BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011483
         (484 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 297 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITT 356
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCT PGC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67

Query: 357 YEGKHNHDVPA 367
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78



 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 119 QPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVY 177
           Q   E    DDGY WRKYGQK VKG+  PRSYYKCT P C  +K VER + D +     Y
Sbjct: 9   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 68

Query: 178 KGSHNHPKP 186
           +G HNH  P
Sbjct: 69  EGKHNHDLP 77


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 294 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAV 353
           R+VV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C+ PGCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 354 ITTYEGKHNHDVP 366
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74



 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 128 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 186
           +DGY WRKYGQK VKGS  PRSYY+C+ P CP KK VER S D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74


>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
 pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
           Subunit Iii, A Highly Structured Truncated Zymogen E
          Length = 240

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query: 273 WKIEGESEGISAPGSRTVREPRVVVQTTSDIDILDD 308
           W++ G +  +SA G  T+++P V  + ++ ID +D+
Sbjct: 200 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE 235


>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
 pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
           PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
          Length = 455

 Score = 30.4 bits (67), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 291 REPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHP 335
           R+P VVV T++    L   Y  R+ G KV+  N  P  Y+   +P
Sbjct: 173 RKPFVVVDTSNGAGSLTLPYLLRELGCKVITVNAQPDGYFPARNP 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,406,015
Number of Sequences: 62578
Number of extensions: 497360
Number of successful extensions: 645
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 7
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)