481 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.3E-46 2.8E-51 370.4 26.4 262 135-478 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1E-44 2.2E-49 359.9 28.7 271 134-479 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 8.9E-45 1.9E-49 363.5 22.4 296 134-479 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-42 2.5E-47 342.3 28.6 267 135-478 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.4E-31 3E-36 242.1 14.6 157 135-305 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 4.8E-27 1E-31 212.2 14.5 147 330-478 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 1.2E-21 2.5E-26 165.1 12.3 103 137-266 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 6.7E-06 1.4E-10 66.7 7.7 93 134-268 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.8 0.007 1.5E-07 51.7 8.2 95 132-268 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.6 0.018 3.8E-07 45.7 8.9 89 137-267 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.4 0.15 3.3E-06 43.6 9.7 91 133-268 15-107 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.0 0.26 5.6E-06 42.2 6.0 103 338-476 21-124 (124)
32 cd05484 retropepsin_like_LTR_2 92.2 0.17 3.7E-06 40.5 3.7 28 135-162 1-28 (91)
33 TIGR03698 clan_AA_DTGF clan AA 90.0 2 4.2E-05 35.7 8.0 24 451-474 84-107 (107)
34 cd06095 RP_RTVL_H_like Retrope 89.2 2.8 6E-05 33.2 8.1 26 138-163 2-27 (86)
35 PF13975 gag-asp_proteas: gag- 88.8 0.73 1.6E-05 35.2 4.3 33 132-164 6-38 (72)
36 PF11925 DUF3443: Protein of u 88.7 8.2 0.00018 39.0 12.5 175 137-369 28-272 (370)
37 PF08284 RVP_2: Retroviral asp 88.5 0.82 1.8E-05 39.7 4.9 29 451-479 104-132 (135)
38 PF00077 RVP: Retroviral aspar 85.8 1.4 2.9E-05 35.8 4.5 28 136-163 7-34 (100)
39 COG3577 Predicted aspartyl pro 82.4 3.6 7.9E-05 38.0 6.1 82 131-250 102-183 (215)
40 cd05482 HIV_retropepsin_like R 77.2 3 6.6E-05 33.2 3.5 25 138-162 2-26 (87)
41 TIGR02281 clan_AA_DTGA clan AA 75.4 4.6 0.0001 34.3 4.3 35 329-374 10-44 (121)
42 cd05484 retropepsin_like_LTR_2 70.9 6.1 0.00013 31.4 3.9 30 338-375 5-34 (91)
43 PF13650 Asp_protease_2: Aspar 68.9 4.8 0.0001 31.3 2.9 29 338-374 3-31 (90)
44 PF12384 Peptidase_A2B: Ty3 tr 65.1 57 0.0012 29.2 8.8 23 353-375 46-68 (177)
45 PF13975 gag-asp_proteas: gag- 62.6 11 0.00024 28.6 3.6 29 338-374 13-41 (72)
46 cd05483 retropepsin_like_bacte 56.3 18 0.00038 28.4 4.0 29 338-374 7-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 49.1 19 0.00041 28.3 3.1 29 338-374 3-31 (86)
48 PF09668 Asp_protease: Asparty 42.8 45 0.00098 28.4 4.5 34 134-167 24-57 (124)
49 PF12384 Peptidase_A2B: Ty3 tr 42.8 36 0.00079 30.4 4.0 28 135-162 35-62 (177)
50 COG5550 Predicted aspartyl pro 31.5 30 0.00065 29.4 1.6 24 451-474 94-117 (125)
51 PF13134 DUF3948: Protein of u 29.9 35 0.00076 21.7 1.3 24 2-25 9-32 (35)
52 cd05481 retropepsin_like_LTR_1 28.3 47 0.001 26.6 2.2 23 138-160 2-25 (93)
53 PF08284 RVP_2: Retroviral asp 25.2 1E+02 0.0023 26.5 4.0 28 135-162 22-49 (135)
54 COG3577 Predicted aspartyl pro 24.9 1.2E+02 0.0026 28.3 4.4 35 329-374 104-138 (215)
55 PF09668 Asp_protease: Asparty 24.1 81 0.0018 26.9 3.0 29 338-374 29-57 (124)
56 PF04360 Serglycin: Serglycin 24.0 50 0.0011 28.6 1.7 20 158-177 35-57 (150)
57 cd00303 retropepsin_like Retro 23.8 80 0.0017 22.9 2.8 22 138-159 2-23 (92)
58 PF03823 Neurokinin_B: Neuroki 23.7 59 0.0013 23.4 1.7 25 8-32 1-25 (59)
59 cd05481 retropepsin_like_LTR_1 23.7 55 0.0012 26.2 1.9 23 353-375 11-33 (93)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.5e-72 Score=582.30 Aligned_cols=392 Identities=34% Similarity=0.614 Sum_probs=321.6
Q ss_pred CCceEEEEEec-cCCCCCCC---CchHHHHHHHhhhHHHHHHHHHHHhccccCCcccCCccccccccCccccceeEEEEE
Q 011482 64 MGAITLELKHK-NYCSGKIV---DWNEQQQNRLILDNLHVQYLQSRIKNMISGNIKDVSNTEIPLTSGIRLQTLNYIATI 139 (484)
Q Consensus 64 ~~~~~l~l~hr-~~~s~~~~---~~~~~~~~~~~~d~~r~~~l~~r~~~~~~~~~~~~~~~~~pl~~~~~~~~~~Y~~~v 139 (484)
.++++++|+|| +||+|.+. .+.++++++++|+++|+++|.++.. ...|+..+...++++|+++|
T Consensus 22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA------------SPNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc------------cCCccccCcccCCccEEEEE
Confidence 35699999999 78888543 3457899999999999988865421 12344444445677899999
Q ss_pred EEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCCCCeee
Q 011482 140 ELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPDCNYF 217 (484)
Q Consensus 140 ~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~~C~~~ 217 (484)
.||| |++.|++||||+++||+|.+|..|+.|.++.|||++|+||+.++|+++.|..+... ..|..+ +.|.|.
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~----~~c~~~--~~c~y~ 163 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ----ASCSDE--NTCTYS 163 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC----CCCCCC--CCCeeE
Confidence 9999 99999999999999999999999999999999999999999999999999865432 346543 569999
Q ss_pred EEcCCCceEeEEEEEEEEEecc-----ccccceEEEEEeccCCCCC-CcCeeeecCCCCCccccchhhccCCeeEEeeCC
Q 011482 218 VSYGDGSYTRGELGREHLGLGK-----ASVNDFIFGCGRNNKGLFG-GVSGLMGLGRSDLSLVSQTSEIFGGLFSYCLPS 291 (484)
Q Consensus 218 ~~Ygdgs~~~G~~~~Dtltlg~-----~~~~~~~fG~~~~~~~~~~-~~~GIlGLg~~~~Sl~~ql~~~~~~~FS~~L~~ 291 (484)
+.|+||+.+.|++++|+|+|++ ..++++.|||++.+.+.|. ..+||||||++++|+++|+...++++|||||++
T Consensus 164 i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~ 243 (431)
T PLN03146 164 YSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVP 243 (431)
T ss_pred EEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCC
Confidence 9999999889999999999987 3588999999999888664 589999999999999999987767899999986
Q ss_pred CC-CCCCcceEEecCCCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEee--cCCC---CCCcEEEcccccccc
Q 011482 292 TQ-DAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQ--ASGF---AKGGILIDSGTVITR 365 (484)
Q Consensus 292 ~~-~~~~~G~L~fGg~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~--~~~~---~~~~~iiDSGTt~t~ 365 (484)
.. +....|.|+||+. .++. ...+.|+|++.+.. +.+|+|+|++|+||++.++ ...| +.+++||||||++|+
T Consensus 244 ~~~~~~~~g~l~fG~~-~~~~-~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~ 320 (431)
T PLN03146 244 LSSDSNGTSKINFGTN-AIVS-GSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTL 320 (431)
T ss_pred CCCCCCCcceEEeCCc-cccC-CCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcccee
Confidence 41 2245799999994 3333 34589999986422 4799999999999999865 3222 235899999999999
Q ss_pred cCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCceEEEEEe
Q 011482 366 LPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALAS 445 (484)
Q Consensus 366 Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~Cl~~~~ 445 (484)
||+++|++|+++|.+++...+.......+++||+... ...+|+|+|+|+ |+++.|++++|++.. ..+.+|+++.+
T Consensus 321 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~--~~~~~Cl~~~~ 395 (431)
T PLN03146 321 LPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKV--SEDLVCFAMIP 395 (431)
T ss_pred cCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEc--CCCcEEEEEec
Confidence 9999999999999998865443333334567997532 247999999995 799999999999876 34678999876
Q ss_pred CCCCCCceEEchhhhcceEEEEECCCCEEEEecCCCCCC
Q 011482 446 LSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCSSM 484 (484)
Q Consensus 446 ~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C~~~ 484 (484)
.. +.||||+.|||++||+||++++|||||+.+|+++
T Consensus 396 ~~---~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 396 TS---SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred CC---CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 43 4699999999999999999999999999999864
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-56 Score=462.22 Aligned_cols=337 Identities=39% Similarity=0.743 Sum_probs=275.6
Q ss_pred ccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCC-CCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCC
Q 011482 130 LQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCK-SCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVC 206 (484)
Q Consensus 130 ~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~-~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C 206 (484)
...++|+++|.||| |.|.|++||||+++||+|.+|. .|+.+.++.|||++||||+.+.|.++.|...... |
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~------~ 115 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS------C 115 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC------c
Confidence 34567999999999 9999999999999999999999 8998766779999999999999999999977532 4
Q ss_pred CCCCCCCCeeeEEcCCCceEeEEEEEEEEEecc---ccccceEEEEEeccCCC-C--CCcCeeeecCCCCCccccchhhc
Q 011482 207 SSSSPPDCNYFVSYGDGSYTRGELGREHLGLGK---ASVNDFIFGCGRNNKGL-F--GGVSGLMGLGRSDLSLVSQTSEI 280 (484)
Q Consensus 207 ~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~---~~~~~~~fG~~~~~~~~-~--~~~~GIlGLg~~~~Sl~~ql~~~ 280 (484)
.. ++.|.|.+.|+||+.++|++++|+|++++ ..++++.|||+..+.+. . ...+||||||++++|+++|+...
T Consensus 116 ~~--~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~ 193 (398)
T KOG1339|consen 116 SP--NSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSF 193 (398)
T ss_pred cc--CCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccc
Confidence 33 36899999999988889999999999998 77788999999999763 2 46899999999999999999887
Q ss_pred cCC--eeEEeeCCCCCC-CCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEE-eecCCCC--CC
Q 011482 281 FGG--LFSYCLPSTQDA-GASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQ-LQASGFA--KG 353 (484)
Q Consensus 281 ~~~--~FS~~L~~~~~~-~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~-i~~~~~~--~~ 353 (484)
... +|||||.+.... ...|.|+||+ +...+. +.+.|+||+..+. .+|.|.+.+|+||++. +....+. ..
T Consensus 194 ~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~--~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~~~~~~ 269 (398)
T KOG1339|consen 194 YNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYT--GSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLFCTDGG 269 (398)
T ss_pred cCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcC--CceEEEeeccCCC--ccEEEEEeEEEECCccCCCcceEecCCC
Confidence 544 499999976211 2589999999 555553 6899999999853 4999999999999854 1111111 37
Q ss_pred cEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEe
Q 011482 354 GILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVK 433 (484)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 433 (484)
++|+||||++++||+++|++|.++|.+.+.. ....+.+.. .|+...... ..+|.|+|+|.+|+.|.+++++|++...
T Consensus 270 ~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~-~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~ 346 (398)
T KOG1339|consen 270 GAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFV-PCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVS 346 (398)
T ss_pred CEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceee-ecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEEC
Confidence 8999999999999999999999999987411 122333444 599877322 3499999999768999999999999874
Q ss_pred cCCCceEEEEEeCCCCCCceEEchhhhcceEEEEECC-CCEEEEec--CCCC
Q 011482 434 SDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTK-NSQLGFAG--EDCS 482 (484)
Q Consensus 434 ~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~~IGFa~--~~C~ 482 (484)
..... |+++.........||||+.|||+++++||.. ++|||||+ ..|+
T Consensus 347 ~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 347 DGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 32222 9987665432258999999999999999999 99999999 8886
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-55 Score=439.29 Aligned_cols=294 Identities=54% Similarity=1.018 Sum_probs=250.0
Q ss_pred eEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 134 ~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
+|+++|.||| |++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 4999999999 999999999999999988765
Q ss_pred CCCeeeEEcCCCceEeEEEEEEEEEeccc-cccceEEEEEeccCCCCCCcCeeeecCCCCCccccchhhccCCeeEEeeC
Q 011482 212 PDCNYFVSYGDGSYTRGELGREHLGLGKA-SVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSLVSQTSEIFGGLFSYCLP 290 (484)
Q Consensus 212 ~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~-~~~~~~fG~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~~~~~~~FS~~L~ 290 (484)
|.|.+.|+||+.+.|.+++|+|+|++. .++++.|||++...+.+...+||||||+...++++|+....+++||+||+
T Consensus 34 --~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 34 --CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred --CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 278899999998899999999999988 89999999999888766689999999999999999998777899999998
Q ss_pred CCCCCCCcceEEecCCCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecC--CCCCCcEEEcccccccccCH
Q 011482 291 STQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQAS--GFAKGGILIDSGTVITRLPP 368 (484)
Q Consensus 291 ~~~~~~~~G~L~fGg~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~--~~~~~~~iiDSGTt~t~Lp~ 368 (484)
+. +....|+|+||+.+.. .+++.|+|++.++..+.+|.|+|++|+||++.+... ......+||||||++++||+
T Consensus 112 ~~-~~~~~G~l~fGg~d~~---~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 112 DR-SSSSSGYLSFGAAASV---PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred CC-CCCCCceEEeCCcccc---CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 64 2245899999995443 388999999987655579999999999999986531 22346899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCceEEEEEeCCC
Q 011482 369 SIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSY 448 (484)
Q Consensus 369 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~Cl~~~~~~~ 448 (484)
++|++|.+++.+++...+...+.+.++.|++.+......+|+|+|+|+||++++|++++|++... ..+..|+++...+.
T Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~~~~~~~ 266 (299)
T cd05472 188 SAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLAFAGTSD 266 (299)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEEEeCCCC
Confidence 99999999999887554444445566679977654445899999999768999999999998432 35678998877643
Q ss_pred CCCceEEchhhhcceEEEEECCCCEEEEecCCC
Q 011482 449 EDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDC 481 (484)
Q Consensus 449 ~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C 481 (484)
....||||+.|||++|+|||++++|||||+.+|
T Consensus 267 ~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 267 DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 346799999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=8.9e-55 Score=441.74 Aligned_cols=313 Identities=27% Similarity=0.516 Sum_probs=249.3
Q ss_pred EEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCC-------CCCCCCCCCCCCCeeeE
Q 011482 146 MTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATG-------NSGVCSSSSPPDCNYFV 218 (484)
Q Consensus 146 ~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~-------~~~~C~~~~~~~C~~~~ 218 (484)
+.|++||||+++||||.+ .+|+||+.++|+++.|........ +...|.+ +.|.|..
T Consensus 10 ~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~---~~C~y~~ 72 (362)
T cd05489 10 VPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN---NTCTAHP 72 (362)
T ss_pred eeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC---CcCeeEc
Confidence 899999999999999985 468899999999999986653311 1124533 4598876
Q ss_pred E-cCCCceEeEEEEEEEEEecc--------ccccceEEEEEeccC--CCCCCcCeeeecCCCCCccccchhhccC--Cee
Q 011482 219 S-YGDGSYTRGELGREHLGLGK--------ASVNDFIFGCGRNNK--GLFGGVSGLMGLGRSDLSLVSQTSEIFG--GLF 285 (484)
Q Consensus 219 ~-Ygdgs~~~G~~~~Dtltlg~--------~~~~~~~fG~~~~~~--~~~~~~~GIlGLg~~~~Sl~~ql~~~~~--~~F 285 (484)
. |++|+.+.|++++|+|+|+. ..++++.|||++++. +.+..++||||||++++|+++|+..... ++|
T Consensus 73 ~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~F 152 (362)
T cd05489 73 YNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKF 152 (362)
T ss_pred cccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcce
Confidence 5 88998899999999999963 268899999999864 3445689999999999999999987643 789
Q ss_pred EEeeCCCCCCCCcceEEecCCCc-ccc----CCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeec--CCC-----CCC
Q 011482 286 SYCLPSTQDAGASGSLILGGNSS-VFK----NSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA--SGF-----AKG 353 (484)
Q Consensus 286 S~~L~~~~~~~~~G~L~fGg~~~-~~~----~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~--~~~-----~~~ 353 (484)
||||++. ....|.|+||+.+. .+. ..+.++||||+.++..+.+|+|+|++|+||+++++. ..+ +.+
T Consensus 153 S~CL~~~--~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSS--PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCC--CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 9999964 24589999999443 221 136799999998765567999999999999998642 211 246
Q ss_pred cEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCC-cccccccccCCCc----ccccceEEEEEec-CcEEEEccCC
Q 011482 354 GILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGF-SILDTCFNLSAYQ----EVNIPLVKMEFEG-NAEMTVDVTG 427 (484)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~----~~~~P~i~~~f~g-g~~~~l~~~~ 427 (484)
++||||||++|+||+++|++|.++|.+++...+..... ...++||+..... ...+|+|+|+|+| |++|+|+|++
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~n 310 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGAN 310 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCc
Confidence 89999999999999999999999999988654332221 1236799865321 3589999999987 7999999999
Q ss_pred eEEEEecCCCceEEEEEeCCCC-CCceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 428 IVYFVKSDASQVCLALASLSYE-DETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 428 ~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
|+++.. ++.+|++|...+.. ...||||+.|||++|++||++++|||||+.
T Consensus 311 y~~~~~--~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 311 SMVQVK--GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEcC--CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 998763 46789999876532 357999999999999999999999999974
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.2e-53 Score=426.62 Aligned_cols=299 Identities=23% Similarity=0.482 Sum_probs=243.1
Q ss_pred ceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCC----CCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCC
Q 011482 132 TLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCK----SCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGV 205 (484)
Q Consensus 132 ~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~----~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~ 205 (484)
+.+|+++|.||| |++.|+|||||+++||+|.+|. .|. .++.|||++|+||+.
T Consensus 4 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~-------------------- 61 (325)
T cd05490 4 DAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACW--LHHKYNSSKSSTYVK-------------------- 61 (325)
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcccc--CcCcCCcccCcceee--------------------
Confidence 457999999999 9999999999999999999996 454 357999999999983
Q ss_pred CCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCcccc------c
Q 011482 206 CSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLSLVS------Q 276 (484)
Q Consensus 206 C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~Sl~~------q 276 (484)
..|.|.+.|++|+. .|.+++|+|++++..++++.|||+++..+ .| ...+||||||++..+... +
T Consensus 62 ------~~~~~~i~Yg~G~~-~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 62 ------NGTEFAIQYGSGSL-SGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred ------CCcEEEEEECCcEE-EEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 12599999999985 89999999999999999999999998766 23 357999999998776432 3
Q ss_pred hhh---ccCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCC
Q 011482 277 TSE---IFGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAK 352 (484)
Q Consensus 277 l~~---~~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~ 352 (484)
+.. ...++||+||.+..+....|.|+||| ++.+|. +++.|+|+... .+|.|++++|+||+...... ..
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~--g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~--~~ 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYT--GDLHYVNVTRK----AYWQIHMDQVDVGSGLTLCK--GG 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcC--CceEEEEcCcc----eEEEEEeeEEEECCeeeecC--CC
Confidence 332 22578999998642234579999999 656664 89999999764 79999999999998753322 13
Q ss_pred CcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEE
Q 011482 353 GGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFV 432 (484)
Q Consensus 353 ~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 432 (484)
..+||||||+++++|++++++|.+++.+. +...+.+.++ |++.. .+|+|+|+| ||++++|+|++|+++.
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~~-C~~~~-----~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQGEYMID-CEKIP-----TLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCc----cccCCCEEec-ccccc-----cCCCEEEEE-CCEEEEEChHHeEEec
Confidence 58999999999999999999999887542 3334566676 98765 789999999 7899999999999876
Q ss_pred ecCCCceEE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 433 KSDASQVCL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 433 ~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
...+...|+ +|...+ .....||||++|||++|+|||.+++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 433456898 576532 1235799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.3e-53 Score=425.58 Aligned_cols=294 Identities=24% Similarity=0.503 Sum_probs=242.1
Q ss_pred eeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCC
Q 011482 133 LNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSS 210 (484)
Q Consensus 133 ~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~ 210 (484)
+.|+++|.||| |++.|+|||||+++||+|.+|..|..+.++.|||++|+|++.++|++..|.. ...|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~~-- 72 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCLN-- 72 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-------cCcCCC--
Confidence 47999999999 9999999999999999999999999888899999999999999999999952 123533
Q ss_pred CCCCeeeEEcCCCceEeEEEEEEEEEecccccc-------ceEEEEEeccCCCC--CCcCeeeecCCCCCccc-------
Q 011482 211 PPDCNYFVSYGDGSYTRGELGREHLGLGKASVN-------DFIFGCGRNNKGLF--GGVSGLMGLGRSDLSLV------- 274 (484)
Q Consensus 211 ~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~-------~~~fG~~~~~~~~~--~~~~GIlGLg~~~~Sl~------- 274 (484)
+.|.|.+.|+||+.+.|.+++|+|+|++..++ ++.|||+....+.| ...+||||||+...+-+
T Consensus 73 -~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l 151 (326)
T cd06096 73 -NKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILL 151 (326)
T ss_pred -CcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHH
Confidence 46999999999998899999999999976653 57899999887754 36899999999875311
Q ss_pred -cchhhc-cCCeeEEeeCCCCCCCCcceEEecC-CCccccC--------CCCeEEeeCcCCCCCCceEEEEEeEEEEcCE
Q 011482 275 -SQTSEI-FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKN--------STPITYTNMIPNPQLATFYILNLTGISIGGK 343 (484)
Q Consensus 275 -~ql~~~-~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~--------~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~ 343 (484)
.|.... ..++||+||++. .|.|+||+ ++.++.. .+++.|+|+... .+|.|.+++|+|+++
T Consensus 152 ~~~~~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~ 222 (326)
T cd06096 152 FTKRPKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGT 222 (326)
T ss_pred HHhcccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEccc
Confidence 111111 148999999853 69999999 5555431 268999999865 699999999999998
Q ss_pred E--eecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEE
Q 011482 344 Q--LQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEM 421 (484)
Q Consensus 344 ~--i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~ 421 (484)
. +... ....+||||||++++||+++|++|.+++ |+|+|+|++|+++
T Consensus 223 ~~~~~~~--~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~ 270 (326)
T cd06096 223 TSNSGNT--KGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKI 270 (326)
T ss_pred ccceecc--cCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEE
Confidence 6 2211 2468999999999999999999998765 7999999768999
Q ss_pred EEccCCeEEEEecCCCceEEEEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecCCCC
Q 011482 422 TVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCS 482 (484)
Q Consensus 422 ~l~~~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C~ 482 (484)
+++|++|++..+ ....|+++... .+.+|||++|||++|+|||.+++|||||+++|.
T Consensus 271 ~i~p~~y~~~~~--~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 271 DWKPSSYLYKKE--SFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EECHHHhccccC--CceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999998752 22344555543 257999999999999999999999999999994
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.5e-52 Score=420.27 Aligned_cols=300 Identities=24% Similarity=0.452 Sum_probs=248.6
Q ss_pred ccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccC
Q 011482 123 PLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFAT 200 (484)
Q Consensus 123 pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~ 200 (484)
||.+..+ .+|+++|.||+ |++.|+|||||+++||+|..|..|.++.++.|||++|+|++..
T Consensus 2 ~l~n~~~---~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~-------------- 64 (317)
T cd05478 2 PLTNYLD---MEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST-------------- 64 (317)
T ss_pred ccccccC---CEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC--------------
Confidence 6666654 46999999999 9999999999999999999998766666789999999999842
Q ss_pred CCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCC---CCcCeeeecCCCCCc-----
Q 011482 201 GNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLF---GGVSGLMGLGRSDLS----- 272 (484)
Q Consensus 201 ~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~---~~~~GIlGLg~~~~S----- 272 (484)
.|.|.+.|++|+. .|.+++|+|++++..++++.|||++...+.+ ...+||||||+..++
T Consensus 65 ------------~~~~~~~yg~gs~-~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 131 (317)
T cd05478 65 ------------GQPLSIQYGTGSM-TGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGAT 131 (317)
T ss_pred ------------CcEEEEEECCceE-EEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCC
Confidence 2589999999995 9999999999999999999999999877643 257999999987654
Q ss_pred -cccchhhc---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeec
Q 011482 273 -LVSQTSEI---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA 347 (484)
Q Consensus 273 -l~~ql~~~---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~ 347 (484)
++.|+... ..++||+||.+. ....|.|+||| ++.+|. ++++|+|+... .+|.|.+++|+|+++.+..
T Consensus 132 ~~~~~L~~~g~i~~~~FS~~L~~~--~~~~g~l~~Gg~d~~~~~--g~l~~~p~~~~----~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 132 PVFDNMMSQGLVSQDLFSVYLSSN--GQQGSVVTFGGIDPSYYT--GSLNWVPVTAE----TYWQITVDSVTINGQVVAC 203 (317)
T ss_pred CHHHHHHhCCCCCCCEEEEEeCCC--CCCCeEEEEcccCHHHcc--CceEEEECCCC----cEEEEEeeEEEECCEEEcc
Confidence 45555432 247899999964 33579999999 556664 89999999764 7999999999999998764
Q ss_pred CCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCC
Q 011482 348 SGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTG 427 (484)
Q Consensus 348 ~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 427 (484)
.. ...+||||||++++||+++|++|.+++.... ...+.+.++ |+... .+|.|+|+| +|++++|++++
T Consensus 204 ~~--~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~----~~~~~~~~~-C~~~~-----~~P~~~f~f-~g~~~~i~~~~ 270 (317)
T cd05478 204 SG--GCQAIVDTGTSLLVGPSSDIANIQSDIGASQ----NQNGEMVVN-CSSIS-----SMPDVVFTI-NGVQYPLPPSA 270 (317)
T ss_pred CC--CCEEEECCCchhhhCCHHHHHHHHHHhCCcc----ccCCcEEeC-CcCcc-----cCCcEEEEE-CCEEEEECHHH
Confidence 31 3589999999999999999999998886532 123456666 98765 789999999 67999999999
Q ss_pred eEEEEecCCCceEE-EEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 428 IVYFVKSDASQVCL-ALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 428 ~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
|++.. ...|+ +|...+. .+.||||++|||++|+|||++++||||||
T Consensus 271 y~~~~----~~~C~~~~~~~~~-~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 271 YILQD----QGSCTSGFQSMGL-GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred heecC----CCEEeEEEEeCCC-CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 98652 57898 5666432 46799999999999999999999999996
No 8
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1e-51 Score=430.69 Aligned_cols=313 Identities=21% Similarity=0.381 Sum_probs=249.2
Q ss_pred cccccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCccccccc
Q 011482 120 TEIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALE 197 (484)
Q Consensus 120 ~~~pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~ 197 (484)
...||.+..+ .+|+++|+||| |+|.|++||||+++||+|..|..|.++.++.|||++||||+++.++.
