Query 011484
Match_columns 484
No_of_seqs 249 out of 579
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 01:52:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154 Predicted nucleolar pr 100.0 4.3E-72 9.3E-77 577.7 27.2 354 2-439 137-492 (505)
2 KOG2038 CAATT-binding transcri 100.0 3.2E-49 7E-54 424.8 22.0 254 152-428 468-764 (988)
3 PF03914 CBF: CBF/Mak21 family 100.0 3.2E-40 6.9E-45 305.9 13.2 162 209-384 1-164 (164)
4 COG5593 Nucleic-acid-binding p 100.0 1.6E-31 3.4E-36 280.0 17.3 328 38-438 282-621 (821)
5 COG5117 NOC3 Protein involved 99.8 4.2E-20 9.1E-25 192.1 18.3 204 155-388 406-653 (657)
6 KOG2153 Protein involved in th 99.7 1.2E-16 2.7E-21 172.1 17.2 213 156-420 460-685 (704)
7 KOG2153 Protein involved in th 97.9 2.9E-05 6.3E-10 85.4 8.1 146 215-388 544-700 (704)
8 KOG1058 Vesicle coat complex C 68.1 48 0.001 38.8 11.2 99 209-310 333-434 (948)
9 PF14500 MMS19_N: Dos2-interac 47.1 2.9E+02 0.0062 28.0 11.9 111 193-304 41-156 (262)
10 PF08167 RIX1: rRNA processing 35.4 97 0.0021 29.0 6.0 79 228-306 65-148 (165)
11 PF10979 DUF2786: Protein of u 28.7 1.1E+02 0.0023 22.9 4.0 35 270-304 3-39 (43)
12 PF04499 SAPS: SIT4 phosphatas 24.0 4.7E+02 0.01 29.0 9.6 111 184-303 25-150 (475)
13 PF06465 DUF1087: Domain of Un 23.9 72 0.0016 26.2 2.5 39 362-402 23-61 (66)
14 PF01603 B56: Protein phosphat 23.7 2E+02 0.0044 30.9 6.7 63 248-310 106-171 (409)
15 PF01153 Glypican: Glypican; 23.4 4.9E+02 0.011 29.5 9.8 76 153-244 95-175 (557)
16 PF09068 EF-hand_2: EF hand; 23.1 1.1E+02 0.0023 27.9 3.8 52 169-220 60-125 (127)
17 PF12717 Cnd1: non-SMC mitotic 23.0 6.2E+02 0.013 23.6 12.5 118 163-281 32-159 (178)
18 PF08613 Cyclin: Cyclin; Inte 22.7 1.3E+02 0.0028 27.5 4.4 36 265-301 49-84 (149)
19 cd00183 TFIIS_I N-terminal dom 22.2 71 0.0015 26.2 2.3 22 367-388 48-69 (76)
No 1
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-72 Score=577.70 Aligned_cols=354 Identities=36% Similarity=0.577 Sum_probs=312.0
Q ss_pred CccCCchhHHHHHHHHhcCCchHHHHHHHHHhhccCCccccchHhHHHHHHhhccCCCCCCCCCCCCCCccccchhhHHH
Q 011484 2 EGSFIRPSIINYFIALFTLRSLSVLLQTFLLQSISSTLIYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIEL 81 (484)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (484)
+|.||+..|+.++.+|+.+ |+-+..|.+..-|+|.+|..+....+.+.++....+.| . +.
