BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011487
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 209/349 (59%), Gaps = 10/349 (2%)
Query: 141 FRGIKAAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLR 200
+ +K YW + ++ID++ FTH++ AF P+ +L ++ + + T++
Sbjct: 1 MQNVKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQ 60
Query: 201 VQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN 260
+N +K + + MA +R FI+S+I +AR+ GF G+DLDWE+P +
Sbjct: 61 RKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLS 120
Query: 261 DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYM 320
DM+NL L +WRT+IN EAR + + LLLTAAV + R YP+E++ + +
Sbjct: 121 AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVN----GLNYPVESLARNL 176
Query: 321 NWVSPMCFDYHG-SWE-NFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYG 378
+W++ M +D++G +W + T HA L DP +++S S GI +WIQAGVP +KLV+G+P YG
Sbjct: 177 DWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYG 236
Query: 379 RTWKLKDPDVNGIGAPALG---VGP-GDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
W+L + +++G+ APA G VG DG +TYN+I + +E A V++AT V + ++
Sbjct: 237 YAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYS 296
Query: 435 GDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSKQASIAW 483
G +WI YDD +++ KV + K +GL GYF W + D++W LS+ AS W
Sbjct: 297 GSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTW 345
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 209/349 (59%), Gaps = 10/349 (2%)
Query: 141 FRGIKAAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLR 200
+ +K YW + ++ID++ FTH++ AF P+ +L ++ + + T++
Sbjct: 1 MQNVKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQ 60
Query: 201 VQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN 260
+N +K + + MA +R FI+S+I +AR+ GF G+DLDW++P +
Sbjct: 61 RKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLS 120
Query: 261 DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYM 320
DM+NL L +WRT+IN EAR + + LLLTAAV + R YP+E++ + +
Sbjct: 121 AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVN----GLNYPVESLARNL 176
Query: 321 NWVSPMCFDYHG-SWE-NFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYG 378
+W++ M +D++G +W + T HA L DP +++S S GI +WIQAGVP +KLV+G+P YG
Sbjct: 177 DWINLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYG 236
Query: 379 RTWKLKDPDVNGIGAPALG---VGP-GDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
W+L + +++G+ APA G VG DG +TYN+I + +E A V++AT V + ++
Sbjct: 237 YAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYS 296
Query: 435 GDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSKQASIAW 483
G +WI YDD +++ KV + K +GL GYF W + D++W LS+ AS W
Sbjct: 297 GSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTW 345
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 201/343 (58%), Gaps = 7/343 (2%)
Query: 144 IKAAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQN 203
+KA+YW ++FP + ID+S FTH++ AF +T ++ V+ + K T++ +N
Sbjct: 5 VKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRN 64
Query: 204 SHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQD 263
+K D ++ MAS +R FI+S+I +AR YGF G+DLDWE+P++ +
Sbjct: 65 PSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATE 124
Query: 264 MSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWV 323
M+N L ++WR+++ EA + LLL AAV++++ + YP+ A+ ++WV
Sbjct: 125 MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYY----SVLYPVSAVASSLDWV 180
Query: 324 SPMCFDYHG-SWENFTGLHAALNDP-RSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTW 381
+ M +D++G W TG AAL DP + S G SWIQAG+PA+K V+G P YG W
Sbjct: 181 NLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYAW 240
Query: 382 KLKDPDVNGIGAPALGVGPG-DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIG 440
+L + + + AP G DG + Y QI KF ++ A V+++T V + +AG +WIG
Sbjct: 241 RLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNWIG 300
Query: 441 YDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSKQASIAW 483
YDD SI KV++AK +GL GYF W +G D + LS+ AS AW
Sbjct: 301 YDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAW 343
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 165/341 (48%), Gaps = 23/341 (6%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y P F I+ TH+ YAF + ++ + L + L+ +NS
Sbjct: 11 AQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQ 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND---- 261
+K F+ M ST E R FI S I+ R+Y FDG+D DWE+P +
Sbjct: 69 LKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPP 128
Query: 262 QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
QD +L ++ R + QEA+ N L++TAAV I GY I +++Y++
Sbjct: 129 QDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAG----ISNIQSGYEIPQLSQYLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL----NDPRSN--ISTSYGIGSWIQAGVPAQKLVMGLP 375
++ M +D HGSWE +TG ++ L D SN ++ Y + W G PA+KL++G P
Sbjct: 185 YIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVGPG------DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YG + L +P GIGAP G GP G+ Y +I F ++ A +DA
Sbjct: 245 TYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTF-LKNGATQGWDAPQEV 303
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+++ G+ W+GYD+V S +K Q+ K GG WAI D
Sbjct: 304 PYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLD 344
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 165/341 (48%), Gaps = 23/341 (6%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y P F I+ TH+ YAF + ++ + L + L+ +NS
Sbjct: 15 AQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYQAFNGLKNKNSQ 72
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND---- 261
+K F+ M ST E R FI S I+ R+Y FDG+D DWE+P +
Sbjct: 73 LKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPP 132
Query: 262 QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
QD +L ++ R + QEA+ N L++TAAV I GY I +++Y++
Sbjct: 133 QDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAG----ISNIQSGYEIPQLSQYLD 188
Query: 322 WVSPMCFDYHGSWENFTGLHAAL----NDPRSN--ISTSYGIGSWIQAGVPAQKLVMGLP 375
++ M +D HGSWE +TG ++ L D SN ++ Y + W G PA+KL++G P
Sbjct: 189 YIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFP 248
Query: 376 LYGRTWKLKDPDVNGIGAPALGVGPG------DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YG + L +P GIGAP G GP G+ Y +I F ++ A +DA
Sbjct: 249 TYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTF-LKNGATQGWDAPQEV 307
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+++ G+ W+GYD++ S +K Q+ K GG WAI D
