Query 011484
Match_columns 484
No_of_seqs 249 out of 579
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011484.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011484hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zoqc1 a.153.1.1 (C:2065-2111 25.8 38 0.0028 22.8 3.9 34 160-200 5-38 (47)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 25.3 4.5 0.00033 25.6 -0.9 8 372-379 24-31 (32)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 17.0 64 0.0047 26.2 4.4 36 186-221 81-122 (125)
4 d2jaka1 a.118.1.20 (A:30-372) 16.6 2.5E+02 0.018 25.8 9.3 65 248-312 104-173 (343)
5 d2htsa_ a.4.5.22 (A:) Heat-sho 9.8 1.6E+02 0.012 22.0 4.6 14 229-242 3-17 (92)
6 d1w53a_ a.186.1.2 (A:) Phospho 8.9 2.3E+02 0.017 21.2 5.0 72 153-226 7-82 (84)
7 d1eo0a_ a.48.3.1 (A:) Transcri 8.6 56 0.0041 24.3 1.2 21 368-388 50-70 (77)
8 d1gxha_ a.28.2.1 (A:) ImmE8 (I 5.7 1.1E+02 0.008 23.2 1.6 39 6-44 11-56 (85)
9 d1sxjb1 a.80.1.1 (B:231-322) R 5.2 5.2E+02 0.038 18.3 6.6 42 213-254 18-60 (92)
10 d2vglb_ a.118.1.10 (B:) Adapti 4.9 1.1E+03 0.079 21.7 9.3 133 171-310 364-500 (579)
No 1
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.83 E-value=38 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=28.7
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHH
Q 011484 160 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 200 (484)
Q Consensus 160 awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLt 200 (484)
-.++.||.+-++.+-..||.+|.. ||.+++-|+.
T Consensus 5 ~Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 5 DLLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 457788989889999999998875 9999998874
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.31 E-value=4.5 Score=25.59 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.6
Q ss_pred hhccChHH
Q 011484 372 RHHYCPPV 379 (484)
Q Consensus 372 ~~HYHPsV 379 (484)
-+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 36888864
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.05 E-value=64 Score=26.17 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.7
Q ss_pred hccccC----hhhhhhHHHHHhhcc--cchHHHHHHHHHHHH
Q 011484 186 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 221 (484)
Q Consensus 186 ~pHl~N----P~lL~DFLtds~d~g--g~isllAL~~LF~L~ 221 (484)
.|+..| ..++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 566666 345666999999986 678888877665544
No 4
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.58 E-value=2.5e+02 Score=25.84 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccc
Q 011484 248 HRAKFFELLDSCLRSPLLPA-----YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHR 312 (484)
Q Consensus 248 ~ra~Fl~LL~~~Lks~~Lp~-----~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~l~~Ll~~ 312 (484)
|-.....++.+++.+..... +.-..|++||+.+.-..-|.---.+..+++++..++++++..|-+
T Consensus 104 HL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~ 173 (343)
T d2jaka1 104 HLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 173 (343)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred hHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556677778887654333 233589999999988888888888888999999999998877643
No 5
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=9.81 E-value=1.6e+02 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.4
Q ss_pred chHHHHHHHhh-CcC
Q 011484 229 PNFYEKLYALL-VPS 242 (484)
Q Consensus 229 prFY~~LY~LL-dP~ 242 (484)
|.|..+||.|| +|.
T Consensus 3 P~F~~kL~~~l~~~~ 17 (92)
T d2htsa_ 3 PAFVNKLWSMVNDKS 17 (92)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHcCcC
Confidence 67999999988 554
No 6
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=8.87 E-value=2.3e+02 Score=21.19 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhhhhHHHHHhhc---c-cchHHHHHHHHHHHHHhcCC
Q 011484 153 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---G-GVVSVMALSSLFILMTQHGL 226 (484)
Q Consensus 153 ~k~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d~---g-g~isllAL~~LF~L~~~~Nl 226 (484)
++.++..+.-.+|...-...++ ....+.|.++-+=+.|+-+.+.-..+.+. + ..-...++..|.++|.++++
T Consensus 7 ~~~~Y~~iL~~Yl~~~~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 7 IEQRYHQLLSRYIAELTETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 3444444444444433333444 77888898899999999888887766642 2 23457789999999988764
No 7
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.61 E-value=56 Score=24.28 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHhhccChHHHHHHHHhhc
Q 011484 368 IDTLRHHYCPPVSRFVLSLEN 388 (484)
Q Consensus 368 L~~L~~HYHPsVa~~A~~l~~ 388 (484)
+..|+.|-+|.|+.+|+.|..