T Consensus 137 ~g~fp~~~f~~l~~~LisS---dv~it~f~e~~~~t~k~f~~~~~~~~~~~s~~~q~~~D-------------p----~v 196 (505)
T KOG2154|consen 137 NGGFPNSIFHRLLDALISS---DVDITIFLENVGYTDKYFKYFDITLTQVRSVVPQHPTD-------------P----PV 196 (505)
T ss_pred ccCCcHHHHHHHHHHHhcc---cccHHHHHHhccchhHHHHHHHHHHHHHHHhccCCCCC-------------C----ch
Confidence 5789999999999999999 77788888875589999999998888888877532222 1 34
Q ss_pred HHHHHHHHHHhCCC-CCCCcchhhhhcccccCCCCcccchHHhhhhhhccccCcchhhccCCcCcHHHHHHHHHHHHHHH
Q 011484 82 SLRKSYYILSKIPS-MEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNALSAAIISKKMKSKFTKA 160 (484)
Q Consensus 82 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a 160 (484)
+..|...+++.++. ...+ ....|..+ ..++.+...++.++.|+++
T Consensus 197 ~~~N~~~~ls~v~~p~~~~----S~~~~~~~------------------------------~~p~~~~~~~~~~k~f~~~ 242 (505)
T KOG2154|consen 197 IANNELEILSLVSLPLSVS----STSSYVLE------------------------------PIPKQTENEKQIRKSFQNM 242 (505)
T ss_pred hhcchHHHhhhccCCCCcc----cHhhhccc------------------------------cCccccccHHHHHHHHHHH
Confidence 56678888888874 3321 22223211 1233445567789999999
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHHHHhh-cccchHHHHHHHHHHHHHhcCCCcchHHHHHHHhh
Q 011484 161 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALL 239 (484)
Q Consensus 161 wL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d-~gg~isllAL~~LF~L~~~~Nld~prFY~~LY~LL 239 (484)
|+++++..+|..+++++|.+++++|+||+..|..+||||||+|| .||++||+||+|||+||++||++||.||.+||+||
T Consensus 243 Wls~l~~~ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~Ll 322 (505)
T KOG2154|consen 243 WLSSLNGELSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYALL 322 (505)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CcCccccchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCC
Q 011484 240 VPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETH 319 (484)
Q Consensus 240 dP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~ 319 (484)
+|++||.|||+|||+|+|.||+|+|||+++||||+|||+|+||.+||.+++.+|+||+||++|||+|+.|+|++...+.
T Consensus 323 ~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~~- 401 (505)
T KOG2154|consen 323 NPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALSL- 401 (505)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhcccccccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876421
Q ss_pred CCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhccCccccccccc
Q 011484 320 NDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEI 399 (484)
Q Consensus 320 ~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y 399 (484)
..||||+.+.||..++|++||||||.+||.||||+|+..|+.+.+++++ ++|
T Consensus 402 ------------------------~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k----~ef 453 (505)
T KOG2154|consen 402 ------------------------YDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYK----PEF 453 (505)
T ss_pred ------------------------CCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc----ccc
Confidence 3599999999999999999999999999999999999999999998875 689
Q ss_pred ccCcCCCCcHHHHHHHHHhcccCCCCcccccCCCCCCCCC
Q 011484 400 NVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSD 439 (484)
Q Consensus 400 ~~edflD~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~~ 439 (484)
+++|++|++|..++|+|++++.|..|-.+|+ -++++++.
T Consensus 454 ~~ed~ld~~y~~l~d~el~~kgk~~p~lefe-~~t~~~g~ 492 (505)
T KOG2154|consen 454 GLEDGLDSKYSVLQDGELSRKGKRFPPLEFE-RRTGLGGR 492 (505)
T ss_pred cCcchhhhhhHHhhcchhhcccCCCCCcccc-cccccCCc
Confidence 9999999999999999999999966666666 36888876
No 2
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=3.2e-49 Score=424.83 Aligned_cols=254 Identities=25% Similarity=0.367 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhccccChhhhhhHHHHHhhcccchHHHHHHHHHHHHHhcCC
Q 011484 152 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 226 (484)
Q Consensus 152 ~~k~~~~~awL~~L~~~l~-----~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d~gg~isllAL~~LF~L~~~~Nl 226 (484)
+..+++.+|.|+|+|||+| .+.+...+..|++ +.|.+| |+ +|||||++|||++....+
T Consensus 468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FN---------TsVQaLmLlfQvs~~~~~ 530 (988)
T KOG2038|consen 468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FN---------TSVQALMLLFQVSKKNDY 530 (988)
T ss_pred hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cc---------hhHHHHHHHHHHHHhhhh
Confidence 4588999999999999987 5789999999999 999999 99 999999999999999999
Q ss_pred CcchHHHHHHH-hhCcCccccchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 011484 227 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 305 (484)
Q Consensus 227 d~prFY~~LY~-LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~ 305 (484)
.++|||++||+ ||||+++.++++++|++||+++|+.|. ++.||+||||||+|+|++.+|+++||+|.++++|++..|.
