Query 011487
Match_columns 484
No_of_seqs 244 out of 1572
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 1.3E-63 2.9E-68 499.4 33.7 294 143-475 3-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 1.6E-62 3.5E-67 505.5 36.1 327 145-483 1-362 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 1.4E-59 3.1E-64 489.1 36.4 326 145-483 2-413 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 4.2E-59 9.1E-64 475.0 33.1 314 145-470 2-334 (334)
5 cd02878 GH18_zymocin_alpha Zym 100.0 5.8E-59 1.3E-63 474.9 32.3 306 144-470 1-345 (345)
6 KOG2806 Chitinase [Carbohydrat 100.0 1.9E-58 4.1E-63 482.2 34.7 331 142-478 57-406 (432)
7 COG3325 ChiA Chitinase [Carboh 100.0 5.7E-59 1.2E-63 464.1 25.8 334 142-483 37-436 (441)
8 cd06548 GH18_chitinase The GH1 100.0 5E-58 1.1E-62 464.4 31.1 283 145-470 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 2.8E-54 6E-59 440.2 30.1 321 143-470 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 2.5E-53 5.4E-58 429.5 26.6 294 144-471 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 2.3E-49 4.9E-54 405.3 30.6 298 141-480 34-349 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 2.2E-49 4.8E-54 400.0 28.1 293 144-471 3-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 7.9E-46 1.7E-50 371.1 27.9 288 144-472 1-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 6.1E-46 1.3E-50 363.8 26.1 247 145-479 1-253 (253)
15 cd00598 GH18_chitinase-like Th 100.0 4.7E-36 1E-40 285.2 22.3 205 145-470 1-210 (210)
16 COG3858 Predicted glycosyl hyd 100.0 3.3E-33 7.3E-38 278.8 20.5 247 205-477 160-419 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 9.6E-32 2.1E-36 263.0 24.8 200 144-376 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 7E-32 1.5E-36 262.6 20.5 205 152-382 10-222 (253)
19 cd02871 GH18_chitinase_D-like 100.0 6E-31 1.3E-35 265.1 26.6 214 143-377 1-248 (312)
20 KOG2091 Predicted member of gl 99.9 2.5E-26 5.3E-31 219.8 18.0 297 142-470 78-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 1.2E-25 2.5E-30 220.7 18.4 239 144-482 2-253 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 1.1E-23 2.3E-28 208.1 22.0 200 145-377 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 1.3E-22 2.8E-27 201.7 17.8 150 163-333 24-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.9 3.8E-20 8.2E-25 172.7 18.3 219 141-377 24-267 (332)
25 KOG4701 Chitinase [Cell wall/m 99.4 4.5E-12 9.7E-17 124.9 18.2 202 142-377 26-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.6 4.2E-07 9.1E-12 92.5 12.8 162 194-382 50-216 (339)
27 PF03644 Glyco_hydro_85: Glyco 98.0 2.6E-05 5.6E-10 78.6 9.7 160 193-380 45-209 (311)
28 PF02638 DUF187: Glycosyl hydr 97.9 8.8E-05 1.9E-09 74.9 11.9 132 227-379 134-299 (311)
29 PF13200 DUF4015: Putative gly 97.6 0.003 6.5E-08 63.6 17.5 165 163-343 25-240 (316)
30 PF11340 DUF3142: Protein of u 97.4 0.0026 5.7E-08 58.4 11.6 116 228-378 22-138 (181)
31 KOG2331 Predicted glycosylhydr 96.7 0.019 4E-07 58.8 12.1 159 195-381 116-275 (526)
32 TIGR01370 cysRS possible cyste 96.1 0.21 4.6E-06 50.4 15.2 85 194-281 85-203 (315)
33 TIGR02402 trehalose_TreZ malto 92.9 0.7 1.5E-05 50.4 10.7 90 188-282 158-269 (542)
34 TIGR02104 pulA_typeI pullulana 92.6 1 2.3E-05 49.8 11.6 83 190-281 229-339 (605)
35 cd02930 DCR_FMN 2,4-dienoyl-Co 92.5 4.9 0.00011 41.4 15.7 63 190-255 77-158 (353)
36 cd04734 OYE_like_3_FMN Old yel 92.4 5.1 0.00011 41.1 15.7 89 165-256 47-163 (343)
37 COG1306 Uncharacterized conser 92.3 0.47 1E-05 46.8 7.2 87 236-332 198-300 (400)
38 PF14883 GHL13: Hypothetical g 91.9 8.6 0.00019 38.2 15.6 199 164-383 30-267 (294)
39 TIGR02103 pullul_strch alpha-1 91.7 1.1 2.3E-05 51.6 10.5 83 190-281 404-516 (898)
40 TIGR01515 branching_enzym alph 91.2 2.4 5.2E-05 47.1 12.5 92 188-281 204-339 (613)
41 PRK10785 maltodextrin glucosid 90.7 2.3 4.9E-05 47.1 11.6 92 188-281 224-363 (598)
42 KOG1924 RhoA GTPase effector D 90.5 1.6 3.5E-05 48.3 9.8 12 232-243 731-742 (1102)
43 cd02932 OYE_YqiM_FMN Old yello 90.3 15 0.00032 37.5 16.5 47 164-212 46-97 (336)
44 PF14871 GHL6: Hypothetical gl 89.9 1.1 2.4E-05 39.4 6.7 64 189-255 43-132 (132)
45 PRK12568 glycogen branching en 89.4 3.6 7.8E-05 46.3 11.8 93 188-282 317-453 (730)
46 PRK12313 glycogen branching en 89.2 4.1 8.9E-05 45.4 12.3 91 188-281 218-352 (633)
47 PRK14706 glycogen branching en 89.0 4.8 0.0001 44.9 12.5 92 188-281 215-348 (639)
48 PRK05402 glycogen branching en 89.0 3.9 8.4E-05 46.4 12.0 92 188-281 313-448 (726)
49 cd04733 OYE_like_2_FMN Old yel 88.7 14 0.0003 37.8 14.9 65 190-257 82-172 (338)
50 PLN02960 alpha-amylase 88.7 4.1 8.9E-05 46.5 11.6 91 188-281 464-601 (897)
51 TIGR02100 glgX_debranch glycog 87.5 2.7 5.9E-05 47.2 9.5 86 189-276 244-365 (688)
52 PF13199 Glyco_hydro_66: Glyco 87.4 2 4.4E-05 46.8 8.1 87 190-279 170-300 (559)
53 PLN02877 alpha-amylase/limit d 86.6 4.9 0.00011 46.6 10.8 83 191-275 467-580 (970)
54 TIGR02102 pullulan_Gpos pullul 85.8 4.6 9.9E-05 47.7 10.3 65 190-256 555-644 (1111)
55 PRK03705 glycogen debranching 85.3 4.5 9.8E-05 45.2 9.7 65 190-256 242-338 (658)
56 PF14488 DUF4434: Domain of un 85.0 18 0.0004 33.0 12.0 109 163-281 32-151 (166)
57 cd02810 DHOD_DHPD_FMN Dihydroo 84.7 7.4 0.00016 38.6 10.2 73 190-278 83-161 (289)
58 COG1649 Uncharacterized protei 84.3 1.5 3.3E-05 45.8 5.1 91 229-330 181-309 (418)
59 cd02931 ER_like_FMN Enoate red 84.0 21 0.00046 37.2 13.5 62 190-255 83-171 (382)
60 PLN03244 alpha-amylase; Provis 83.7 11 0.00024 42.6 11.5 65 188-254 439-531 (872)
61 TIGR02456 treS_nterm trehalose 82.8 11 0.00025 41.0 11.4 54 227-281 171-230 (539)
62 cd04735 OYE_like_4_FMN Old yel 82.5 32 0.00069 35.4 14.0 65 189-256 77-166 (353)
63 PLN02447 1,4-alpha-glucan-bran 82.1 13 0.00028 42.1 11.6 66 188-255 298-391 (758)
64 PRK14705 glycogen branching en 82.0 13 0.00028 44.4 11.9 92 188-281 813-948 (1224)
65 cd02803 OYE_like_FMN_family Ol 81.8 11 0.00023 38.2 10.2 47 164-212 46-97 (327)
66 cd06602 GH31_MGAM_SI_GAA This 81.5 18 0.00038 37.1 11.6 75 181-258 55-166 (339)
67 PRK09441 cytoplasmic alpha-amy 81.5 10 0.00022 40.7 10.3 46 228-280 207-252 (479)
68 cd02929 TMADH_HD_FMN Trimethyl 80.9 33 0.00071 35.6 13.5 91 164-257 51-173 (370)
69 PF07364 DUF1485: Protein of u 80.2 13 0.00027 37.4 9.7 148 191-378 46-198 (292)
70 COG4724 Endo-beta-N-acetylgluc 80.1 3.4 7.3E-05 42.4 5.5 82 194-277 131-218 (553)
71 PRK14582 pgaB outer membrane N 80.1 7.4 0.00016 43.5 8.7 138 228-382 439-614 (671)
72 cd06591 GH31_xylosidase_XylS X 80.0 8 0.00017 39.2 8.4 88 165-257 40-159 (319)
73 PRK13523 NADPH dehydrogenase N 79.8 61 0.0013 33.2 14.8 88 190-280 81-204 (337)
74 COG3867 Arabinogalactan endo-1 77.7 82 0.0018 31.6 15.3 56 200-259 112-178 (403)
75 TIGR02403 trehalose_treC alpha 76.8 29 0.00063 38.0 12.1 52 228-280 168-235 (543)
76 TIGR03849 arch_ComA phosphosul 75.8 61 0.0013 31.5 12.5 72 189-276 40-111 (237)
77 cd04747 OYE_like_5_FMN Old yel 75.7 84 0.0018 32.5 14.5 101 190-297 78-219 (361)
78 PRK10605 N-ethylmaleimide redu 75.0 88 0.0019 32.3 14.5 21 190-212 79-99 (362)
79 COG5309 Exo-beta-1,3-glucanase 74.9 89 0.0019 30.9 13.3 112 190-330 87-203 (305)
80 PF02057 Glyco_hydro_59: Glyco 74.7 8.7 0.00019 42.5 7.2 82 194-282 116-201 (669)
81 PHA03247 large tegument protei 73.3 20 0.00044 45.3 10.2 17 46-62 2707-2723(3151)
82 COG1902 NemA NADH:flavin oxido 73.2 49 0.0011 34.3 12.0 131 189-330 82-262 (363)
83 PF07462 MSP1_C: Merozoite sur 73.0 8.3 0.00018 41.3 6.3 10 234-243 398-407 (574)
84 cd04740 DHOD_1B_like Dihydroor 72.9 25 0.00054 35.0 9.7 59 204-278 88-153 (296)
85 PRK07259 dihydroorotate dehydr 72.2 24 0.00051 35.3 9.4 58 205-278 91-156 (301)
86 cd06600 GH31_MGAM-like This fa 72.1 49 0.0011 33.5 11.6 75 181-258 55-161 (317)
87 PF07476 MAAL_C: Methylasparta 71.2 25 0.00053 33.7 8.3 87 228-333 87-175 (248)
88 cd02940 DHPD_FMN Dihydropyrimi 70.9 33 0.00072 34.4 10.0 71 193-278 87-167 (299)
89 PLN02495 oxidoreductase, actin 70.9 45 0.00097 34.9 11.1 55 190-259 98-152 (385)
90 PRK14581 hmsF outer membrane N 70.5 51 0.0011 37.0 12.1 201 164-382 347-614 (672)
91 COG1891 Uncharacterized protei 68.7 47 0.001 30.6 9.3 171 227-460 5-182 (235)
92 PF00724 Oxidored_FMN: NADH:fl 68.6 72 0.0016 32.6 12.1 47 164-212 49-100 (341)
93 PRK05286 dihydroorotate dehydr 67.9 29 0.00063 35.6 9.0 66 204-279 136-206 (344)
94 PRK08318 dihydropyrimidine deh 67.4 37 0.00079 35.8 9.9 68 196-278 90-167 (420)
95 PRK10550 tRNA-dihydrouridine s 67.3 25 0.00055 35.5 8.3 70 205-298 62-142 (312)
96 PF14587 Glyco_hydr_30_2: O-Gl 67.1 41 0.00088 35.0 9.7 98 181-283 97-218 (384)
97 PF12138 Spherulin4: Spherulat 66.9 95 0.0021 30.4 12.0 78 188-279 51-133 (253)
98 TIGR00737 nifR3_yhdG putative 66.6 48 0.001 33.5 10.3 41 202-258 59-99 (319)
99 cd06592 GH31_glucosidase_KIAA1 66.5 29 0.00064 34.8 8.6 65 191-258 71-166 (303)
100 PRK07565 dihydroorotate dehydr 66.5 35 0.00076 34.7 9.3 73 189-278 86-164 (334)
101 cd06589 GH31 The enzymes of gl 66.0 15 0.00033 36.1 6.3 59 183-258 59-117 (265)
102 PF02065 Melibiase: Melibiase; 65.2 30 0.00066 36.2 8.6 96 190-297 104-235 (394)
103 PRK02506 dihydroorotate dehydr 64.5 36 0.00078 34.4 8.8 74 189-278 76-156 (310)
104 PF14885 GHL15: Hypothetical g 63.2 9.4 0.0002 30.4 3.4 44 213-256 32-76 (79)
105 PRK10933 trehalose-6-phosphate 62.9 55 0.0012 35.9 10.5 51 227-278 174-240 (551)
106 PLN02361 alpha-amylase 62.5 57 0.0012 34.3 10.1 80 188-277 74-195 (401)
107 cd04741 DHOD_1A_like Dihydroor 62.3 48 0.001 33.2 9.2 73 190-278 74-156 (294)
108 cd02801 DUS_like_FMN Dihydrour 61.4 38 0.00082 32.1 8.0 62 201-278 50-122 (231)
109 PF10566 Glyco_hydro_97: Glyco 61.2 41 0.00089 33.4 8.2 58 189-257 72-129 (273)
110 PF11593 Med3: Mediator comple 61.2 34 0.00073 35.1 7.6 6 50-55 109-114 (379)
111 KOG1924 RhoA GTPase effector D 60.6 74 0.0016 35.9 10.6 6 42-47 515-520 (1102)
112 PRK08255 salicylyl-CoA 5-hydro 59.2 53 0.0012 37.6 9.9 86 231-326 549-658 (765)
113 COG0429 Predicted hydrolase of 58.6 65 0.0014 32.9 9.1 63 205-279 74-146 (345)
114 COG0296 GlgB 1,4-alpha-glucan 57.9 41 0.00089 37.3 8.3 92 188-281 212-347 (628)
115 PF04914 DltD_C: DltD C-termin 57.6 43 0.00094 29.3 6.9 60 190-253 36-95 (130)
116 cd04739 DHOD_like Dihydroorota 56.7 78 0.0017 32.2 9.7 72 190-278 85-162 (325)
117 PRK14510 putative bifunctional 56.5 56 0.0012 39.5 9.8 87 188-281 245-365 (1221)
118 TIGR02810 agaZ_gatZ D-tagatose 56.1 1.8E+02 0.0039 30.6 12.1 249 175-455 49-368 (420)
119 PF02055 Glyco_hydro_30: O-Gly 55.8 25 0.00054 38.1 6.1 87 193-281 156-268 (496)
120 PRK11907 bifunctional 2',3'-cy 55.7 93 0.002 35.9 10.9 61 190-253 145-207 (814)
121 KOG0566 Inositol-1,4,5-triphos 55.4 47 0.001 38.2 8.2 34 19-56 951-984 (1080)
122 COG1080 PtsA Phosphoenolpyruva 55.2 1.4E+02 0.0031 32.6 11.6 165 188-363 311-492 (574)
123 smart00633 Glyco_10 Glycosyl h 55.0 95 0.0021 30.1 9.7 74 192-275 105-179 (254)
124 PF00834 Ribul_P_3_epim: Ribul 54.7 46 0.00099 31.4 7.1 66 239-329 72-137 (201)
125 TIGR01036 pyrD_sub2 dihydrooro 54.4 70 0.0015 32.7 9.0 76 194-279 123-203 (335)
126 PRK03995 hypothetical protein; 54.4 30 0.00066 34.2 6.0 69 204-274 179-260 (267)
127 KOG0162 Myosin class I heavy c 54.1 1.1E+02 0.0024 34.4 10.5 14 155-168 1063-1076(1106)
128 cd04738 DHOD_2_like Dihydrooro 53.1 99 0.0021 31.4 9.8 66 204-279 127-197 (327)
129 PF00150 Cellulase: Cellulase 53.1 1.2E+02 0.0025 29.3 10.1 88 190-282 62-163 (281)
130 PF01120 Alpha_L_fucos: Alpha- 52.8 83 0.0018 32.3 9.3 83 189-276 137-234 (346)
131 cd06522 GH25_AtlA-like AtlA is 52.2 1.8E+02 0.004 26.9 10.8 76 189-276 41-120 (192)
132 cd06595 GH31_xylosidase_XylS-l 52.0 70 0.0015 31.9 8.4 74 181-256 65-158 (292)
133 PRK15052 D-tagatose-1,6-bispho 51.9 3.1E+02 0.0067 28.9 13.0 248 175-455 50-367 (421)
134 smart00812 Alpha_L_fucos Alpha 51.2 56 0.0012 34.1 7.8 85 189-276 127-221 (384)
135 COG1908 FrhD Coenzyme F420-red 51.2 89 0.0019 27.0 7.4 73 205-282 53-125 (132)
136 PF05691 Raffinose_syn: Raffin 51.1 72 0.0016 36.1 8.8 69 190-258 288-392 (747)
137 PF02449 Glyco_hydro_42: Beta- 50.9 67 0.0015 33.1 8.4 107 164-278 23-160 (374)
138 PRK11815 tRNA-dihydrouridine s 50.6 51 0.0011 33.6 7.3 60 203-278 62-132 (333)
139 TIGR00742 yjbN tRNA dihydrouri 50.0 61 0.0013 32.9 7.6 60 203-278 52-122 (318)
140 KOG0917 Uncharacterized conser 49.5 1.4E+02 0.0031 29.4 9.4 27 48-76 186-212 (338)
141 PRK15458 tagatose 6-phosphate 49.4 2.6E+02 0.0056 29.5 12.0 242 185-455 60-372 (426)
142 PLN02982 galactinol-raffinose 48.5 94 0.002 35.4 9.1 68 190-257 390-492 (865)
143 PF07582 AP_endonuc_2_N: AP en 48.1 38 0.00083 25.0 4.2 42 237-279 3-45 (55)
144 PLN00196 alpha-amylase; Provis 48.0 74 0.0016 33.8 8.1 24 187-212 89-112 (428)
145 PRK13575 3-dehydroquinate dehy 47.6 2.7E+02 0.0059 26.9 15.0 56 190-257 47-107 (238)
146 COG1523 PulA Type II secretory 47.4 65 0.0014 36.3 7.9 66 190-257 265-362 (697)
147 cd06598 GH31_transferase_CtsZ 47.3 60 0.0013 32.8 7.2 73 181-257 61-164 (317)
148 PLN02711 Probable galactinol-- 47.1 70 0.0015 36.1 7.9 90 191-280 306-433 (777)