Sbjct: 308 PYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLD 348
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y F +D S TH+ YAF +L+ T + L + L+ N
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--- 262
+K F+ M +T R F+NS I RKY FDG+DLDWE+P +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 263 -DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
D L + + QEA+ + LLL+AAV + GY ++ I + ++
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV----DAGYEVDKIAQNLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL------NDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375
+V+ M +D+HGSWE TG ++ L + ++++ + W+Q G PA KL++G+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YGR++ L +GAPA G G PG G+L Y ++ + + P
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVP-- 302
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+ F + W+G+DDV S K KV + K KGLGG WA+ D
Sbjct: 303 -YIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y F +D S TH+ YAF +L+ T + L + L+ N
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--- 262
+K F+ M +T R F+NS I RKY FDG+DLDWE+P +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 263 -DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
D L + + QEA+ + LLL+AAV + GY ++ I + ++
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV----DAGYEVDKIAQNLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL------NDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375
+V+ M +D+HGSWE TG ++ L + ++++ + W+Q G PA KL++G+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YGR++ L +GAPA G G PG G+L Y ++ + + P
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVP-- 302
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+ F + W+G+DDV S K KV + K KGLGG WA+ D
Sbjct: 303 -YIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y F +D S TH+ YAF +L+ T + L + L+ N
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFA--GMTNHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--- 262
+K F+ M +T R F+NS I RKY FDG+DLDWE+P +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 263 -DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
D L + + QEA+ + LLL+AAV + GY ++ I + ++
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV----DAGYEVDKIAQNLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL------NDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375
+V+ M +D+HGSWE TG ++ L + ++++ + W+Q G PA KL++G+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YGR++ L +GAPA G G PG G+L Y ++ + + P
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVP-- 302
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+ F + W+G+DDV S K KV + K KGLGG WA+ D
Sbjct: 303 -YIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y F +D S TH+ YAF +L+ T + L + L+ N
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--- 262
+K F+ M +T R F+NS I RKY FDG+DLDWE+P +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 263 -DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
D L + + QEA+ + LLL+AAV + GY ++ I + ++
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV----DAGYEVDKIAQNLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL------NDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375
+V+ M +D+HGSWE TG ++ L + ++++ + W+Q G PA KL++G+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YGR++ L +GAPA G G PG G+L Y ++ + + P
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVP-- 302
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+ F + W+G+DDV S K KV + K KGLGG WA+ D
Sbjct: 303 -YIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 146 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSH 205
A Y F +D S TH+ YAF +L+ T + L + L+ N
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 206 IKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--- 262
+K F+ M +T R F+NS I RKY FDG+DLDWE+P +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 263 -DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMN 321
D L + + QEA+ + LLL+AAV + GY ++ I + ++
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV----DAGYEVDKIAQNLD 184
Query: 322 WVSPMCFDYHGSWENFTGLHAAL------NDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375
+V+ M +D+HGSWE TG ++ L + ++++ + W++ G PA KL++G+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMP 244
Query: 376 LYGRTWKLKDPDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVA 429
YGR++ L +GAPA G G PG G+L Y ++ + + P
Sbjct: 245 TYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVP-- 302
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
+ F + W+G+DDV S K KV + K KGLGG WA+ D
Sbjct: 303 -YIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLD 342
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 27/339 (7%)
Query: 150 PSFNDFPASSIDTSYFTHIYYAF--LLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIK 207
P F +ID TH+ YAF + T+ L D+ E + L+ +N+ +K
Sbjct: 15 PIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDY----EALNGLKDKNTELK 70
Query: 208 XXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----QD 263
P FS M ST + R IFI S I R+Y FDG++LDW++P + +D
Sbjct: 71 TLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKD 130
Query: 264 MSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWV 323
++L K+ R + +E+ + LLLT+ I GY I +++ ++++
Sbjct: 131 KHLFSVLVKEMRKAFEEESVEKDIPRLLLTS----TGAGIIDVIKSGYKIPELSQSLDYI 186
Query: 324 SPMCFDYHGSWENFTGLHAALNDPRSNISTSYG------IGSWIQAGVPAQKLVMGLPLY 377
M +D H + +TG ++ L +I S I W G ++KL++G P Y
Sbjct: 187 QVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAY 246
Query: 378 GRTWKLKDPDVNGIGAPALGVGP------GDGVLTYNQIVKFNMEGTAAVVFDATPVAYH 431
G T+ L DP GIGAP + GP G+L Y ++ F EG A V+DA +
Sbjct: 247 GHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEG-ATEVWDAPQEVPY 305
Query: 432 SFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
++ G+ W+GYD+V S KLK Q+ K LGG W + D
Sbjct: 306 AYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMD 344
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 167/327 (51%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N +K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
P FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTALVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG+W
Sbjct: 137 KAEFAREAQ-AGTERLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGAW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L +D S S + Y + ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD 251