T Consensus 531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~ 609 (988)
T KOG2038|consen 531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT 609 (988)
T ss_pred hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence 99999999999 999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCC--------Chh--------hHHHhH-----Hhhh---------hhc------cc-CCCCCCCCC
Q 011484 306 INCLLHREDGNETHND--------DSK--------AEKEIV-----DAAT---------VAN------IS-SIKPGIDHF 348 (484)
Q Consensus 306 l~~Ll~~~~~~~~~~~--------~~~--------~e~~d~-----de~~---------~~~------~~-~~~~~~d~Y 348 (484)
++.|+.+.+..+.+++ +++ +++..+ +++. ... .+ .+....++|
T Consensus 610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~~~~~~~~~Y 689 (988)
T KOG2038|consen 610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPIGARGAKTPY 689 (988)
T ss_pred HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhccccccccCCCCC
Confidence 9999876554332221 111 111100 0000 000 00 223456799
Q ss_pred CCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhccCcccccccccccCcCCCCcHHHHHHHHHhcccCCCCccc
Q 011484 349 DDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF 428 (484)
Q Consensus 349 dp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~~k~~p~~~ 428 (484)
||.+|||.+|||..||||||..|.+||||+|+.||+.+.+|..|+ |+++|+.|+|++.|||+++.|.+|++.-+.
T Consensus 690 D~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i~-----y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~ 764 (988)
T KOG2038|consen 690 DPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEIQ-----YGGPPLNDFTLMAFLDRFAYRNPKQVTKAR 764 (988)
T ss_pred CcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCceee-----cCCCchhHHHHHHHHHHHHhcCcccccccC
Confidence 999999999999999999999999999999999999999999986 999999999999999999999999887654
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=3.2e-40 Score=305.88 Aligned_cols=162 Identities=41% Similarity=0.702 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHhcCCCcchHHHHHHHhh-CcCccccchH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCh
Q 011484 209 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP 286 (484)
Q Consensus 209 isllAL~~LF~L~~~~Nld~prFY~~LY~LL-dP~l~~sk~r-a~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aPP 286 (484)
++|+||.++|+|++++|+|+++||++||++| +|..++++++ .+||++|+++|+++++|..|||||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5799999999999999999999999999966 9999998865 5599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHH
Q 011484 287 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW 366 (484)
Q Consensus 287 ~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLW 366 (484)
++++++|.+|++|+++||.|+.|+++++...+ .++.++++ .....++|+|+++||++|||..|+||
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~--~~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW 146 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD--SGSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW 146 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc--cchhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence 99999999999999999999999988775321 00011111 11245799999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 011484 367 EIDTLRHHYCPPVSRFVL 384 (484)
Q Consensus 367 EL~~L~~HYHPsVa~~A~ 384 (484)
||.+|++||||+|+++|+
T Consensus 147 EL~lL~~H~hP~V~~~A~ 164 (164)
T PF03914_consen 147 ELNLLRNHYHPSVRQFAR 164 (164)
T ss_pred HHHHHHHCCCcHHHHHhC
Confidence 999999999999999985
No 4
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-31 Score=280.04 Aligned_cols=328 Identities=20% Similarity=0.194 Sum_probs=242.2
Q ss_pred CccccchHhHHHHHHhhccCCCCCCCCCCCCCCccccchhhHHHHHHHHHHHHHhCC-CCCCCcchhhhhcccccCCCCc
Q 011484 38 TLIYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRASIELSLRKSYYILSKIP-SMEDNNEKSEHEMWSGSGSSSE 116 (484)
Q Consensus 38 d~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (484)
-.|||+++++...+-+-.+.+. -...++.+|.++..|. .+|+.. . + +
T Consensus 282 ~s~yyalitLnqt~l~~~e~~v-------------------an~lv~vyf~~f~kfl~n~~ke~--~--------~---~ 329 (821)
T COG5593 282 RSRYYALITLNQTELENREKAV-------------------ANKLVKVYFSIFRKFLENIPKEH--R--------V---N 329 (821)
T ss_pred ceeeeeehhhHHHHHhhhHHHH-------------------HHHHHHHHHHHHHHHHhcCchhh--c--------c---c
Confidence 4689999999887744332211 1355667777777666 333211 0 0 1
Q ss_pred ccchHHhhhh----hhccccCcchhhccCCcCcHHHHHHHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhc
Q 011484 117 EGNLKEASKK----SKTKVKMPKAEKSNNNALSAAIISKKMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIP 187 (484)
Q Consensus 117 ~~~~~~~~k~----~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~awL~~L~~~l~-----~~l~k~vL~~L~k~i~p 187 (484)
...++++.++ +|..++-.+-|+ --.+...+..+++.++.|+++||+.| ...++.++.+|++ +.