149 cd06599 GH31_glycosidase_Aec37 47.0 51 0.0011 33.3 6.5 65 190-257 73-168 (317)
150 PRK13042 superantigen-like pro 46.7 35 0.00077 33.7 5.0 15 15-29 2-16 (291)
151 PF01299 Lamp: Lysosome-associ 46.2 40 0.00086 34.0 5.6 15 244-258 186-200 (306)
152 cd01827 sialate_O-acetylestera 45.8 98 0.0021 27.9 7.8 63 189-253 92-154 (188)
153 PRK14866 hypothetical protein; 45.2 53 0.0012 34.9 6.4 69 204-274 183-263 (451)
154 PF05990 DUF900: Alpha/beta hy 44.8 1.5E+02 0.0034 28.4 9.3 67 197-277 10-89 (233)
155 PF07745 Glyco_hydro_53: Glyco 44.2 67 0.0015 32.8 6.9 85 190-280 58-165 (332)
156 KOG1552 Predicted alpha/beta h 44.2 33 0.00071 33.6 4.4 50 322-380 88-138 (258)
157 PF08869 XisI: XisI protein; 42.4 14 0.0003 31.4 1.4 20 356-375 79-98 (111)
158 PRK09505 malS alpha-amylase; R 42.3 62 0.0013 36.5 6.8 30 227-256 434-463 (683)
159 cd06594 GH31_glucosidase_YihQ 41.5 90 0.0019 31.6 7.3 65 190-256 71-165 (317)
160 PF10354 DUF2431: Domain of un 41.4 1.5E+02 0.0033 26.9 8.2 102 194-331 44-154 (166)
161 COG1941 FrhG Coenzyme F420-red 41.1 73 0.0016 30.8 6.1 103 167-274 36-150 (247)
162 PF12876 Cellulase-like: Sugar 41.0 67 0.0014 25.7 5.2 73 242-328 1-88 (88)
163 KOG1029 Endocytic adaptor prot 40.1 79 0.0017 35.7 6.8 39 58-96 100-139 (1118)
164 cd06597 GH31_transferase_CtsY 40.0 78 0.0017 32.4 6.7 30 226-255 156-185 (340)
165 TIGR01037 pyrD_sub1_fam dihydr 39.6 1.6E+02 0.0034 29.3 8.8 58 205-278 90-156 (300)
166 PF07745 Glyco_hydro_53: Glyco 39.5 1.9E+02 0.0042 29.5 9.3 66 196-279 160-229 (332)
167 cd02933 OYE_like_FMN Old yello 39.4 4.1E+02 0.0088 27.1 11.8 21 190-212 77-97 (338)
168 PLN02411 12-oxophytodienoate r 39.4 1.3E+02 0.0028 31.5 8.3 21 190-212 87-107 (391)
169 COG3410 Uncharacterized conser 39.3 81 0.0018 28.8 5.7 45 226-273 144-188 (191)
170 cd06593 GH31_xylosidase_YicI Y 38.7 1.2E+02 0.0026 30.3 7.8 73 181-256 57-158 (308)
171 PLN02784 alpha-amylase 38.6 1.2E+02 0.0027 34.9 8.3 67 188-256 566-675 (894)
172 PRK08005 epimerase; Validated 37.8 99 0.0021 29.4 6.5 65 240-329 74-138 (210)
173 PF14606 Lipase_GDSL_3: GDSL-l 37.8 1.7E+02 0.0037 27.1 7.9 63 189-253 77-141 (178)
174 COG2342 Predicted extracellula 37.4 1.1E+02 0.0023 30.5 6.6 49 233-281 125-183 (300)
175 TIGR03234 OH-pyruv-isom hydrox 37.1 48 0.001 32.0 4.4 42 236-294 16-57 (254)
176 PF00128 Alpha-amylase: Alpha 37.0 60 0.0013 31.6 5.2 47 227-281 142-188 (316)
177 cd06601 GH31_lyase_GLase GLase 36.9 1.5E+02 0.0032 30.3 8.1 74 181-258 55-134 (332)
178 KOG3111 D-ribulose-5-phosphate 36.5 1.6E+02 0.0034 27.8 7.3 65 240-329 80-144 (224)
179 cd01838 Isoamyl_acetate_hydrol 35.7 1.5E+02 0.0032 26.7 7.3 64 189-253 91-162 (199)
180 cd06604 GH31_glucosidase_II_Ma 35.6 1.4E+02 0.0031 30.3 7.8 73 181-257 55-159 (339)
181 PF04551 GcpE: GcpE protein; 35.6 3E+02 0.0064 28.5 9.8 103 171-279 96-201 (359)
182 PRK01060 endonuclease IV; Prov 35.3 52 0.0011 32.2 4.4 45 236-280 14-58 (281)
183 cd06523 GH25_PlyB-like PlyB is 35.2 2.6E+02 0.0057 25.4 8.8 76 188-276 37-112 (177)
184 PF01207 Dus: Dihydrouridine s 34.3 74 0.0016 32.1 5.4 66 198-279 46-122 (309)
185 cd00019 AP2Ec AP endonuclease 34.2 64 0.0014 31.6 4.9 44 237-280 13-56 (279)
186 TIGR00542 hxl6Piso_put hexulos 33.6 62 0.0013 31.7 4.7 44 237-280 19-63 (279)
187 cd01841 NnaC_like NnaC (CMP-Ne 33.2 2.1E+02 0.0045 25.3 7.8 64 189-255 74-138 (174)
188 PF06415 iPGM_N: BPG-independe 33.0 3.5E+02 0.0076 26.0 9.4 90 190-298 14-105 (223)
189 COG0050 TufB GTPases - transla 32.8 1.4E+02 0.0031 30.1 6.8 56 225-280 140-198 (394)
190 KOG3035 Isoamyl acetate-hydrol 32.7 2.4E+02 0.0051 27.2 7.9 64 189-253 99-171 (245)
191 KOG0199 ACK and related non-re 32.5 1.6E+02 0.0034 33.4 7.6 38 51-88 689-726 (1039)
192 PF02896 PEP-utilizers_C: PEP- 32.5 2E+02 0.0043 28.9 8.0 90 232-330 119-208 (293)
193 PRK10128 2-keto-3-deoxy-L-rham 32.1 69 0.0015 31.7 4.6 36 239-276 31-66 (267)
194 PRK08091 ribulose-phosphate 3- 32.0 1.5E+02 0.0033 28.5 6.9 65 240-329 84-150 (228)
195 PRK10558 alpha-dehydro-beta-de 32.0 66 0.0014 31.5 4.5 36 239-276 32-67 (256)
196 PF02679 ComA: (2R)-phospho-3- 31.4 52 0.0011 32.1 3.5 148 189-375 53-205 (244)
197 PF02581 TMP-TENI: Thiamine mo 31.2 2.4E+02 0.0052 25.7 7.9 57 241-327 66-123 (180)
198 cd01828 sialate_O-acetylestera 31.0 2.6E+02 0.0056 24.6 8.0 61 189-254 71-131 (169)
199 PF07174 FAP: Fibronectin-atta 30.5 4.3E+02 0.0093 26.2 9.4 12 165-176 132-143 (297)
200 TIGR01839 PHA_synth_II poly(R) 30.3 81 0.0018 34.6 5.1 50 237-286 237-286 (560)
201 KOG3671 Actin regulatory prote 30.0 3.3E+02 0.0072 29.3 9.2 7 194-200 497-503 (569)
202 PRK14950 DNA polymerase III su 29.5 2.4E+02 0.0052 31.2 8.8 21 190-210 469-489 (585)
203 PF04414 tRNA_deacylase: D-ami 29.3 67 0.0015 30.7 3.8 66 207-274 131-207 (213)
204 PRK08446 coproporphyrinogen II 29.2 1.9E+02 0.0041 29.6 7.5 76 194-274 99-174 (350)
205 KOG4307 RNA binding protein RB 29.1 1.7E+02 0.0037 32.7 7.2 39 58-96 192-233 (944)
206 TIGR00736 nifR3_rel_arch TIM-b 28.2 2.7E+02 0.0059 26.9 7.9 63 193-275 58-131 (231)
207 cd01831 Endoglucanase_E_like E 28.2 4E+02 0.0086 23.5 8.7 49 189-247 80-128 (169)
208 KOG3753 Circadian clock protei 28.1 5.3E+02 0.012 29.9 10.8 13 145-157 838-850 (1114)
209 TIGR03239 GarL 2-dehydro-3-deo 28.0 89 0.0019 30.5 4.6 36 239-276 25-60 (249)
210 cd06412 GH25_CH-type CH-type ( 27.9 4.2E+02 0.0092 24.5 9.1 17 189-207 38-54 (199)
211 PLN02217 probable pectinestera 27.7 1.5E+02 0.0032 33.4 6.7 16 67-82 560-575 (670)
212 PRK08745 ribulose-phosphate 3- 27.7 1.7E+02 0.0038 28.0 6.4 65 240-329 78-142 (223)
213 PF05763 DUF835: Protein of un 27.6 1.1E+02 0.0023 27.1 4.5 54 226-279 54-108 (136)
214 PF04468 PSP1: PSP1 C-terminal 27.3 1.2E+02 0.0025 24.6 4.4 57 223-279 15-80 (88)
215 PLN02433 uroporphyrinogen deca 27.2 1.7E+02 0.0036 29.9 6.7 45 192-257 219-263 (345)
216 PLN02334 ribulose-phosphate 3- 27.1 2.6E+02 0.0057 26.5 7.7 68 239-329 80-149 (229)
217 COG3623 SgaU Putative L-xylulo 26.9 3.2E+02 0.0069 26.7 7.7 107 176-298 40-155 (287)
218 PRK09722 allulose-6-phosphate 26.9 2E+02 0.0044 27.7 6.8 65 241-329 76-140 (229)
219 PRK06756 flavodoxin; Provision 26.8 4.2E+02 0.0092 23.0 9.8 44 233-278 100-147 (148)
220 TIGR02631 xylA_Arthro xylose i 26.8 1.8E+02 0.0038 30.4 6.8 61 214-280 17-79 (382)
221 PRK11061 fused phosphoenolpyru 26.7 4.2E+02 0.0092 30.3 10.3 161 189-362 477-656 (748)
222 PRK08883 ribulose-phosphate 3- 26.6 1.9E+02 0.0042 27.6 6.5 65 240-329 74-138 (220)
223 PRK13347 coproporphyrinogen II 26.5 2.5E+02 0.0054 29.9 8.1 77 194-275 153-229 (453)
224 cd01833 XynB_like SGNH_hydrola 26.4 3E+02 0.0065 23.8 7.5 52 189-247 63-114 (157)
225 PRK05799 coproporphyrinogen II 26.3 2.5E+02 0.0055 28.8 7.9 77 194-275 100-176 (374)
226 cd06414 GH25_LytC-like The Lyt 26.3 4.4E+02 0.0095 24.2 8.8 43 238-280 78-124 (191)
227 PF07287 DUF1446: Protein of u 26.2 2E+02 0.0042 29.9 6.9 50 190-257 58-107 (362)
228 COG1501 Alpha-glucosidases, fa 26.2 2.6E+02 0.0056 32.2 8.4 247 170-468 222-508 (772)
229 cd02911 arch_FMN Archeal FMN-b 26.1 3.7E+02 0.008 25.8 8.5 63 195-276 64-137 (233)
230 PF09839 DUF2066: Uncharacteri 26.1 2E+02 0.0044 27.6 6.7 76 169-251 103-179 (234)
231 PF03328 HpcH_HpaI: HpcH/HpaI 26.0 2.3E+02 0.005 26.7 7.0 37 239-275 13-53 (221)
232 PRK06703 flavodoxin; Provision 25.9 4.4E+02 0.0096 22.9 9.2 77 190-279 66-148 (151)
233 PRK00071 nadD nicotinic acid m 25.7 4.3E+02 0.0092 24.6 8.7 113 193-326 21-134 (203)
234 PRK00115 hemE uroporphyrinogen 25.6 1.7E+02 0.0038 29.8 6.5 55 192-279 226-280 (346)
235 PRK13042 superantigen-like pro 25.6 1.4E+02 0.0029 29.7 5.2 21 75-95 43-63 (291)
236 KOG1643 Triosephosphate isomer 25.4 5.1E+02 0.011 24.7 8.6 47 204-257 118-165 (247)
237 TIGR01163 rpe ribulose-phospha 25.3 2.5E+02 0.0055 25.9 7.1 65 240-329 72-136 (210)
238 PF07592 DDE_Tnp_ISAZ013: Rhod 25.2 2.8E+02 0.006 28.1 7.5 74 166-249 135-216 (311)
239 cd07321 Extradiol_Dioxygenase_ 25.2 80 0.0017 24.9 3.0 30 220-249 7-36 (77)
240 PRK00694 4-hydroxy-3-methylbut 25.0 5.5E+02 0.012 28.3 10.1 84 190-279 145-228 (606)
241 TIGR00539 hemN_rel putative ox 24.9 2.4E+02 0.0052 28.9 7.4 77 194-275 101-177 (360)
242 PRK11572 copper homeostasis pr 24.8 2.7E+02 0.0059 27.2 7.2 45 228-273 68-112 (248)
243 PRK09989 hypothetical protein; 24.5 1.5E+02 0.0033 28.6 5.6 34 237-280 18-51 (258)
244 PRK13210 putative L-xylulose 5 24.4 1.2E+02 0.0025 29.6 4.8 52 236-294 18-70 (284)
245 PRK02048 4-hydroxy-3-methylbut 24.4 5.8E+02 0.013 28.3 10.2 85 190-280 141-225 (611)
246 PLN02925 4-hydroxy-3-methylbut 24.0 5.8E+02 0.013 28.9 10.2 85 190-280 210-294 (733)
247 cd04724 Tryptophan_synthase_al 23.8 5.4E+02 0.012 24.7 9.2 66 239-329 96-162 (242)
248 PRK10426 alpha-glucosidase; Pr 23.5 2.6E+02 0.0057 31.3 7.7 64 190-255 269-361 (635)
249 PRK13575 3-dehydroquinate dehy 23.4 6.8E+02 0.015 24.2 11.5 52 191-256 113-164 (238)
250 cd07355 HN_L-delphilin-R2_like 23.2 90 0.0019 24.7 2.8 48 227-274 16-63 (80)
251 cd07944 DRE_TIM_HOA_like 4-hyd 23.1 6.9E+02 0.015 24.4 10.0 110 189-329 108-218 (266)
252 cd04501 SGNH_hydrolase_like_4 23.0 4.2E+02 0.0092 23.5 8.0 64 189-254 82-145 (183)
253 PRK05904 coproporphyrinogen II 23.0 3.4E+02 0.0074 27.8 8.0 76 194-274 104-179 (353)
254 PRK05568 flavodoxin; Provision 22.9 4.8E+02 0.01 22.3 8.1 67 191-274 68-139 (142)
255 PRK13660 hypothetical protein; 22.8 3.1E+02 0.0068 25.5 6.9 84 232-330 28-112 (182)
256 COG5309 Exo-beta-1,3-glucanase 22.6 3.2E+02 0.007 27.1 7.1 58 196-253 221-279 (305)
257 TIGR01290 nifB nitrogenase cof 22.5 6E+02 0.013 27.0 10.0 19 240-258 126-144 (442)
258 TIGR01093 aroD 3-dehydroquinat 22.5 6.7E+02 0.015 23.8 14.9 46 368-413 181-227 (228)
259 PRK14950 DNA polymerase III su 22.4 3.5E+02 0.0077 29.9 8.5 10 248-257 573-582 (585)
260 TIGR01233 lacG 6-phospho-beta- 22.1 2.4E+02 0.0053 30.2 6.9 80 168-253 72-153 (467)
261 PRK13335 superantigen-like pro 22.0 1.9E+02 0.0042 29.3 5.6 10 312-321 335-344 (356)
262 PHA03378 EBNA-3B; Provisional 21.9 3.9E+02 0.0085 30.0 8.2 7 458-464 973-979 (991)
263 KOG4152 Host cell transcriptio 21.9 1.6E+02 0.0035 31.8 5.2 32 50-82 403-434 (830)
264 cd00229 SGNH_hydrolase SGNH_hy 21.8 4.2E+02 0.0092 22.3 7.6 90 160-255 61-155 (187)
265 cd01825 SGNH_hydrolase_peri1 S 21.6 1.9E+02 0.0042 25.8 5.4 65 189-254 80-144 (189)
266 COG5185 HEC1 Protein involved 21.6 84 0.0018 33.4 3.1 53 225-279 99-151 (622)
267 TIGR02311 HpaI 2,4-dihydroxyhe 21.5 1.5E+02 0.0032 28.9 4.7 34 239-274 25-58 (249)
268 TIGR01093 aroD 3-dehydroquinat 21.5 7E+02 0.015 23.6 10.3 69 191-274 106-174 (228)
269 PRK02412 aroD 3-dehydroquinate 21.4 7.6E+02 0.016 24.0 10.7 70 190-274 122-191 (253)
270 PF08885 GSCFA: GSCFA family; 21.3 1E+02 0.0022 30.2 3.6 24 190-213 152-175 (251)
271 PF06745 KaiC: KaiC; InterPro 21.3 2.8E+02 0.006 26.0 6.6 90 230-332 98-189 (226)
272 PRK06294 coproporphyrinogen II 21.2 3.7E+02 0.008 27.7 7.9 76 194-274 104-179 (370)
273 PF00009 GTP_EFTU: Elongation 21.1 3.3E+02 0.0072 24.6 6.9 76 190-278 109-186 (188)
274 cd00599 GH25_muramidase Endo-N 21.1 4.7E+02 0.01 23.6 7.9 80 188-281 36-116 (186)
275 cd06415 GH25_Cpl1-like Cpl-1 l 20.9 2.8E+02 0.0061 25.7 6.4 78 190-279 38-118 (196)
276 PF00331 Glyco_hydro_10: Glyco 20.9 4.5E+02 0.0098 26.5 8.3 69 193-274 159-229 (320)
277 cd04722 TIM_phosphate_binding 20.8 5.8E+02 0.013 22.4 10.6 36 240-278 77-112 (200)
278 COG3589 Uncharacterized conser 20.8 2E+02 0.0043 29.4 5.5 55 190-259 49-103 (360)
279 TIGR00161 conserved hypothetic 20.8 7.6E+02 0.016 23.8 9.5 81 193-275 97-194 (238)
280 PRK15014 6-phospho-beta-glucos 20.8 3.2E+02 0.0069 29.5 7.5 78 167-247 87-167 (477)
281 KOG3671 Actin regulatory prote 20.6 6.2E+02 0.013 27.4 9.1 11 230-240 493-503 (569)
282 PRK05434 phosphoglyceromutase; 20.5 7.4E+02 0.016 27.0 10.2 78 190-281 96-175 (507)
283 PRK10658 putative alpha-glucos 20.4 3.3E+02 0.0071 30.7 7.7 88 165-256 299-417 (665)
284 cd01836 FeeA_FeeB_like SGNH_hy 20.4 3.8E+02 0.0082 24.0 7.1 63 189-253 90-157 (191)
285 cd00717 URO-D Uroporphyrinogen 20.3 2.7E+02 0.0058 28.1 6.6 44 192-256 217-260 (335)
286 PRK05628 coproporphyrinogen II 20.2 4.2E+02 0.0092 27.2 8.1 76 194-274 109-184 (375)
287 PLN02217 probable pectinestera 20.2 2.9E+02 0.0063 31.1 7.1 9 65-73 563-571 (670)
288 cd01832 SGNH_hydrolase_like_1 20.2 4.1E+02 0.0089 23.5 7.3 85 163-253 66-151 (185)
289 PF14307 Glyco_tran_WbsX: Glyc 20.1 1.8E+02 0.0038 29.8 5.2 35 442-477 55-89 (345)
290 PF04055 Radical_SAM: Radical 20.1 3E+02 0.0066 23.4 6.2 22 237-258 90-111 (166)
291 PRK05581 ribulose-phosphate 3- 20.0 4.6E+02 0.0099 24.3 7.8 64 241-329 78-141 (220)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.3e-63 Score=499.44 Aligned_cols=294 Identities=53% Similarity=0.987 Sum_probs=264.8
Q ss_pred eEEEEEecCCC-CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchh
Q 011487 143 GIKAAYWPSFN-DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNV 221 (484)
Q Consensus 143 ~i~~gY~~~~~-~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~ 221 (484)
.+++|||++|. .+.+++|+.++||||+|+|+.++++++.+...+.....+.++++.+|++++++|+|+|||||+.++..