T Consensus 109 ~~~~l~n~~d---~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------- 178 (482)
T PTZ00165 109 LQQDLLNFHN---SQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------- 178 (482)
T ss_pred cceecccccC---CeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-------
Confidence 5677887754 46999999999 99999999999999999999976555667899999999999642111
Q ss_pred ccCCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CCC--CcCeeeecCCCCCcc-
Q 011482 198 FATGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LFG--GVSGLMGLGRSDLSL- 273 (484)
Q Consensus 198 ~~~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~~--~~~GIlGLg~~~~Sl- 273 (484)
..+.+.+.||+|+. .|.+++|+|++++..++++.|||++...+ .|. .+|||||||+..++.
T Consensus 179 --------------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 179 --------------ESAETYIQYGTGEC-VLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred --------------ccceEEEEeCCCcE-EEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 11256799999987 79999999999999999999999998765 343 689999999987642
Q ss_pred --------ccchhhc---cCCeeEEeeCCCCCCCCcceEEecCCCccc-cCCCCeEEeeCcCCCCCCceEEEEEeEEEEc
Q 011482 274 --------VSQTSEI---FGGLFSYCLPSTQDAGASGSLILGGNSSVF-KNSTPITYTNMIPNPQLATFYILNLTGISIG 341 (484)
Q Consensus 274 --------~~ql~~~---~~~~FS~~L~~~~~~~~~G~L~fGg~~~~~-~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg 341 (484)
+.++... ..++||+||++. ....|+|+|||.+.++ ...+++.|+|+... .||.|.+++|+||
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~--~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vg 317 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKD--LNQPGSISFGSADPKYTLEGHKIWWFPVIST----DYWEIEVVDILID 317 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccC--CCCCCEEEeCCcCHHHcCCCCceEEEEcccc----ceEEEEeCeEEEC
Confidence 2233321 257899999853 3457999999954443 22468999999874 7999999999999
Q ss_pred CEEeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEec--C-
Q 011482 342 GKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEG--N- 418 (484)
Q Consensus 342 ~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g- 418 (484)
++.+.... ....+|+||||+++++|++++++|.+++... . .|++.. .+|+|+|+|.| |
T Consensus 318 g~~~~~~~-~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------~-~C~~~~-----~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 318 GKSLGFCD-RKCKAAIDTGSSLITGPSSVINPLLEKIPLE------------E-DCSNKD-----SLPRISFVLEDVNGR 378 (482)
T ss_pred CEEeeecC-CceEEEEcCCCccEeCCHHHHHHHHHHcCCc------------c-cccccc-----cCCceEEEECCCCCc
Confidence 98764321 2468999999999999999999999876431 1 498765 79999999943 1
Q ss_pred -cEEEEccCCeEEEEe--cCCCceEE-EEEeCCC---CCCceEEchhhhcceEEEEECCCCEEEEecCCCC
Q 011482 419 -AEMTVDVTGIVYFVK--SDASQVCL-ALASLSY---EDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCS 482 (484)
Q Consensus 419 -~~~~l~~~~~~~~~~--~~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C~ 482 (484)
+++.|+|++|+++.. ..++..|+ +|...+. .++.||||++|||++|+|||.+++|||||+++|.
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 389999999998742 23456897 7876532 2357999999999999999999999999999985
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.4e-52 Score=418.57 Aligned_cols=297 Identities=24% Similarity=0.414 Sum_probs=241.1
Q ss_pred EEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCC
Q 011482 135 YIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPP 212 (484)
Q Consensus 135 Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~ 212 (484)
|+++|.||| |+++|+|||||+++||+|..|..+.++.++.|||++|+||+. .
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~--------------------------~ 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVS--------------------------N 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCccccc--------------------------C
Confidence 889999999 999999999999999999999643333467999999999983 2
Q ss_pred CCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCcc------ccchhhc---
Q 011482 213 DCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLSL------VSQTSEI--- 280 (484)
Q Consensus 213 ~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~Sl------~~ql~~~--- 280 (484)
.|.|.+.|++|+. .|.+++|+|++++..++++.|||+....+ .| ...+||||||++.++. ..++...
T Consensus 55 ~~~~~i~Yg~g~~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 55 GEAFSIQYGTGSL-TGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred CcEEEEEeCCcEE-EEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 3699999999985 99999999999999999999999987765 23 3689999999987653 2333321
Q ss_pred cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEEcc
Q 011482 281 FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDS 359 (484)
Q Consensus 281 ~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~iiDS 359 (484)
..++||+||.+..+....|.|+||| ++++|. +++.|+|+... .+|.|++++|+||++.+.... ...+||||
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~--g~l~~~pi~~~----~~w~v~l~~i~v~g~~~~~~~--~~~aiiDT 205 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFS--GQLNWVPVTVQ----GYWQIQLDNIQVGGTVIFCSD--GCQAIVDT 205 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcc--cceEEEECCCc----eEEEEEeeEEEEecceEecCC--CCEEEECC
Confidence 1468999998642234579999999 666665 89999999764 799999999999998864321 35899999
Q ss_pred cccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCce
Q 011482 360 GTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQV 439 (484)
Q Consensus 360 GTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~ 439 (484)
||++++||++++++|.+++.+. ...+.+.++ |+... .+|+|+|+| +|++++|+|++|++....++...
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~-----~~~~~~~~~-C~~~~-----~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~ 273 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGAT-----ATDGEYGVD-CSTLS-----LMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGY 273 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCc-----ccCCcEEEe-ccccc-----cCCCEEEEE-CCEEEEeCHHHeEEecccCCCCE
Confidence 9999999999999998777532 123456666 98765 799999999 67999999999998753345678
Q ss_pred EE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 440 CL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 440 Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
|+ +|+... ...+.||||++|||++|+|||.+++|||||+
T Consensus 274 C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 274 CSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 98 676542 2235799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2e-51 Score=412.28 Aligned_cols=297 Identities=22% Similarity=0.453 Sum_probs=243.5
Q ss_pred eeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCC
Q 011482 133 LNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSS 210 (484)
Q Consensus 133 ~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~ 210 (484)
..|+++|.||| |++.|+|||||+++||+|..|..+.+..++.|||++|+||+.
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~------------------------- 56 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYST------------------------- 56 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceE-------------------------
Confidence 46999999999 999999999999999999999754444567999999999983
Q ss_pred CCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCC-C--CCcCeeeecCCCCC------ccccchhhc-
Q 011482 211 PPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGL-F--GGVSGLMGLGRSDL------SLVSQTSEI- 280 (484)
Q Consensus 211 ~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~-~--~~~~GIlGLg~~~~------Sl~~ql~~~- 280 (484)
..|.|.+.|++|+. .|.+++|+|++++..++++.|||++...+. + ...+||||||+... +++.|+...
T Consensus 57 -~~~~~~~~Yg~Gs~-~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 57 -NGETFSLQYGSGSL-TGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred -CCcEEEEEECCcEE-EEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 23699999999986 899999999999999999999999987652 2 35799999998654 355566543
Q ss_pred --cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEE
Q 011482 281 --FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILI 357 (484)
Q Consensus 281 --~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~ii 357 (484)
..++||+||.+. .....|.|+||+ +..++. +++.|+|+... .+|.|++++|+|+++++.... ....+||
T Consensus 135 ~i~~~~FS~~L~~~-~~~~~g~l~fGg~d~~~~~--g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~-~~~~~ii 206 (318)
T cd05477 135 LLQAPIFSFYLSGQ-QGQQGGELVFGGVDNNLYT--GQIYWTPVTSE----TYWQIGIQGFQINGQATGWCS-QGCQAIV 206 (318)
T ss_pred CcCCCEEEEEEcCC-CCCCCCEEEEcccCHHHcC--CceEEEecCCc----eEEEEEeeEEEECCEEecccC-CCceeeE
Confidence 247899999864 334579999999 556664 88999999764 799999999999998864211 1357999
Q ss_pred cccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCC
Q 011482 358 DSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDAS 437 (484)
Q Consensus 358 DSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 437 (484)
||||++++||+++|++|++++..+.. ..+.+.++ |+... .+|.|+|+| +|+++.|++++|++.. .
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~----~~~~~~~~-C~~~~-----~~p~l~~~f-~g~~~~v~~~~y~~~~----~ 271 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD----QYGQYVVN-CNNIQ-----NLPTLTFTI-NGVSFPLPPSAYILQN----N 271 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc----cCCCEEEe-CCccc-----cCCcEEEEE-CCEEEEECHHHeEecC----C
Confidence 99999999999999999998876532 24556665 98765 789999999 6799999999998752 4
Q ss_pred ceEE-EEEeCC----CCCCceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 438 QVCL-ALASLS----YEDETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 438 ~~Cl-~~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
.+|+ +|.+.. .+...||||+.|||++|++||++++|||||++
T Consensus 272 ~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 272 GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 6897 776531 12246999999999999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.6e-51 Score=411.69 Aligned_cols=301 Identities=27% Similarity=0.480 Sum_probs=244.4
Q ss_pred cccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCccccccccc
Q 011482 122 IPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFA 199 (484)
Q Consensus 122 ~pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~ 199 (484)
+||.+..+ .+|+++|.||| |++.|++||||+++||+|.+|..+.+..++.|+|++|+|++.
T Consensus 1 ~~l~n~~~---~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~-------------- 63 (320)
T cd05488 1 VPLTNYLN---AQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKA-------------- 63 (320)
T ss_pred CcccccCC---CEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceee--------------
Confidence 46666554 45999999999 999999999999999999999643333457999999999883
Q ss_pred CCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCC-C--CCcCeeeecCCCCCccccc
Q 011482 200 TGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGL-F--GGVSGLMGLGRSDLSLVSQ 276 (484)
Q Consensus 200 ~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~-~--~~~~GIlGLg~~~~Sl~~q 276 (484)
..|.|.+.|++|+. .|.+++|+|++++..++++.|||++...+. + ...+||||||++..+...+
T Consensus 64 ------------~~~~~~~~y~~g~~-~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 64 ------------NGTEFKIQYGSGSL-EGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred ------------CCCEEEEEECCceE-EEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 23699999999985 999999999999999999999999887663 2 3679999999998775432
Q ss_pred h------hh---ccCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEee
Q 011482 277 T------SE---IFGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQ 346 (484)
Q Consensus 277 l------~~---~~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~ 346 (484)
. .. ...++||+||.+. ....|.|+||| +..++. ++++|+|+... .+|.|++++|+||++.+.
T Consensus 131 ~~~~~~l~~qg~i~~~~FS~~L~~~--~~~~G~l~fGg~d~~~~~--g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~ 202 (320)
T cd05488 131 VPPFYNMINQGLLDEPVFSFYLGSS--EEDGGEATFGGIDESRFT--GKITWLPVRRK----AYWEVELEKIGLGDEELE 202 (320)
T ss_pred CCHHHHHHhcCCCCCCEEEEEecCC--CCCCcEEEECCcCHHHcC--CceEEEeCCcC----cEEEEEeCeEEECCEEec
Confidence 2 11 1257899999974 24579999999 556664 88999999864 699999999999998876
Q ss_pred cCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccC
Q 011482 347 ASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVT 426 (484)
Q Consensus 347 ~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 426 (484)
.. ...++|||||++++||++++++|.+++.+.. ...+.+.++ |++.. .+|.|+|+| +|+++.|+++
T Consensus 203 ~~---~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~----~~~~~~~~~-C~~~~-----~~P~i~f~f-~g~~~~i~~~ 268 (320)
T cd05488 203 LE---NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK----SWNGQYTVD-CSKVD-----SLPDLTFNF-DGYNFTLGPF 268 (320)
T ss_pred cC---CCeEEEcCCcccccCCHHHHHHHHHHhCCcc----ccCCcEEee-ccccc-----cCCCEEEEE-CCEEEEECHH
Confidence 44 3689999999999999999999998875432 224556676 98765 799999999 6799999999
Q ss_pred CeEEEEecCCCceEE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 427 GIVYFVKSDASQVCL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 427 ~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
+|+++. ...|+ .+.... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 269 ~y~~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 269 DYTLEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred HheecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 999742 35798 455432 1234799999999999999999999999996
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.7e-51 Score=412.90 Aligned_cols=304 Identities=24% Similarity=0.461 Sum_probs=246.3
Q ss_pred ccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCC----CCCCCCCCCCCCCCCCCcceecCCCcccccc
Q 011482 123 PLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCK----SCYNQQDPVFDPSISPSYKKVLCNSSTCHAL 196 (484)
Q Consensus 123 pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~----~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~ 196 (484)
||.+.. +.+|+++|.||| |++.|++||||+++||+|.+|. .|. .++.|||++|+|++.