T Consensus 330 s~~leek~~~~~~Knk~s~K~~k~e~------~rkev~~eknS~~~savLtG~nRa~pfa~l~~~~~~~Hm~tlfk--it 401 (821)
T COG5593 330 SNILEEKLVIGLGKNKGSEKICKTEI------IRKEVHTEKNSFYGSAVLTGCNRAGPFALLFRNAVKSHMMTLFK--IT 401 (821)
T ss_pred chhHHHHHHhhhccCCCCcccccHHH------HHHHHHHhhhhHHHHHHHhcccccCchhhhhHHHHHHHHHHHHh--hh
Confidence 1233444333 232222222221 11122344578899999999999865 6788999999999 99
Q ss_pred cccChhhhhhHHHHHhhcccchHHHHHHHHHHHHHhcCCCcchHHHHHHH-hhCcCccccchHHHHHHHHHHHhcCCCCh
Q 011484 188 FLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLP 266 (484)
Q Consensus 188 Hl~NP~lL~DFLtds~d~gg~isllAL~~LF~L~~~~Nld~prFY~~LY~-LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp 266 (484)
|-.+ |+ +++|||++++|..-+.-++++|||+.||. |+||.+..+++++.+++|++++|+.+. +
T Consensus 402 h~~~------fn---------ts~qalmli~q~~~~~~l~SdryY~~lYesl~dprls~ssKqgiylnllykSL~vd~-n 465 (821)
T COG5593 402 HEFL------FN---------TSEQALMLIDQEFYRFLLDSDRYYTPLYESLIDPRLSESSKQGIYLNLLYKSLRVDT-N 465 (821)
T ss_pred hhhh------hh---------HHHHHHHHHHHHHHHHhhccchhhhhHHHHHhhhhhhcccccchhHHHHHHHHHHhc-C
Confidence 9988 88 99999999999999999999999999999 899999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCC
Q 011484 267 AYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGI 345 (484)
Q Consensus 267 ~~rVAAFIKRLlrlaL~-aPP~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~ 345 (484)
+.||-||+||++|+|-. +.++++-+....+.+|-+.-|.++.|+.+.+-+=+. .+|.+++.+| +....
T Consensus 466 V~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~~~lk~l~tn~~vd~e~--e~d~~eeq~d---------kd~kr 534 (821)
T COG5593 466 VHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMACGDLKNLLTNTPVDYEY--ESDAEEEQGD---------KDIKR 534 (821)
T ss_pred chHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHhHHHHHHhcCCCccccc--ccchhhhhcc---------cchhh
Confidence 89999999999999765 568888888899999999999999999876542111 1111111100 11123
Q ss_pred CCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhccCcccccccccccCcCCCCcHHHHHHHHHhcccCCCC
Q 011484 346 DHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVP 425 (484)
Q Consensus 346 d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~~k~~p 425 (484)
..||.++|||.++||..|||||+..+.+||||+|..+|+.+..|..+-. + -|+-=||+..|||+++.|..|+-.
T Consensus 535 keydgrkrdpk~anae~s~lwei~~finhfhptv~~~a~a~v~ge~~i~-k-----p~l~l~tl~hfldrf~yr~~kqt~ 608 (821)
T COG5593 535 KEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYANAYVTGEEQIA-K-----PDLGLFTLSHFLDRFVYRSAKQTN 608 (821)
T ss_pred hhccCcccCcccccccccchhhhhhhhhhcccHHHHHHHHhhhhhhhhc-C-----CCcchhhHHHHHHHHHhcCccccc
Confidence 4699999999999999999999999999999999999999999886422 1 234447999999999999998876
Q ss_pred cccccCCCCCCCC
Q 011484 426 LAFYKTTPTSLFS 438 (484)
Q Consensus 426 ~~~~~~~p~~lf~ 438 (484)
.+--..|=.-||+
T Consensus 609 ~arg~simqpl~~ 621 (821)
T COG5593 609 TARGTSIMQPLFS 621 (821)
T ss_pred ccccchhhhhhhc
Confidence 6644333333443
No 5
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.84 E-value=4.2e-20 Score=192.06 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=172.3
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHHHHhhc---------c---cchHHHHHHHHHHHHH
Q 011484 155 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------G---GVVSVMALSSLFILMT 222 (484)
Q Consensus 155 ~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d~---------g---g~isllAL~~LF~L~~ 222 (484)
+..+..||.+|+ .--.++++.||+||.| +.|+.||++|+|||..+|.. | ..-+++|+...|.|++
T Consensus 406 kiif~~Yf~vLk-~~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 406 KIIFRLYFMVLK-GDRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 345556666666 2346799999999999 99999999999999998853 2 1357889999998886
Q ss_pred h-----cCCCcchHHHHHHHhhCc-----Cccc---------------------cchHHHHHHHHHH-HhcCCCChHHHH
Q 011484 223 Q-----HGLEYPNFYEKLYALLVP-----SIFM---------------------AKHRAKFFELLDS-CLRSPLLPAYLA 270 (484)
Q Consensus 223 ~-----~Nld~prFY~~LY~LLdP-----~l~~---------------------sk~ra~Fl~LL~~-~Lks~~Lp~~rV 270 (484)
. .|+|.+-|-..||+++.| ++-- +....+++..++. |.++......|.