Query: 390 GIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
G GAP G G PG G+L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 G-GAPISGPGIPGRFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N ++K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
P FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTTLVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG+W
Sbjct: 137 KAEFIREAQ-AGTEQLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGAW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L D S S + Y + ++ G PA KLVMG+P +G+++ L +
Sbjct: 192 RQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASSKTD 251
Query: 390 GIGAPALGVG-PGD-----GVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
+GAP G G PG G+L Y +I F ++G F V Y + G+ W+ YDD
Sbjct: 252 -VGAPVSGPGIPGQFTKEKGILAYYEICDF-LQGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N +K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
P FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTALVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG+W
Sbjct: 137 KAEFAREAQ-AGTERLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGAW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L +D S S + Y + ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD 251
Query: 390 GIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
+GAP G G PG G+L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 -VGAPISGPGIPGRFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 168/331 (50%), Gaps = 31/331 (9%)
Query: 155 FPASSIDTSYFTHIYYAFLL---PEPKTFKLN-VTLLDHAKLLELVGTLRVQNSHIKXXX 210
FP +ID TH+ Y F E T++ N VTL D + TL+ +N +K
Sbjct: 21 FP-DAIDPFLCTHVIYTFANISNNEIDTWEWNDVTLYD------TLNTLKNRNPKLKTLL 73
Query: 211 XXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALL 270
P FSK+AS ++R FI S R +GFDG+DL W +P +D +L L
Sbjct: 74 SVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTTL 132
Query: 271 FKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDY 330
K+ + +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+
Sbjct: 133 VKEMKAEFIREAQ-AGTEQLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDF 187
Query: 331 HGSWENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKD 385
HG+W G H+ L D S S + Y + ++ G PA KLVMG+P +GR++ L
Sbjct: 188 HGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 386 PDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWI 439
+ +GAP G G PG G+L Y +I F + G F V Y + G+ W+
Sbjct: 248 SKTD-VGAPVSGPGIPGRFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWV 304
Query: 440 GYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
YDD S+K K ++ K++ L G WA+ D
Sbjct: 305 AYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N +K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
P FS +AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTALVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG+W
Sbjct: 137 KAEFAREAQ-AGTERLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGAW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L +D S S + Y + ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTD 251
Query: 390 GIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
G GAP G G PG G+L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 G-GAPISGPGIPGRFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 168/331 (50%), Gaps = 31/331 (9%)
Query: 155 FPASSIDTSYFTHIYYAFLL---PEPKTFKLN-VTLLDHAKLLELVGTLRVQNSHIKXXX 210
FP +ID TH+ Y+F E T++ N VTL D + TL+ +N +K
Sbjct: 21 FP-DAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYD------TLNTLKNRNPKLKTLL 73
Query: 211 XXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALL 270
P FS +AS ++R FI S R +GFDG+DL W +P +D +L L
Sbjct: 74 SVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTTL 132
Query: 271 FKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDY 330
K+ + +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+
Sbjct: 133 VKEMKAEFIREAQ-AGTEQLLLSAAVS-AGKIAI---DRGYDIAQISRHLDFISLLTYDF 187
Query: 331 HGSWENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKD 385
HG+W G H+ L D S S + Y + ++ G PA KLVMG+P +GR++ L
Sbjct: 188 HGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS 247
Query: 386 PDVNGIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWI 439
+ +GAP G G PG G+L Y +I F + G F V Y + G+ W+
Sbjct: 248 SKTD-VGAPVSGPGVPGRFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWV 304
Query: 440 GYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
YDD S+K K ++ K++ L G WA+ D
Sbjct: 305 AYDDQESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 164/328 (50%), Gaps = 24/328 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP ++D THI Y+F ++ + L ++ TL+ +N ++K
Sbjct: 21 FP-DALDRFLCTHIIYSF--ANISNDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
FSK+AS ++R FI S R +GFDG+DL W +P +D + L K+
Sbjct: 78 WNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKQHFTTLIKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ LLL+AA+ A + TI Y I I+++++++S M +D+HG+W
Sbjct: 137 KAEFIKEAQ-PGKKQLLLSAALS-AGKVTI---DSSYDIAKISQHLDFISIMTYDFHGAW 191
Query: 335 ENFTGLHAALNDPRSNIS------TSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDV 388
TG H+ L + + S T Y +G ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASSET 251
Query: 389 NGIGAPALGVG-PGD-----GVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYD 442
G+GAP G G PG G L Y +I F + G V Y + G+ W+GYD
Sbjct: 252 -GVGAPISGPGIPGRFTKEAGTLAYYEICDF-LRGATVHRILGQQVPYAT-KGNQWVGYD 308
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S+K KVQ+ K + L G WA+ D
Sbjct: 309 DQESVKSKVQYLKDRQLAGAMVWALDLD 336
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 162/330 (49%), Gaps = 24/330 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
F +ID +H+ Y+F E K+ + L + + +L+ +N +K
Sbjct: 21 FTPENIDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSIGG 78
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
F M + +R FINS I R + FDG+D+ W +P + ++ ++ +L +
Sbjct: 79 YLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYP-DQKENTHFTVLIHEL 137
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ ++ + LLLTA V A R I Y +E + K +++++ + FD+HGSW
Sbjct: 138 AEAFQKDFTKSTKERLLLTAGVS-AGRQMI---DNSYQVEKLAKDLDFINLLSFDFHGSW 193
Query: 335 EN--FTGLHAALND------PRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDP 386
E TG ++ L+ P S + Y +G WI G+P++K+VMG+P YG ++ L
Sbjct: 194 EKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASA 253
Query: 387 DVNGIGAPALGVGPG------DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIG 440