T Consensus 3 ~~~n~~---~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~----------- 66 (329)
T cd05485 3 PLSNYM---DAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKK----------- 66 (329)
T ss_pred cceecc---CCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEE-----------
Confidence 555554 456999999999 9999999999999999999996 454 357899999999984
Q ss_pred cccCCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCcc
Q 011482 197 EFATGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLSL 273 (484)
Q Consensus 197 ~~~~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~Sl 273 (484)
..|.|.+.|++|+. .|.+++|+|++++..++++.|||+.+..+ .+ ...+||||||+...+.
T Consensus 67 ---------------~~~~~~i~Y~~g~~-~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (329)
T cd05485 67 ---------------NGTEFAIQYGSGSL-SGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISV 130 (329)
T ss_pred ---------------CCeEEEEEECCceE-EEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccc
Confidence 23699999999985 99999999999999999999999988765 23 3579999999987763
Q ss_pred ------ccchhhc---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCE
Q 011482 274 ------VSQTSEI---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK 343 (484)
Q Consensus 274 ------~~ql~~~---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~ 343 (484)
+.|+... ..++||+||.+..+....|.|+||| +..+|. ++++|+|+... .+|.|.++++.|+++
T Consensus 131 ~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~--g~l~~~p~~~~----~~~~v~~~~i~v~~~ 204 (329)
T cd05485 131 DGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYT--GNFTYLPVTRK----GYWQFKMDSVSVGEG 204 (329)
T ss_pred cCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcc--cceEEEEcCCc----eEEEEEeeEEEECCe
Confidence 2333322 2578999998642223579999999 566664 88999999763 799999999999998
Q ss_pred EeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEE
Q 011482 344 QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTV 423 (484)
Q Consensus 344 ~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 423 (484)
.+... ...+||||||++++||++++++|.+++... ....+.+.++ |+... .+|+|+|+| ||+++.|
T Consensus 205 ~~~~~---~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~~~~~~~-C~~~~-----~~p~i~f~f-gg~~~~i 270 (329)
T cd05485 205 EFCSG---GCQAIADTGTSLIAGPVDEIEKLNNAIGAK----PIIGGEYMVN-CSAIP-----SLPDITFVL-GGKSFSL 270 (329)
T ss_pred eecCC---CcEEEEccCCcceeCCHHHHHHHHHHhCCc----cccCCcEEEe-ccccc-----cCCcEEEEE-CCEEeEE
Confidence 76533 357999999999999999999999887643 1123456665 98755 789999999 7899999
Q ss_pred ccCCeEEEEecCCCceEE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 424 DVTGIVYFVKSDASQVCL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 424 ~~~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
++++|+++....+..+|+ ++.... ...+.||||+.|||++|+|||++++|||||+
T Consensus 271 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 271 TGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999999987544457898 576532 2235799999999999999999999999985
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.6e-51 Score=410.97 Aligned_cols=299 Identities=21% Similarity=0.411 Sum_probs=241.6
Q ss_pred ceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCC--CCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCC
Q 011482 132 TLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSC--YNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCS 207 (484)
Q Consensus 132 ~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C--~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~ 207 (484)
+..|+++|.||| |+++|+|||||+++||+|..|..| .+..++.|||++|+||+.
T Consensus 6 ~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~---------------------- 63 (326)
T cd05487 6 DTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKE---------------------- 63 (326)
T ss_pred CCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeE----------------------
Confidence 456999999999 999999999999999999888653 223467999999999984
Q ss_pred CCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCc----------cc
Q 011482 208 SSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLS----------LV 274 (484)
Q Consensus 208 ~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~S----------l~ 274 (484)
..|.|.+.|++|+. .|.+++|+|++++..++ +.||++..... .+ ...+||||||++..+ |.
T Consensus 64 ----~~~~~~~~Yg~g~~-~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~ 137 (326)
T cd05487 64 ----NGTEFTIHYASGTV-KGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIM 137 (326)
T ss_pred ----CCEEEEEEeCCceE-EEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHH
Confidence 23699999999984 99999999999998875 88999987643 22 368999999998665 23
Q ss_pred cchhhccCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCC
Q 011482 275 SQTSEIFGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKG 353 (484)
Q Consensus 275 ~ql~~~~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~ 353 (484)
+|-. ...++||+||.+..+....|.|+||+ +.++|. ++++|+|+... .+|.|.+++|+|+++.+.... ..
T Consensus 138 ~qg~-i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~--g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~--~~ 208 (326)
T cd05487 138 SQGV-LKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQ--GDFHYINTSKT----GFWQIQMKGVSVGSSTLLCED--GC 208 (326)
T ss_pred hcCC-CCCCEEEEEEeCCCCCCCCcEEEECCcChhhcc--CceEEEECCcC----ceEEEEecEEEECCEEEecCC--CC
Confidence 3322 22578999998652234579999999 666665 89999998754 799999999999998865321 35
Q ss_pred cEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEe
Q 011482 354 GILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVK 433 (484)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 433 (484)
.+||||||++++||++++++|.+++.+... .+.+.++ |+... .+|.|+|+| ||.+++|++++|+++..
T Consensus 209 ~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~~-C~~~~-----~~P~i~f~f-gg~~~~v~~~~yi~~~~ 276 (326)
T cd05487 209 TAVVDTGASFISGPTSSISKLMEALGAKER-----LGDYVVK-CNEVP-----TLPDISFHL-GGKEYTLSSSDYVLQDS 276 (326)
T ss_pred EEEECCCccchhCcHHHHHHHHHHhCCccc-----CCCEEEe-ccccC-----CCCCEEEEE-CCEEEEeCHHHhEEecc
Confidence 799999999999999999999988864321 3456666 98765 789999999 78999999999998764
Q ss_pred cCCCceEE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 434 SDASQVCL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 434 ~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
...+..|+ +|...+ ...+.||||+.|||++|+|||++++|||||++
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 277 DFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 33467897 777542 22357999999999999999999999999985
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-50 Score=406.44 Aligned_cols=295 Identities=26% Similarity=0.490 Sum_probs=237.3
Q ss_pred cccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCC---CCCCCCCCCCCCCCCCCcceecCCCcccccc
Q 011482 122 IPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCK---SCYNQQDPVFDPSISPSYKKVLCNSSTCHAL 196 (484)
Q Consensus 122 ~pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~---~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~ 196 (484)
+||.+..+ .+|+++|.||| |++.|+|||||+++||+|..|. .|.. ++.|||++|+||+..
T Consensus 1 ~~l~n~~~---~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~---------- 65 (317)
T cd06098 1 VALKNYLD---AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYKSSKSSTYKKN---------- 65 (317)
T ss_pred CcccccCC---CEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc--cCcCCcccCCCcccC----------
Confidence 35666544 46999999999 9999999999999999999995 6764 579999999999842
Q ss_pred cccCCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCcc
Q 011482 197 EFATGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLSL 273 (484)
Q Consensus 197 ~~~~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~Sl 273 (484)
+ +.+.+.|++|+. .|.+++|+|++++..++++.||+++...+ .| ...+||||||+...+.
T Consensus 66 ------------~----~~~~i~Yg~G~~-~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~ 128 (317)
T cd06098 66 ------------G----TSASIQYGTGSI-SGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISV 128 (317)
T ss_pred ------------C----CEEEEEcCCceE-EEEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhh
Confidence 2 288999999986 89999999999999999999999997655 23 3689999999987653
Q ss_pred c------cchhh---ccCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCE
Q 011482 274 V------SQTSE---IFGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGK 343 (484)
Q Consensus 274 ~------~ql~~---~~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~ 343 (484)
. .++.. ...++||+||.+..+....|.|+||| +.++|. ++++|+|+... .+|.|.+++|+|+++
T Consensus 129 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~--g~l~~~pv~~~----~~w~v~l~~i~v~g~ 202 (317)
T cd06098 129 GKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFK--GEHTYVPVTRK----GYWQFEMGDVLIGGK 202 (317)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcc--cceEEEecCcC----cEEEEEeCeEEECCE
Confidence 2 12222 12468999998642234579999999 666665 89999999764 699999999999998
Q ss_pred EeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEE
Q 011482 344 QLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTV 423 (484)
Q Consensus 344 ~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 423 (484)
.+.... ....+||||||++++||++++++|. +.++ |++.. .+|+|+|+| +|+.++|
T Consensus 203 ~~~~~~-~~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~-C~~~~-----~~P~i~f~f-~g~~~~l 258 (317)
T cd06098 203 STGFCA-GGCAAIADSGTSLLAGPTTIVTQIN----------------SAVD-CNSLS-----SMPNVSFTI-GGKTFEL 258 (317)
T ss_pred EeeecC-CCcEEEEecCCcceeCCHHHHHhhh----------------ccCC-ccccc-----cCCcEEEEE-CCEEEEE
Confidence 754211 1357999999999999998876653 3455 98765 789999999 6799999
Q ss_pred ccCCeEEEEecCCCceEE-EEEeCC---CCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 424 DVTGIVYFVKSDASQVCL-ALASLS---YEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 424 ~~~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
+|++|+++........|+ +|...+ .....||||+.|||++|+|||++++|||||+
T Consensus 259 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 259 TPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999876433456898 676532 1235799999999999999999999999995
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.8e-50 Score=415.80 Aligned_cols=307 Identities=22% Similarity=0.416 Sum_probs=245.2
Q ss_pred CccccccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCccccc
Q 011482 118 SNTEIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHA 195 (484)
Q Consensus 118 ~~~~~pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~ 195 (484)
....+||.+..+. +|+++|.||| |++.|+|||||+++||+|.+|..|.++.++.|||++|+||+..
T Consensus 126 ~~~~v~L~n~~n~---~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~--------- 193 (453)
T PTZ00147 126 EFDNVELKDLANV---MSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD--------- 193 (453)
T ss_pred CCCeeeccccCCC---EEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC---------
Confidence 3467888877654 5999999999 9999999999999999999998665566789999999999842
Q ss_pred ccccCCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCC---C--CCcCeeeecCCCC
Q 011482 196 LEFATGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGL---F--GGVSGLMGLGRSD 270 (484)
Q Consensus 196 ~~~~~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~---~--~~~~GIlGLg~~~ 270 (484)
.|.|.+.|++|+. .|.+++|+|++|+.+++ ..|+|+.+..+. + ...+||||||+++
T Consensus 194 -----------------~~~f~i~Yg~Gsv-sG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~ 254 (453)
T PTZ00147 194 -----------------GTKVEMNYVSGTV-SGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKD 254 (453)
T ss_pred -----------------CCEEEEEeCCCCE-EEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCc
Confidence 2599999999985 99999999999999988 579998876541 1 2689999999987
Q ss_pred Ccc------ccchhhc---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEE
Q 011482 271 LSL------VSQTSEI---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISI 340 (484)
Q Consensus 271 ~Sl------~~ql~~~---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~v 340 (484)
++. +.+|... ..++||+||++. ....|.|+||| +.++|. +++.|+|+... .+|.|.++ +.+
T Consensus 255 ~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~--~~~~G~L~fGGiD~~ky~--G~l~y~pl~~~----~~W~V~l~-~~v 325 (453)
T PTZ00147 255 LSIGSVDPYVVELKNQNKIEQAVFTFYLPPE--DKHKGYLTIGGIEERFYE--GPLTYEKLNHD----LYWQVDLD-VHF 325 (453)
T ss_pred cccccCCCHHHHHHHcCCCCccEEEEEecCC--CCCCeEEEECCcChhhcC--CceEEEEcCCC----ceEEEEEE-EEE
Confidence 763 2233221 257899999864 34579999999 656665 89999999753 79999998 577
Q ss_pred cCEEeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcE
Q 011482 341 GGKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAE 420 (484)
Q Consensus 341 g~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~ 420 (484)
++... ....+||||||+++++|+++++++.+++.... .+. .+.+..+ |+. . .+|+|+|+| +|..
T Consensus 326 g~~~~-----~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~~~y~~~-C~~-~-----~lP~~~f~f-~g~~ 389 (453)
T PTZ00147 326 GNVSS-----EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-LPLYVTT-CNN-T-----KLPTLEFRS-PNKV 389 (453)
T ss_pred CCEec-----CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-CCeEEEe-CCC-C-----CCCeEEEEE-CCEE
Confidence 76532 13689999999999999999999998885421 111 2334454 985 2 689999999 5799
Q ss_pred EEEccCCeEEEEecCCCceEE-EEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecCC
Q 011482 421 MTVDVTGIVYFVKSDASQVCL-ALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGED 480 (484)
Q Consensus 421 ~~l~~~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~ 480 (484)
++|+|++|+.+........|+ ++++.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 390 ~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 390 YTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999999999765433456897 687765434689999999999999999999999999976
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=6.9e-49 Score=405.65 Aligned_cols=307 Identities=24% Similarity=0.445 Sum_probs=242.2
Q ss_pred CccccccccCccccceeEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCccccc
Q 011482 118 SNTEIPLTSGIRLQTLNYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHA 195 (484)
Q Consensus 118 ~~~~~pl~~~~~~~~~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~ 195 (484)
....+||.+..+. +|+++|.||| |++.|+|||||+++||+|..|..+.++.++.|||++|+|++.