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~ 82 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSSA 82 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 57899999877 89999999999999999999999888788877656667888888999999999999999999876789
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccccc
Q 011487 222 FSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASR 301 (484)
Q Consensus 222 f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~ 301 (484)
|+.++++++.|++||+++++++++|||||||||||+|...+++++|+.||++||++|+++++.+++++++|+++++....
T Consensus 83 fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~~ 162 (299)
T cd02879 83 FAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPI 162 (299)
T ss_pred hhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccchh
Confidence 99999999999999999999999999999999999998788999999999999999998877777778999999986544
Q ss_pred ccccCCCCCcChhhhhccCceEEeeeccCCCCCCC-CCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccceee
Q 011487 302 FTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWEN-FTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRT 380 (484)
Q Consensus 302 ~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~-~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~ 380 (484)
..+......||+++|.++|||||||+|||||.|.. .+++++|||......+++.+|+.|++.|+|++||+||||||||.
T Consensus 163 ~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~ 242 (299)
T cd02879 163 LFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYGRA 242 (299)
T ss_pred hccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccccc
Confidence 31111246789999999999999999999999984 57899999977667899999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeEEEeCCEEEEECCHHHHHHHHHHHHHCCCc
Q 011487 381 WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLG 460 (484)
Q Consensus 381 ~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~~~~isydd~~Sl~~K~~~ak~~gLg 460 (484)
|++ ||+.+.++|.|++++||+|||++|+++|++||+++|||
T Consensus 243 ~~~---------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~lg 283 (299)
T cd02879 243 WTL---------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLL 283 (299)
T ss_pred ccc---------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhCCCC
Confidence 952 78888899999999999999999999999999999999
Q ss_pred EEEEEecCCCCcchH
Q 011487 461 GYFFWAIGQDKDWTL 475 (484)
Q Consensus 461 Gv~iW~l~~DD~~~l 475 (484)
|+|+|++++||+..|
T Consensus 284 Gv~~W~l~~Dd~~~~ 298 (299)
T cd02879 284 GYFAWAVGYDDNNWL 298 (299)
T ss_pred eEEEEEeecCCcccc
Confidence 999999999987654
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.6e-62 Score=505.46 Aligned_cols=327 Identities=38% Similarity=0.687 Sum_probs=285.1
Q ss_pred EEEEecCCC-------CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCc-C---hHHHHHHHHHHHhhCCCcEEEEEEC
Q 011487 145 KAAYWPSFN-------DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLL-D---HAKLLELVGTLRVQNSHIKILLSIG 213 (484)
Q Consensus 145 ~~gY~~~~~-------~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~-~---~~~~~~~i~~lk~~n~~~KvllSIG 213 (484)
++|||++|. .|.+++|+.++||||+|+|+.++++| ++...+. . ...+.++ ..+|++||++||++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~-~~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERF-NALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHH-HHHHhhCCCceEEEEEc
Confidence 478998644 46788999999999999999999876 4444332 2 2444555 58899999999999999
Q ss_pred CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC----hhhHHHHHHHHHHHHHHhHHhhhhcCCCC
Q 011487 214 GGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSP 289 (484)
Q Consensus 214 G~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~----~~~~~~~~~flk~Lr~~l~~~~~~~~~~~ 289 (484)
||..+...|+.++++++.|++||++|++++++|||||||||||+|.. .+++++|..||++||++|++.+ ++
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~ 153 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PR 153 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cC
Confidence 99875678999999999999999999999999999999999999864 5789999999999999998742 47
Q ss_pred eEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCC------CccHHHHHHHHHHc
Q 011487 290 LLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRS------NISTSYGIGSWIQA 363 (484)
Q Consensus 290 ~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~------~~~~~~~v~~~~~~ 363 (484)
++|+++++..... ....||+++|.+++|+|+||+||+|+.|+..+|+++||+.... ..+++.+|++|++.
T Consensus 154 ~~ls~av~~~~~~----~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~ 229 (362)
T cd02872 154 LLLTAAVSAGKET----IDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSK 229 (362)
T ss_pred eEEEEEecCChHH----HhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHc
Confidence 8999999876543 3467899999999999999999999999889999999986432 46899999999999
Q ss_pred CCCCCCEeecCccceeeeeecCCCCCCCCCCcCCCCCC------CcccchHHHHHHhhcCCceEEEcCCCceeEEEeCCE
Q 011487 364 GVPAQKLVMGLPLYGRTWKLKDPDVNGIGAPALGVGPG------DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDS 437 (484)
Q Consensus 364 Gvp~~KlvLGlp~YG~~~~~~~~~~~~~~~~~~g~~~~------~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~~~ 437 (484)
|+|++||+||||+|||.|++.+..++++++++.|.+.. .|.++|.|||+.+ ++++...||+.++++|.|++++
T Consensus 230 gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 230 GAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECCE
Confidence 99999999999999999999988888888888765421 6889999999988 7899999999999999999999
Q ss_pred EEEECCHHHHHHHHHHHHHCCCcEEEEEecCCCCc--------chHHHHHHHhc
Q 011487 438 WIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKD--------WTLSKQASIAW 483 (484)
Q Consensus 438 ~isydd~~Sl~~K~~~ak~~gLgGv~iW~l~~DD~--------~~ll~a~~~~~ 483 (484)
||+|||++|++.|++||+++||||+|+|+|++||. ..|+++|++++
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 99999999999999999999999999999999983 55889888764
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.4e-59 Score=489.11 Aligned_cols=326 Identities=25% Similarity=0.481 Sum_probs=265.3
Q ss_pred EEEEecCCC-------CCCCCCCCCCC--ccEEEEeeeeeeCCCCEEEEcCcCh----HHHHHHHHHHHhhCCCcEEEEE
Q 011487 145 KAAYWPSFN-------DFPASSIDTSY--FTHIYYAFLLPEPKTFKLNVTLLDH----AKLLELVGTLRVQNSHIKILLS 211 (484)
Q Consensus 145 ~~gY~~~~~-------~~~~~~i~~~~--~ThIi~af~~i~~~gg~l~~~~~~~----~~~~~~i~~lk~~n~~~KvllS 211 (484)
++|||.+|. .+.+++|+... ||||+|+|+.++++++.+...+... ..+.++ ..+|++||++|||+|
T Consensus 2 vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~lk~~~p~lKvllS 80 (413)
T cd02873 2 LVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAI-TSLKRKYPHLKVLLS 80 (413)
T ss_pred EEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHH-HHHHhhCCCCeEEEe
Confidence 589998543 46688999754 9999999999999887776644321 345554 578999999999999
Q ss_pred ECCCCCC-----chhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC--------------------------
Q 011487 212 IGGGGSD-----PNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-------------------------- 260 (484)
Q Consensus 212 IGG~~~~-----~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-------------------------- 260 (484)
||||... +..|+.++++++.|++||++++++|++|+|||||||||+|+.
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 9999753 457999999999999999999999999999999999999852
Q ss_pred ----hhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCC
Q 011487 261 ----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWEN 336 (484)
Q Consensus 261 ----~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~ 336 (484)
.+++++|+.||++||++|++ .+++|++++++.... ...||+++|.++|||||||+|||||.|..
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~-------~~~~ls~av~~~~~~-----~~~~d~~~l~~~vD~inlMtYD~~g~~~~ 228 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRP-------DGLLLTLTVLPHVNS-----TWYFDVPAIANNVDFVNLATFDFLTPERN 228 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcc-------cCcEEEEEecCCchh-----ccccCHHHHhhcCCEEEEEEecccCCCCC
Confidence 45789999999999999975 457899988643222 34589999999999999999999998863
Q ss_pred --CCCCCCccCCCC---CCccHHHHHHHHHHcCCCCCCEeecCccceeeeeecCCC-CCCCC--CCcCCCCC-----C-C
Q 011487 337 --FTGLHAALNDPR---SNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPD-VNGIG--APALGVGP-----G-D 402 (484)
Q Consensus 337 --~~g~~spl~~~~---~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~~~~~~-~~~~~--~~~~g~~~-----~-~ 402 (484)
.+++++||+... ...+++.+|+.|++.|+|++||+||||||||.|++.... +.+.. +++.|.+. . .
T Consensus 229 ~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~ 308 (413)
T cd02873 229 PEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTP 308 (413)
T ss_pred CCccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCC
Confidence 689999998543 256899999999999999999999999999999987643 22211 33333321 1 6
Q ss_pred cccchHHHHHHhhcC--------CceEEEcCCCc-eeEEEeC-------CEEEEECCHHHHHHHHHHHHHCCCcEEEEEe
Q 011487 403 GVLTYNQIVKFNMEG--------TAAVVFDATPV-AYHSFAG-------DSWIGYDDVLSIKLKVQFAKSKGLGGYFFWA 466 (484)
Q Consensus 403 g~~~y~ei~~~l~~~--------g~~~~~D~~s~-~~y~y~~-------~~~isydd~~Sl~~K~~~ak~~gLgGv~iW~ 466 (484)
|.++|.|||+.+.+. .+...||++.. .+|+|.. ++||+|||++|++.|++||+++||||+|+|+
T Consensus 309 g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~ 388 (413)
T cd02873 309 GLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFD 388 (413)
T ss_pred ccccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 789999999987642 24567888776 5888842 4599999999999999999999999999999
Q ss_pred cCCCCc--------chHHHHHHHhc
Q 011487 467 IGQDKD--------WTLSKQASIAW 483 (484)
Q Consensus 467 l~~DD~--------~~ll~a~~~~~ 483 (484)
+++||. ..|+++|++.+
T Consensus 389 l~~DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 389 LSLDDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred eecCcCCCCcCCCCChHHHHHHhhC
Confidence 999984 56888887754
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=4.2e-59 Score=475.01 Aligned_cols=314 Identities=38% Similarity=0.689 Sum_probs=274.2
Q ss_pred EEEEecCCCC----CCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChH--HHHHHHHHHHhhCCCcEEEEEECCCCCC
Q 011487 145 KAAYWPSFND----FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHA--KLLELVGTLRVQNSHIKILLSIGGGGSD 218 (484)
Q Consensus 145 ~~gY~~~~~~----~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~--~~~~~i~~lk~~n~~~KvllSIGG~~~~ 218 (484)
++|||.+|.. +.+++++.++||||+|+|+.++++| ++.+.+.... .+.++ ..+|+++|++|||++||||..
T Consensus 2 ~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~l~~~~~~~kvl~svgg~~~- 78 (334)
T smart00636 2 VVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQL-KALKKKNPGLKVLLSIGGWTE- 78 (334)
T ss_pred EEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHH-HHHHHhCCCCEEEEEEeCCCC-
Confidence 6899997663 7899999999999999999999855 7877654332 45554 578888899999999999986
Q ss_pred chhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEec
Q 011487 219 PNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVY 297 (484)
Q Consensus 219 ~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~ 297 (484)
+..|+.++.+++.|++|+++|++++++|||||||||||++... .++.+|..||++||++|+++.. . +++++|+++++
T Consensus 79 s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~lsi~v~ 156 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYLLTIAVP 156 (334)
T ss_pred CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceEEEEEec
Confidence 6889999999999999999999999999999999999998643 6788999999999999987632 2 36899999999
Q ss_pred ccccccccCCCCCcC-hhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCC---CccHHHHHHHHHHcCCCCCCEeec
Q 011487 298 FASRFTIYGGPRGYP-IEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRS---NISTSYGIGSWIQAGVPAQKLVMG 373 (484)
Q Consensus 298 ~~~~~~~~~~~~~~d-~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~---~~~~~~~v~~~~~~Gvp~~KlvLG 373 (484)
+.... ....|+ +.+|.+++|+|+||+||+|+.|+..+|+++||+.... ..+++.+|+.|++.|+|++||+||
T Consensus 157 ~~~~~----~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 157 AGPDK----IDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred CChHH----HHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 76554 234578 5999999999999999999999989999999985443 458999999999999999999999
Q ss_pred CccceeeeeecCCCCCCCCCCcCCCCCC------CcccchHHHHHHhhcCCceEEEcCCCceeEEEe-C-CEEEEECCHH
Q 011487 374 LPLYGRTWKLKDPDVNGIGAPALGVGPG------DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA-G-DSWIGYDDVL 445 (484)
Q Consensus 374 lp~YG~~~~~~~~~~~~~~~~~~g~~~~------~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~-~-~~~isydd~~ 445 (484)
||||||.|++.+..++++++++.|.+.. .+.++|.|||+.+ ++...||+++.++|.|+ + .+||+|||++
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~~~~~~v~ydd~~ 309 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNPGTGQWVSYDDPR 309 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEECCCCEEEEcCCHH
Confidence 9999999999988888889988776431 6789999999875 79999999999999998 3 3799999999
Q ss_pred HHHHHHHHHHHCCCcEEEEEecCCC
Q 011487 446 SIKLKVQFAKSKGLGGYFFWAIGQD 470 (484)
Q Consensus 446 Sl~~K~~~ak~~gLgGv~iW~l~~D 470 (484)
|++.|++||+++||||+|+|+|++|
T Consensus 310 Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 310 SIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHhCCCCeEEEEeecCC
Confidence 9999999999999999999999998
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=5.8e-59 Score=474.85 Aligned_cols=306 Identities=25% Similarity=0.492 Sum_probs=252.8
Q ss_pred EEEEEecCCC------CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCC
Q 011487 144 IKAAYWPSFN------DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGS 217 (484)
Q Consensus 144 i~~gY~~~~~------~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~ 217 (484)
+++|||.+|. .+.+++|+.++||||+|+|+.+++++ ++...+ ....+.++. ++| ++|||||||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KLK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hhc----CcEEEEEEeCCCC
Confidence 3589999763 46788999999999999999999765 777653 334455543 232 4999999999986
Q ss_pred Cch-----hhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC----------hhhHHHHHHHHHHHHHHhHHhh
Q 011487 218 DPN-----VFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----------DQDMSNLALLFKQWRTSINQEA 282 (484)
Q Consensus 218 ~~~-----~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~----------~~~~~~~~~flk~Lr~~l~~~~ 282 (484)
+.. .|+.++ ++++|++||+++++++++|||||||||||+|+. .+++++|..||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 332 488888 999999999999999999999999999999852 46899999999999999963
Q ss_pred hhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCcc-------CCCCCCccHHH
Q 011487 283 RITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAAL-------NDPRSNISTSY 355 (484)
Q Consensus 283 ~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl-------~~~~~~~~~~~ 355 (484)
+++|+++++..... ...||+++|.+++||||||+|||||.|+..+++.+|. .......+++.