+ +GAPA G G G L Y +I +F ++G V Y + G+ W+G
Sbjct: 254 ETT-VGAPASGPGAAGPITESSGFLAYYEICQF-LKGAKITRLQDQQVPY-AVKGNQWVG 310
Query: 441 YDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
YDDV S++ KVQF K+ LGG W+I D
Sbjct: 311 YDDVKSMETKVQFLKNLNLGGAMIWSIDMD 340
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N ++K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGW-RDKRHLTTLVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG+W
Sbjct: 137 KAEFVREAQ-AGTEQLLLSAAVT-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGAW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L D S S + Y + ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD 251
Query: 390 GIGAPALGVG-PG-----DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
+GAP G G PG G+L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 -VGAPISGPGIPGRFTKWKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N ++K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTTLVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG W
Sbjct: 137 KAEFVREAQ-AGTEQLLLSAAVT-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGGW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L +D S S + Y + ++ G PA KLVMG+P +GR++ L
Sbjct: 192 RGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSSTR 251
Query: 390 GIGAPALGVG-PGD-----GVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
+GAP G G PG G+L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 -VGAPISGPGIPGQFTKEKGILAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 23/327 (7%)
Query: 155 FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXX 214
FP +ID TH+ Y+F +++ + L + + TL+ +N ++K
Sbjct: 21 FP-DAIDPFLCTHVIYSF--ANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGG 77
Query: 215 XXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274
FSK+AS ++R FI S R +GFDG+DL W +P +D +L L K+
Sbjct: 78 WNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGW-RDKRHLTTLVKEM 136
Query: 275 RTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSW 334
+ +EA+ T LLL+AAV A + I RGY I I+++++++S + +D+HG W
Sbjct: 137 KAEFVREAQ-AGTEQLLLSAAVP-AGKIAI---DRGYDIAQISRHLDFISLLTYDFHGGW 191
Query: 335 ENFTGLHAAL----NDPRSNISTS-YGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVN 389
G H+ L +D S S + Y + ++ G PA KLVMG+P +GR++ L +
Sbjct: 192 RGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSKTD 251
Query: 390 GIGAPALGVG-PGD-----GVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDD 443
+GAP G G PG G L Y +I F + G F V Y + G+ W+ YDD
Sbjct: 252 -VGAPISGPGIPGQFTKEKGTLAYYEICDF-LHGATTHRFRDQQVPYAT-KGNQWVAYDD 308
Query: 444 VLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S+K K ++ K++ L G WA+ D
Sbjct: 309 QESVKNKARYLKNRQLAGAMVWALDLD 335
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 30/264 (11%)
Query: 222 FSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQ- 280
F AST+ TRA F + +E + +GFDG+D+DWE+PA++ D +N+ LL ++ R ++
Sbjct: 120 FPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSY 179
Query: 281 EARITNTSPLLLTAAVYFASRFTIYGGPRGYPI---EAINKYMNWVSPMCFDYHGSWENF 337
A N +F GP Y + + ++ ++ M +DY GSW++
Sbjct: 180 SATYAN--------GYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNINLMAYDYAGSWDSV 231
Query: 338 TG----LHAALNDPRSN-ISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNGIG 392
+G L+ + ++P S ST + ++I AGVPA K+++G+P+YGR + D G G
Sbjct: 232 SGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD----GPG 287
Query: 393 APALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDS--WIGYDDVLSI 447
P +G G G+ Y + K A V+ D+ A +S+ S I YD +
Sbjct: 288 KPYSTIGEGSWESGIWDYKVLPK----AGATVITDSAAGATYSYDSSSRTMISYDTPDMV 343
Query: 448 KLKVQFAKSKGLGGYFFWAIGQDK 471
+ KV +AK GLGG FW DK
Sbjct: 344 RTKVSYAKGLGLGGSMFWEASADK 367
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 32/285 (11%)
Query: 220 NVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND---------QDMSNLALL 270
N FS +A+T TR +F NS ++ RKY FDGVDLDWE+P + +D N LL
Sbjct: 136 NRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLL 195
Query: 271 FKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDY 330
+ R ++ + LL A+ + T I AI ++W++ M +D+
Sbjct: 196 LSKIREKLDAAGAVDGKKYLLTIAS---GASATYAANTELAKIAAI---VDWINIMTYDF 249
Query: 331 HGSWENFTGLHAALN-DPRSN---------ISTSYGIGSWIQAGVPAQKLVMGLPLYGRT 380
+G+W+ + +A LN DP ++ + + G + AGVPA KLV+G+P YGR
Sbjct: 250 NGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRG 309
Query: 381 WKLKDPDVNG-----IGAPALGVGPGDGVLTYNQIVKF-NMEGTAAVVFDATPVAY-HSF 433
W NG G ++G Y+ + N G D V Y ++
Sbjct: 310 WDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNGYTRYWNDTAKVPYLYNA 369
Query: 434 AGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSKQ 478
+ +I YDD S+ K + KSKGLGG FW + D++ TL +
Sbjct: 370 SNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRNKTLQNK 414
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 158/338 (46%), Gaps = 48/338 (14%)
Query: 165 FTHIYYAF--LLPEPKTFKLNVTLLDHAK----------------LLELVGTLRVQNSHI 206
FTHI YAF + P + + L+ T D K ++ + L+ N ++
Sbjct: 29 FTHILYAFANIRPSGEVY-LSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266
K PN F AST+E R F ++++++ + GFDG+D+DWE+P +++ ++
Sbjct: 88 KTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYPEDEKQAND 146
Query: 267 LALLFKQWRTSINQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGY---PIEAINKYMNW 322
LL K R +++ A+ N LLT A GP+ Y + ++KY+++
Sbjct: 147 FVLLLKACREALDAYSAKHPNGKKFLLTIAS--------PAGPQNYNKLKLAEMDKYLDF 198
Query: 323 VSPMCFDYHGSWENFTG----LHAALNDPRSN-ISTSYGIGSWIQAGVPAQKLVMGLPLY 377
+ M +D+ GSW+ +G + + P S S+ + +I+AGVPA K+V+G+PLY
Sbjct: 199 WNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLY 258
Query: 378 GRTWKLKDPDVNGIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
GR + D GIG GVG G +GV Y + + +G + +Y
Sbjct: 259 GRAFASTD----GIGTSFNGVGGGSWENGVWDYKDMPQ---QGAQVTELEDIAASYSYDK 311
Query: 435 GDSW-IGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK 471
+ I YD V K ++ G+GG +W DK
Sbjct: 312 NKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDK 349
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 158/338 (46%), Gaps = 48/338 (14%)
Query: 165 FTHIYYAF--LLPEPKTFKLNVTLLDHAK----------------LLELVGTLRVQNSHI 206
FTHI YAF + P + + L+ T D K ++ + L+ N ++
Sbjct: 29 FTHILYAFANIRPSGEVY-LSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266
K PN F AST+E R F ++++++ + GFDG+D+DW++P +++ ++
Sbjct: 88 KTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYPEDEKQAND 146