T Consensus 125 ~~~~~~l~d~~n~---~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~---------- 191 (450)
T PTZ00013 125 ENDVIELDDVANI---MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEK---------- 191 (450)
T ss_pred CCCceeeeccCCC---EEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCccccc----------
Confidence 3466788776543 5999999999 999999999999999999999744444567999999999983
Q ss_pred ccccCCCCCCCCCCCCCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC---CC--CCcCeeeecCCCC
Q 011482 196 LEFATGNSGVCSSSSPPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG---LF--GGVSGLMGLGRSD 270 (484)
Q Consensus 196 ~~~~~~~~~~C~~~~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~---~~--~~~~GIlGLg~~~ 270 (484)
..|.|.+.|++|+. .|.+++|+|++|+.+++ ..||++.+..+ .+ ..++||||||+..
T Consensus 192 ----------------~~~~~~i~YG~Gsv-~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 192 ----------------DGTKVDITYGSGTV-KGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred ----------------CCcEEEEEECCceE-EEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCc
Confidence 23599999999985 99999999999999887 68888876543 12 2679999999987
Q ss_pred Ccc------ccchhhc---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEE
Q 011482 271 LSL------VSQTSEI---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISI 340 (484)
Q Consensus 271 ~Sl------~~ql~~~---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~v 340 (484)
++. +.|+... ..++||+||++. ....|.|+||| +.++|. +++.|+|+... .+|.|.++ +.+
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~--~~~~G~L~fGGiD~~~y~--G~L~y~pv~~~----~yW~I~l~-v~~ 324 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVH--DVHAGYLTIGGIEEKFYE--GNITYEKLNHD----LYWQIDLD-VHF 324 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCC--CCCCCEEEECCcCccccc--cceEEEEcCcC----ceEEEEEE-EEE
Confidence 653 3344322 257899999864 34579999999 666665 89999999754 79999998 677
Q ss_pred cCEEeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcE
Q 011482 341 GGKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAE 420 (484)
Q Consensus 341 g~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~ 420 (484)
|..... ...+||||||+++++|+++++++.+++.... .+ ..+.+..+ |+. . .+|+|+|+| +|.+
T Consensus 325 G~~~~~-----~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~-~~~~y~~~-C~~-~-----~lP~i~F~~-~g~~ 388 (450)
T PTZ00013 325 GKQTMQ-----KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VP-FLPFYVTT-CDN-K-----EMPTLEFKS-ANNT 388 (450)
T ss_pred Cceecc-----ccceEECCCCccccCCHHHHHHHHHHhCCee--cC-CCCeEEee-cCC-C-----CCCeEEEEE-CCEE
Confidence 654332 3579999999999999999999998775431 11 23345554 975 2 689999999 6799
Q ss_pred EEEccCCeEEEEecCCCceEE-EEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecCC
Q 011482 421 MTVDVTGIVYFVKSDASQVCL-ALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGED 480 (484)
Q Consensus 421 ~~l~~~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~ 480 (484)
++|+|++|+.+....++..|+ ++.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 389 ~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 389 YTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999998754323456897 777654444689999999999999999999999999975
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4e-49 Score=402.67 Aligned_cols=309 Identities=23% Similarity=0.391 Sum_probs=234.0
Q ss_pred eEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 134 ~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
+|+++|.||| |++.|+|||||+++||+|.+|..| ++.|||++|+||+..
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~------------------------- 53 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDL------------------------- 53 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccC-------------------------
Confidence 5999999999 999999999999999999988433 568999999999842
Q ss_pred CCCeeeEEcCCCceEeEEEEEEEEEecccc-cc-ceEEEEEeccCCCC-C--CcCeeeecCCCCCc------------cc
Q 011482 212 PDCNYFVSYGDGSYTRGELGREHLGLGKAS-VN-DFIFGCGRNNKGLF-G--GVSGLMGLGRSDLS------------LV 274 (484)
Q Consensus 212 ~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~-~~-~~~fG~~~~~~~~~-~--~~~GIlGLg~~~~S------------l~ 274 (484)
.|.|.+.|++|+. .|.+++|+|++++.. +. .+.|++.+...+.+ . ..+||||||++.++ ++
T Consensus 54 -~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 54 -GKGVTVPYTQGSW-EGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred -CceEEEEECcceE-EEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 3699999999987 899999999998532 11 13456766655543 2 57999999998763 44
Q ss_pred cchhhccCCeeEEeeCCC-----C--CCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEee
Q 011482 275 SQTSEIFGGLFSYCLPST-----Q--DAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQ 346 (484)
Q Consensus 275 ~ql~~~~~~~FS~~L~~~-----~--~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~ 346 (484)
+|.. ..++||++|... . .....|.|+||| +..+|. +++.|+|+... .+|.|.+++|+|+++.+.
T Consensus 132 ~q~~--~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~--g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~ 203 (364)
T cd05473 132 KQTG--IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYK--GDIWYTPIREE----WYYEVIILKLEVGGQSLN 203 (364)
T ss_pred hccC--CccceEEEecccccccccccccCCCcEEEeCCcCHhhcC--CCceEEecCcc----eeEEEEEEEEEECCEecc
Confidence 4544 246899987421 0 123479999999 556664 88999999864 799999999999998865
Q ss_pred c--CCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCC---CcccccccccCCCcccccceEEEEEecC---
Q 011482 347 A--SGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPG---FSILDTCFNLSAYQEVNIPLVKMEFEGN--- 418 (484)
Q Consensus 347 ~--~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~P~i~~~f~gg--- 418 (484)
. ..+....+||||||++++||+++|++|.++++++......... .+.+ .|++........+|+|+|+|+|+
T Consensus 204 ~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~P~i~~~f~g~~~~ 282 (364)
T cd05473 204 LDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQL-ACWQKGTTPWEIFPKISIYLRDENSS 282 (364)
T ss_pred cccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCccee-ecccccCchHhhCCcEEEEEccCCCC
Confidence 3 2222247999999999999999999999999987532111111 1224 49875422223689999999752
Q ss_pred --cEEEEccCCeEEEEecC-CCceEEEEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecCCCCC
Q 011482 419 --AEMTVDVTGIVYFVKSD-ASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCSS 483 (484)
Q Consensus 419 --~~~~l~~~~~~~~~~~~-~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C~~ 483 (484)
.++.|+|++|+...... ....|+++..... .+.||||++|||++|+|||.+++|||||+.+|.+
T Consensus 283 ~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~-~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~ 349 (364)
T cd05473 283 QSFRITILPQLYLRPVEDHGTQLDCYKFAISQS-TNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAE 349 (364)
T ss_pred ceEEEEECHHHhhhhhccCCCcceeeEEeeecC-CCceEEeeeeEcceEEEEECCCCEEeeEeccccc
Confidence 47899999998754321 2467986443222 3569999999999999999999999999999975
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1e-48 Score=384.08 Aligned_cols=255 Identities=29% Similarity=0.558 Sum_probs=213.2
Q ss_pred eeEEEEEEEcC--EEEEEEEEcCCCceeEecC-CCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCC
Q 011482 133 LNYIATIELGG--RNMTVIVDTGSDLTWVQCQ-PCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSS 209 (484)
Q Consensus 133 ~~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~-~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~ 209 (484)
|+|+++|.||| |++.|++||||+++||+|. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 46999999999 9999999999999999984 66555
Q ss_pred CCCCCeeeEEcCCCceEeEEEEEEEEEecc----ccccceEEEEEeccCCCC----CCcCeeeecCCCCCccccchhhc-
Q 011482 210 SPPDCNYFVSYGDGSYTRGELGREHLGLGK----ASVNDFIFGCGRNNKGLF----GGVSGLMGLGRSDLSLVSQTSEI- 280 (484)
Q Consensus 210 ~~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~----~~~~~~~fG~~~~~~~~~----~~~~GIlGLg~~~~Sl~~ql~~~- 280 (484)
.|.|.+.|+|++.+.|.+++|+|+++. ..++++.|||+..+.+.+ ...+||||||+++.++++|+...
T Consensus 39 ---~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~ 115 (273)
T cd05475 39 ---QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQG 115 (273)
T ss_pred ---cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcC
Confidence 158999999988889999999999953 467899999998876532 36899999999999999998754
Q ss_pred -cCCeeEEeeCCCCCCCCcceEEecCCCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEEcc
Q 011482 281 -FGGLFSYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDS 359 (484)
Q Consensus 281 -~~~~FS~~L~~~~~~~~~G~L~fGg~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~iiDS 359 (484)
..++||+||++. ..|.|+||++ ..+ .++++|+|+..++. ..+|.|++.+|+||++.+... ...+||||
T Consensus 116 ~i~~~Fs~~l~~~----~~g~l~~G~~-~~~--~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~---~~~~ivDT 184 (273)
T cd05475 116 IIKNVIGHCLSSN----GGGFLFFGDD-LVP--SSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGK---GLEVVFDS 184 (273)
T ss_pred CcCceEEEEccCC----CCeEEEECCC-CCC--CCCeeecccccCCC-CCeEEEeEeEEEECCEECcCC---CceEEEEC
Confidence 257899999853 3699999853 333 37899999987642 369999999999999865432 46899999
Q ss_pred cccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecC---cEEEEccCCeEEEEecCC
Q 011482 360 GTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGN---AEMTVDVTGIVYFVKSDA 436 (484)
Q Consensus 360 GTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~ 436 (484)
||++++||+++| +|+|+|+|+++ ++++|++++|++.. ..
T Consensus 185 GTt~t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~--~~ 226 (273)
T cd05475 185 GSSYTYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIIS--EK 226 (273)
T ss_pred CCceEEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEc--CC
Confidence 999999999876 47999999654 79999999999864 34
Q ss_pred CceEEEEEeCCC--CCCceEEchhhhcceEEEEECCCCEEEEecCCC
Q 011482 437 SQVCLALASLSY--EDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDC 481 (484)
Q Consensus 437 ~~~Cl~~~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C 481 (484)
+..|+++..... ..+.||||+.|||++|++||++++|||||+++|
T Consensus 227 ~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 227 GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 568998875432 235799999999999999999999999999999
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.6e-47 Score=372.69 Aligned_cols=253 Identities=47% Similarity=0.825 Sum_probs=217.0
Q ss_pred eEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 134 ~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
+|+++|.||| |++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C--------------------------------------------
Confidence 5999999999 999999999999999986 1
Q ss_pred CCCeeeEEcCCCceEeEEEEEEEEEeccc--cccceEEEEEeccCC-CCCCcCeeeecCCCCCccccchhhccCCeeEEe
Q 011482 212 PDCNYFVSYGDGSYTRGELGREHLGLGKA--SVNDFIFGCGRNNKG-LFGGVSGLMGLGRSDLSLVSQTSEIFGGLFSYC 288 (484)
Q Consensus 212 ~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~--~~~~~~fG~~~~~~~-~~~~~~GIlGLg~~~~Sl~~ql~~~~~~~FS~~ 288 (484)
.|.+.|+||+...|.+++|+|+|++. .++++.|||+....+ ....++||||||+...|+++|+... +++||+|
T Consensus 32 ---~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~-~~~Fs~~ 107 (265)
T cd05476 32 ---SYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGST-GNKFSYC 107 (265)
T ss_pred ---ceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcc-cCeeEEE
Confidence 67789999988899999999999998 899999999999876 2237899999999999999999876 3899999
Q ss_pred eCCCCCCCCcceEEecCCCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeec--C-----CCCCCcEEEcccc
Q 011482 289 LPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQA--S-----GFAKGGILIDSGT 361 (484)
Q Consensus 289 L~~~~~~~~~G~L~fGg~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~--~-----~~~~~~~iiDSGT 361 (484)
|.+..+....|+|+||+.+..+. +++.|+|++.++....+|.|++++|+|+++.+.. . ......+||||||
T Consensus 108 l~~~~~~~~~G~l~fGg~d~~~~--~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAADLGG--SGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred ccCCCCCCCCCeEEECCcccccC--CCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 98642245689999999544354 8999999998643447999999999999998641 1 1124689999999
Q ss_pred cccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCceEE
Q 011482 362 VITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCL 441 (484)
Q Consensus 362 t~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~Cl 441 (484)
++++||+++| |.|+|+|+||+++.+++++|++.. ..+..|+
T Consensus 186 s~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~--~~~~~C~ 226 (265)
T cd05476 186 TLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDV--GEGVVCL 226 (265)
T ss_pred cceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEEC--CCCCEEE
Confidence 9999999887 789999965899999999999854 4567899
Q ss_pred EEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecCCC
Q 011482 442 ALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDC 481 (484)
Q Consensus 442 ~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~~C 481 (484)
++.... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 227 ~~~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 227 AILSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 888753 347899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-46 Score=370.40 Aligned_cols=262 Identities=25% Similarity=0.410 Sum_probs=218.4
Q ss_pred EEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCC
Q 011482 135 YIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPP 212 (484)
Q Consensus 135 Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~ 212 (484)
|+++|.||+ |++.|+|||||+++||+|..|..|..+.++.|||++|+|++.. .