T Consensus 151 ------~~~ls~a~~~~~~~-----~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 219 (345)
T cd02878 151 ------GKSLSIAAPASYWY-----LKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLD 219 (345)
T ss_pred ------CcEEEEEcCCChhh-----hcCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHH
Confidence 57899998765443 4679999999999999999999999998555444431 11122345889
Q ss_pred HHHHHHHcCCCCCCEeecCccceeeeeecCCCCCCCCCCcCCCCC----C-----CcccchHHHHHH-hhcCCceEEEcC
Q 011487 356 GIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNGIGAPALGVGP----G-----DGVLTYNQIVKF-NMEGTAAVVFDA 425 (484)
Q Consensus 356 ~v~~~~~~Gvp~~KlvLGlp~YG~~~~~~~~~~~~~~~~~~g~~~----~-----~g~~~y~ei~~~-l~~~g~~~~~D~ 425 (484)
+|++|++.|+|++||+||||||||.|++.++.++++++++.|.+. + .+.+.|.|+|.. +..++++..||+
T Consensus 220 ~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~ 299 (345)
T cd02878 220 ALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDT 299 (345)
T ss_pred HHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEec
Confidence 999999999999999999999999999999999999999987642 1 334455998884 455789999999
Q ss_pred CCceeEE-EeCCEEEEECCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 011487 426 TPVAYHS-FAGDSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470 (484)
Q Consensus 426 ~s~~~y~-y~~~~~isydd~~Sl~~K~~~ak~~gLgGv~iW~l~~D 470 (484)
.++++|. |.+++||+|||++|++.|++||+++||||+|+|+|++|
T Consensus 300 ~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 300 DSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 9998875 77779999999999999999999999999999999987
No 6
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-58 Score=482.18 Aligned_cols=331 Identities=28% Similarity=0.535 Sum_probs=287.2
Q ss_pred CeEEEEEecCCC-CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCch
Q 011487 142 RGIKAAYWPSFN-DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPN 220 (484)
Q Consensus 142 ~~i~~gY~~~~~-~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~ 220 (484)
.+..+||+..+. ...+.+++..+|||++|+|+.++.++..+...+.....+.++.+.+|.+||++|+|+|||||.+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns~ 136 (432)
T KOG2806|consen 57 EKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNSG 136 (432)
T ss_pred cceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCcc
Confidence 445689998777 8899999999999999999999988844444443456888999999999999999999999954588
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC-ChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccc
Q 011487 221 VFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA-NDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFA 299 (484)
Q Consensus 221 ~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~-~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~ 299 (484)
.|+.++++++.|+.||++|+++|++|+|||||||||+|. .+.|+.+|..|+++||++|.++.+...+...+|+.++...
T Consensus 137 ~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~~ 216 (432)
T KOG2806|consen 137 LFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVADS 216 (432)
T ss_pred chhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeeccccC
Confidence 999999999999999999999999999999999999996 6789999999999999999999988887776666666554
Q ss_pred cc-ccccCCCCCcChhhhhccCceEEeeeccCCCCCCC--CCCCCCccCCCC----CCccHHHHHHHHHHcCCCCCCEee
Q 011487 300 SR-FTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWEN--FTGLHAALNDPR----SNISTSYGIGSWIQAGVPAQKLVM 372 (484)
Q Consensus 300 ~~-~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~--~~g~~spl~~~~----~~~~~~~~v~~~~~~Gvp~~KlvL 372 (484)
.. . ...+||+.+|.+++||||||+|||||+|.. .+|+.+|||... ...+++..+++|++.|.+++||+|
T Consensus 217 ~~~~----~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~ 292 (432)
T KOG2806|consen 217 KQSA----YSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVL 292 (432)
T ss_pred ccch----hhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEE
Confidence 33 3 478999999999999999999999999997 899999999753 267999999999999999999999
Q ss_pred cCccceeeeeecCCCCCCCCCCcCCCC-------CCCcccchHHHHHHhhcCCceEEEcCCCceeEEEe--CCEEEEECC
Q 011487 373 GLPLYGRTWKLKDPDVNGIGAPALGVG-------PGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFA--GDSWIGYDD 443 (484)
Q Consensus 373 Glp~YG~~~~~~~~~~~~~~~~~~g~~-------~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~--~~~~isydd 443 (484)
|+|||||.|++.+...+ .+.+..+.+ .+.|.++|.|||+...+.+ ...||++.+.+|+|+ +++||+|||
T Consensus 293 gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~~Y~~~~~~~~wvtyen 370 (432)
T KOG2806|consen 293 ALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQTPYLYNIPYDQWVTYEN 370 (432)
T ss_pred EEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCceeeeEEecCCCeEEecCC
Confidence 99999999999986555 443333221 1388999999999666555 789999999999999 899999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCcch-HHHH
Q 011487 444 VLSIKLKVQFAKSKGLGGYFFWAIGQDKDWT-LSKQ 478 (484)
Q Consensus 444 ~~Sl~~K~~~ak~~gLgGv~iW~l~~DD~~~-ll~a 478 (484)
++|++.|++||+++||||+|||.+++||+.. +|++
T Consensus 371 ~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~ 406 (432)
T KOG2806|consen 371 ERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNA 406 (432)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccc
Confidence 9999999999999999999999999997544 5654
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-59 Score=464.06 Aligned_cols=334 Identities=28% Similarity=0.476 Sum_probs=270.2
Q ss_pred CeEEEEEecCCC-----CCCCCCCCCCCccEEEEeeeeeeCCCCEEE-------------------EcCcC---hHHHHH
Q 011487 142 RGIKAAYWPSFN-----DFPASSIDTSYFTHIYYAFLLPEPKTFKLN-------------------VTLLD---HAKLLE 194 (484)
Q Consensus 142 ~~i~~gY~~~~~-----~~~~~~i~~~~~ThIi~af~~i~~~gg~l~-------------------~~~~~---~~~~~~ 194 (484)
.++++|||.+|+ .|.+.+|+++++|||+|||+.|+.++.... ...+. ...+.
T Consensus 37 ~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~~- 115 (441)
T COG3325 37 QFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHFG- 115 (441)
T ss_pred CceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchHH-
Confidence 458899999765 466789999999999999999998874211 11111 12333
Q ss_pred HHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC---------hhhHH
Q 011487 195 LVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN---------DQDMS 265 (484)
Q Consensus 195 ~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~---------~~~~~ 265 (484)
.++.+|++++++|+++|||||+. +..|+.++.+.+.|++|+++++++|++|+|||||||||||++ .++++
T Consensus 116 ~L~~lk~~~~d~k~l~SIGGWs~-S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ 194 (441)
T COG3325 116 ALFDLKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKA 194 (441)
T ss_pred HHHHHhhhCCCceEEEeeccccc-CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHH
Confidence 44789999999999999999997 889999999999999999999999999999999999999973 46789
Q ss_pred HHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccC
Q 011487 266 NLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALN 345 (484)
Q Consensus 266 ~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~ 345 (484)
+|+.||++||++|..++..+|| ++.||+|.+..... .++.+..++.++|||||+|+|||||.|...+||+++||
T Consensus 195 ny~~Ll~eLR~~LD~a~~edgr-~Y~LTiA~~as~~~-----l~~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly 268 (441)
T COG3325 195 NYVLLLQELRKKLDKAGVEDGR-HYQLTIAAPASKDK-----LEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALY 268 (441)
T ss_pred HHHHHHHHHHHHHhhcccccCc-eEEEEEecCCchhh-----hhcccHHHHHHHHhhhheeeeecccccccccccccccc
Confidence 9999999999999998888775 69999999987776 56888999999999999999999999999999999999
Q ss_pred CCCC-------Cc------cHHHHHHHHHHcCCCCCCEeecCccceeeeeecCCCC----CCCCCCcCC--CCCC-----
Q 011487 346 DPRS-------NI------STSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDV----NGIGAPALG--VGPG----- 401 (484)
Q Consensus 346 ~~~~-------~~------~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~~~~~~~----~~~~~~~~g--~~~~----- 401 (484)
+... .. .....++.....++||+|||||+|||||.|...+... .+..+.... ...+
T Consensus 269 ~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~ 348 (441)
T COG3325 269 GTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAG 348 (441)
T ss_pred cCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccc
Confidence 5222 11 2223455556778999999999999999999877544 223222222 1111
Q ss_pred CcccchH---HHHH-HhhcCCceEEEcCCCceeEEEeCC--EEEEECCHHHHHHHHHHHHHCCCcEEEEEecCCCCcchH
Q 011487 402 DGVLTYN---QIVK-FNMEGTAAVVFDATPVAYHSFAGD--SWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTL 475 (484)
Q Consensus 402 ~g~~~y~---ei~~-~l~~~g~~~~~D~~s~~~y~y~~~--~~isydd~~Sl~~K~~~ak~~gLgGv~iW~l~~DD~~~l 475 (484)
.+.-.|. .+.. ....+++.+.||+..+++|+|+.+ .+|+|||++|++.|.+||+++||||+|+|++++|.++.|
T Consensus 349 n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~~l 428 (441)
T COG3325 349 NGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENGVL 428 (441)
T ss_pred ccCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcchhH
Confidence 1111221 1111 233678899999999999999865 499999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 011487 476 SKQASIAW 483 (484)
Q Consensus 476 l~a~~~~~ 483 (484)
++++++.+
T Consensus 429 lna~~~~l 436 (441)
T COG3325 429 LNAVNEGL 436 (441)
T ss_pred HHHhhccc
Confidence 99999876
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=5e-58 Score=464.43 Aligned_cols=283 Identities=34% Similarity=0.610 Sum_probs=247.9
Q ss_pred EEEEecCCCCCCCC-----CCCCCCccEEEEeeeeeeCCCCEEEEcC-------------------cChHHHHHHHHHHH
Q 011487 145 KAAYWPSFNDFPAS-----SIDTSYFTHIYYAFLLPEPKTFKLNVTL-------------------LDHAKLLELVGTLR 200 (484)
Q Consensus 145 ~~gY~~~~~~~~~~-----~i~~~~~ThIi~af~~i~~~gg~l~~~~-------------------~~~~~~~~~i~~lk 200 (484)
++|||.+|..+... +|+.++||||+|+|+.+++++..+...+ .....+.++ ..+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQL-RKLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHH-HHHH
Confidence 47999987765433 5889999999999999998875443221 112455565 5889
Q ss_pred hhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC---------hhhHHHHHHHH
Q 011487 201 VQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN---------DQDMSNLALLF 271 (484)
Q Consensus 201 ~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~---------~~~~~~~~~fl 271 (484)
+++|++|||+|||||+. +..|+.++++++.|++||+++++++++|||||||||||+|+. .+++.+|..||
T Consensus 80 ~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll 158 (322)
T cd06548 80 QKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLL 158 (322)
T ss_pred HhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHH
Confidence 99999999999999986 678999999999999999999999999999999999999964 57899999999
Q ss_pred HHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCC--
Q 011487 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRS-- 349 (484)
Q Consensus 272 k~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~-- 349 (484)
++||++|++++++.+ ++++||++++..... ...+++++|.++||+||||+|||||.|...+|+++|||....
T Consensus 159 ~~Lr~~l~~~~~~~~-~~~~Ls~av~~~~~~-----~~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~ 232 (322)
T cd06548 159 KELREALDALGAETG-RKYLLTIAAPAGPDK-----LDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADP 232 (322)
T ss_pred HHHHHHHHHhhhccC-CceEEEEEccCCHHH-----HhcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCC
Confidence 999999998765554 368999999876655 456789999999999999999999999999999999986543
Q ss_pred --CccHHHHHHHHHHcCCCCCCEeecCccceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCC
Q 011487 350 --NISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATP 427 (484)
Q Consensus 350 --~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s 427 (484)
..+++.+++.|++.|+|++||+||||||||.|++ +...||+.+
T Consensus 233 ~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------~~~~~D~~~ 277 (322)
T cd06548 233 PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------YTRYWDEVA 277 (322)
T ss_pred CCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------cEEEEcCCc
Confidence 5789999999999999999999999999999962 678899999
Q ss_pred ceeEEEeC--CEEEEECCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 011487 428 VAYHSFAG--DSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470 (484)
Q Consensus 428 ~~~y~y~~--~~~isydd~~Sl~~K~~~ak~~gLgGv~iW~l~~D 470 (484)
+++|.|++ ++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 278 ~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 278 KAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred ceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99999988 78999999999999999999999999999999998
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=2.8e-54 Score=440.21 Aligned_cols=321 Identities=34% Similarity=0.637 Sum_probs=271.6
Q ss_pred eEEEEEecCCCC-----CCCCCCCCCCccEEEEeeeeeeCCCCEE-----EEcCcChHHHHHHHHHHHhhCCCcEEEEEE
Q 011487 143 GIKAAYWPSFND-----FPASSIDTSYFTHIYYAFLLPEPKTFKL-----NVTLLDHAKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 143 ~i~~gY~~~~~~-----~~~~~i~~~~~ThIi~af~~i~~~gg~l-----~~~~~~~~~~~~~i~~lk~~n~~~KvllSI 212 (484)
++++|||.+|.. +.+++++.++||||+|+|+.++.++... ...........+.++.+|++++++|||++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsi 80 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSI 80 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEe
Confidence 367999997643 5688999999999999999999888543 233334455555667888888999999999
Q ss_pred CCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh---hhHHHHHHHHHHHHHHhHHhhhhcCCCC
Q 011487 213 GGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND---QDMSNLALLFKQWRTSINQEARITNTSP 289 (484)
Q Consensus 213 GG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~---~~~~~~~~flk~Lr~~l~~~~~~~~~~~ 289 (484)
||+......|..++.+++.|++|+++|+++|++|||||||||||++... +++.+|..||++||++|++..+.. ++
T Consensus 81 gg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~--~~ 158 (343)
T PF00704_consen 81 GGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG--KG 158 (343)
T ss_dssp EETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--ST
T ss_pred ccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--ce
Confidence 9998733499999999999999999999999999999999999998653 589999999999999999876544 37
Q ss_pred eEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCC---CCccHHHHHHHHHHcCCC
Q 011487 290 LLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPR---SNISTSYGIGSWIQAGVP 366 (484)
Q Consensus 290 ~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~---~~~~~~~~v~~~~~~Gvp 366 (484)
++|+++++..... ...++++++.+++|||+||+||+++.|...+++++|+++.. ...+++.+++.|++.|+|
T Consensus 159 ~~ls~a~p~~~~~-----~~~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p 233 (343)
T PF00704_consen 159 YILSVAVPPSPDY-----YDKYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVP 233 (343)
T ss_dssp SEEEEEEECSHHH-----HTTHHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTST
T ss_pred eEEeecccccccc-----ccccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhccccCC
Confidence 8999998876664 34558999999999999999999999888999999998655 367899999999999999
Q ss_pred CCCEeecCccceeeeeecCCCCCCCCCCcC---CCCCC-CcccchHHHHHHhhcCCceEEEcCCCceeEEEeC--CEEEE
Q 011487 367 AQKLVMGLPLYGRTWKLKDPDVNGIGAPAL---GVGPG-DGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAG--DSWIG 440 (484)
Q Consensus 367 ~~KlvLGlp~YG~~~~~~~~~~~~~~~~~~---g~~~~-~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~--~~~is 440 (484)
++||+||||+||+.|++.+...+...++.. +.+.. .+.+.|.++|+.++.+++...||+..+++|.|.. ++||+
T Consensus 234 ~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~i~ 313 (343)
T PF00704_consen 234 PSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKHWIS 313 (343)
T ss_dssp GGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred hhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCeEEE
Confidence 999999999999999999877766655432 12222 7899999999999888999999999999999998 68999
Q ss_pred ECCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 011487 441 YDDVLSIKLKVQFAKSKGLGGYFFWAIGQD 470 (484)
Q Consensus 441 ydd~~Sl~~K~~~ak~~gLgGv~iW~l~~D 470 (484)
|||++|+++|++|++++||||+|+|+|++|
T Consensus 314 ~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 314 YEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp E--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2.5e-53 Score=429.53 Aligned_cols=294 Identities=20% Similarity=0.289 Sum_probs=242.8
Q ss_pred EEEEEecCCC--CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEE--EEECCCCCCc
Q 011487 144 IKAAYWPSFN--DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKIL--LSIGGGGSDP 219 (484)
Q Consensus 144 i~~gY~~~~~--~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~Kvl--lSIGG~~~~~ 219 (484)
.++|||.+|. .+.+.+++.++||||+++|+.++++++.+......+ ....+++.+|++++++||+ +++|||+.