Query: 267 LALLFKQWRTSINQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGY---PIEAINKYMNW 322
LL K R +++ A+ N LLT A GP+ Y + ++KY+++
Sbjct: 147 FVLLLKACREALDAYSAKHPNGKKFLLTIAS--------PAGPQNYNKLKLAEMDKYLDF 198
Query: 323 VSPMCFDYHGSWENFTG----LHAALNDPRSN-ISTSYGIGSWIQAGVPAQKLVMGLPLY 377
+ M +D+ GSW+ +G + + P S S+ + +I+AGVPA K+V+G+PLY
Sbjct: 199 WNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLY 258
Query: 378 GRTWKLKDPDVNGIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
GR + D GIG GVG G +GV Y + + +G + +Y
Sbjct: 259 GRAFASTD----GIGTSFNGVGGGSWENGVWDYKDMPQ---QGAQVTELEDIAASYSYDK 311
Query: 435 GDSW-IGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK 471
+ I YD V K ++ G+GG +W DK
Sbjct: 312 NKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDK 349
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 158/338 (46%), Gaps = 48/338 (14%)
Query: 165 FTHIYYAF--LLPEPKTFKLNVTLLDHAK----------------LLELVGTLRVQNSHI 206
FTHI YAF + P + + L+ T D K ++ + L+ N ++
Sbjct: 29 FTHILYAFANIRPSGEVY-LSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNL 87
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266
K PN F AST+E R F ++++++ + GFDG+D++WE+P +++ ++
Sbjct: 88 KTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYPEDEKQAND 146
Query: 267 LALLFKQWRTSINQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGY---PIEAINKYMNW 322
LL K R +++ A+ N LLT A GP+ Y + ++KY+++
Sbjct: 147 FVLLLKACREALDAYSAKHPNGKKFLLTIAS--------PAGPQNYNKLKLAEMDKYLDF 198
Query: 323 VSPMCFDYHGSWENFTG----LHAALNDPRSN-ISTSYGIGSWIQAGVPAQKLVMGLPLY 377
+ M +D+ GSW+ +G + + P S S+ + +I+AGVPA K+V+G+PLY
Sbjct: 199 WNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLY 258
Query: 378 GRTWKLKDPDVNGIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
GR + D GIG GVG G +GV Y + + +G + +Y
Sbjct: 259 GRAFASTD----GIGTSFNGVGGGSWENGVWDYKDMPQ---QGAQVTELEDIAASYSYDK 311
Query: 435 GDSW-IGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK 471
+ I YD V K ++ G+GG +W DK
Sbjct: 312 NKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDK 349
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 157/337 (46%), Gaps = 45/337 (13%)
Query: 165 FTHIYYAFLLPEPKTFKLNVT--LLDHAK----------------LLELVGTLRVQNSHI 206
TH+ YAF P+T ++ +T D K ++ + L+ QN ++
Sbjct: 69 LTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNL 128
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266
K PN F+ AST R F + +++ + GFDG+D+DWE+P NDQ ++
Sbjct: 129 KVLLSIGGWTYSPN-FAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQAND 187
Query: 267 LALLFKQWRTSINQ-EARITNTSPLLLTAAVYFASRFTIYGGP---RGYPIEAINKYMNW 322
LL K+ RT+++ A LLT A GP + ++ +++ +++
Sbjct: 188 FVLLLKEVRTALDSYSAANAGGQHFLLTVAS--------PAGPDKIKVLHLKDMDQQLDF 239
Query: 323 VSPMCFDYHGSWENFTGLHAAL-NDPRSNISTSYGIGSWIQ----AGVPAQKLVMGLPLY 377
+ M +DY GS+ + +G A + ND + +ST + + + GVPA K+V+G+PLY
Sbjct: 240 WNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLY 299
Query: 378 GRTWKLKDPDVNGIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
GR++ + +G G P GVG G +GV Y + + T V+ D +
Sbjct: 300 GRSF----ANTDGPGKPYNGVGQGSWENGVWDYKALPQ--AGATEHVLPDIMASYSYDAT 353
Query: 435 GDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK 471
I YD+ LK + KS GLGG +W DK
Sbjct: 354 NKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSDK 390
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 45/337 (13%)
Query: 165 FTHIYYAFLLPEPKTFKLNVT-----LLDHA-------------KLLELVGTLRVQNSHI 206
TH+ YAF P+T ++ +T + H ++ + L+ QN ++
Sbjct: 31 LTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNL 90
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266
K PN F+ AST R F + +++ + GFDG+D+DWE+P NDQ ++
Sbjct: 91 KVLLSIGGWTYSPN-FAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQAND 149
Query: 267 LALLFKQWRTSINQ-EARITNTSPLLLTAAVYFASRFTIYGGP---RGYPIEAINKYMNW 322
LL ++ RT+++ A LLT A GP + ++ +++ +++
Sbjct: 150 FVLLLREVRTALDSYSAANAGGQHFLLTVAS--------PAGPDKIKVLHLKDMDQQLDF 201
Query: 323 VSPMCFDYHGSWENFTGLHAAL-NDPRSNISTSYGIGSWIQ----AGVPAQKLVMGLPLY 377
+ M +DY GS+ + +G A + ND + +ST + + + GVPA K+V+G+PLY
Sbjct: 202 WNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLY 261
Query: 378 GRTWKLKDPDVNGIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA 434
GR++ + +G G P GVG G +GV Y + + T V+ D +
Sbjct: 262 GRSFA----NTDGPGKPYNGVGQGSWENGVWDYKALPQ--AGATEHVLPDIMASYSYDAT 315
Query: 435 GDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK 471
I YD+ LK + KS GLGG +W DK
Sbjct: 316 NKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSDK 352
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M FD++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSFDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 287 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 346
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 347 DQLSAETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 397
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 398 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 457
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 458 IPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 516
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 517 DARSVQAKGKYVLDKQLGGLFSWEIDAD 544
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSAETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSAETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGVD+DWE+P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGVD+DWE+P + +A L ++ RT +NQ+ IT+
Sbjct: 115 TPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 172
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 173 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 225
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 226 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 285
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 286 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 345
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 346 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 403
Query: 467 IGQDK 471
+GQD
Sbjct: 404 LGQDN 408
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSTETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGVD+DW++P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 127/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +R F S + I + YGFDGVD+DWE+P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGVD++WE+P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGVD++WE+P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNT 287