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~-------------------------~ 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLL-------------------------P 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceec-------------------------C
Confidence 789999999 9999999999999999999999998887889999999999842 2
Q ss_pred CCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC-CC--CCcCeeeecCCCCCcccc---------chhhc
Q 011482 213 DCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG-LF--GGVSGLMGLGRSDLSLVS---------QTSEI 280 (484)
Q Consensus 213 ~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~-~~--~~~~GIlGLg~~~~Sl~~---------ql~~~ 280 (484)
.|.|.+.|++|+.+.|.+++|+|++++..++++.|||++...+ .+ ...+||||||+...+... ++...
T Consensus 56 ~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~ 135 (278)
T cd06097 56 GATWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSS 135 (278)
T ss_pred CcEEEEEeCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHh
Confidence 3699999999997799999999999999999999999998765 22 378999999998765432 22221
Q ss_pred -cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEEc
Q 011482 281 -FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358 (484)
Q Consensus 281 -~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~iiD 358 (484)
..++||+||.+ ...|.|+||| ++.+|. ++++|+|+..+ ..+|.|++++|.||++.+... ....+|||
T Consensus 136 ~~~~~Fs~~l~~----~~~G~l~fGg~D~~~~~--g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~--~~~~~iiD 204 (278)
T cd06097 136 LDAPLFTADLRK----AAPGFYTFGYIDESKYK--GEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSR--SGFSAIAD 204 (278)
T ss_pred ccCceEEEEecC----CCCcEEEEeccChHHcC--CceEEEEccCC---CcEEEEEEeeEEECCcceeec--CCceEEee
Confidence 13689999985 2479999999 666664 89999999874 279999999999999853221 24689999
Q ss_pred ccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCc
Q 011482 359 SGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQ 438 (484)
Q Consensus 359 SGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~ 438 (484)
|||+++++|++++++|.+++... .+....+.+.++ |.. .+|+|+|+|
T Consensus 205 SGTs~~~lP~~~~~~l~~~l~g~--~~~~~~~~~~~~-C~~-------~~P~i~f~~----------------------- 251 (278)
T cd06097 205 TGTTLILLPDAIVEAYYSQVPGA--YYDSEYGGWVFP-CDT-------TLPDLSFAV----------------------- 251 (278)
T ss_pred cCCchhcCCHHHHHHHHHhCcCC--cccCCCCEEEEE-CCC-------CCCCEEEEE-----------------------
Confidence 99999999999999999887432 122334566776 985 389999998
Q ss_pred eEEEEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 439 VCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 439 ~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
.||||++|||++|+|||++++|||||+
T Consensus 252 -------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1e-44 Score=359.90 Aligned_cols=271 Identities=23% Similarity=0.454 Sum_probs=224.1
Q ss_pred eEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 134 ~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
.|+++|.||+ |++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 4999999999 99999999999999997
Q ss_pred CCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCCCCcCeeeecCCCCC-----------ccccchhhc
Q 011482 212 PDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDL-----------SLVSQTSEI 280 (484)
Q Consensus 212 ~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~~~~~GIlGLg~~~~-----------Sl~~ql~~~ 280 (484)
.|.+.|++|+.+.|.+++|+|++++..++++.|||+++.. ..+||||||+... +++.|+...
T Consensus 31 ---~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 31 ---DFSISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred ---eeEEEeccCCcEEEEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 3457899988889999999999999999999999999843 5789999999886 567777653
Q ss_pred ---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCC--CCceEEEEEeEEEEcCEEeecC-CCCCC
Q 011482 281 ---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQ--LATFYILNLTGISIGGKQLQAS-GFAKG 353 (484)
Q Consensus 281 ---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~--~~~~y~v~l~~i~vg~~~i~~~-~~~~~ 353 (484)
..++||+||.+. ....|.|+||| +..+|. +++.|+|+..++. .+.+|.|++++|+|+++.+... .....
T Consensus 104 g~i~~~~Fsl~l~~~--~~~~g~l~~Gg~d~~~~~--g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 179 (295)
T cd05474 104 GLIKKNAYSLYLNDL--DASTGSILFGGVDTAKYS--GDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNL 179 (295)
T ss_pred CcccceEEEEEeCCC--CCCceeEEEeeeccceee--ceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCc
Confidence 246899999964 34579999999 556664 8899999987642 2468999999999999875311 11247
Q ss_pred cEEEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEe
Q 011482 354 GILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVK 433 (484)
Q Consensus 354 ~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 433 (484)
.++|||||++++||++++++|.+++.+.... ..+.+.++ |+... . |+|+|+| +|++++|++++|+++..
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~---~~~~~~~~-C~~~~-----~-p~i~f~f-~g~~~~i~~~~~~~~~~ 248 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS---DEGLYVVD-CDAKD-----D-GSLTFNF-GGATISVPLSDLVLPAS 248 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC---CCcEEEEe-CCCCC-----C-CEEEEEE-CCeEEEEEHHHhEeccc
Confidence 8999999999999999999999999876432 24456665 99754 4 9999999 56999999999998763
Q ss_pred c--CCCceEE-EEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 434 S--DASQVCL-ALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 434 ~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
. ..+..|+ +|.+.+. +.||||++|||++|++||.+++|||||++
T Consensus 249 ~~~~~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 249 TDDGGDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred cCCCCCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 2 2367896 7887653 68999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8.9e-45 Score=363.46 Aligned_cols=296 Identities=26% Similarity=0.536 Sum_probs=245.4
Q ss_pred eEEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCC-CCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCC
Q 011482 134 NYIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSC-YNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSS 210 (484)
Q Consensus 134 ~Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C-~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~ 210 (484)
+|+++|.||+ |++.|++||||+.+||++..|..| .......|+|.+|+|++.. +
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~----------------------~- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQ----------------------G- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEE----------------------E-
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccc----------------------e-
Confidence 5999999999 999999999999999999999776 4455679999999999853 2
Q ss_pred CCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCC---CCCcCeeeecCCCCC-------ccccchhhc
Q 011482 211 PPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGL---FGGVSGLMGLGRSDL-------SLVSQTSEI 280 (484)
Q Consensus 211 ~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~---~~~~~GIlGLg~~~~-------Sl~~ql~~~ 280 (484)
+.+.+.|++|+ ++|.+++|+|++++..++++.||++....+. ....+||||||+... +++.|+...
T Consensus 58 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 58 ---KPFSISYGDGS-VSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp ---EEEEEEETTEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred ---eeeeeeccCcc-cccccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhh
Confidence 38999999999 6999999999999999999999999997552 357899999997543 345555544
Q ss_pred ---cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEE-eecCCCCCCcE
Q 011482 281 ---FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQ-LQASGFAKGGI 355 (484)
Q Consensus 281 ---~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~-i~~~~~~~~~~ 355 (484)
..++||++|.+. + ...|.|+||| +.++|. ++++|+|+... .+|.|.+++|.++++. +... ...+
T Consensus 134 g~i~~~~fsl~l~~~-~-~~~g~l~~Gg~d~~~~~--g~~~~~~~~~~----~~w~v~~~~i~i~~~~~~~~~---~~~~ 202 (317)
T PF00026_consen 134 GLISSNVFSLYLNPS-D-SQNGSLTFGGYDPSKYD--GDLVWVPLVSS----GYWSVPLDSISIGGESVFSSS---GQQA 202 (317)
T ss_dssp TSSSSSEEEEEEEST-T-SSEEEEEESSEEGGGEE--SEEEEEEBSST----TTTEEEEEEEEETTEEEEEEE---EEEE
T ss_pred ccccccccceeeeec-c-cccchheeecccccccc--CceeccCcccc----ccccccccccccccccccccc---ceee
Confidence 257899999976 2 5689999999 667775 89999999954 7999999999999993 3332 2479
Q ss_pred EEcccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecC
Q 011482 356 LIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSD 435 (484)
Q Consensus 356 iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 435 (484)
+|||||++++||++++++|++++...... +.+.++ |.... .+|.|+|+| ++.+++|++++|+++....
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----~~~~~~-c~~~~-----~~p~l~f~~-~~~~~~i~~~~~~~~~~~~ 270 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYSD-----GVYSVP-CNSTD-----SLPDLTFTF-GGVTFTIPPSDYIFKIEDG 270 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEEC-----SEEEEE-TTGGG-----GSEEEEEEE-TTEEEEEEHHHHEEEESST
T ss_pred ecccccccccccchhhHHHHhhhcccccc-----eeEEEe-ccccc-----ccceEEEee-CCEEEEecchHhccccccc
Confidence 99999999999999999999999876432 556676 98765 789999999 6899999999999887654
Q ss_pred CCceEE-EEEeC--CCCCCceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 436 ASQVCL-ALASL--SYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 436 ~~~~Cl-~~~~~--~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
....|+ +|... ......+|||.+|||++|++||.+++|||||++
T Consensus 271 ~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 271 NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 455897 56662 233578999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-42 Score=342.26 Aligned_cols=267 Identities=33% Similarity=0.646 Sum_probs=219.4
Q ss_pred EEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCC--CCCCCCCCcceecCCCcccccccccCCCCCCCCCCC
Q 011482 135 YIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPV--FDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSS 210 (484)
Q Consensus 135 Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~--ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~ 210 (484)
|+++|.||+ |++.|++||||+++||+|..|..|..+.... |++..|+++.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~-------------------------- 54 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYK-------------------------- 54 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceee--------------------------
Confidence 789999999 9999999999999999999998887765555 6777776655
Q ss_pred CCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCC--CCCCcCeeeecCCCC------Cccccchhhc--
Q 011482 211 PPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKG--LFGGVSGLMGLGRSD------LSLVSQTSEI-- 280 (484)
Q Consensus 211 ~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~--~~~~~~GIlGLg~~~------~Sl~~ql~~~-- 280 (484)
+..|.|.+.|++|+. .|.+++|+|++++..++++.|||++...+ .....+||||||+.. .+++.|+...
T Consensus 55 ~~~~~~~~~Y~~g~~-~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 55 DTGCTFSITYGDGSV-TGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred cCCCEEEEEECCCeE-EEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 245899999999876 89999999999999999999999999876 234789999999998 6788888765
Q ss_pred -cCCeeEEeeCCCCCCCCcceEEecC-CCccccCCCCeEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEEc
Q 011482 281 -FGGLFSYCLPSTQDAGASGSLILGG-NSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILID 358 (484)
Q Consensus 281 -~~~~FS~~L~~~~~~~~~G~L~fGg-~~~~~~~~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~iiD 358 (484)
..++||+||.+..+....|.|+||+ +..++ .+++.|+|++.. ...+|.|.+++|.|++..... ......++||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~--~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~-~~~~~~~iiD 208 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKY--TGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVIS-SSGGGGAIVD 208 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCcccc--CCceEEEecCCC--CCCEEEEEeCeEEECCceeee-cCCCcEEEEe
Confidence 2488999999742135689999999 44444 489999999985 237999999999999974111 1124789999
Q ss_pred ccccccccCHHHHHHHHHHHHHhhcCCCCCCCCcccccccccCCCcccccceEEEEEecCcEEEEccCCeEEEEecCCCc
Q 011482 359 SGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNLSAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQ 438 (484)
Q Consensus 359 SGTt~t~Lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~ 438 (484)
|||++++||+++|++|.+++.+.... ....+... |.... .+|.|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~---~~~~~~~~-~~~~~-----~~p~i~f~f----------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS---SDGGYGVD-CSPCD-----TLPDITFTF----------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc---cCCcEEEe-CcccC-----cCCCEEEEE-----------------------
Confidence 99999999999999999999876543 12223333 55544 899999999
Q ss_pred eEEEEEeCCCCCCceEEchhhhcceEEEEECCCCEEEEec
Q 011482 439 VCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAG 478 (484)
Q Consensus 439 ~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGFa~ 478 (484)
.+|||++|||++|++||.++++||||+
T Consensus 257 -------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.4e-31 Score=242.10 Aligned_cols=157 Identities=48% Similarity=0.878 Sum_probs=129.1
Q ss_pred EEEEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCC
Q 011482 135 YIATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPP 212 (484)
Q Consensus 135 Y~~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~ 212 (484)
|+++|.||| |++.|+|||||+++|++| .++.|+|++|+||+.++|.++.|...... ...|... +.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~---~~~~~~~-~~ 67 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF---CPCCCCS-NN 67 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSS---BTCCTCE-SS
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccc---cccCCCC-cC
Confidence 899999999 999999999999999999 36799999999999999999999977542 2233333 47
Q ss_pred CCeeeEEcCCCceEeEEEEEEEEEecc-----ccccceEEEEEeccCCCCCCcCeeeecCCCCCccccchhhccCCeeEE
Q 011482 213 DCNYFVSYGDGSYTRGELGREHLGLGK-----ASVNDFIFGCGRNNKGLFGGVSGLMGLGRSDLSLVSQTSEIFGGLFSY 287 (484)
Q Consensus 213 ~C~~~~~Ygdgs~~~G~~~~Dtltlg~-----~~~~~~~fG~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~~~~~~~FS~ 287 (484)
.|.|.+.|+|++.+.|.+++|+|+++. ..+.++.|||++...+.+..++||||||++++||++|+.....++|||
T Consensus 68 ~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSy 147 (164)
T PF14543_consen 68 SCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSY 147 (164)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEE
T ss_pred cccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEE
Confidence 899999999999999999999999975 457899999999999988899999999999999999998777889999
Q ss_pred eeCCCCCCCCcceEEecC
Q 011482 288 CLPSTQDAGASGSLILGG 305 (484)
Q Consensus 288 ~L~~~~~~~~~G~L~fGg 305 (484)
||++. +....|.|+||+
T Consensus 148 CL~~~-~~~~~g~l~fG~ 164 (164)
T PF14543_consen 148 CLPSS-SPSSSGFLSFGD 164 (164)
T ss_dssp EB-S--SSSSEEEEEECS
T ss_pred ECCCC-CCCCCEEEEeCc
Confidence 99983 467799999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=4.8e-27 Score=212.16 Aligned_cols=147 Identities=41% Similarity=0.715 Sum_probs=118.2
Q ss_pred eEEEEEeEEEEcCEEee--cCCC----CCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCC--C-CCCCccccccccc
Q 011482 330 FYILNLTGISIGGKQLQ--ASGF----AKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFP--S-APGFSILDTCFNL 400 (484)
Q Consensus 330 ~y~v~l~~i~vg~~~i~--~~~~----~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~--~-~~~~~~~~~C~~~ 400 (484)
+|+|+|.+|+||+++++ ...| +.+++||||||++|+||+++|++|+++|.+++.... + ......+++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999954 5544 468999999999999999999999999999987653 1 3445567789998
Q ss_pred CC----CcccccceEEEEEecCcEEEEccCCeEEEEecCCCceEEEEEeC-CCCCCceEEchhhhcceEEEEECCCCEEE
Q 011482 401 SA----YQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASL-SYEDETGIIGNYQQKNQRVIYDTKNSQLG 475 (484)
Q Consensus 401 ~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~Cl~~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~~IG 475 (484)
++ .....+|+|+|||+||++++|++++|++... ++.+|++|... .+..+.+|||+.+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87 3557899999999989999999999999873 56899999987 33457899999999999999999999999
Q ss_pred Eec
Q 011482 476 FAG 478 (484)
Q Consensus 476 Fa~ 478 (484)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 997
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=1.2e-21 Score=165.09 Aligned_cols=103 Identities=31% Similarity=0.654 Sum_probs=91.8
Q ss_pred EEEEEcC--EEEEEEEEcCCCceeEecCCCCCCCCCCCCCC-CCCCCCCcceecCCCcccccccccCCCCCCCCCCCCCC
Q 011482 137 ATIELGG--RNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVF-DPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPD 213 (484)
Q Consensus 137 ~~v~iGt--q~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~y-dps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~~ 213 (484)
++|.||+ |++.|+|||||+++||+|.+|..|..+..+.| +|++|++++. ..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~--------------------------~~ 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSD--------------------------NG 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCC--------------------------CC
Confidence 4799999 99999999999999999999998877767777 9999999883 34
Q ss_pred CeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCC---CCcCeeeec
Q 011482 214 CNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLF---GGVSGLMGL 266 (484)
Q Consensus 214 C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~---~~~~GIlGL 266 (484)
|.|.+.|++|+. .|.+++|+|+|++..++++.|||++...+.+ ...+|||||
T Consensus 55 ~~~~~~Y~~g~~-~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 55 CTFSITYGTGSL-SGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred cEEEEEeCCCeE-EEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 799999999986 7999999999999999999999999998743 468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.18 E-value=6.7e-06 Score=66.73 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=69.2
Q ss_pred eEEEEEEEcCEEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCCC
Q 011482 134 NYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPD 213 (484)
Q Consensus 134 ~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~~ 213 (484)
.|++++.|+.+++.+++|||++.+|+.-.-...+.. ... ..