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~-~~~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHD-IDKGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcc-hhhHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4589999765 456778888999999999999998876565543211 2234567889999999999 77799964
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe-ecCCCC---hhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEE
Q 011487 220 NVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD-WEFPAN---DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAA 295 (484)
Q Consensus 220 ~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID-wE~p~~---~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsva 295 (484)
..|+.++++++.|++||+++++++++||||||||| ||++.. ++++++|+.||++||++|++ .++.|+++
T Consensus 81 ~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~-------~~~~l~~~ 153 (318)
T cd02876 81 QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHS-------ANLKLILV 153 (318)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhh-------cCCEEEEE
Confidence 46999999999999999999999999999999999 999853 35899999999999999986 35677777
Q ss_pred eccccccc-ccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcC-CCCCCEeec
Q 011487 296 VYFASRFT-IYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAG-VPAQKLVMG 373 (484)
Q Consensus 296 v~~~~~~~-~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~G-vp~~KlvLG 373 (484)
+++..... .......||+++|.+++|+|+||+||+||. ..+|+++|++ +++.+++++++.| +|++||+||
T Consensus 154 v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~------~v~~~v~~~~~~~~vp~~KlvlG 225 (318)
T cd02876 154 IPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS------WVRSCLELLLPESGKKRAKILLG 225 (318)
T ss_pred EcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHeEEe
Confidence 76543210 011245689999999999999999999986 6899999996 7999999999887 999999999
Q ss_pred CccceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCc-eeEEEeC---CEEEEECCHHHHHH
Q 011487 374 LPLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPV-AYHSFAG---DSWIGYDDVLSIKL 449 (484)
Q Consensus 374 lp~YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~-~~y~y~~---~~~isydd~~Sl~~ 449 (484)
||||||.|++.+ . .+.+++.++++++.+.++...||++++ ..|.|.+ ++||||||++|+++
T Consensus 226 ip~YG~~w~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~~ 290 (318)
T cd02876 226 LNFYGNDYTLPG-----G----------GGAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQL 290 (318)
T ss_pred ccccccccccCC-----C----------CceeehHHHHHHHHhcCCCceeccCCCcceEEEecCCCcEEEEeCCHHHHHH
Confidence 999999998654 1 123444566666767788999999955 5688876 57999999999999
Q ss_pred HHHHHHHCCCcEEEEEecCCCC
Q 011487 450 KVQFAKSKGLGGYFFWAIGQDK 471 (484)
Q Consensus 450 K~~~ak~~gLgGv~iW~l~~DD 471 (484)
|++||+++|| |+|+|+||+|+
T Consensus 291 K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 291 RLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHcCC-cEEEEcccCCc
Confidence 9999999999 99999999994
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=2.3e-49 Score=405.30 Aligned_cols=298 Identities=20% Similarity=0.293 Sum_probs=237.7
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCch
Q 011487 141 FRGIKAAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPN 220 (484)
Q Consensus 141 ~~~i~~gY~~~~~~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~ 220 (484)
.++.++||..+...+ ...+++++|||.+. + .+ + .+++..+|++ |+||+++. +..
T Consensus 34 ~~~~~~~~~~~~~~~--~~~~~~~~tti~~~-------~-~~-----~----~~~~~~A~~~--~v~v~~~~-~~~---- 87 (358)
T cd02875 34 PRFEFLVFSVNSTNY--PNYDWSKVTTIAIF-------G-DI-----D----DELLCYAHSK--GVRLVLKG-DVP---- 87 (358)
T ss_pred CceEEEEEEeCCCcC--cccccccceEEEec-------C-CC-----C----HHHHHHHHHc--CCEEEEEC-ccC----
Confidence 366789999755333 56778899999976 1 11 1 2466666665 89999873 222
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC--hhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 221 VFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN--DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 221 ~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~--~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
...+.+++.|++||+++++++++|||||||||||+|.. ..++++|+.||++||++|++++ ++++|+++++.
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~Lsvav~~ 160 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQISFDVAW 160 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEec
Confidence 13478999999999999999999999999999999963 4679999999999999998753 46899999886
Q ss_pred cccccccCCCCCcChhhhhccCceEEeeeccCCCC-CC--CCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCc
Q 011487 299 ASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGS-WE--NFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375 (484)
Q Consensus 299 ~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~-w~--~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp 375 (484)
.+... ....||+++|.+++|||+||+||+|+. |+ ..+|+++|+. +++.+|+.|++.|+|++||+||||
T Consensus 161 ~p~~~---~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip 231 (358)
T cd02875 161 SPSCI---DKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLP 231 (358)
T ss_pred Ccccc---cccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeC
Confidence 54431 223599999999999999999999975 65 3688888874 789999999999999999999999
Q ss_pred cceeeeeecCCCCC-----CCCCCcCCCCCC---CcccchHHHHHHhhcCCceEEEcCCCceeEE-EeC---C-EEEEEC
Q 011487 376 LYGRTWKLKDPDVN-----GIGAPALGVGPG---DGVLTYNQIVKFNMEGTAAVVFDATPVAYHS-FAG---D-SWIGYD 442 (484)
Q Consensus 376 ~YG~~~~~~~~~~~-----~~~~~~~g~~~~---~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~-y~~---~-~~isyd 442 (484)
+|||+|.+.+.... ..+.+..|.++. ++.++|.||++.+++.++.+.||+.++++|. |.+ . +|||||
T Consensus 232 ~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~yd 311 (358)
T cd02875 232 WYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVWYD 311 (358)
T ss_pred CCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEEeC
Confidence 99999997654322 123333333211 4578999999998888889999999998876 543 2 499999
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEEecCCCCcchHHHHHH
Q 011487 443 DVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSKQAS 480 (484)
Q Consensus 443 d~~Sl~~K~~~ak~~gLgGv~iW~l~~DD~~~ll~a~~ 480 (484)
|++|++.|++||+++||||+|+|+||+||.....+|.+
T Consensus 312 D~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~~~ 349 (358)
T cd02875 312 NPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIAEK 349 (358)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccccccCCCchhhh
Confidence 99999999999999999999999999999888876553
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=2.2e-49 Score=400.02 Aligned_cols=293 Identities=22% Similarity=0.338 Sum_probs=240.2
Q ss_pred EEEEEecCCCCC--CCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCC---CC
Q 011487 144 IKAAYWPSFNDF--PASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGG---SD 218 (484)
Q Consensus 144 i~~gY~~~~~~~--~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~---~~ 218 (484)
.++||+.++... ....-..+++|||++.|+.++++| .+... . ..++++.+|++ ++||+++|||+. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 468999976654 333445689999999999999876 44322 1 24566666765 899999999986 45
Q ss_pred chhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 219 PNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 219 ~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
...|+.++++++.|++||++|++++++|||||||||||++ ..+++.+|..||++||++|++ .+++|++++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~-~~~d~~~~~~fl~~lr~~l~~-------~~~~lsv~~~p 146 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENV-PPEDREAYTQFLRELSDRLHP-------AGYTLSTAVVP 146 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccC-CHHHHHHHHHHHHHHHHHhhh-------cCcEEEEEecC
Confidence 7788999999999999999999999999999999999998 577899999999999999986 45788888765
Q ss_pred cccccc-cCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccc
Q 011487 299 ASRFTI-YGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLY 377 (484)
Q Consensus 299 ~~~~~~-~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~Y 377 (484)
...... ......|++++|.+++|+|+||+||+|+.| ..+|+++|+. +++..+++++ .|+|++||+||||+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~-~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip~Y 218 (313)
T cd02874 147 KTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG-GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIPLY 218 (313)
T ss_pred ccccccccccccccCHHHHHhhCCEEEEEEeccCCCC-CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeeccc
Confidence 432200 002467899999999999999999999985 5788999884 5677777655 789999999999999
Q ss_pred eeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeE-EEeC----CEEEEECCHHHHHHHHH
Q 011487 378 GRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYH-SFAG----DSWIGYDDVLSIKLKVQ 452 (484)
Q Consensus 378 G~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y-~y~~----~~~isydd~~Sl~~K~~ 452 (484)
||.|++.+.. .+. .+.++|.++++++.+.++...||+.++++| .|.+ .+||||||++|+++|++
T Consensus 219 G~~w~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~ 287 (313)
T cd02874 219 GYDWTLPYKK--------GGK---ASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFE 287 (313)
T ss_pred ccccccCCCC--------CcC---ccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHH
Confidence 9999875411 011 567889999999999999999999998876 4543 25999999999999999
Q ss_pred HHHHCCCcEEEEEecCCCC
Q 011487 453 FAKSKGLGGYFFWAIGQDK 471 (484)
Q Consensus 453 ~ak~~gLgGv~iW~l~~DD 471 (484)
|++++||||+++|+||+||
T Consensus 288 ~~~~~~lgGv~iW~lg~dD 306 (313)
T cd02874 288 LAKEYGLRGVSYWRLGLED 306 (313)
T ss_pred HHHHcCCCeEEEEECCCCC
Confidence 9999999999999999996
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=7.9e-46 Score=371.06 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=229.3
Q ss_pred EEEEEecCCCCCCCC--CCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchh
Q 011487 144 IKAAYWPSFNDFPAS--SIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNV 221 (484)
Q Consensus 144 i~~gY~~~~~~~~~~--~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~ 221 (484)
+++|||.+|...... ....+++|||++.|+.+...+|.+.... +.....+++.+|++++.++++.+++|+..+...
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~--d~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~ 78 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV--DPQGVAIIAAAKAHPKVLPLVQNISGGAWDGKN 78 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccC--ChHHHHHHHHHHcCCceeEEEEecCCCCCCHHH
Confidence 357999877654433 2345699999999999985555776532 223344556778777888999999988766678
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccccc
Q 011487 222 FSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASR 301 (484)
Q Consensus 222 f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~ 301 (484)
|+.++.+++.|++||+++++++++|||||||||||++ ...++++|+.||++||++|++ .+++|+++++..
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~-~~~d~~~~~~fl~eL~~~l~~-------~~~~lsv~v~~~-- 148 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEEL-PADDLPKYVAFLSELRRRLPA-------QGKQLTVTVPAD-- 148 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCC-ChhHHHHHHHHHHHHHHHhhh-------cCcEEEEEecCC--
Confidence 9999999999999999999999999999999999998 578899999999999999986 357899998753
Q ss_pred ccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccceeee
Q 011487 302 FTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTW 381 (484)
Q Consensus 302 ~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~ 381 (484)
...||+++|.+++|+|+||+||+|+.+ +.+||.+++. +++..+++. ..|+|++||+||||+|||+|
T Consensus 149 ------~~~~d~~~l~~~~D~v~lMtYD~~~~~-~~~gp~a~~~------~~~~~~~~~-~~~vp~~KlvlGip~YG~~w 214 (298)
T cd06549 149 ------EADWNLKALARNADKLILMAYDEHYQG-GAPGPIASQD------WFESNLAQA-VKKLPPEKLIVALGSYGYDW 214 (298)
T ss_pred ------CCCCCHHHHHHhCCEEEEEEeccCCCC-CCCCCCCChh------hHHHHHHHH-HhCCCHHHEEEEecccCccc
Confidence 345899999999999999999999864 3566666652 456666654 46799999999999999999
Q ss_pred eecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCc-eeEEEeC--C--EEEEECCHHHHHHHHHHHHH
Q 011487 382 KLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPV-AYHSFAG--D--SWIGYDDVLSIKLKVQFAKS 456 (484)
Q Consensus 382 ~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~-~~y~y~~--~--~~isydd~~Sl~~K~~~ak~ 456 (484)
++... ...++..++.+.+.+.+..+.||++.. ..|.|.+ + ++|||+|.+|+++|+++|++
T Consensus 215 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~ 279 (298)
T cd06549 215 TKGGN---------------TKAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQR 279 (298)
T ss_pred cCCCC---------------CcccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHH
Confidence 86431 123445666665666777888877654 5566632 2 48999999999999999999
Q ss_pred CCCcEEEEEecCCCCc
Q 011487 457 KGLGGYFFWAIGQDKD 472 (484)
Q Consensus 457 ~gLgGv~iW~l~~DD~ 472 (484)
+||||+++|+||+||.
T Consensus 280 ~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 280 LGPAGVALWRLGSEDP 295 (298)
T ss_pred cCCCcEEEEeccCCCC
Confidence 9999999999999974
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=6.1e-46 Score=363.83 Aligned_cols=247 Identities=28% Similarity=0.529 Sum_probs=208.4
Q ss_pred EEEEecCCCCCC--CCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhh
Q 011487 145 KAAYWPSFNDFP--ASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVF 222 (484)
Q Consensus 145 ~~gY~~~~~~~~--~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f 222 (484)
++|||++|..+. +++++.++||||+++|+.++++| .+.+.+ ....+..+++.+|++ ++||+++|||+.. ..|
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~-~~~~~~~~~~~~~~~--~~kvl~sigg~~~--~~~ 74 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANP-VRSELNSVVNAAHAH--NVKILISLAGGSP--PEF 74 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecC-cHHHHHHHHHHHHhC--CCEEEEEEcCCCC--Ccc
Confidence 479999887665 78999999999999999999776 777654 234566777777764 8999999999864 346
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccc
Q 011487 223 SKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRF 302 (484)
Q Consensus 223 ~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~ 302 (484)
..++.+++.|++|++++++++++|||||||||||++... +++|..|+++||++|++ .+++|+++++.....
T Consensus 75 ~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~-------~~~~lt~av~~~~~~ 145 (253)
T cd06545 75 TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKK-------EGKLLTAAVSSWNGG 145 (253)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhh-------cCcEEEEEccCcccc
Confidence 678999999999999999999999999999999998543 78999999999999975 357899998753221
Q ss_pred cccCCCCCcChhhhhccCceEEeeeccCCCCCC-CCCCCCCccCCCCCCccHHHHHHHHHHcCC-CCCCEeecCccceee
Q 011487 303 TIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWE-NFTGLHAALNDPRSNISTSYGIGSWIQAGV-PAQKLVMGLPLYGRT 380 (484)
Q Consensus 303 ~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~-~~~g~~spl~~~~~~~~~~~~v~~~~~~Gv-p~~KlvLGlp~YG~~ 380 (484)
.+ ..++.+++|+|+||+||++|.|. ..+|+++++. +++..+++|+..|+ |++||+||||+|||+
T Consensus 146 -------~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~ 211 (253)
T cd06545 146 -------AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYG 211 (253)
T ss_pred -------cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCcccc
Confidence 13 36678899999999999999986 4688888874 68899999999988 999999999999998
Q ss_pred eeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeEEEeCCEEEEECCHHHHHHHHHHHHHCCCc
Q 011487 381 WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGLG 460 (484)
Q Consensus 381 ~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~~~~isydd~~Sl~~K~~~ak~~gLg 460 (484)
|. |++..++++|+++++++ +|
T Consensus 212 w~----------------------------------------------------------~~~~~~~~~~~~~~~~~-~g 232 (253)
T cd06545 212 FY----------------------------------------------------------YNGIPTIRNKVAFAKQN-YG 232 (253)
T ss_pred cc----------------------------------------------------------CCCHHHHHHHHHHHHHh-cC
Confidence 72 57777899999999999 99
Q ss_pred EEEEEecCCC--CcchHHHHH
Q 011487 461 GYFFWAIGQD--KDWTLSKQA 479 (484)
Q Consensus 461 Gv~iW~l~~D--D~~~ll~a~ 479 (484)
|+|+|++++| ++.+|++++
T Consensus 233 G~~~w~~~~d~~~~~~l~~~~ 253 (253)
T cd06545 233 GVMIWELSQDASGENSLLNAI 253 (253)
T ss_pred eEEEEeccCCCCCCcchhhcC
Confidence 9999999999 556888764
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=4.7e-36 Score=285.21 Aligned_cols=205 Identities=34% Similarity=0.568 Sum_probs=172.6
Q ss_pred EEEEecCCCCCCC---CCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchh
Q 011487 145 KAAYWPSFNDFPA---SSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNV 221 (484)
Q Consensus 145 ~~gY~~~~~~~~~---~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~ 221 (484)
++|||.+|..... ..++.++||||+++|+.+++++................++.+|++++++||++||||+.. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~-~~~ 79 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD-SSP 79 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC-CCC
Confidence 3799997776554 788889999999999999987744331222334455666788888899999999999986 333
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChh--hHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccc
Q 011487 222 FSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ--DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFA 299 (484)
Q Consensus 222 f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~--~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~ 299 (484)
+ .++.+++.|++|++++++++++|||||||||||++.... ++++|..||++||++|++ .+++||+++++.