T +RA F S + I + YGFDGV++DWE+P + +A L ++ RT +NQ+ IT+
Sbjct: 116 TPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAAL-QEIRTLLNQQT-ITDG 173
Query: 288 S---PLLLTAA----VYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGL 340
P LT A +F SR+ + I +++++ M +D G WE T
Sbjct: 174 RQALPYQLTIAGAGGAFFLSRYYS-------KLAQIVAPLDYINLMTYDLAGPWEKVTNH 226
Query: 341 HAALNDPRS-----NISTSYGIG-SW-----------------------IQAGVPAQKLV 371
AAL + N +G SW + GVP+ K+V
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIV 286
Query: 372 MGLPLYGRTWK----------------LKDP----DVNGIGAPALGVGPGDGVLTYNQIV 411
MG+P YGR +K +DP D +G + +Y Q+
Sbjct: 287 MGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLE 346
Query: 412 KFNMEGTAAVVF-----DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466
+ ++G TP YH+ G ++ YDD S K K ++ K + LGG FW
Sbjct: 347 QM-LQGNYGYQRLWNDKTKTPYLYHAQNG-LFVTYDDAESFKYKAKYIKQQQLGGVMFWH 404
Query: 467 IGQDK 471
+GQD
Sbjct: 405 LGQDN 409
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 114/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DW+FP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 113/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DW FP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 43/289 (14%)
Query: 222 FSKMASTKETRAIFINSTIEIARKYG----------------FDGVDLDWEFPAND---- 261
FSK A+T+ +R ++S I++ K FDG+D+DWE+P +
Sbjct: 133 FSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLA 192
Query: 262 -------QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIE 314
D +N L ++R ++ N +L +A A+ I G G+
Sbjct: 193 GNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVL--SAFLPANPADIDAG--GWDDP 248
Query: 315 AINKYMNWVSPMCFDYHGSWE-NFTGLHAALND-------PRSNISTSYGIGSWIQAGVP 366
A K +++ S +D HG+W TG A L D P S + ++ AG+
Sbjct: 249 ANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGID 308
Query: 367 AQKLVMGLPLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDAT 426
++L +GL YGR W +V+ G PA PG K GT +DA
Sbjct: 309 PKQLGLGLAAYGRGW-TGAKNVSPWG-PATDGAPGTYETANEDYDKLKTLGTDH--YDAA 364
Query: 427 PVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTL 475
+ + G W YD++ + K K + SKGLGG +W + D++ L
Sbjct: 365 TGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGDRNGEL 413
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 113/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+ WEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M +D++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 113/268 (42%), Gaps = 36/268 (13%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND---------QDMSNLALLFKQWRTSI 278
K R F+ S E + + F DGVD+DWEFP QD LL K+ R +
Sbjct: 264 KVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAML 323
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN---KYMNWVSPMCFDYHGSWE 335
+Q + T L +A I G A N M+ + M + ++G+++
Sbjct: 324 DQLSVETGRKYELTSA---------ISAGKDKIDKVAYNVAQNSMDHIFLMSYAFYGAFD 374
Query: 336 -NFTGLHAALNDPRSNISTSY----GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNG 390
G ALN P T+Y G+ + + GV K+V+G +YGR W + N
Sbjct: 375 LKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNN 434
Query: 391 IGAPALGVGP-----GDGVLTYNQIVKFNMEGTAAVVFDAT---PVAYHSFAGDSWIGYD 442
I GP +G++ Y QI M G +DAT P + GD I +D
Sbjct: 435 IPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD-LITFD 493
Query: 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D S++ K ++ K LGG F W I D
Sbjct: 494 DARSVQAKGKYVLDKQLGGLFSWEIDAD 521
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 152/378 (40%), Gaps = 74/378 (19%)
Query: 160 IDTSYFTHIYYAF-LLPEPKTFKLNVTLLDHAKLLEL------------VGTLRVQNSHI 206
+D TH+ Y+F L+ + + N L D A L E+ + LR QN +
Sbjct: 49 LDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQADLQKLPALRKQNPDL 108
Query: 207 KXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----- 261
K FS A+T E+RA+FI S +I ++YG DG+DLDWEFP N
Sbjct: 109 KVLLSVGGWGA--RGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGAWGLV 166
Query: 262 ----QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGY-PIEAI 316
D N L K R ++ ++ L+T AV + P+ + ++A+
Sbjct: 167 ASQPADRDNFTALLKSLREAVGEQK--------LVTIAVGANAE-----SPKSWVDVKAV 213
Query: 317 NKYMNWVSPMCFDY-HGSWENFTGLHAALNDPRSNISTSYG----IGSWIQAGVPAQKLV 371
+N+++ +D +G+ + L+ + + P + Y + +++ AG+ +
Sbjct: 214 APVLNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQXN 273
Query: 372 MGLPLYGRT----------WKLKDPDVNGIGAPALG---------VG---PGDGVLTYNQ 409
+G+ YGR W D N + P G +G D + YN
Sbjct: 274 LGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYND 333
Query: 410 IVKFNMEGTAAVVF----DATPVAYHSFAGDSW-----IGYDDVLSIKLKVQFAKSKGLG 460
IV + D V + S + Y++ S+ +K + K+KGL
Sbjct: 334 IVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGLA 393
Query: 461 GYFFWAIGQDKDWTLSKQ 478
G FW G D L++Q
Sbjct: 394 GAXFWEYGADDQNQLARQ 411
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 114/303 (37%), Gaps = 73/303 (24%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND----------QDMSNLALLFKQWRTS 277
K+ R F+ S + + + F DGVD+DWEFP D L ++ R
Sbjct: 266 KKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVM 325
Query: 278 INQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN-----KYMNWVSPMCFDYH 331
+++ EA T L V + IE ++ +YM+++ M +D++
Sbjct: 326 LDELEAETGRTYELTSAIGVGYDK------------IEDVDYADAVQYMDYIFAMTYDFY 373
Query: 332 GSWENFTGLHAAL-------------------NDPRSN--ISTSYGIGSWIQAGVPAQKL 370
G W N G AL +P + GI + GVPA KL
Sbjct: 374 GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKL 433
Query: 371 VMGLPLYGRTWKLKDPD-VNGIGAPALGVGPG------------DGVLTYNQIVKFNMEG 417
V+G +YGR W+ PD + P G G DGV+ Y I F M G
Sbjct: 434 VLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSF-MLG 492
Query: 418 TAAVVFDATPVAYHSFAGDSW---------IGYDDVLSIKLKVQFAKSKGLGGYFFWAIG 468
+ Y + A W I +DD S+ K +AKS GL G F W I
Sbjct: 493 ANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEID 552
Query: 469 QDK 471
D
Sbjct: 553 ADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 114/303 (37%), Gaps = 73/303 (24%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND----------QDMSNLALLFKQWRTS 277
K+ R F+ S + + + F DGVD+DWEFP D L ++ R
Sbjct: 266 KKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVM 325
Query: 278 INQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN-----KYMNWVSPMCFDYH 331
+++ EA T L V + IE ++ +YM+++ M +D++
Sbjct: 326 LDELEAETGRTYELTSAIGVGYDK------------IEDVDYADAVQYMDYIFAMTYDFY 373