T Consensus 2 ~~~v~v~i~~~~~~~llDTGa~~s~i~~~~~~~l~~------------~~~-----------------------~~---- 42 (96)
T cd05483 2 HFVVPVTINGQPVRFLLDTGASTTVISEELAERLGL------------PLT-----------------------LG---- 42 (96)
T ss_pred cEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCC------------Ccc-----------------------CC----
Confidence 589999999999999999999999987542111110 000 11
Q ss_pred CeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCCCCcCeeeecCC
Q 011482 214 CNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLFGGVSGLMGLGR 268 (484)
Q Consensus 214 C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~~~~~GIlGLg~ 268 (484)
....+...+|.........+.+++|+..++++.+........ ..+||||+.+
T Consensus 43 ~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCCCccceEEEcceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 156677788887677777999999999999888888876553 6799999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.78 E-value=0.007 Score=51.68 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred ceeEEEEEEEcCEEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 132 TLNYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 132 ~~~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
+|.|++++.|..+++.++||||++.+-+...--... -.++.. ...
T Consensus 9 ~g~~~v~~~InG~~~~flVDTGAs~t~is~~~A~~L------gl~~~~----------------------------~~~- 53 (121)
T TIGR02281 9 DGHFYATGRVNGRNVRFLVDTGATSVALNEEDAQRL------GLDLNR----------------------------LGY- 53 (121)
T ss_pred CCeEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHc------CCCccc----------------------------CCc-
Confidence 468999999999999999999999998764311100 011100 000
Q ss_pred CCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCCCCcCeeeecCC
Q 011482 212 PDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLFGGVSGLMGLGR 268 (484)
Q Consensus 212 ~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~~~~~GIlGLg~ 268 (484)
...+.=..|......+.-|.+++|+..++|+.+....... ..+|+||+.+
T Consensus 54 ---~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 54 ---TVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred ---eEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCc----CCceEcCHHH
Confidence 2333334566545566899999999999999988775432 1379999854
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.58 E-value=0.018 Score=45.74 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=56.9
Q ss_pred EEEEEcCEEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCCCCee
Q 011482 137 ATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPPDCNY 216 (484)
Q Consensus 137 ~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~~C~~ 216 (484)
+++.|+.+++.+++|||++.+.+.-.-...... .+.. .....
T Consensus 1 V~v~vng~~~~~liDTGa~~~~i~~~~~~~l~~------~~~~--------------------------------~~~~~ 42 (90)
T PF13650_consen 1 VPVKVNGKPVRFLIDTGASISVISRSLAKKLGL------KPRP--------------------------------KSVPI 42 (90)
T ss_pred CEEEECCEEEEEEEcCCCCcEEECHHHHHHcCC------CCcC--------------------------------CceeE
Confidence 467888899999999999988776442211100 0000 00123
Q ss_pred eEEcCCCceEeEEEEEEEEEeccccccceEEEEEeccCCCCCCcCeeeecC
Q 011482 217 FVSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLFGGVSGLMGLG 267 (484)
Q Consensus 217 ~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~~~~~GIlGLg 267 (484)
.+.-.+|.........+.+++|+..+.++.|-.... ....+||||+-
T Consensus 43 ~~~~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 43 SVSGAGGSVTVYRGRVDSITIGGITLKNVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EEEeCCCCEEEEEEEEEEEEECCEEEEeEEEEEECC----CCCCEEEeCCc
Confidence 333345555556677779999999988888877762 23568999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.38 E-value=0.15 Score=43.57 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=59.4
Q ss_pred eeEEEEEEEcCEEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCCC
Q 011482 133 LNYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSPP 212 (484)
Q Consensus 133 ~~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~~ 212 (484)
..+++++.|+.+++.+++|||++.+++.-.-+..+.-+. .. ..
T Consensus 15 ~~~~v~~~Ing~~~~~LvDTGAs~s~Is~~~a~~lgl~~------~~----------------------------~~--- 57 (124)
T cd05479 15 PMLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMR------LI----------------------------DK--- 57 (124)
T ss_pred eEEEEEEEECCEEEEEEEeCCCceEEeCHHHHHHcCCcc------cc----------------------------Cc---
Confidence 458999999999999999999999998655333222110 00 00
Q ss_pred CCeee-EEcC-CCceEeEEEEEEEEEeccccccceEEEEEeccCCCCCCcCeeeecCC
Q 011482 213 DCNYF-VSYG-DGSYTRGELGREHLGLGKASVNDFIFGCGRNNKGLFGGVSGLMGLGR 268 (484)
Q Consensus 213 ~C~~~-~~Yg-dgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~~~~~~~~~GIlGLg~ 268 (484)
.+. ...+ ++....|....+.+.+++..++ +.|...... ..|+|||+-+
T Consensus 58 --~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 58 --RFQGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred --ceEEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC-----CcCEEecHHH
Confidence 122 1223 2334567777888999998875 677655433 5689999743
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.02 E-value=0.26 Score=42.17 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHHHHHHHHhhcCCC-CCCCCcccccccccCCCcccccceEEEEEe
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFP-SAPGFSILDTCFNLSAYQEVNIPLVKMEFE 416 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 416 (484)
+.|+|..+ .+++|||.+.+.++++..+++--..... ..+. ...+..... |.. ......+.+
T Consensus 21 ~~Ing~~~--------~~LvDTGAs~s~Is~~~a~~lgl~~~~~-~~~~~~~~g~g~~~-~~g-------~~~~~~l~i- 82 (124)
T cd05479 21 VEINGVPV--------KAFVDSGAQMTIMSKACAEKCGLMRLID-KRFQGIAKGVGTQK-ILG-------RIHLAQVKI- 82 (124)
T ss_pred EEECCEEE--------EEEEeCCCceEEeCHHHHHHcCCccccC-cceEEEEecCCCcE-EEe-------EEEEEEEEE-
Confidence 56677653 5799999999999999887753110000 0000 000100010 100 223444555
Q ss_pred cCcEEEEccCCeEEEEecCCCceEEEEEeCCCCCCceEEchhhhcceEEEEECCCCEEEE
Q 011482 417 GNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGF 476 (484)
Q Consensus 417 gg~~~~l~~~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~~IGF 476 (484)
||..+.+ ++ .+.+.. ....|||..||+.+-.+.|+.+++|-|
T Consensus 83 ~~~~~~~---~~-------------~Vl~~~--~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 83 GNLFLPC---SF-------------TVLEDD--DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CCEEeee---EE-------------EEECCC--CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 3333221 11 122222 245799999999999999999998853
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.22 E-value=0.17 Score=40.53 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.6
Q ss_pred EEEEEEEcCEEEEEEEEcCCCceeEecC
Q 011482 135 YIATIELGGRNMTVIVDTGSDLTWVQCQ 162 (484)
Q Consensus 135 Y~~~v~iGtq~~~vivDTGS~~~Wv~~~ 162 (484)
|++++.|+.+++.+++||||+.+++.-+
T Consensus 1 ~~~~~~Ing~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNGKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECCEEEEEEEcCCcceEEeCHH
Confidence 5789999999999999999999999765
No 33
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.96 E-value=2 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred CceEEchhhhcceEEEEECCCCEE
Q 011482 451 ETGIIGNYQQKNQRVIYDTKNSQL 474 (484)
Q Consensus 451 ~~~IlG~~fl~~~~vvfD~~~~~I 474 (484)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999988753
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=89.23 E-value=2.8 Score=33.16 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.3
Q ss_pred EEEEcCEEEEEEEEcCCCceeEecCC
Q 011482 138 TIELGGRNMTVIVDTGSDLTWVQCQP 163 (484)
Q Consensus 138 ~v~iGtq~~~vivDTGS~~~Wv~~~~ 163 (484)
.+.|..+++.+++|||++.+-+....
T Consensus 2 ~v~InG~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVEGVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEECCEEEEEEEECCCCeEEECHHH
Confidence 57788899999999999999987553
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.83 E-value=0.73 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.0
Q ss_pred ceeEEEEEEEcCEEEEEEEEcCCCceeEecCCC
Q 011482 132 TLNYIATIELGGRNMTVIVDTGSDLTWVQCQPC 164 (484)
Q Consensus 132 ~~~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C 164 (484)
.+.+++++.||.+.+.+++|||++...|...-+
T Consensus 6 ~g~~~v~~~I~g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIGGVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEECCEEEEEEEeCCCcceecCHHHH
Confidence 457999999999999999999999999887654
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=88.70 E-value=8.2 Score=38.97 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEEE-cC---EEE-EEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCCC
Q 011482 137 ATIEL-GG---RNM-TVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSSP 211 (484)
Q Consensus 137 ~~v~i-Gt---q~~-~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~~ 211 (484)
++|-+ |+ |.+ +|+|||||.=+=|.... -.++-...++
T Consensus 28 VtVC~PGts~CqTIdnvlVDTGS~GLRi~~sA--------------l~~~l~~~Lp------------------------ 69 (370)
T PF11925_consen 28 VTVCAPGTSNCQTIDNVLVDTGSYGLRIFASA--------------LPSSLAGSLP------------------------ 69 (370)
T ss_pred EEEeCCCCCCceeeCcEEEeccchhhhHHHhh--------------hchhhhccCC------------------------
Q ss_pred CCCeee---------EEcCCCceEeEEEEEEEEEeccccccceEEEEEecc-----------------CCCCCCcCeeee
Q 011482 212 PDCNYF---------VSYGDGSYTRGELGREHLGLGKASVNDFIFGCGRNN-----------------KGLFGGVSGLMG 265 (484)
Q Consensus 212 ~~C~~~---------~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~~~~-----------------~~~~~~~~GIlG 265 (484)
.-. ..|++|.. =|-+.+-+|+|++....++++-...+. .-...+++||||
T Consensus 70 ---~~t~~g~~laEC~~F~sgyt-WGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILG 145 (370)
T PF11925_consen 70 ---QQTGGGAPLAECAQFASGYT-WGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILG 145 (370)
T ss_pred ---cccCCCcchhhhhhccCccc-ccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEe
Q ss_pred cCCCCCc-----------------------------cccchhhcc------CCeeEEeeCCC---CCCCCcceEEecCCC
Q 011482 266 LGRSDLS-----------------------------LVSQTSEIF------GGLFSYCLPST---QDAGASGSLILGGNS 307 (484)
Q Consensus 266 Lg~~~~S-----------------------------l~~ql~~~~------~~~FS~~L~~~---~~~~~~G~L~fGg~~ 307 (484)
+|.-+.. +-.|..... .+---+-|+.- ...+..|.|+||=..