T Consensus 483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~ 562 (657)
T COG5117 483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH 562 (657)
T ss_pred hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence 4 689999999999997644 2210 1234677777755 678988788899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCC
Q 011484 271 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD 350 (484)
Q Consensus 271 AAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp 350 (484)
.+|-|||+-.|.+.|..+..+++.++..|+.|+|.|..+..++.+ .|.|.|+|
T Consensus 563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~ 615 (657)
T COG5117 563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS 615 (657)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence 999999999999999999999999999999999999999988765 36799999
Q ss_pred CCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhc
Q 011484 351 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEN 388 (484)
Q Consensus 351 ~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~A~~l~~ 388 (484)
...||..+|.....|||-.+|.+||+|.|.+-|+.++.
T Consensus 616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~ 653 (657)
T COG5117 616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLK 653 (657)
T ss_pred CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHh
Confidence 99999999999999999999999999999999999875
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.2e-16 Score=172.08 Aligned_cols=213 Identities=18% Similarity=0.201 Sum_probs=165.2
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHHHHhhc------ccchHHHHHHHHHHHHHh----cC
Q 011484 156 KFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----HG 225 (484)
Q Consensus 156 ~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d~------gg~isllAL~~LF~L~~~----~N 225 (484)
..+..|+.+|+...-. ++..+|+||++ +.|++|++++.|++...-++ +..-+++|++++|.|++. .|
T Consensus 460 iVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~ln 536 (704)
T KOG2153|consen 460 IVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLN 536 (704)
T ss_pred HHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeec
Confidence 4445888888866655 99999999999 99999999999998655432 345789999999999976 58
Q ss_pred CCcchHHHHHHHhhCcCccccc--hHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 011484 226 LEYPNFYEKLYALLVPSIFMAK--HRAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRR 302 (484)
Q Consensus 226 ld~prFY~~LY~LLdP~l~~sk--~ra~Fl~LL~~~L-ks~~Lp~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkr 302 (484)
+|+..||..||+++-|=-.... --.+.+++++..+ ++.. |..+|.+|++||+..+++.-+.... .+...+..
T Consensus 537 iD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~ 611 (704)
T KOG2153|consen 537 IDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIE 611 (704)
T ss_pred cCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHH
Confidence 8999999999998766333322 2358899999875 5565 8888999999999999998776555 44555566
Q ss_pred CccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHH
Q 011484 303 HPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF 382 (484)
Q Consensus 303 hP~l~~Ll~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HYHPsVa~~ 382 (484)
.+.|..|+.++ -|++|++....|||+.+++ |||.|+.+
T Consensus 612 fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~~~ 649 (704)
T KOG2153|consen 612 FSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISRLM 649 (704)
T ss_pred hhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHHHH
Confidence 66665555431 1999999999999999999 99999999
Q ss_pred HHHhhccCcccccccccccCcCCCCcHHHHHHHHHhcc
Q 011484 383 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRR 420 (484)
Q Consensus 383 A~~l~~~~~i~~k~~~y~~edflD~sy~~lld~e~~k~ 420 (484)
|..+.-|.+.- +..-.--++...|-+.+|+..+-+.
