Query 011483
Match_columns 484
No_of_seqs 354 out of 1246
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 5.8E-36 2E-40 245.8 5.5 76 293-368 1-76 (76)
2 1wj2_A Probable WRKY transcrip 100.0 8.8E-36 3E-40 245.7 4.1 75 293-367 4-78 (78)
3 2ayd_A WRKY transcription fact 100.0 8.2E-30 2.8E-34 209.4 4.1 65 123-187 10-75 (76)
4 1wj2_A Probable WRKY transcrip 100.0 1.1E-29 3.9E-34 209.4 4.2 65 123-187 13-78 (78)
5 2rpr_A Flywch-type zinc finger 76.6 1.5 5E-05 35.6 2.8 50 304-366 22-74 (87)
6 2rpr_A Flywch-type zinc finger 55.7 3.6 0.00012 33.3 1.0 50 125-186 22-74 (87)
7 1odh_A MGCM1; transcription fa 24.8 58 0.002 30.3 3.8 12 177-188 148-159 (174)
8 1cz6_A Protein (androctonin); 20.1 25 0.00085 23.1 0.3 8 328-335 16-23 (26)
9 1odh_A MGCM1; transcription fa 18.6 74 0.0025 29.6 3.2 38 329-369 122-160 (174)
10 3cm8_B Peptide from RNA-direct 17.8 32 0.0011 23.7 0.4 12 3-14 10-21 (30)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.8e-36 Score=245.79 Aligned_cols=76 Identities=67% Similarity=1.298 Sum_probs=73.4
Q ss_pred CceeeeccCCCccCCcCccccccCccccCCCCCCcccccccCCCCCCccchhhccCCCCeEEEEEeeccCCCCCCC
Q 011483 293 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAA 368 (484)
Q Consensus 293 prvvv~t~s~~~~~dDGY~WRKYGQK~IkG~~~PRsYYrCt~~gC~a~K~Ver~~~D~~~~~~tY~G~HnH~~p~~ 368 (484)
.||+|+|.+++++++|||+|||||||.|||+++||+|||||++||+|+|+|||+.+|+.+++|||+|+|||+.|++
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=8.8e-36 Score=245.74 Aligned_cols=75 Identities=79% Similarity=1.322 Sum_probs=69.8
Q ss_pred CceeeeccCCCccCCcCccccccCccccCCCCCCcccccccCCCCCCccchhhccCCCCeEEEEEeeccCCCCCC
Q 011483 293 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPA 367 (484)
Q Consensus 293 prvvv~t~s~~~~~dDGY~WRKYGQK~IkG~~~PRsYYrCt~~gC~a~K~Ver~~~D~~~~~~tY~G~HnH~~p~ 367 (484)
.+|+|+|.++++++||||+|||||||.|||+++||+|||||+++|+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=8.2e-30 Score=209.36 Aligned_cols=65 Identities=54% Similarity=1.009 Sum_probs=60.6
Q ss_pred ccccCCCCcccccccccccCCCCCCCCCcCCCCCCCCcccceeecc-CCceEEEEecCCCCCCCCC
Q 011483 123 ESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ 187 (484)
Q Consensus 123 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~HnH~~p~ 187 (484)
+....+|||+|||||||.|||+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4567899999999999999999999999999999999999999986 6789999999999999885
No 4
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.95 E-value=1.1e-29 Score=209.39 Aligned_cols=65 Identities=55% Similarity=0.997 Sum_probs=60.3
Q ss_pred ccccCCCCcccccccccccCCCCCCCCCcCCCCCCCCcccceeecc-CCceEEEEecCCCCCCCCC
Q 011483 123 ESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKPQ 187 (484)
Q Consensus 123 ~~~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~HnH~~p~ 187 (484)
+....+|||+|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus 13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 3457899999999999999999999999999999999999999975 7789999999999999873
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=76.64 E-value=1.5 Score=35.59 Aligned_cols=50 Identities=20% Similarity=0.455 Sum_probs=32.8
Q ss_pred ccCCcCccccccCccccCCCCCCcccccccC---CCCCCccchhhccCCCCeEEEEEeeccCCCCC
Q 011483 304 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTH---PGCPVRKHVERASHDLRAVITTYEGKHNHDVP 366 (484)
Q Consensus 304 ~~~dDGY~WRKYGQK~IkG~~~PRsYYrCt~---~gC~a~K~Ver~~~D~~~~~~tY~G~HnH~~p 366 (484)
-++-|||.-++--+ ...+.|.+|+. .+|.|+-.... ++ + ...+.|||+..