T Consensus 146 Ig~~~~DcG~~C~~sa~~~~YY~C~~~~sCt~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgT 225 (370)
T PF11925_consen 146 IGPFPYDCGAACAQSALPGNYYSCPSGGSCTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGT 225 (370)
T ss_pred ecCCccccCchhhcccCCCceEECCCCCCeecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCC
Q ss_pred ccccCCCC-eEEeeCcCCCCCCceEEEEEeEEEEcCEEeecCCCCCCcEEEcccccccccCHH
Q 011482 308 SVFKNSTP-ITYTNMIPNPQLATFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPS 369 (484)
Q Consensus 308 ~~~~~~~~-~~~~pl~~~~~~~~~y~v~l~~i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~ 369 (484)
..-..-+. ....+.... .+..-..+|-.+. ...||||+.-.++|..
T Consensus 226 QsNN~l~~~~~~~~~~~~----G~~tt~~~G~t~~------------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 226 QSNNALPSGATVLTTDSN----GDFTTTFNGQTYS------------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred cccCcccccceEEeecCC----ceEEEEecCceee------------eeeEecCCceeeccCC
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=88.51 E-value=0.82 Score=39.75 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=26.1
Q ss_pred CceEEchhhhcceEEEEECCCCEEEEecC
Q 011482 451 ETGIIGNYQQKNQRVIYDTKNSQLGFAGE 479 (484)
Q Consensus 451 ~~~IlG~~fl~~~~vvfD~~~~~IGFa~~ 479 (484)
-..|||..+|+.+...-|..+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 35899999999999999999999999753
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.82 E-value=1.4 Score=35.77 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=24.9
Q ss_pred EEEEEEcCEEEEEEEEcCCCceeEecCC
Q 011482 136 IATIELGGRNMTVIVDTGSDLTWVQCQP 163 (484)
Q Consensus 136 ~~~v~iGtq~~~vivDTGS~~~Wv~~~~ 163 (484)
+++|.|..+++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKINGKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEETTEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeECCEEEEEEEecCCCcceecccc
Confidence 4789999999999999999999987653
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=82.43 E-value=3.6 Score=37.97 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=58.1
Q ss_pred cceeEEEEEEEcCEEEEEEEEcCCCceeEecCCCCCCCCCCCCCCCCCCCCCcceecCCCcccccccccCCCCCCCCCCC
Q 011482 131 QTLNYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSCYNQQDPVFDPSISPSYKKVLCNSSTCHALEFATGNSGVCSSSS 210 (484)
Q Consensus 131 ~~~~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C~~~~~~~ydps~Sst~~~v~C~s~~C~~~~~~~~~~~~C~~~~ 210 (484)
.+|.|.++..|-.|++..++|||-+.+-+.-..-. .--||..+ .+
T Consensus 102 ~~GHF~a~~~VNGk~v~fLVDTGATsVal~~~dA~------RlGid~~~----------------------------l~- 146 (215)
T COG3577 102 RDGHFEANGRVNGKKVDFLVDTGATSVALNEEDAR------RLGIDLNS----------------------------LD- 146 (215)
T ss_pred CCCcEEEEEEECCEEEEEEEecCcceeecCHHHHH------HhCCCccc----------------------------cC-
Confidence 46789999999999999999999998877644210 01233221 11
Q ss_pred CCCCeeeEEcCCCceEeEEEEEEEEEeccccccceEEEEE
Q 011482 211 PPDCNYFVSYGDGSYTRGELGREHLGLGKASVNDFIFGCG 250 (484)
Q Consensus 211 ~~~C~~~~~Ygdgs~~~G~~~~Dtltlg~~~~~~~~fG~~ 250 (484)
-++.+.-.+|....-.+-.|.|.+|+..+.|+.=-.+
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEccEEEcCchhhee
Confidence 1566666788886677889999999998886654433
No 40
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.24 E-value=3 Score=33.22 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.9
Q ss_pred EEEEcCEEEEEEEEcCCCceeEecC
Q 011482 138 TIELGGRNMTVIVDTGSDLTWVQCQ 162 (484)
Q Consensus 138 ~v~iGtq~~~vivDTGS~~~Wv~~~ 162 (484)
++.|+.|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYINGKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECCEEEEEEEccCCCCeEEccc
Confidence 5778889999999999999998754
No 41
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=75.35 E-value=4.6 Score=34.27 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.9
Q ss_pred ceEEEEEeEEEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 329 TFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 329 ~~y~v~l~~i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
.+|++. +.|+|++ ..+++|||.+.+.++++..+++
T Consensus 10 g~~~v~---~~InG~~--------~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRN--------VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEE--------EEEEEECCCCcEEcCHHHHHHc
Confidence 566555 6778874 3679999999999999988776
No 42
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=70.90 E-value=6.1 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=25.2
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSALK 375 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l~ 375 (484)
+.|+|+++ .+++|||++.+.++++.+..+-
T Consensus 5 ~~Ing~~i--------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 5 LLVNGKPL--------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEECCEEE--------EEEEcCCcceEEeCHHHHHHhC
Confidence 67888864 5699999999999999888763
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=68.86 E-value=4.8 Score=31.34 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=24.0
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
+.|+|++ ..++||||.+.+.+.++.++++
T Consensus 3 v~vng~~--------~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP--------VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE--------EEEEEcCCCCcEEECHHHHHHc
Confidence 5677764 3679999999999999888876
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.11 E-value=57 Score=29.23 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.4
Q ss_pred CcEEEcccccccccCHHHHHHHH
Q 011482 353 GGILIDSGTVITRLPPSIYSALK 375 (484)
Q Consensus 353 ~~~iiDSGTt~t~Lp~~~~~~l~ 375 (484)
-.++||||++......+..+.|.
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 46899999999999888887764
No 45
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=62.60 E-value=11 Score=28.63 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=24.5
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
+.|+|..+ .+++|||.+..+++.++.+.|
T Consensus 13 ~~I~g~~~--------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV--------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE--------EEEEeCCCcceecCHHHHHHh
Confidence 66777654 479999999999999998887
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=56.33 E-value=18 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=23.4
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
+.||+++ ..+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~--------~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQP--------VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEE--------EEEEEECCCCcEEcCHHHHHHc
Confidence 6677654 3679999999999999877665
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=49.11 E-value=19 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.8
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~--------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI--------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE--------EEEEECCCCeEEECHHHhhhc
Confidence 56777653 569999999999999888775
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.80 E-value=45 Score=28.45 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEEEEcCEEEEEEEEcCCCceeEecCCCCCC
Q 011482 134 NYIATIELGGRNMTVIVDTGSDLTWVQCQPCKSC 167 (484)
Q Consensus 134 ~Y~~~v~iGtq~~~vivDTGS~~~Wv~~~~C~~C 167 (484)
.+++++.|+.+++.+.+|||.-.+-+.-+-+..|
T Consensus 24 mLyI~~~ing~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 24 MLYINCKINGVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp --EEEEEETTEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred eEEEEEEECCEEEEEEEeCCCCccccCHHHHHHc
Confidence 3889999999999999999999888764422444
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=42.76 E-value=36 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=23.0
Q ss_pred EEEEEEEcCEEEEEEEEcCCCceeEecC
Q 011482 135 YIATIELGGRNMTVIVDTGSDLTWVQCQ 162 (484)
Q Consensus 135 Y~~~v~iGtq~~~vivDTGS~~~Wv~~~ 162 (484)
+.+++.+-+.++.++|||||...++...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 5666666669999999999999988754
No 50
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=30 Score=29.37 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.7
Q ss_pred CceEEchhhhcceEEEEECCCCEE
Q 011482 451 ETGIIGNYQQKNQRVIYDTKNSQL 474 (484)
Q Consensus 451 ~~~IlG~~fl~~~~vvfD~~~~~I 474 (484)
...+||-..|+....++|...+++
T Consensus 94 ~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 94 PEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred cccchhhhhhhhccEEEcCCcceE
Confidence 334999999999999999877665
No 51
>PF13134 DUF3948: Protein of unknown function (DUF3948)
Probab=29.87 E-value=35 Score=21.69 Aligned_cols=24 Identities=33% Similarity=0.181 Sum_probs=16.6
Q ss_pred cccccchhhHHHHHHHHHHHhhhh
Q 011482 2 VTKVKPLTILSLLLPLMVSLFLLA 25 (484)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (484)
|+||+++.......+|-.++..++
T Consensus 9 ~tK~D~lgsasga~~LTafI~fLa 32 (35)
T PF13134_consen 9 VTKMDFLGSASGAAVLTAFIVFLA 32 (35)
T ss_pred EechhhhhcccchHHHHHHHHHHH
Confidence 789999888877655555544443
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=28.29 E-value=47 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=19.1
Q ss_pred EEEEcC-EEEEEEEEcCCCceeEe
Q 011482 138 TIELGG-RNMTVIVDTGSDLTWVQ 160 (484)
Q Consensus 138 ~v~iGt-q~~~vivDTGS~~~Wv~ 160 (484)
++.|.. +.+.+.+|||++..-++
T Consensus 2 ~~~i~g~~~v~~~vDtGA~vnllp 25 (93)
T cd05481 2 DMKINGKQSVKFQLDTGATCNVLP 25 (93)
T ss_pred ceEeCCceeEEEEEecCCEEEecc
Confidence 456777 89999999999987765
No 53
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.16 E-value=1e+02 Score=26.51 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=24.3
Q ss_pred EEEEEEEcCEEEEEEEEcCCCceeEecC
Q 011482 135 YIATIELGGRNMTVIVDTGSDLTWVQCQ 162 (484)
Q Consensus 135 Y~~~v~iGtq~~~vivDTGS~~~Wv~~~ 162 (484)
-.+.+.|.+++..+++|+|+...+|..+
T Consensus 22 i~g~~~I~~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 22 ITGTFLINSIPASVLIDSGATHSFISSS 49 (135)
T ss_pred EEEEEEeccEEEEEEEecCCCcEEccHH
Confidence 5678888889999999999999988654
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=24.92 E-value=1.2e+02 Score=28.32 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.8
Q ss_pred ceEEEEEeEEEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 329 TFYILNLTGISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 329 ~~y~v~l~~i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
.+|.++ ..|||+.+ ..++|||.|.+.|+++..+.+
T Consensus 104 GHF~a~---~~VNGk~v--------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEAN---GRVNGKKV--------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEEE---EEECCEEE--------EEEEecCcceeecCHHHHHHh
Confidence 556555 78999875 469999999999999877665
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=24.07 E-value=81 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=23.1
Q ss_pred EEEcCEEeecCCCCCCcEEEcccccccccCHHHHHHH
Q 011482 338 ISIGGKQLQASGFAKGGILIDSGTVITRLPPSIYSAL 374 (484)
Q Consensus 338 i~vg~~~i~~~~~~~~~~iiDSGTt~t~Lp~~~~~~l 374 (484)
+.+||+.+ .++||||+..+.++....+++
T Consensus 29 ~~ing~~v--------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV--------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE--------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE--------EEEEeCCCCccccCHHHHHHc
Confidence 67888864 579999999999999998885
No 56
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=23.96 E-value=50 Score=28.58 Aligned_cols=20 Identities=40% Similarity=1.165 Sum_probs=17.5
Q ss_pred eEecCCC---CCCCCCCCCCCCC
Q 011482 158 WVQCQPC---KSCYNQQDPVFDP 177 (484)
Q Consensus 158 Wv~~~~C---~~C~~~~~~~ydp 177 (484)
||.|.|= .+|..++.|.||-
T Consensus 35 WVrC~PDsnsANCieEKGP~FdL 57 (150)
T PF04360_consen 35 WVRCNPDSNSANCIEEKGPLFDL 57 (150)
T ss_pred EEecCCCCCCCccccccCCceec
Confidence 9999875 7899999999984
No 57
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.81 E-value=80 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=16.7
Q ss_pred EEEEcCEEEEEEEEcCCCceeE
Q 011482 138 TIELGGRNMTVIVDTGSDLTWV 159 (484)
Q Consensus 138 ~v~iGtq~~~vivDTGS~~~Wv 159 (484)
++.+++..+.+++|||+...-+
T Consensus 2 ~~~~~~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKINGVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEECCEEEEEEEcCCCccccc
Confidence 4556668889999999886544
No 58
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=23.66 E-value=59 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccc
Q 011482 8 LTILSLLLPLMVSLFLLAKGAHCFE 32 (484)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (484)
||+..+|..++++.++-..|+.|++
T Consensus 1 MR~~lLf~aiLalsla~s~gavCee 25 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAVCEE 25 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhh
Confidence 6777667666666666677886653
No 59
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=23.65 E-value=55 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.0
Q ss_pred CcEEEcccccccccCHHHHHHHH
Q 011482 353 GGILIDSGTVITRLPPSIYSALK 375 (484)
Q Consensus 353 ~~~iiDSGTt~t~Lp~~~~~~l~ 375 (484)
-.+.+|||.+...+|...|..+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 36799999999999998888764
Done!