T Consensus 650 a~~~~~G~~~~--~~~a~~p~~s~~sa~~L~~~~~~~~ 685 (704)
T KOG2153|consen 650 ASEIAIGVGAT--GEGALPPELSNLSAAELFEQDLLEM 685 (704)
T ss_pred HHHHhhcCCcc--CcCCCCccccCchHHHHhhhHHHHh
Confidence 99998888752 1122223456678889999977665
No 7
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=2.9e-05 Score=85.36 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCCC--cchHHHHHHHhhCcCcccc--------chHHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhcc
Q 011484 215 SSLFILMTQHGLE--YPNFYEKLYALLVPSIFMA--------KHRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL 283 (484)
Q Consensus 215 ~~LF~L~~~~Nld--~prFY~~LY~LLdP~l~~s--------k~ra~Fl~LL-~~~Lks~~Lp~~rVAAFIKRLlrlaL~ 283 (484)
.++|.+|-..+++ -+.||.- -+++||.+... ..+-+++.+. ..+-.+.....+|..+|-||+.-++.+
T Consensus 544 ~~lY~~l~~~~~~~~~~~~~~i-lr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~ 622 (704)
T KOG2153|consen 544 DHLYKMLFPMNLGPDDDGFAII-LRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE 622 (704)
T ss_pred HHHHHHhcccccCCCcchHHHH-HHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence 3455555444444 3345543 34556543221 1223333332 344567778999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCChhhHHHhHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 011484 284 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS 363 (484)
Q Consensus 284 aPP~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~e~~d~de~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~S 363 (484)
.|.....+.++|+-.+|-|++.+-.++..+.. .|.+.|.+...+|+.+|...+
T Consensus 623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~ 675 (704)
T KOG2153|consen 623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA 675 (704)
T ss_pred CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence 99999999999999999998877777765543 377899999999999999999
Q ss_pred cHHHHHHHhhccChHHHHHHHHhhc
Q 011484 364 SLWEIDTLRHHYCPPVSRFVLSLEN 388 (484)
Q Consensus 364 sLWEL~~L~~HYHPsVa~~A~~l~~ 388 (484)
.|||-.++..||+|+|..-++.+..
T Consensus 676 ~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 676 ELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred HHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999887776643
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.07 E-value=48 Score=38.77 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhcCCC-cchHHHHHHH-hhCc-CccccchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCC
Q 011484 209 VSVMALSSLFILMTQHGLE-YPNFYEKLYA-LLVP-SIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVP 285 (484)
Q Consensus 209 isllAL~~LF~L~~~~Nld-~prFY~~LY~-LLdP-~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrlaL~aP 285 (484)
+.=-||...+.|++.||++ --.|..+=.. --+- .--.-+||..+.+-+..|-.. .|. ..|.-|-=|+-----..
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~--Fp~-~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK--FPE-VAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc--ChH-HHHHHHHHHHHHhccCC
Confidence 5556777888888777763 2333333222 1111 112235666666655554221 121 12233333333333456
Q ss_pred hhHHHHHHHHHHHHHHhCccccccc
Q 011484 286 PSGALVIMALIHNLLRRHPSINCLL 310 (484)
Q Consensus 286 P~~~~~iL~lI~nLLkrhP~l~~Ll 310 (484)
+.++.++|.||++.+.+.|+++..|
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHH
Confidence 8889999999999999999887764
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=47.12 E-value=2.9e+02 Score=28.04 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=78.3
Q ss_pred hhhhhHHHHHhhcccchHHHHHHHHHHHHHhcCCCcc---hHHHHHHHhhCcCccccchHHHHHHHHHHHhcCCCCh-HH
Q 011484 193 IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP---NFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLP-AY 268 (484)
Q Consensus 193 ~lL~DFLtds~d~gg~isllAL~~LF~L~~~~Nld~p---rFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp-~~ 268 (484)
..|.+|+.+.++-.. ....||.|+..|+...+.... ..-+.++.-.++.....+.|-..++++...+..-.-. ..