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~ 70 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMIS 70 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHH
Confidence 567889999999999998865
No 8
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=1.1e+02 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHhcCCchHHHHHHHHHhhc----c---CCccccch
Q 011484 6 IRPSIINYFIALFTLRSLSVLLQTFLLQSI----S---STLIYFTY 44 (484)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~d~~~~t~ 44 (484)
+..-|+.++..++..+.-+.+...++..|. | .|+-|||-
T Consensus 11 TE~EFl~fl~~i~n~~~~e~~~d~ll~hF~~iteHP~gsDLIfYP~ 56 (85)
T d1gxha_ 11 TETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPE 56 (85)
T ss_dssp CHHHHHHHHHHHHHTCSSSHHHHHHHHHHHHTTCCTTTTHHHHSCC
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCceeeeCC
Confidence 445577888888777665556556666555 4 88999974
No 9
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.17 E-value=5.2e+02 Score=18.32 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHH-hhCcCccccchHHHHHH
Q 011484 213 ALSSLFILMTQHGLEYPNFYEKLYA-LLVPSIFMAKHRAKFFE 254 (484)
Q Consensus 213 AL~~LF~L~~~~Nld~prFY~~LY~-LLdP~l~~sk~ra~Fl~ 254 (484)
|...+-.++...+....+..+.||+ +++-.-+....+..++.
T Consensus 18 a~~~l~~~l~~~Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~ 60 (92)
T d1sxjb1 18 SIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIK 60 (92)
T ss_dssp HHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 4444445555667777777777777 33322233334444444
No 10
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=1.1e+03 Score=21.69 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=64.5
Q ss_pred hhhHHHHHHHhhhhhhccccChhhhhhHHHHHhhccc-chHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCccccchH
Q 011484 171 VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGG-VVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHR 249 (484)
Q Consensus 171 ~~l~k~vL~~L~k~i~pHl~NP~lL~DFLtds~d~gg-~isllAL~~LF~L~~~~Nld~prFY~~LY~LLdP~l~~sk~r 249 (484)
.+..+.++..+.+-+.-+-.......|.+.+....++ .+.-.|+..+-+++..+.-.+..--..|...++ .+-...-+
T Consensus 364 ~~~~~~ai~aI~~la~~~~~~~~~~i~~Ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~ii~~L~~~l~-~~~~~~~~ 442 (579)
T d2vglb_ 364 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD-SLDEPDAR 442 (579)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT-TCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-hcCcHHHH
Confidence 4455555555554221111222334455555555443 344456666667776665555666666766553 22122222
Q ss_pred HHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc-ccccc
Q 011484 250 AKFFELLDSCLRSPLLP--AYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS-INCLL 310 (484)
Q Consensus 250 a~Fl~LL~~~Lks~~Lp--~~rVAAFIKRLlrlaL~aPP~~~~~iL~lI~nLLkrhP~-l~~Ll 310 (484)
+...-++-.+ .++++ ...+..|+++ -...++..-+.+|..+-+|+-+.|. ++.|+
T Consensus 443 ~~~iwilGEy--~~~i~~~~~ll~~l~~~----f~~e~~~vq~~iLta~~Kl~~~~p~~~~~~~ 500 (579)
T d2vglb_ 443 AAMIWIVGEY--AERIDNADELLESFLEG----FHDESTQVQLTLLTAIVKLFLKKPSETQELV 500 (579)
T ss_dssp HHHHHHHHTT--CTTCTTHHHHHHHHSTT----CSSSCHHHHHHHHHHHHHHHTTCCSTTHHHH
T ss_pred HHHHHHHhCc--ccccccHHHHHHHHHHh----hhhCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 2222233222 22222 2222222222 1234666777888888888877774 44444
Done!