T Consensus 80 ~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~-------~~~~ls~a~~~~ 151 (210)
T cd00598 80 F-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA-------ANYLLTIAVPAS 151 (210)
T ss_pred c-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc-------cCcEEEEEecCC
Confidence 4 788999999999999999999999999999999986543 589999999999999975 368999999876
Q ss_pred ccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCcccee
Q 011487 300 SRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGR 379 (484)
Q Consensus 300 ~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~ 379 (484)
... ....|++.++.+++|+|++|+|| |+||+|+|
T Consensus 152 ~~~----~~~~~~~~~l~~~vD~v~vm~Yd----------------------------------------l~~g~~~~-- 185 (210)
T cd00598 152 YFD----LGYAYDVPAIGDYVDFVNVMTYD----------------------------------------LVLGVPFY-- 185 (210)
T ss_pred hHH----hhccCCHHHHHhhCCEEEEeeec----------------------------------------ccccchhh--
Confidence 655 22358999999999999999999 88888877
Q ss_pred eeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeEEEeCCEEEEECCHHHHHHHHHHHHHCCC
Q 011487 380 TWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGL 459 (484)
Q Consensus 380 ~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~~~~isydd~~Sl~~K~~~ak~~gL 459 (484)
|++.|++|+++++|
T Consensus 186 ------------------------------------------------------------------s~~~k~~~~~~~~~ 199 (210)
T cd00598 186 ------------------------------------------------------------------SLGAKAKYAKQKGL 199 (210)
T ss_pred ------------------------------------------------------------------hHHHHHHHHHHcCC
Confidence 79999999999999
Q ss_pred cEEEEEecCCC
Q 011487 460 GGYFFWAIGQD 470 (484)
Q Consensus 460 gGv~iW~l~~D 470 (484)
||+|+|++++|
T Consensus 200 gGv~~w~~~~d 210 (210)
T cd00598 200 GGVMIWELDQD 210 (210)
T ss_pred ceEEEEeccCC
Confidence 99999999987
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=278.78 Aligned_cols=247 Identities=23% Similarity=0.347 Sum_probs=198.4
Q ss_pred CcEEEE--EECC---CCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhH
Q 011487 205 HIKILL--SIGG---GGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 205 ~~Kvll--SIGG---~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~ 279 (484)
++|.++ |-++ .+++.+.++.+++++..++++++++++.++++|+.|+.||+|.. ...|++.|..|+|++|++|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v-~~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENV-GPGDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhC-CHHHHHHHHHHHHHHHHHhc
Confidence 455554 4444 23345667899999999999999999999999999999999998 58899999999999999998
Q ss_pred HhhhhcCCCCeEEEEEecccccccccC-CCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHH
Q 011487 280 QEARITNTSPLLLTAAVYFASRFTIYG-GPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIG 358 (484)
Q Consensus 280 ~~~~~~~~~~~~Lsvav~~~~~~~~~~-~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~ 358 (484)
+ .++.+++|+++.....+.+ +...||+..+.+++|||.||+||.|..| +.+|+.|++- +++..++
T Consensus 239 ~-------~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~------~vr~~ie 304 (423)
T COG3858 239 S-------GGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG-GPPGPVASIG------WVRKVIE 304 (423)
T ss_pred c-------CCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC-CCCCcccCch------hHhhhhh
Confidence 6 5689999999876432221 4678999999999999999999998775 6788888873 5666666
Q ss_pred HHHHcCCCCCCEeecCccceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeEEE-eC--
Q 011487 359 SWIQAGVPAQKLVMGLPLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSF-AG-- 435 (484)
Q Consensus 359 ~~~~~Gvp~~KlvLGlp~YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y-~~-- 435 (484)
+-+. -+|++||+||+|+|||+|.+....... ....+++.+...+.++.++++.||..++.+|.| .+
T Consensus 305 ya~T-~iP~~Kv~mGip~YGYDW~~~y~~~g~----------~~~a~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D~e 373 (423)
T COG3858 305 YALT-VIPAEKVMMGIPLYGYDWTLPYDPLGY----------LARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKE 373 (423)
T ss_pred hhhe-ecchHHeEEccccccccccCCCCCCcc----------eeeecCcchhhhhhcccCCccCcCccccCceEEEEcCC
Confidence 6555 499999999999999999876532110 011255566566666788999999999977654 33
Q ss_pred --CEEEEECCHHHHHHHHHHHHHCCCcEEEEEecCCCC--cchHHH
Q 011487 436 --DSWIGYDDVLSIKLKVQFAKSKGLGGYFFWAIGQDK--DWTLSK 477 (484)
Q Consensus 436 --~~~isydd~~Sl~~K~~~ak~~gLgGv~iW~l~~DD--~~~ll~ 477 (484)
.++|||||.+|+..|.+++|++||.||++|.|+++| +|..|.
T Consensus 374 g~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~w~~l~ 419 (423)
T COG3858 374 GRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRNWTYLP 419 (423)
T ss_pred CceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhHHhhcc
Confidence 249999999999999999999999999999999994 666653
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=9.6e-32 Score=262.97 Aligned_cols=200 Identities=18% Similarity=0.306 Sum_probs=147.0
Q ss_pred EEEEEecCCCC--------CCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcC--hH---HHHHHHHHHHhhCCCcEEEE
Q 011487 144 IKAAYWPSFND--------FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLD--HA---KLLELVGTLRVQNSHIKILL 210 (484)
Q Consensus 144 i~~gY~~~~~~--------~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~--~~---~~~~~i~~lk~~n~~~Kvll 210 (484)
+++|||..+.. +.+..++..+||||+|+|+.++.+| ++.+.+.. .. .+.+.++.+| ++++||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~--~~g~KVll 77 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQ--SSGVKVMG 77 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHH--hCCCEEEE
Confidence 46899985421 2233556789999999999999765 78776532 12 2333344555 46999999
Q ss_pred EECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCe
Q 011487 211 SIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPL 290 (484)
Q Consensus 211 SIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~ 290 (484)
|||||.. ..|+.+..+++.|++|++++++++++|+|||||||||++. +..+|..||++||++|+ +++
T Consensus 78 SiGG~~~--~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~--------~~~ 144 (256)
T cd06546 78 MLGGAAP--GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFG--------PDF 144 (256)
T ss_pred EECCCCC--CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhC--------CCc
Confidence 9999974 3488888899999999999999999999999999999974 35799999999999985 458
Q ss_pred EEEEEecccccccccCCCCCcChhhhh----ccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCC
Q 011487 291 LLTAAVYFASRFTIYGGPRGYPIEAIN----KYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVP 366 (484)
Q Consensus 291 ~Lsvav~~~~~~~~~~~~~~~d~~~l~----~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp 366 (484)
+||+++.+..-..+......+++.++. +++||+|+|.||.+|. . .. ......|...++|
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~---~----~~----------~~~~~~~~~~~~~ 207 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGS---M----SS----------PSDYDAIVAQGWD 207 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCC---c----cC----------HHHHHHHHHcCCC
Confidence 899987654322111134567776665 5999999999997653 1 10 1123345566899
Q ss_pred CCCEeecCcc
Q 011487 367 AQKLVMGLPL 376 (484)
Q Consensus 367 ~~KlvLGlp~ 376 (484)
++||++|+|.
T Consensus 208 ~~Kv~iGlpa 217 (256)
T cd06546 208 PERIVIGLLT 217 (256)
T ss_pred cccEEEEEec
Confidence 9999999995
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=7e-32 Score=262.61 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=144.8
Q ss_pred CCCCCCCCCCCCC--ccEEEEeeee-eeC----CCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCc-hhhh
Q 011487 152 FNDFPASSIDTSY--FTHIYYAFLL-PEP----KTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDP-NVFS 223 (484)
Q Consensus 152 ~~~~~~~~i~~~~--~ThIi~af~~-i~~----~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~-~~f~ 223 (484)
....++++||.+. ||||+|+|+. .+. .++.+.....++....+.+..+|+++|++|||+|||||+... ..+.
T Consensus 10 ~~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 10 FNGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 3456789999888 9999999993 322 133444333333333445579999999999999999998632 2222
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccccccc
Q 011487 224 KMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFT 303 (484)
Q Consensus 224 ~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~ 303 (484)
...+....|++|+++++++|++|||||||||||++. .++.+|..||++||++|++. ++++.+++.+....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~-------~~lt~a~vap~~~~- 159 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNN-------GVIKVASIAPSEDA- 159 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhc-------CCeEEEEecCCccc-
Confidence 233444566777999999999999999999999973 56899999999999999862 33433333332222
Q ss_pred ccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccceeeee
Q 011487 304 IYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWK 382 (484)
Q Consensus 304 ~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~ 382 (484)
. ..+++..+.+++|+|++|+||+++.+. |. +.....+..+.|. .++|++||++|+|++++.|.
T Consensus 160 ---~-~~~y~~~~~~~~d~id~~~~qfy~~~~----~~-------~~~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 160 ---E-QSHYLALYNAYGDYIDYVNYQFYNYGV----PT-------TVAKYVEFYDEVA-NNYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred ---c-ccccHHHHHHhhCceeEEEhhhhCCCC----CC-------CHHHHHHHHHHHH-hCCCcccEEEEEecCCCccC
Confidence 1 345578889999999999999998633 11 1011223444444 46999999999999998774
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=6e-31 Score=265.13 Aligned_cols=214 Identities=23% Similarity=0.374 Sum_probs=151.0
Q ss_pred eEEEEEecCCCCC------CCCCCCCCCccEEEEeeeeeeCCCC-EEEEc------CcChHHHHHHHHHHHhhCCCcEEE
Q 011487 143 GIKAAYWPSFNDF------PASSIDTSYFTHIYYAFLLPEPKTF-KLNVT------LLDHAKLLELVGTLRVQNSHIKIL 209 (484)
Q Consensus 143 ~i~~gY~~~~~~~------~~~~i~~~~~ThIi~af~~i~~~gg-~l~~~------~~~~~~~~~~i~~lk~~n~~~Kvl 209 (484)
++++|||++|... .++.++ +.||||+++|+.++.++. .+.+. ......+.+.++.+|++ ++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~-~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVP-SKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCC-CCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 3679999976543 344554 899999999999986542 23321 22345667777788876 89999
Q ss_pred EEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh----hhHHHHHHHHHHHHHHhHHhhhhc
Q 011487 210 LSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----QDMSNLALLFKQWRTSINQEARIT 285 (484)
Q Consensus 210 lSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~----~~~~~~~~flk~Lr~~l~~~~~~~ 285 (484)
||||||.+.. .+.+++.|++|++++++++++|||||||||||++... .++.+|..|||+||++|+
T Consensus 78 lSiGG~~~~~-----~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~------ 146 (312)
T cd02871 78 ISIGGANGHV-----DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYG------ 146 (312)
T ss_pred EEEeCCCCcc-----ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC------
Confidence 9999997522 3678899999999999999999999999999998533 478999999999999985
Q ss_pred CCCCeEEEEEecccccccc---cC-CCCCc--ChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHH
Q 011487 286 NTSPLLLTAAVYFASRFTI---YG-GPRGY--PIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGS 359 (484)
Q Consensus 286 ~~~~~~Lsvav~~~~~~~~---~~-~~~~~--d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~ 359 (484)
.+++||+|+.+.....+ +. ....| .++++.+++|||++|.||.++.+ ++....+.. ........+..
T Consensus 147 --~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~----~~~~~~~~~-~~~~~~~~~~~ 219 (312)
T cd02871 147 --PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG----GCDGQSYSQ-GTADFLVALAD 219 (312)
T ss_pred --CCeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc----cccccCCcc-chhHHHHHHHH
Confidence 36899999765432200 00 01223 25788899999999999987642 222211111 11123333333
Q ss_pred HHHcC-----------CCCCCEeecCccc
Q 011487 360 WIQAG-----------VPAQKLVMGLPLY 377 (484)
Q Consensus 360 ~~~~G-----------vp~~KlvLGlp~Y 377 (484)
++..| +|++||+||+|+.
T Consensus 220 ~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 220 MLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHcCCCccCCcccccCChhhEEEeccCC
Confidence 44444 8999999999975
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=219.77 Aligned_cols=297 Identities=17% Similarity=0.188 Sum_probs=225.5
Q ss_pred CeEEEEEecCCC--CCCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCc
Q 011487 142 RGIKAAYWPSFN--DFPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDP 219 (484)
Q Consensus 142 ~~i~~gY~~~~~--~~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~ 219 (484)
..-+.||..+|+ .|.+..+-.+++|||.+.|+.+...|..+.... .++....+++++|+++++++++.-+-=.....
T Consensus 78 ~~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G-~hdid~gwiralRk~~~~l~ivPR~~fd~~~~ 156 (392)
T KOG2091|consen 78 GGTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYG-KHDIDPGWIRALRKSGKDLHIVPRFYFDEFTS 156 (392)
T ss_pred CCceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEee-cccCChHHHHHHHHhCCCceeeceehhhhccc
Confidence 456689988554 688999988999999999999987764444432 33444678899999999999987664444446
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC-ChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 220 NVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA-NDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 220 ~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~-~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
..+..++.+.+.|++..+.++++++++||||+.|+.-..- .--.......|++.|-.+|++ ..+++-+.+|+
T Consensus 157 ~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhk-------q~l~~iLvvPp 229 (392)
T KOG2091|consen 157 ADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHK-------QELQAILVVPP 229 (392)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------hheEEEEEeCC
Confidence 7888999999999999999999999999999999864210 111123345667777777775 34555555554
Q ss_pred cc--cccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCcc
Q 011487 299 AS--RFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPL 376 (484)
Q Consensus 299 ~~--~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~ 376 (484)
.. ..........-+++.|.+.+|.+.+|+|||.+. ..+|+++|++ +++.++..+.-...-+.||++||.|
T Consensus 230 ~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGlNF 301 (392)
T KOG2091|consen 230 VIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGLNF 301 (392)
T ss_pred CCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCHH------HHHHHHHHhCCccccccceeEeeec
Confidence 21 111010112235788999999999999999863 5789999995 7888888765444556899999999
Q ss_pred ceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCcee-EEEeC----CEEEEECCHHHHHHHH
Q 011487 377 YGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAY-HSFAG----DSWIGYDDVLSIKLKV 451 (484)
Q Consensus 377 YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~-y~y~~----~~~isydd~~Sl~~K~ 451 (484)
||++|...++ .+.++-.+..++++.+.....||++++.. |.|.. ++.|.|.+..||+.++
T Consensus 302 YG~d~~~gdg---------------~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri 366 (392)
T KOG2091|consen 302 YGNDFNLGDG---------------GEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRI 366 (392)
T ss_pred cccccccCCC---------------CCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHHHHH
Confidence 9999976221 45788888899999899999999999864 55652 4589999999999999
Q ss_pred HHHHHCCCcEEEEEecCCC
Q 011487 452 QFAKSKGLGGYFFWAIGQD 470 (484)
Q Consensus 452 ~~ak~~gLgGv~iW~l~~D 470 (484)
++|++.| .||+||++||.
T Consensus 367 ~lA~~~g-vgISIWe~GqG 384 (392)
T KOG2091|consen 367 ELARELG-VGISIWEYGQG 384 (392)
T ss_pred HHHHHhC-CceEeeeccCc
Confidence 9999999 49999999997
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.94 E-value=1.2e-25 Score=220.69 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=173.3
Q ss_pred EEEEEecCCCC------CCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCC
Q 011487 144 IKAAYWPSFND------FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGS 217 (484)
Q Consensus 144 i~~gY~~~~~~------~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~ 217 (484)
+..|||++|.. ..+.+++ +.+++|++.+..++.++... .........+.++.+|++ |+|||++|||+..