T Consensus 41 ~~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~ 119 (262)
T PF14500_consen 41 QVLLDFFCSRLDDHA-CVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS 119 (262)
T ss_pred HHHHHHHHHHhccHh-hHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 456668887764222 334558888888866666444 4556666666777777888999999998888652201 12
Q ss_pred HHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhCc
Q 011484 269 LAAAFVKKLSRLSILV-PPSGALVIMALIHNLLRRHP 304 (484)
Q Consensus 269 rVAAFIKRLlrlaL~a-PP~~~~~iL~lI~nLLkrhP 304 (484)
.-..|++.+++++=.- .|-..+.+.-++..+++..+
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 2458999999987664 68888888889998888888
No 10
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.40 E-value=97 Score=28.96 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=40.5
Q ss_pred cchHHHHHHHhhCcCccccchHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCC--hhHHHHHHHHHHHHHHh
Q 011484 228 YPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSP---LLPAYLAAAFVKKLSRLSILVP--PSGALVIMALIHNLLRR 302 (484)
Q Consensus 228 ~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~---~Lp~~rVAAFIKRLlrlaL~aP--P~~~~~iL~lI~nLLkr 302 (484)
+..+.+.|++.|...--..-...-..-|-+.|-... .+.-..+.-.+.++.+.++... +.....++..+..++++
T Consensus 65 ~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 65 GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 466778888877442111111222222222222211 1111223334444444444332 47777889999999999
Q ss_pred Cccc
Q 011484 303 HPSI 306 (484)
Q Consensus 303 hP~l 306 (484)
||..
T Consensus 145 ~ptt 148 (165)
T PF08167_consen 145 HPTT 148 (165)
T ss_pred CCcc
Confidence 9965
No 11
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=28.66 E-value=1.1e+02 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhCc
Q 011484 270 AAAFVKKLSRLSIL--VPPSGALVIMALIHNLLRRHP 304 (484)
Q Consensus 270 VAAFIKRLlrlaL~--aPP~~~~~iL~lI~nLLkrhP 304 (484)
+..=|++|+.++-. .+|+-+-.++.-...|+.+|-
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44558899999987 778889999999999999884
No 12
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=24.02 E-value=4.7e+02 Score=29.01 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=63.9
Q ss_pred hhhccccChhhhhhHHHHHhhcccchHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCccccch--HHHHHHHHHHHhc
Q 011484 184 AVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKH--RAKFFELLDSCLR 261 (484)
Q Consensus 184 ~i~pHl~NP~lL~DFLtds~d~gg~isllAL~~LF~L~~~~Nld~prFY~~LY~LLdP~l~~sk~--ra~Fl~LL~~~Lk 261 (484)
.++-|+.+| .+||||-....... ...=.++.+.+.. .++-.+|.++|+|..-...+ -+.||.-+-+.-.
T Consensus 25 ~llkHI~~~-~ImDlLLklIs~d~---~~~~~~ilewL~~-----q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 25 NLLKHIDTP-AIMDLLLKLISTDK---PESPTGILEWLAE-----QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHhcCCc-HHHHHHHHHHccCc---ccchHHHHHHHHH-----hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 334488765 47899865554321 0111134444433 56778888888876544322 2455553322222
Q ss_pred CCC-------ChHHH-----HHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhC
Q 011484 262 SPL-------LPAYL-----AAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRH 303 (484)
Q Consensus 262 s~~-------Lp~~r-----VAAFIKRLlrlaL~-aPP~~~~~iL~lI~nLLkrh 303 (484)
... -|..+ -..+|.+|+..+|. ..-+.++.++.++-+|+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 111 12222 24689999999995 34677778888899999665
No 13
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=23.92 E-value=72 Score=26.18 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=30.1
Q ss_pred cccHHHHHHHhhccChHHHHHHHHhhccCcccccccccccC
Q 011484 362 RSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVK 402 (484)
Q Consensus 362 ~SsLWEL~~L~~HYHPsVa~~A~~l~~~~~i~~k~~~y~~e 402 (484)
....||- +|++||+-.-...++.|..|..++ |...|.-+
T Consensus 23 ~~~yWe~-LLr~~ye~~q~e~~~~LGKGKR~R-KqV~y~~~ 61 (66)
T PF06465_consen 23 DPNYWEK-LLRHRYEQQQEEEEKALGKGKRSR-KQVNYAEE 61 (66)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHhccccccc-cccccccc
Confidence 3578995 679999999999999999998876 34455433
No 14
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=23.66 E-value=2e+02 Score=30.94 Aligned_cols=63 Identities=22% Similarity=0.432 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccc
Q 011484 248 HRAKFFELLDSCLRSPLLPA---YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLL 310 (484)
Q Consensus 248 ~ra~Fl~LL~~~Lks~~Lp~---~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~l~~Ll 310 (484)