Query: 332 GSWENFTGLHAAL-------------------NDPRSN--ISTSYGIGSWIQAGVPAQKL 370
G W N G AL +P + GI + GVPA KL
Sbjct: 374 GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKL 433
Query: 371 VMGLPLYGRTWKLKDPD-VNGIGAPALGVGPG------------DGVLTYNQIVKFNMEG 417
V+G +YGR W+ PD + P G G DGV+ Y I F M G
Sbjct: 434 VLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSF-MLG 492
Query: 418 TAAVVFDATPVAYHSFAGDSW---------IGYDDVLSIKLKVQFAKSKGLGGYFFWAIG 468
+ Y + A W I +DD S+ K +AKS GL G F W I
Sbjct: 493 ANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEID 552
Query: 469 QDK 471
D
Sbjct: 553 ADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 113/303 (37%), Gaps = 73/303 (24%)
Query: 229 KETRAIFINSTIEIARKYGF-DGVDLDWEFPAND----------QDMSNLALLFKQWRTS 277
K+ R F+ S + + + F DGVD+DW FP D L ++ R
Sbjct: 266 KKNRDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAYIALMRELRVM 325
Query: 278 INQ-EARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN-----KYMNWVSPMCFDYH 331
+++ EA T L V + IE ++ +YM+++ M +D++
Sbjct: 326 LDELEAETGRTYELTSAIGVGYDK------------IEDVDYADAVQYMDYIFAMTYDFY 373
Query: 332 GSWENFTGLHAAL-------------------NDPRSN--ISTSYGIGSWIQAGVPAQKL 370
G W N G AL +P + GI + GVPA KL
Sbjct: 374 GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKL 433
Query: 371 VMGLPLYGRTWKLKDPD-VNGIGAPALGVGPG------------DGVLTYNQIVKFNMEG 417
V+G +YGR W+ PD + P G G DGV+ Y I F M G
Sbjct: 434 VLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSF-MLG 492
Query: 418 TAAVVFDATPVAYHSFAGDSW---------IGYDDVLSIKLKVQFAKSKGLGGYFFWAIG 468
+ Y + A W I +DD S+ K +AKS GL G F W I
Sbjct: 493 ANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEID 552
Query: 469 QDK 471
D
Sbjct: 553 ADN 555
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 150/382 (39%), Gaps = 73/382 (19%)
Query: 156 PASSIDTSYFTHIYYAF--LLPEP-KTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXX 212
P I + +H+ Y + L E + + +N L + V +L+ + H+K
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSV 83
Query: 213 XXXXX----DPNVFSKMASTKETRAI-FINSTIEIARKYGFDGVDLDWEFPAND------ 261
PN + + ++ R I FI S E+ + YGFDG+DL ++FP N
Sbjct: 84 GGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHG 143
Query: 262 ------QDMSNL----------ALLFKQWRTSINQEARIT-NTSPLLLTAAVYFASRFTI 304
+ + L A L K+ T++ ++ + + LL+ V T
Sbjct: 144 DLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTW 203
Query: 305 YGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAAL--------NDPRSNISTSYG 356
Y + I A+N +++V+ FD+ N + D ++++ +
Sbjct: 204 Y-----FDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQ 258
Query: 357 IGSWIQAGVPAQKLVMGLPLYGRTWKL-KDPDVNGIGAPALGVGPG--------DGVLTY 407
+ W+ G P+ K+ +G+ YG WKL KD + G+ GP G+L+Y
Sbjct: 259 VEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSY 318
Query: 408 -----------NQIVKFNMEGTAAVVFDATP----VAYHSFAGD----SWIGYDDVLSIK 448
NQ +K N E V D T +AY G W+ YDD S
Sbjct: 319 AEICGKLSNPQNQFLKGN-ESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSAS 377
Query: 449 LKVQFAKSKGLGGYFFWAIGQD 470
K +A+ K LGG + + D
Sbjct: 378 NKAAYARVKNLGGVALFDLSYD 399
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 117/281 (41%), Gaps = 39/281 (13%)
Query: 222 FSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFP---------ANDQDMSNLALLF 271
FS +A + R +F+ S ++ ++ F VD+DWE+P ++D+D N LL
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 286
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYH 331
K+ R++++ +N + + + A + + + ++ + M +D+
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXL------KKSNIDQLVANGLDNIYLMSYDFF 340
Query: 332 GS-WENFTGLHAALNDPRS-------NISTSYGIGSWI-QAGVPAQKLVMGLPLYGRTWK 382
G+ W ++ G H L P+ ++S I + G+P + + +G YGR+
Sbjct: 341 GTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAV 400
Query: 383 LKDPDVNG--IGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVF-----------DATPVA 429
D PALG +G + IVK M+ ++ +A
Sbjct: 401 GGDLTTRQYTXNGPALGTME-NGAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADF 459
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S A +I D ++K K ++A LGG F W+ QD
Sbjct: 460 LFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 39/281 (13%)
Query: 222 FSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFP---------ANDQDMSNLALLF 271
FS +A + R +F+ S ++ ++ F VD+DWE+P ++D D N LL
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYH 331
K+ R++++ +N + + + A + + + ++ + M +D+
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXL------KKSNIDQLVANGLDNIYLMSYDFF 340
Query: 332 GS-WENFTGLHAALNDPRS-------NISTSYGIGSWI-QAGVPAQKLVMGLPLYGRTWK 382
G+ W ++ G H L P+ ++S I + G+P + + +G YGR+
Sbjct: 341 GTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAV 400
Query: 383 LKDPDVNG--IGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVF-----------DATPVA 429
D PALG +G + IV M+ ++ +A
Sbjct: 401 GGDLTTRQYTXNGPALGTME-NGAPEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADF 459
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S A +I D ++K K ++A LGG F W+ QD
Sbjct: 460 LFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 39/281 (13%)
Query: 222 FSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFP---------ANDQDMSNLALLF 271
FS +A + R +F+ S ++ ++ F VD+DWE+P ++D D N LL
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYH 331
K+ R++++ +N + + + A + + ++ + M +D+
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXL------KXSNIDQLVANGLDNIYLMSYDFF 340
Query: 332 GS-WENFTGLHAALNDPRS-------NISTSYGIGSWI-QAGVPAQKLVMGLPLYGRTWK 382
G+ W ++ G H L P+ ++S I + G+P +K+ +G YGR+
Sbjct: 341 GTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEKIHLGYANYGRSAV 400
Query: 383 LKDPDVNG--IGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVF-----------DATPVA 429
D PALG +G + IV M+ ++ +A
Sbjct: 401 GGDLTTRQYTXNGPALGTME-NGAPEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADF 459
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S A +I D ++ K ++A LGG F W+ QD
Sbjct: 460 LFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 39/281 (13%)
Query: 222 FSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFP---------ANDQDMSNLALLF 271
FS +A + R +F+ S ++ ++ F VD+DWE+P ++D D N LL
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYH 331
+ R++++ +N + + + A + + ++ + M +D+
Sbjct: 287 XELRSALDSRFGYSNRXEISIACSGVXAXL------KXSNIDQLVANGLDNIYLMSYDFF 340
Query: 332 GS-WENFTGLHAALNDPRS-------NISTSYGIGSWI-QAGVPAQKLVMGLPLYGRTWK 382
G+ W ++ G H L P+ ++S I + G+P + + +G YGR+
