Query 011484
Match_columns 484
No_of_seqs 249 out of 579
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 21.7 2.6E+02 0.009 28.3 8.3 139 160-304 122-289 (339)
2 2pmi_B PHO85 cyclin PHO80, ami 18.7 93 0.0032 31.0 4.2 43 263-306 70-112 (293)
3 3hts_B Heat shock transcriptio 16.8 1.6E+02 0.0053 24.7 4.6 47 227-278 11-71 (102)
4 4gof_A Small glutamine-rich te 15.6 71 0.0024 23.9 1.9 27 194-220 8-43 (52)
5 1w9c_A CRM1 protein, exportin 14.3 8.7E+02 0.03 24.2 10.1 55 208-262 182-249 (321)
6 1zoq_C CREB-binding protein, i 14.0 2.1E+02 0.0073 20.9 3.9 33 161-200 6-38 (47)
7 2ldu_A Heat shock factor prote 12.6 3.4E+02 0.012 23.3 5.7 49 225-278 14-76 (125)
8 3si5_X Protein CASC5; BUBR1-bl 11.2 79 0.0027 20.0 0.8 8 271-278 14-21 (24)
9 3grl_A General vesicular trans 11.1 9.4E+02 0.032 26.4 9.8 139 156-304 60-244 (651)
10 1ug3_A EIF4GI, eukaryotic prot 9.6 1.2E+03 0.04 22.7 10.0 25 214-238 87-111 (339)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.68 E-value=2.6e+02 Score=28.27 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHHH-----Hhhc----ccchHHHHHHHHHHHHHh---c-CC
Q 011484 160 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL 226 (484)
Q Consensus 160 awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtd-----s~d~----gg~isllAL~~LF~L~~~---~-Nl 226 (484)
.|+..|. .-..+-.+.+|-.|.+. | -.++++.-.|... ..++ .|.+--.+|..+-+||.. . ++
T Consensus 122 ~iiekL~-~~~~~~lr~aLfsLk~~-~--q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 122 AILEKLY-SSSGPELRRSLFSLKQI-F--QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHH-HCCHHHHHHHHHHHHHH-H--HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHHH-h--hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 3444444 23455677777777751 1 1465555555531 1111 133444566666666642 1 22
Q ss_pred C-cchHHHHHHHhhCcCccccchHHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhc---cCChhHHH
Q 011484 227 E-YPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGAL 290 (484)
Q Consensus 227 d-~prFY~~LY~LLdP~l~~sk~ra~Fl~LL~~~Lks~~Lp~~rVAAFIK------------RLlrlaL---~aPP~~~~ 290 (484)
. .+.|-++||+++++..-.. -..=+.||..+...+.-....|..=|+ +|..+-- .+.+...+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V--~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLV--VKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHH--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHH--HHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 2 6899999999998421111 122356666665443223334433333 3333332 34566667
Q ss_pred HHHHHHHHHHHhCc
Q 011484 291 VIMALIHNLLRRHP 304 (484)
Q Consensus 291 ~iL~lI~nLLkrhP 304 (484)
-++.+|..+|..-|
T Consensus 276 ~amtLIN~lL~~ap 289 (339)
T 3dad_A 276 YTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 77888888877654
No 2
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=18.69 E-value=93 Score=30.96 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 011484 263 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 306 (484)
Q Consensus 263 ~~Lp~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~l 306 (484)
...|.--+..|++||.+-|-. ++...+.+|..|..|..++|..
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~l-s~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSSL-EHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhhCCCC
Confidence 335666789999999998764 5666777778888999888854
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=16.76 E-value=1.6e+02 Score=24.75 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=28.4
Q ss_pred CcchHHHHHHHhh-CcCc---c---------ccchHHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 011484 227 EYPNFYEKLYALL-VPSI---F---------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 278 (484)
Q Consensus 227 d~prFY~~LY~LL-dP~l---~---------~sk~ra~Fl~-LL~~~Lks~~Lp~~rVAAFIKRLl 278 (484)
..|.|..+||.|| ||.. . .......|-+ +|-++.+... .++|+..|-
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~n-----fsSFvRQLN 71 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN-----FASFVRQLN 71 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCC-----HHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCc-----HHHHHHHhh
Confidence 4678999999988 4532 1 1123455654 5555555444 677776653
No 4
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=15.57 E-value=71 Score=23.89 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred hhhhHHHHHhhccc---------chHHHHHHHHHHH
Q 011484 194 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 220 (484)
Q Consensus 194 lL~DFLtds~d~gg---------~isllAL~~LF~L 220 (484)
.+.|||..+.+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 35678888877653 3789999988865
No 5
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=14.31 E-value=8.7e+02 Score=24.17 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHhcCC---CcchHHHHHHH-hh--------CcCc-cccchHHHHHHHHHHHhcC
Q 011484 208 VVSVMALSSLFILMTQHGL---EYPNFYEKLYA-LL--------VPSI-FMAKHRAKFFELLDSCLRS 262 (484)
Q Consensus 208 ~isllAL~~LF~L~~~~Nl---d~prFY~~LY~-LL--------dP~l-~~sk~ra~Fl~LL~~~Lks 262 (484)
.++-.+|..+.+++....- ....||+.-|- +| |+.- ..=+.++++|+-+.....+
T Consensus 182 ~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 182 NVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 4788889999888866431 23467766665 22 2211 1114556666666555544
No 6
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=13.98 E-value=2.1e+02 Score=20.87 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=27.5
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHH
Q 011484 161 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 200 (484)
Q Consensus 161 wL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLt 200 (484)
.+.-||.+-++.+-..||.+|.. ||.+++-|+.