|-.....++.+++.+..... +.-..|++||+.+.-.-.|.---.+..+++++..++++++..|
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I 171 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI 171 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44566777778887755444 6778999999999888888877778888888888888777655
No 15
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=23.42 E-value=4.9e+02 Score=29.45 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc--cChhhhhhHHHHHhh--cccchHHH-HHHHHHHHHHhcCCC
Q 011484 153 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSYD--IGGVVSVM-ALSSLFILMTQHGLE 227 (484)
Q Consensus 153 ~k~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl--~NP~lL~DFLtds~d--~gg~isll-AL~~LF~L~~~~Nld 227 (484)
.-++|++.+...|+ .-+..|..|+.++.+.+ .|-.++.||+++.-+ .|+.+.|. +++-.|
T Consensus 95 ~~~~F~~~f~~ll~------~se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff--------- 159 (557)
T PF01153_consen 95 RARKFDEFFRELLR------QSENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFF--------- 159 (557)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH---------
Confidence 34456666666665 33456666666666665 466788888887543 56666553 222222
Q ss_pred cchHHHHHHHhhCcCcc
Q 011484 228 YPNFYEKLYALLVPSIF 244 (484)
Q Consensus 228 ~prFY~~LY~LLdP~l~ 244 (484)
++.|.++|.+++|..-
T Consensus 160 -~~Lf~~~f~llnp~~~ 175 (557)
T PF01153_consen 160 -DRLFPRVFRLLNPQYQ 175 (557)
T ss_dssp -HHHHHHHHHHHTTTSB
T ss_pred -HHHHHHHHHHhccCcC
Confidence 3445555667777663
No 16
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=23.13 E-value=1.1e+02 Score=27.88 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=31.6
Q ss_pred CChhhHHHHHHHhhhhh---hccccC---------hhhhhhHHHHHhhcc--cchHHHHHHHHHHH
Q 011484 169 LPVDIYKEVLVTLHRAV---IPFLSN---------PIMLCDFLTRSYDIG--GVVSVMALSSLFIL 220 (484)
Q Consensus 169 l~~~l~k~vL~~L~k~i---~pHl~N---------P~lL~DFLtds~d~g--g~isllAL~~LF~L 220 (484)
++...+..+|..++.++ .|++.+ .+++..||...||.+ |.++++++...+.+
T Consensus 60 l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 60 LSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 45555566666555111 466554 357888999999975 67888877665544
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.97 E-value=6.2e+02 Score=23.57 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=73.4
Q ss_pred HhccCCCChhhHHHHHHHhhhhhhcccc--ChhhhhhHHHHHhhcccchHHHHHHHHHHHHHh--cCCCcchHHHHHHHh
Q 011484 163 TFLRLPLPVDIYKEVLVTLHRAVIPFLS--NPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQ--HGLEYPNFYEKLYAL 238 (484)
Q Consensus 163 ~~L~~~l~~~l~k~vL~~L~k~i~pHl~--NP~lL~DFLtds~d~gg~isllAL~~LF~L~~~--~Nld~prFY~~LY~L 238 (484)
..|+ .-.+.+.+.+|..|.+-|.-.+. ++.++..|+.-.-|....++-.|...+.++..+ -|..+..|..-++.+
T Consensus 32 ~~L~-D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 32 KCLR-DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3344 34577888888888886665554 445667788767677767888888888888877 344455555555554
Q ss_pred hCcCc------cccchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 011484 239 LVPSI------FMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLS 281 (484)
Q Consensus 239 LdP~l------~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIKRLlrla 281 (484)
-.+.- .+...+..+++.+..+++.+......+.-.+.|++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 111 NNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred hCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 43321 23344556666666666644435556666666665554
No 18
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=22.65 E-value=1.3e+02 Score=27.53 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 011484 265 LPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLR 301 (484)
Q Consensus 265 Lp~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLk 301 (484)
+|.--+..|++|+.+-+ ++++...+.++..+..|.+
T Consensus 49 ~p~i~i~~fl~ri~~~~-~~s~~~~i~aliYl~Rl~~ 84 (149)
T PF08613_consen 49 VPSISIRDFLSRILKYT-QCSPECLILALIYLDRLRQ 84 (149)
T ss_dssp --SS-HHHHHHHHHHHT-T--HHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 46667999999999888 4566667777788888888
No 19
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=22.20 E-value=71 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHhhccChHHHHHHHHhhc
Q 011484 367 EIDTLRHHYCPPVSRFVLSLEN 388 (484)
Q Consensus 367 EL~~L~~HYHPsVa~~A~~l~~ 388 (484)
-+..|++|..|.|+.+|+.+..
T Consensus 48 ~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 48 KVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH
Confidence 3778999999999999998865
Done!