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 35668998886321 13468999986 48999864432 11 3 35789999754
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=55.71 E-value=3.6 Score=33.30 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=31.9
Q ss_pred ccCCCCcccccccccccCCCCCCCCCcCCCC---CCCCcccceeeccCCceEEEEecCCCCCCCC
Q 011483 125 KKSDDGYNWRKYGQKQVKGSENPRSYYKCTF---PSCPTKKKVERSLDGQITEIVYKGSHNHPKP 186 (484)
Q Consensus 125 ~~~~DGy~WRKYGQK~Ikgs~~pRsYYrCt~---~~C~akK~Ver~~dg~~~~i~Y~G~HnH~~p 186 (484)
...-|||.-++--+ ...+.|.+|+. .+|.|+=... .++ ++..+.|||++.
T Consensus 22 ~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~--~~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 22 FLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ--GHR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE--TTE----EEECSCCSSCCC
T ss_pred EEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc--CCC----EECCCCcCCCCc
Confidence 45678887765221 13468999975 4799974433 222 446789999753
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=24.77 E-value=58 Score=30.34 Aligned_cols=12 Identities=50% Similarity=1.204 Sum_probs=10.3
Q ss_pred ecCCCCCCCCCC
Q 011483 177 YKGSHNHPKPQS 188 (484)
Q Consensus 177 Y~G~HnH~~p~~ 188 (484)
-+|.|+||+|..
T Consensus 148 aKG~HDHpRPe~ 159 (174)
T 1odh_A 148 SKGEHDHPRPET 159 (174)
T ss_dssp EECCCCSCCCCC
T ss_pred cccccCCCCCCC
Confidence 369999999976
No 8
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=20.12 E-value=25 Score=23.07 Aligned_cols=8 Identities=63% Similarity=1.381 Sum_probs=6.6
Q ss_pred ccccccCC
Q 011483 328 SYYKCTHP 335 (484)
Q Consensus 328 sYYrCt~~ 335 (484)
.|||||+.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999974
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=18.61 E-value=74 Score=29.63 Aligned_cols=38 Identities=34% Similarity=0.639 Sum_probs=25.4
Q ss_pred ccccc-CCCCCCccchhhccCCCCeEEEEEeeccCCCCCCCC
Q 011483 329 YYKCT-HPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAAR 369 (484)
Q Consensus 329 YYrCt-~~gC~a~K~Ver~~~D~~~~~~tY~G~HnH~~p~~r 369 (484)
-+.|. +-|=||+ ++-| +|...+..--+|.|+|+.|.+.
T Consensus 122 ~~~Crgh~GyPVT-hFWr--h~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWR--HDGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp EECCCTBTTBCCE-EEEE--ECSSBEEEEEECCCCSCCCCCH
T ss_pred eEeccCcCCCcce-EEEE--EcCCEEEEecccccCCCCCCCc
Confidence 35554 3455664 4665 3555555678999999999875
No 10
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=17.82 E-value=32 Score=23.69 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=9.9
Q ss_pred cceecccccccc
Q 011483 3 VYIFFLISVIFC 14 (484)
Q Consensus 3 ~~~~~ldspv~~ 14 (484)
+||.||++|+--
T Consensus 10 p~f~FL~~~~~~ 21 (30)
T 3cm8_B 10 PTLLFLKVPAQN 21 (30)
T ss_pred ccEEEEcChhhh
Confidence 699999999743
Done!