T Consensus 6 Ll~tlksp~sp~qqqqvl~ILks-------nPqLMAAfIk 38 (47)
T 1zoq_C 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 56678888888888899998876 9999998874
No 7
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=12.63 E-value=3.4e+02 Score=23.26 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=30.3
Q ss_pred CCCcchHHHHHHHhh-CcCcc------------ccchHHHHHH-HHHHHhcCCCChHHHHHHHHHHHH
Q 011484 225 GLEYPNFYEKLYALL-VPSIF------------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKLS 278 (484)
Q Consensus 225 Nld~prFY~~LY~LL-dP~l~------------~sk~ra~Fl~-LL~~~Lks~~Lp~~rVAAFIKRLl 278 (484)
....+.|..+||.+| ||+.- .......|-+ +|-++.+... .++|+..|-
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~n-----fsSFvRQLN 76 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN-----MASFVRQLN 76 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCC-----HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCc-----HHHHHHHhc
Confidence 345789999999977 55421 1224455654 5556666554 667776553
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=11.22 E-value=79 Score=20.00 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q 011484 271 AAFVKKLS 278 (484)
Q Consensus 271 AAFIKRLl 278 (484)
--|||||-
T Consensus 14 ndFIKRLK 21 (24)
T 3si5_X 14 NDFIKRLK 21 (26)
T ss_pred HHHHHHHh
Confidence 35888873
No 9
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=11.05 E-value=9.4e+02 Score=26.37 Aligned_cols=139 Identities=20% Similarity=0.150 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCC-CChhhHHHHHHHhhhhhhccccC----------hhhhhhHHHHHhhcccchHHHHHHHHHHHHHhc
Q 011484 156 KFTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSN----------PIMLCDFLTRSYDIGGVVSVMALSSLFILMTQH 224 (484)
Q Consensus 156 ~~~~awL~~L~~~-l~~~l~k~vL~~L~k~i~pHl~N----------P~lL~DFLtds~d~gg~isllAL~~LF~L~~~~ 224 (484)
.-....+..|++. -..++.+.+|++|.-- +.--.+ +.-++.+++|.+=.. --.+..|+.++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l-~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL--- 131 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNI-ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL--- 131 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHH-HCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT---
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHH-hCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh---
Confidence 3355777888765 5789999999999752 221111 122344555444110 01223334443
Q ss_pred CCCcchHHHHHHH--hhCc------C-----cccc------------chHHHHHH---HHHHHhcCCCChHHHHHHH---
Q 011484 225 GLEYPNFYEKLYA--LLVP------S-----IFMA------------KHRAKFFE---LLDSCLRSPLLPAYLAAAF--- 273 (484)
Q Consensus 225 Nld~prFY~~LY~--LLdP------~-----l~~s------------k~ra~Fl~---LL~~~Lks~~Lp~~rVAAF--- 273 (484)
+.++||.++|+ +|.- . ++.+ ..|..+-+ ++-..|..++-..+-+.||
T Consensus 132 --~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEna 209 (651)
T 3grl_A 132 --EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENA 209 (651)
T ss_dssp --TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred --cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 56889999998 4421 1 1100 01111111 2233455566578889999
Q ss_pred HHHHHHHhccCCh--hHH--HHHHHHHHHHHHhCc
Q 011484 274 VKKLSRLSILVPP--SGA--LVIMALIHNLLRRHP 304 (484)
Q Consensus 274 IKRLlrlaL~aPP--~~~--~~iL~lI~nLLkrhP 304 (484)
.-||..+--.-.. +++ --||.++.||++-+|
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 8999988765443 223 368999999998875
No 10
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=9.64 E-value=1.2e+03 Score=22.65 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHh
Q 011484 214 LSSLFILMTQHGLEYPNFYEKLYAL 238 (484)
Q Consensus 214 L~~LF~L~~~~Nld~prFY~~LY~L 238 (484)
+.-++..+....+|-|+-|..|-.+
T Consensus 87 f~~~~~~l~Dl~lDiP~a~~~La~~ 111 (339)
T 1ug3_A 87 LYEILELAEDMEIDIPHVWLYLAEL 111 (339)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHhhChHhhcCccchHHHHHHH
Confidence 3333344444555555555555443
Done!