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~~ 76 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNHL 76 (255)
T ss_pred eEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCCC
Confidence 56899997765 6788887 89999999555544332110 112234556677777776 9999999999976
Q ss_pred CchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC------hhhHHHHHHHHHHHHHHhHHhhhhcCCCCeE
Q 011487 218 DPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN------DQDMSNLALLFKQWRTSINQEARITNTSPLL 291 (484)
Q Consensus 218 ~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~------~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~ 291 (484)
...| ....+++.|++|+++|++++++|||||||||||++.. ..+.++|..||++||++|++ .+++
T Consensus 77 -~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~-------~~kl 147 (255)
T cd06542 77 -GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP-------TDKL 147 (255)
T ss_pred -CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc-------CCcE
Confidence 3333 2356789999999999999999999999999999854 23788999999999999963 3689
Q ss_pred EEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEe
Q 011487 292 LTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLV 371 (484)
Q Consensus 292 Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~Klv 371 (484)
|++++...... . +.+++.+++|||++|+||.++. ..+. . ......|+|++|++
T Consensus 148 lt~~~~~~~~~-----~---~~~~~~~~vDyv~~~~y~~~~~---~~~~---~-------------~~~~~~g~~~~k~i 200 (255)
T cd06542 148 LTIDGYGQALS-----N---DGEEVSPYVDYVIYQYYGSSSS---STQR---N-------------WNTNSPKIPPEKMV 200 (255)
T ss_pred EEEEecCCchh-----c---CHHHHHHhCCEEEeeccCCCCc---cCCc---c-------------cccccCCCCHHHce
Confidence 99987643322 1 6799999999999999985432 1110 0 11124679999999
Q ss_pred ecCccceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCCCceeEEEeCCEEEEECCHHHHHHHH
Q 011487 372 MGLPLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDATPVAYHSFAGDSWIGYDDVLSIKLKV 451 (484)
Q Consensus 372 LGlp~YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~s~~~y~y~~~~~isydd~~Sl~~K~ 451 (484)
+|+++++.... ....++...+
T Consensus 201 ~~~~~~~~~~~-----------------------------------------------------------~~~~~~~~~A 221 (255)
T cd06542 201 YTESFEEENGG-----------------------------------------------------------NSGSSAEQYA 221 (255)
T ss_pred eeeeeecccCC-----------------------------------------------------------CcchhHHHHH
Confidence 99999863210 1223455566
Q ss_pred HHHHHC-CCcEEEEEecCCCCcchHHHHHHHh
Q 011487 452 QFAKSK-GLGGYFFWAIGQDKDWTLSKQASIA 482 (484)
Q Consensus 452 ~~ak~~-gLgGv~iW~l~~DD~~~ll~a~~~~ 482 (484)
+++.+. +.||+|+|+++.|..-..++++.+.
T Consensus 222 ~~~~~~~~~gG~~~y~~~~dy~~~~~~~~~~~ 253 (255)
T cd06542 222 RWTPAKGGKGGIGTYALDRDYYRPYDSAVSKA 253 (255)
T ss_pred hcCcccCceEEEEEEecCCCccccchhhhhhh
Confidence 666666 8999999999999655666666554
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.92 E-value=1.1e-23 Score=208.06 Aligned_cols=200 Identities=21% Similarity=0.215 Sum_probs=137.2
Q ss_pred EEEEecC-CCCCCCCCCC-CCCccEEEEeeeeeeCCCCE--EEEcCcC-------hHHHHHHHHHHHhhCCCcEEEEEEC
Q 011487 145 KAAYWPS-FNDFPASSID-TSYFTHIYYAFLLPEPKTFK--LNVTLLD-------HAKLLELVGTLRVQNSHIKILLSIG 213 (484)
Q Consensus 145 ~~gY~~~-~~~~~~~~i~-~~~~ThIi~af~~i~~~gg~--l~~~~~~-------~~~~~~~i~~lk~~n~~~KvllSIG 213 (484)
++.||-. ...-++++.- ...++.|+++|+..-..++. +.+...- -..+.+.|+.+|++ ++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEcc
Confidence 4789952 2234444332 24799999999987765332 3333221 13677788888876 899999999
Q ss_pred CCCCCchhhhhhcCCHHHHHHHHHHHHHHHH------------HhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 214 GGGSDPNVFSKMASTKETRAIFINSTIEIAR------------KYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 214 G~~~~~~~f~~l~~~~~~r~~fi~si~~~l~------------~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
||.. ... +.+++.|++|+++|.++.. +++|||||||||++.. .+|..|+++||+.+++.
T Consensus 81 G~~~-~~~----~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~ 151 (280)
T cd02877 81 GAGG-SYS----LSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASD 151 (280)
T ss_pred CCCC-CcC----CCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhcc
Confidence 9986 322 3788999999999988762 5679999999999852 68999999999999753
Q ss_pred hhhcCCCCeEEEEEecccccccccCCCCCcChhhhh-ccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHH
Q 011487 282 ARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN-KYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSW 360 (484)
Q Consensus 282 ~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~-~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~ 360 (484)
. .++++||+|+++... ..+....+. .++|||+||.||..+ |... ...........+.|
T Consensus 152 ~----~~~~~LTaAPq~~~~-------d~~~~~~i~~~~~D~i~vqfYn~~~-------c~~~---~~~~~~~~~~~~~w 210 (280)
T cd02877 152 P----SKKYYLTAAPQCPYP-------DASLGDAIATGLFDFIFVQFYNNPC-------CSYA---SGNASGFNFNWDTW 210 (280)
T ss_pred c----CCceEEEeccccCCc-------chhHHHHHccCccCEEEEEEecCcc-------cccc---ccccchhhhHHHHH
Confidence 1 256999999876322 223345555 499999999999542 1111 01111233455666
Q ss_pred HHcCCCC---CCEeecCccc
Q 011487 361 IQAGVPA---QKLVMGLPLY 377 (484)
Q Consensus 361 ~~~Gvp~---~KlvLGlp~Y 377 (484)
... ++. .||+||||..
T Consensus 211 ~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 211 TSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred HHh-cccCCCceEEEecccC
Confidence 654 555 8999999976
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.90 E-value=1.3e-22 Score=201.67 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=117.4
Q ss_pred CCccEEEEeeeeeeCCCCEEEEcCc---C-hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHH
Q 011487 163 SYFTHIYYAFLLPEPKTFKLNVTLL---D-HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINS 238 (484)
Q Consensus 163 ~~~ThIi~af~~i~~~gg~l~~~~~---~-~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~s 238 (484)
.+|+||+++|+.... +++..+... + ...+.+.++.+|++ |+||+||||||.+ .. +..++..|++|+++
T Consensus 24 ~g~~~v~lAFi~~~~-~~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g-~~----~~~~~~~~~~~~~a 95 (294)
T cd06543 24 TGVKAFTLAFIVASG-GCKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG-TP----LATSCTSADQLAAA 95 (294)
T ss_pred cCCCEEEEEEEEcCC-CCcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC-Cc----cccCcccHHHHHHH
Confidence 699999999998874 446655432 1 34556677888888 6999999999986 22 24478899999999
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhh---HHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhh
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQD---MSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEA 315 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~---~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~ 315 (484)
+.++|++|||||||||||++. ..+ .+++.++|++|++++ +++.|+++++..+.-. ...++++.+
T Consensus 96 ~~~~i~~y~~dgiDfDiE~~~-~~d~~~~~~~~~al~~Lq~~~---------p~l~vs~Tlp~~p~gl---~~~g~~~l~ 162 (294)
T cd06543 96 YQKVIDAYGLTHLDFDIEGGA-LTDTAAIDRRAQALALLQKEY---------PDLKISFTLPVLPTGL---TPDGLNVLE 162 (294)
T ss_pred HHHHHHHhCCCeEEEeccCCc-cccchhHHHHHHHHHHHHHHC---------CCcEEEEecCCCCCCC---ChhHHHHHH
Confidence 999999999999999999975 333 478889999998876 4688999988655431 225567777
Q ss_pred hhc----cCceEEeeeccCCCC
Q 011487 316 INK----YMNWVSPMCFDYHGS 333 (484)
Q Consensus 316 l~~----~vD~v~lm~YD~~g~ 333 (484)
.+. .+|+||||+|||++.
T Consensus 163 ~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 163 AAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHcCCCcceeeeeeecCCCC
Confidence 777 899999999998864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.8e-20 Score=172.68 Aligned_cols=219 Identities=20% Similarity=0.347 Sum_probs=142.7
Q ss_pred CCeEEEEEecCCCC-------------CCCCCCCCCCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcE
Q 011487 141 FRGIKAAYWPSFND-------------FPASSIDTSYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIK 207 (484)
Q Consensus 141 ~~~i~~gY~~~~~~-------------~~~~~i~~~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~K 207 (484)
.+++++|||++|.. ..+++.+ ..++.+.++|..-..+=.+.......+..|++.+.+|.++ |.-
T Consensus 24 ~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~-~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--Gka 100 (332)
T COG3469 24 SNKVLVGYWHNWKSGAADGYQQGSSADIALADTP-RNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--GKA 100 (332)
T ss_pred ccceEEEeeecccccccccccccceeeeEeccCC-cccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--CcE
Confidence 34599999997543 2222332 4666777777543321112222334567888888888877 888
Q ss_pred EEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC--hhhHHHHHHHHHHHHHHhHHhhhhc
Q 011487 208 ILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN--DQDMSNLALLFKQWRTSINQEARIT 285 (484)
Q Consensus 208 vllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~--~~~~~~~~~flk~Lr~~l~~~~~~~ 285 (484)
|+||+||..+..+ +.. ..-++|+++|+.++++|||||+|||.|.... ..++....+++|.+|+..+..+
T Consensus 101 vllsLGGAdghIe-----L~~-~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~G--- 171 (332)
T COG3469 101 VLLSLGGADGHIE-----LKA-GQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQG--- 171 (332)
T ss_pred EEEEccCccceEE-----ecc-chHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcC---
Confidence 9999999876433 333 3478999999999999999999999996432 2334567788888888777654
Q ss_pred CCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHH---
Q 011487 286 NTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQ--- 362 (484)
Q Consensus 286 ~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~--- 362 (484)
+++.|||++.+..-. +|+.+..| +.+|.++.|||+.+.|+..|.-...+..++++- .+...+.+..-+++.
T Consensus 172 --k~f~itMAPEfPYl~-~~gaY~py-in~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~--q~nd~~kesfly~~~~sl 245 (332)
T COG3469 172 --KNFFITMAPEFPYLQ-GWGAYIPY-INELRDYYDFIAPQLYNQGGDGNWVTESNAWIA--QNNDMVKESFLYYLTFSL 245 (332)
T ss_pred --CceEEEecCCCceec-CCcccchH-HHHHhhHHhhhhHHHhcCCCCCCCcCccccccc--cccHHHHHhHHHHhhhhh
Confidence 689999998765544 24334444 689999999999999997664112222223221 111222222222221
Q ss_pred -------cCCCCCCEeecCccc
Q 011487 363 -------AGVPAQKLVMGLPLY 377 (484)
Q Consensus 363 -------~Gvp~~KlvLGlp~Y 377 (484)
..+|.+|+++|||.-
T Consensus 246 anGtr~f~~ipa~k~aiGLPsn 267 (332)
T COG3469 246 ANGTRGFEKIPADKFAIGLPSN 267 (332)
T ss_pred hcCcccceecccceeEEecCCC
Confidence 137899999999953
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.45 E-value=4.5e-12 Score=124.88 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=127.9
Q ss_pred CeEEEEEecCC--C-CCCCCCC-CCCCccEEEEeeeeeeCCCCEE--EEcCc-----C-----hHHHHHHHHHHHhhCCC
Q 011487 142 RGIKAAYWPSF--N-DFPASSI-DTSYFTHIYYAFLLPEPKTFKL--NVTLL-----D-----HAKLLELVGTLRVQNSH 205 (484)
Q Consensus 142 ~~i~~gY~~~~--~-~~~~~~i-~~~~~ThIi~af~~i~~~gg~l--~~~~~-----~-----~~~~~~~i~~lk~~n~~ 205 (484)
+.-+++||-.. + .-.+..- ....++.|+++|+.--+.++.. .+.+. . -..+...|+..+.+ |
T Consensus 26 ~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~--G 103 (568)
T KOG4701|consen 26 QTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSN--G 103 (568)
T ss_pred ccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhc--C
Confidence 34568999622 1 1112211 2357899999998654444333 33221 0 13566677777776 9
Q ss_pred cEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHH-------hC---CCeeEEeecCCCChhhHHHHHHHHHHHH
Q 011487 206 IKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARK-------YG---FDGVDLDWEFPANDQDMSNLALLFKQWR 275 (484)
Q Consensus 206 ~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~-------yg---fDGIDIDwE~p~~~~~~~~~~~flk~Lr 275 (484)
+||||++||..++ ..+++.+..+.|++.+-+..-+ +| +||+|+|+|.. ....|.+|-++||
T Consensus 104 iKVlLSLGG~~Gn-----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g----~~~~ysaLA~~L~ 174 (568)
T KOG4701|consen 104 IKVLLSLGGYNGN-----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKG----TNTAYSALAKRLL 174 (568)
T ss_pred eEEEEeccCcccc-----eeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecC----CcchHHHHHHHHH
Confidence 9999999998763 2378888999999999877543 12 79999999964 2456778889999
Q ss_pred HHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhh-hccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHH
Q 011487 276 TSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAI-NKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTS 354 (484)
Q Consensus 276 ~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l-~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~ 354 (484)
+.|.+. .+++.|+.|+++..... ..+ +.| .+..||+.|+.|+.. .+..-++....+++
T Consensus 175 ~~Fa~~-----~r~yYLsaAPQCP~PD~----~~G---~aL~~~~fDf~~IQFYNN~---------~CS~SsG~~Q~~fD 233 (568)
T KOG4701|consen 175 EIFASD-----PRRYYLSAAPQCPVPDH----TLG---KALSENSFDFLSIQFYNNS---------TCSGSSGSRQSTFD 233 (568)
T ss_pred HHHccC-----CceEEeccCCCCCCCch----hhh---hhhhccccceEEEEeecCC---------CcccccCcccccHH
Confidence 988753 36789999988765441 111 222 256899999999831 11111111123444
Q ss_pred HHHHHHHHcCCCCCC---EeecCccc
Q 011487 355 YGIGSWIQAGVPAQK---LVMGLPLY 377 (484)
Q Consensus 355 ~~v~~~~~~Gvp~~K---lvLGlp~Y 377 (484)
.-+++ .+. +-++| ++||||..
T Consensus 234 sW~~y-a~~-~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 234 AWVEY-AED-SAYNKNTSLFLGLPGH 257 (568)
T ss_pred HHHHH-Hhh-hcccccceEEeeccCC
Confidence 44433 333 66777 99999954
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.61 E-value=4.2e-07 Score=92.53 Aligned_cols=162 Identities=11% Similarity=0.154 Sum_probs=107.5
Q ss_pred HHHHHHHhhCCCcEEEEEEC-CCCCCchhhhhhcCC-HHHHHHHHHHHHHHHHHhCCCeeEEeecCCC-ChhhHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIG-GGGSDPNVFSKMAST-KETRAIFINSTIEIARKYGFDGVDLDWEFPA-NDQDMSNLALL 270 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIG-G~~~~~~~f~~l~~~-~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~-~~~~~~~~~~f 270 (484)
.+++++|++ |+||+-.|- -|.+..+.+..++.+ ++.+..+|+.|+++++.|||||+-||+|... ...+.+++..|
T Consensus 50 ~~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 50 DWINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 466777876 999996663 122225677888888 9999999999999999999999999999876 57889999999
Q ss_pred HHHHHHHhHHhhhhcCCCCeEE-EEEeccccccccc-CCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCC
Q 011487 271 FKQWRTSINQEARITNTSPLLL-TAAVYFASRFTIY-GGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPR 348 (484)
Q Consensus 271 lk~Lr~~l~~~~~~~~~~~~~L-svav~~~~~~~~~-~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~ 348 (484)
+++|++++++.. ++..| -.........-.| ......+. ...+.+|-+. ..|. |..
T Consensus 128 ~~~L~~~~~~~~-----~~~~v~WYDs~t~~G~l~wQn~Ln~~N~-~ff~~~D~~F-lNY~----W~~------------ 184 (339)
T cd06547 128 LRYLKAKLHENV-----PGSLVIWYDSMTEDGKLSWQNELNSKNK-PFFDVCDGIF-LNYW----WTE------------ 184 (339)
T ss_pred HHHHHHHHhhcC-----CCcEEEEEecCCCCCccchhhhhhHHHH-HHHhhhccee-EecC----CCc------------
Confidence 999999998642 23322 2221111000000 00111122 2225566442 2333 432
Q ss_pred CCccHHHHHHHHHHcCCCCCCEeecCccceeeee
Q 011487 349 SNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWK 382 (484)
Q Consensus 349 ~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~ 382 (484)
...+..++.....|..+.+|.+|+=..||...
T Consensus 185 --~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 --ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred --chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 13455666666788999999999999987754
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.01 E-value=2.6e-05 Score=78.62 Aligned_cols=160 Identities=17% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHHHHHhhCCCcEEEEEEC-CCCCCchhhhhhcC-CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-hhHHHHHH
Q 011487 193 LELVGTLRVQNSHIKILLSIG-GGGSDPNVFSKMAS-TKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-QDMSNLAL 269 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIG-G~~~~~~~f~~l~~-~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-~~~~~~~~ 269 (484)
..+++++|++ |+|||=.|- .|++....+.+++. ++.....+|+.|+++++-|||||.-|++|..... ...+++..
T Consensus 45 ~~widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~ 122 (311)
T PF03644_consen 45 AGWIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLID 122 (311)
T ss_dssp HHHHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHH
T ss_pred chhHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHH
Confidence 3577888887 999984331 22223667788888 7788889999999999999999999999987544 68899999
Q ss_pred HHHHHHHHhHHhhhhcCCCCeEEE-EEecccccccccC-CCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCC
Q 011487 270 LFKQWRTSINQEARITNTSPLLLT-AAVYFASRFTIYG-GPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDP 347 (484)
Q Consensus 270 flk~Lr~~l~~~~~~~~~~~~~Ls-vav~~~~~~~~~~-~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~ 347 (484)
|+++|++++++ . ++..|. ...-.....-.|. .....+ ....+.+|-+.+ .|. |.