Sbjct: 341 GTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAV 400
Query: 383 LKDPDVNG--IGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVF-----------DATPVA 429
D PALG +G + IVK M+ ++ +A
Sbjct: 401 GGDLTTRQYTXNGPALGTME-NGAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADF 459
Query: 430 YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
S A +I D ++K K ++A LGG F W+ QD
Sbjct: 460 LFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 220 NVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWE-FPANDQDMSNLALLFKQWRTSI 278
+ ++ + R +N+ ++ G+ GV +D+E A D+D+ +Q R +
Sbjct: 84 EIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVSAADRDL--FTGFLRQLRDRL 141
Query: 279 NQEARITNTSPLLLTAAVYFASRFTIYGGP--RGYPIEAINKYMNWVSPMCFDYHGSWEN 336
+LT AV + I P RGY I +N++ M +D+H +
Sbjct: 142 Q-------AGGYVLTIAVPAKTSDNI---PWLRGYDYGGIGAVVNYMFIMAYDWHHAGSE 191
Query: 337 FTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTW 381
G A + + R I + A VP++K+++G+PLYG W
Sbjct: 192 -PGPVAPITEIRRTIEFTI-------AQVPSRKIIIGVPLYGYDW 228
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 20/173 (11%)
Query: 229 KETRAIFINSTIEIARKYGFDGVDLDWEFPAND--QDMSNLALLFKQWRTSINQEARITN 286
K + F+N I + YGFDG+D+D E A + + + + K+ + ++ +
Sbjct: 97 KSQESDFVNEIIRLVDTYGFDGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDGK--- 153
Query: 287 TSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGS--WENFTGLHAAL 344
++T A F + G I ++ Y ++++P ++ G W++ + +
Sbjct: 154 --NFMITMAPEFP--YLTSSGKYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQ 209
Query: 345 NDPRSNISTSYGIGSWIQAG------VPAQKLVMGLPLYGR---TWKLKDPDV 388
++ YG+ + G +PA K V+GLP T +KDP+
Sbjct: 210 SNDEKKEDFLYGLTQRLVTGTDGFIKIPASKFVIGLPSNNDAAATGYVKDPNA 262
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 30/223 (13%)
Query: 219 PNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-DQDMSNLALLFKQWRTS 277
P F+ + + R I I ++Y DG D+D+E N D++ +L L+F
Sbjct: 77 PGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNWDKNFPSL-LVFA----- 130
Query: 278 INQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENF 337
+ + L T AV SR+ YG +Y ++++ +D G++ +
Sbjct: 131 --RGLYLAKEKNXLXTCAV--NSRWLNYGTE-------WEQYFDYINLXSYD-RGAFTDK 178
Query: 338 TGLHAALNDPRSNISTSYGIGSW-IQAGVPAQKLVMGLPLYGRTWKLK----DPDVNGIG 392
HA+ +D ++ W Q K+V GLP YG +W+ DV GI
Sbjct: 179 PVQHASYDDFVKDLKY------WNEQCRASKSKIVGGLPFYGYSWEESLQGAVDDVRGIR 232
Query: 393 APALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAG 435
+ G+ + I K G + + + +AG
Sbjct: 233 YSGILKHLGNEAADKDNIGKTYYNGRPTIANKCKFIKENDYAG 275
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 235 FINSTIEIARKYGFDGVDLDWE 256
F NS + R+YGFDGVD+D E
Sbjct: 100 FANSVYSVXREYGFDGVDIDLE 121
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 112/289 (38%), Gaps = 56/289 (19%)
Query: 221 VFSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFPAN--------DQDMSNLALLF 271
+FS++A + R F+ + +++ F +D+DWE+P + D +N A+L
Sbjct: 252 LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAILI 311
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN------KYMNWVSP 325
+Q +A+I+N + + ++ A I+A N + ++
Sbjct: 312 QQI-----TDAKISNLKGISIASSADPAK------------IDAANIPALMDAGVTGINL 354
Query: 326 MCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWI-----QAGVPAQKLVMGLPLYGRT 380
M +D+ + H + S++ + Y I + + V + + +G Y R
Sbjct: 355 MTYDFFTLGDGKLSHHTNIYRDPSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRN 414
Query: 381 WKLKDPDVNGIGAPALGVGPGDG----------VLTYNQIVKFNM-----EGTAA--VVF 423
K + AL D VL + I+ M EG +V
Sbjct: 415 AKNATITTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVH 474
Query: 424 DATPVA--YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D A +S A +I D S++ K ++ K KGLGG F W+ QD
Sbjct: 475 DKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQD 523
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 112/289 (38%), Gaps = 56/289 (19%)
Query: 221 VFSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFPAN--------DQDMSNLALLF 271
+FS++A + R F+ + +++ F +D+DWE+P + D +N A+L
Sbjct: 224 LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAILI 283
Query: 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN------KYMNWVSP 325
+Q +A+I+N + + ++ A I+A N + ++
Sbjct: 284 QQI-----TDAKISNLKGISIASSADPAK------------IDAANIPALMDAGVTGINL 326
Query: 326 MCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWI-----QAGVPAQKLVMGLPLYGRT 380
M +D+ + H + S++ + Y I + + V + + +G Y R
Sbjct: 327 MTYDFFTLGDGKLSHHTNIYRDPSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRN 386
Query: 381 WKLKDPDVNGIGAPALGVGPGDG----------VLTYNQIVKFNM-----EGTAA--VVF 423
K + AL D VL + I+ M EG +V
Sbjct: 387 AKNATITTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVH 446
Query: 424 DATPVA--YHSFAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470
D A +S A +I D S++ K ++ K KGLGG F W+ QD
Sbjct: 447 DKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQD 495
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 235 FINSTIEIARKYGFDGVDLDWE----FPANDQDMSN 266
FINS + KYGFDG+D+D E ND + N
Sbjct: 97 FINSIQSLIDKYGFDGIDIDLESGIYLNGNDTNFKN 132
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 235 FINSTIEIARKYGFDGVDLDWE----FPANDQDMSN 266
FINS + KYGFDG+D+D + ND + N
Sbjct: 97 FINSIQSLIDKYGFDGIDIDLQSGIYLNGNDTNFKN 132
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 235 FINSTIEIARKYGFDGVDLDWE----FPANDQDMSN 266
FINS + KYGFDG+D+D + ND + N
Sbjct: 97 FINSIQSLIDKYGFDGIDIDLQSGIYLNGNDTNFKN 132
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 123 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 159
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 154 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 190
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 405 LTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGY 441
LT+N + EG ++FD A+H + W+GY
Sbjct: 125 LTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 235 FINSTIEIARKYGFDGVDLD 254
FINS + KYGFDG+D+D
Sbjct: 97 FINSIQSLIDKYGFDGIDID 116
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 235 FINSTIEIARKYGFDGVDLDWE----FPANDQDMSN 266
FINS + KYGFDG+D+ E ND + N
Sbjct: 97 FINSIQSLIDKYGFDGIDIALESGIYLNGNDTNFKN 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,828,439
Number of Sequences: 62578
Number of extensions: 518228
Number of successful extensions: 1241
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 109
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)