T Consensus 123 F~~~l~~~~~~-~-----~~~~v~WYDs~t~~G~l~~qn~Ln~~N-~~f~~~~d~iFl-NY~----W~------------ 178 (311)
T PF03644_consen 123 FLKYLRKEAHE-N-----PGSEVIWYDSVTNSGRLSWQNELNDKN-KPFFDVCDGIFL-NYN----WN------------ 178 (311)
T ss_dssp HHHHHHHHHHH-T------T-EEEEES-B-SSSSB---SSS-TTT-GGGBES-SEEEE--S------S------------
T ss_pred HHHHHHHHhhc-C-----CCcEEEEeecCCcCCccchHHHHHhhC-cchhhhcceeeE-ecC----CC------------
Confidence 99999999986 2 222222 1110000000000 000111 112345554432 222 22
Q ss_pred CCCccHHHHHHHHHHcCCCCCCEeecCccceee
Q 011487 348 RSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRT 380 (484)
Q Consensus 348 ~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~ 380 (484)
...++.+++...+.|.++.+|.+|+=..||.
T Consensus 179 --~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 --PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp --HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred --cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 1246777888888899999999999999987
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.93 E-value=8.8e-05 Score=74.94 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEe-ecCCC-----------------------Chhh-------HHHHHHHHHHHH
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLD-WEFPA-----------------------NDQD-------MSNLALLFKQWR 275 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDID-wE~p~-----------------------~~~~-------~~~~~~flk~Lr 275 (484)
..++.|+-+++-+.+++++|.+|||.|| +-++. ...+ +++...|+++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999999999 34431 1122 678999999999
Q ss_pred HHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhh--hccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccH
Q 011487 276 TSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAI--NKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNIST 353 (484)
Q Consensus 276 ~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l--~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~ 353 (484)
+++++.. +.+.+++++....... . .....|.... ..++|+|..|.|-.. .....+ .+
T Consensus 214 ~~ik~~k-----P~v~~sisp~g~~~~~-y-~~~~qD~~~W~~~G~iD~i~Pq~Y~~~-----~~~~~~---------~~ 272 (311)
T PF02638_consen 214 DAIKAIK-----PWVKFSISPFGIWNSA-Y-DDYYQDWRNWLKEGYIDYIVPQIYWSD-----FSHFTA---------PY 272 (311)
T ss_pred HHHHHhC-----CCCeEEEEeecchhhh-h-hheeccHHHHHhcCCccEEEeeecccc-----cchhHH---------HH
Confidence 9998753 7788888775332110 0 1122233333 378999999999631 111111 35
Q ss_pred HHHHHHHHHcCCC-CCCEeecCcccee
Q 011487 354 SYGIGSWIQAGVP-AQKLVMGLPLYGR 379 (484)
Q Consensus 354 ~~~v~~~~~~Gvp-~~KlvLGlp~YG~ 379 (484)
+..+..|.+.-.+ .-+|.+|+.+|-.
T Consensus 273 ~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 273 EQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 6777777765443 3489999999843
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.65 E-value=0.003 Score=63.62 Aligned_cols=165 Identities=18% Similarity=0.262 Sum_probs=103.7
Q ss_pred CCccEEEEeeeeeeCCCCEEEEcCcCh------------HHHHHHHHHHHhhCCCcEEEEEEC-----------------
Q 011487 163 SYFTHIYYAFLLPEPKTFKLNVTLLDH------------AKLLELVGTLRVQNSHIKILLSIG----------------- 213 (484)
Q Consensus 163 ~~~ThIi~af~~i~~~gg~l~~~~~~~------------~~~~~~i~~lk~~n~~~KvllSIG----------------- 213 (484)
..++-|++ .+..+.|.+....... ..+.++++.+|++ |+-++--|-
T Consensus 25 t~lNavVI---DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~--gIY~IARIv~FkD~~la~~~pe~av~ 99 (316)
T PF13200_consen 25 TELNAVVI---DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEH--GIYPIARIVVFKDPVLAEAHPEWAVK 99 (316)
T ss_pred cCCceEEE---EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHC--CCEEEEEEEEecChHHhhhChhhEEE
Confidence 45555553 5666666777643210 3456788888888 676663331
Q ss_pred ---C--CCCC-chhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEee-cCCCC------------hh--hHHHHHHHHH
Q 011487 214 ---G--GGSD-PNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDW-EFPAN------------DQ--DMSNLALLFK 272 (484)
Q Consensus 214 ---G--~~~~-~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDw-E~p~~------------~~--~~~~~~~flk 272 (484)
| |.+. ...|... -+++.++-. -.|++-+.+.|||.|.||+ .+|.. .. -.+.+..||+
T Consensus 100 ~~~G~~w~d~~~~~WvnP-~~~evw~Y~-i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~ 177 (316)
T PF13200_consen 100 TKDGSVWRDNEGEAWVNP-YSKEVWDYN-IDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLA 177 (316)
T ss_pred CCCCCcccCCCCCccCCC-CCHHHHHHH-HHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHH
Confidence 1 1110 1112111 123444444 4577778889999999999 45531 01 2467899999
Q ss_pred HHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCC-CCCCCCCc
Q 011487 273 QWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWE-NFTGLHAA 343 (484)
Q Consensus 273 ~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~-~~~g~~sp 343 (484)
..|++|+. .+..||+.+............-+.++..|+++||+|.-|.|--| |. +..|...|
T Consensus 178 ~a~~~l~~-------~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P 240 (316)
T PF13200_consen 178 YAREELHP-------YGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKP 240 (316)
T ss_pred HHHHHHhH-------cCCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCc
Confidence 99999976 46789999886555421123567789999999999999998755 44 34444443
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.37 E-value=0.0026 Score=58.37 Aligned_cols=116 Identities=11% Similarity=0.181 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHHHHHh-CCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccC
Q 011487 228 TKETRAIFINSTIEIARKY-GFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYG 306 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~y-gfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~ 306 (484)
+++..++..+.+.++-..- ...||.|||... ......|..|+++||++|. .++.||++.-.. +.
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~--t~~L~~Y~~fL~~LR~~LP--------~~~~LSIT~L~d-W~---- 86 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA--TSRLPAYAQFLQQLRQRLP--------PDYRLSITALPD-WL---- 86 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc--ccchHHHHHHHHHHHHhCC--------CCceEeeEEehh-hh----
Confidence 4555666666655555443 579999999874 5568999999999999997 457777775432 22
Q ss_pred CCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccce
Q 011487 307 GPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYG 378 (484)
Q Consensus 307 ~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG 378 (484)
.... .+..|...+|.+.+|+|. |- +..+ +...-+..+.+.. --.-+|+|.||
T Consensus 87 ~~~~-~L~~L~~~VDE~VlQ~yq--Gl------~d~~--------~~~~yl~~l~~l~---~PFriaLp~yG 138 (181)
T PF11340_consen 87 SSPD-WLNALPGVVDELVLQVYQ--GL------FDPP--------NYARYLPRLARLT---LPFRIALPQYG 138 (181)
T ss_pred cCch-hhhhHhhcCCeeEEEeec--CC------CCHH--------HHHHHHHHHhcCC---CCeEEecCcCC
Confidence 1222 478899999999999993 22 1111 2233344444433 45778999999
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=96.74 E-value=0.019 Score=58.82 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=102.0
Q ss_pred HHHHHHhhCCCcEEEEE-ECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 195 LVGTLRVQNSHIKILLS-IGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 195 ~i~~lk~~n~~~KvllS-IGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.+.+|++ |+||+-. |--|......-..++.+.+..+..++.++++.+-.||||=-|+.|.-.+.....++..|++.
T Consensus 116 wtn~AHrH--GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~ 193 (526)
T KOG2331|consen 116 WTNTAHRH--GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSH 193 (526)
T ss_pred ccchhhhc--CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHH
Confidence 33556665 9999954 35565445667788999999999999999999999999999999987666778899999999
Q ss_pred HHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccH
Q 011487 274 WRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNIST 353 (484)
Q Consensus 274 Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~ 353 (484)
|.+++++.. ..++.+-..--.....-.|...-.-.-+..-+.+|-+ .|+|. |... ..
T Consensus 194 Lt~~~~~~~----p~~~ViWYDSV~~~G~L~WQ~eLne~N~~Ffd~cdg~-~~NY~----Wke~--------------~l 250 (526)
T KOG2331|consen 194 LTKVLHSSV----PGGLVIWYDSVTDDGQLHWQNELNEMNRKFFDACDGI-FMNYN----WKEK--------------HL 250 (526)
T ss_pred HHHHHhhcC----CCceEEEEeeeeecCeeehhhhhhhhcchhhhhccee-eeecc----cccc--------------hH
Confidence 999998632 1344443332211111000000000012233566655 56666 3210 11
Q ss_pred HHHHHHHHHcCCCCCCEeecCccceeee
Q 011487 354 SYGIGSWIQAGVPAQKLVMGLPLYGRTW 381 (484)
Q Consensus 354 ~~~v~~~~~~Gvp~~KlvLGlp~YG~~~ 381 (484)
+.. .-++|-.+..+.|||--+||+-
T Consensus 251 ~rs---a~~~~~~r~~v~~GiDVf~Rg~ 275 (526)
T KOG2331|consen 251 ERS---AEQAGDRRHRVFMGIDVFGRGC 275 (526)
T ss_pred HHH---HHhhhhhhhceEEEeEEEeccc
Confidence 221 2245666889999999999863
No 32
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=96.06 E-value=0.21 Score=50.40 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=54.3
Q ss_pred HHHHHHHhhCCCcEEE--EEECCCCCCchhhhh-----------------------hcCCHHHHHHHHHHHHHHHHHhCC
Q 011487 194 ELVGTLRVQNSHIKIL--LSIGGGGSDPNVFSK-----------------------MASTKETRAIFINSTIEIARKYGF 248 (484)
Q Consensus 194 ~~i~~lk~~n~~~Kvl--lSIGG~~~~~~~f~~-----------------------l~~~~~~r~~fi~si~~~l~~ygf 248 (484)
+-++.+|++ |.+|+ +|||-.......|.+ =..+++-|+-+.+. ++.+.+.||
T Consensus 85 ~~i~~Lk~~--g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 85 EEIVRAAAA--GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred HHHHHHHhC--CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 344567765 77887 899986543333222 02355666666665 667778899
Q ss_pred CeeEEeec----CCC-----ChhhHHHHHHHHHHHHHHhHHh
Q 011487 249 DGVDLDWE----FPA-----NDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 249 DGIDIDwE----~p~-----~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
||+.||.- +-. .....+.+.+|+++|.+.+++.
T Consensus 162 DGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 162 DGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred CeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999962 110 1233467889999997777754
No 33
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.93 E-value=0.7 Score=50.45 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCC-CC-Cc-------hhhhh----------hcCCH---HHHHHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGG-GS-DP-------NVFSK----------MASTK---ETRAIFINSTIEIARK 245 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~-~~-~~-------~~f~~----------l~~~~---~~r~~fi~si~~~l~~ 245 (484)
....++++|+++|++ |++||+-+-=. .+ +. ..|.. -..++ ..|+.+++++.-++++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 457899999999998 99999875111 00 00 01110 02234 7888999999999999
Q ss_pred hCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhh
Q 011487 246 YGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEA 282 (484)
Q Consensus 246 ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~ 282 (484)
||+||+-||--..... ..-..|++++++++++..
T Consensus 236 ~~iDGfR~D~~~~~~~---~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 236 YHFDGLRLDAVHAIAD---TSAKHILEELAREVHELA 269 (542)
T ss_pred hCCcEEEEeCHHHhcc---ccHHHHHHHHHHHHHHHC
Confidence 9999999996321111 112578999999887654
No 34
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.61 E-value=1 Score=49.85 Aligned_cols=83 Identities=14% Similarity=0.316 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-----CCCCCC------chhhh----------------h-hcCCHHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI-----GGGGSD------PNVFS----------------K-MASTKETRAIFINSTIE 241 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI-----GG~~~~------~~~f~----------------~-l~~~~~~r~~fi~si~~ 241 (484)
..++++|+++|++ |++||+-+ ++.... ...|. . -..++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5789999999998 99999865 110000 00000 0 12357888999999999
Q ss_pred HHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 242 IARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 242 ~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
++++||+||+-||.-.... ..|++++++++++.
T Consensus 307 W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIHD-------IETMNEIRKALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcCC-------HHHHHHHHHHHHhh
Confidence 9999999999999753211 34778888877654
No 35
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.48 E-value=4.9 Score=41.38 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC--CCCCCch--------------hhhhhcCC---HHHHHHHHHHHHHHHHHhCCCe
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG--GGGSDPN--------------VFSKMAST---KETRAIFINSTIEIARKYGFDG 250 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG--G~~~~~~--------------~f~~l~~~---~~~r~~fi~si~~~l~~ygfDG 250 (484)
..++++++.+|+. |.|+++-+. |...... ...+.+.. .+..+.|++... .+++-||||
T Consensus 77 ~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~-~a~~aGfDg 153 (353)
T cd02930 77 AGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAA-LAREAGYDG 153 (353)
T ss_pred HHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCCCE
Confidence 5677788888887 889887772 2211100 00011111 234455665544 445579999
Q ss_pred eEEee
Q 011487 251 VDLDW 255 (484)
Q Consensus 251 IDIDw 255 (484)
|+|.-
T Consensus 154 Veih~ 158 (353)
T cd02930 154 VEIMG 158 (353)
T ss_pred EEEec
Confidence 99976
No 36
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.41 E-value=5.1 Score=41.09 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=47.5
Q ss_pred ccEEEEeeeeeeCCC----CEEEEcCcC-hHHHHHHHHHHHhhCCCcEEEEEEC--CCCCCch--hh-----h-------
Q 011487 165 FTHIYYAFLLPEPKT----FKLNVTLLD-HAKLLELVGTLRVQNSHIKILLSIG--GGGSDPN--VF-----S------- 223 (484)
Q Consensus 165 ~ThIi~af~~i~~~g----g~l~~~~~~-~~~~~~~i~~lk~~n~~~KvllSIG--G~~~~~~--~f-----~------- 223 (484)
.--|+.....+++.+ +.+.+..+. -..++++++.+|++ |.|+++-|. |...... .. +
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~ 124 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRH 124 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCC
Confidence 444555555555443 122232222 25678888888887 788887763 3211100 00 0
Q ss_pred ----hhcCC---HHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 224 ----KMAST---KETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 224 ----~l~~~---~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
+.+.. .+..+.|++... .+++-|||||+|..-
T Consensus 125 ~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~a 163 (343)
T cd04734 125 RAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAA 163 (343)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccc
Confidence 00111 234556666544 445679999999983
No 37
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=0.47 Score=46.83 Aligned_cols=87 Identities=24% Similarity=0.425 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCeeEEee-cCCCCh---------------hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEeccc
Q 011487 236 INSTIEIARKYGFDGVDLDW-EFPAND---------------QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFA 299 (484)
Q Consensus 236 i~si~~~l~~ygfDGIDIDw-E~p~~~---------------~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~ 299 (484)
--+|++-+.+.|||-|.+|+ .+|.+. +..+.+..||.--|++|. .-+|+.+...
T Consensus 198 NvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DIYG~ 267 (400)
T COG1306 198 NVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADIYGQ 267 (400)
T ss_pred hHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEeecc
Confidence 34678889999999999999 455321 124557778888888774 3567777654
Q ss_pred ccccccCCCCCcChhhhhccCceEEeeeccCCC
Q 011487 300 SRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHG 332 (484)
Q Consensus 300 ~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g 332 (484)
..+...+...+.+++.|+++||+|.-|.|--|-
T Consensus 268 nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 268 NGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred cCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 443222233567899999999999999997653
No 38
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=91.94 E-value=8.6 Score=38.18 Aligned_cols=199 Identities=13% Similarity=0.159 Sum_probs=108.8
Q ss_pred CccEEEE-eeeeeeCCCC--EEEEcCcC----hHHHHHHHHHHHhhCCCcEEE--EEECCCCCC--------------ch
Q 011487 164 YFTHIYY-AFLLPEPKTF--KLNVTLLD----HAKLLELVGTLRVQNSHIKIL--LSIGGGGSD--------------PN 220 (484)
Q Consensus 164 ~~ThIi~-af~~i~~~gg--~l~~~~~~----~~~~~~~i~~lk~~n~~~Kvl--lSIGG~~~~--------------~~ 220 (484)
++++|++ +|...+.+|. .+.|.+.. .+.|.+..=+++.+ .++||. +-+-.+... ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr-~~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTR-AGVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhh-hCCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 6777777 5554443331 23344332 24444444356654 388887 232222110 11
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHh-CCCeeEEeecCCCCh-------------hhHHHHHHHHHHHHHHhHHhhhhcC
Q 011487 221 VFSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWEFPAND-------------QDMSNLALLFKQWRTSINQEARITN 286 (484)
Q Consensus 221 ~f~~l~~~~~~r~~fi~si~~~l~~y-gfDGIDIDwE~p~~~-------------~~~~~~~~flk~Lr~~l~~~~~~~~ 286 (484)
...++---.....+.|..|.+=|..| .||||=|.-.....+ .....+..|..+|++.+++..
T Consensus 109 ~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r---- 184 (294)
T PF14883_consen 109 GYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR---- 184 (294)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC----
Confidence 11111111234456788888888888 899999833311111 123467889999999887653
Q ss_pred CCCeEEEEEecccccccccCCCC--CcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHcC
Q 011487 287 TSPLLLTAAVYFASRFTIYGGPR--GYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQAG 364 (484)
Q Consensus 287 ~~~~~Lsvav~~~~~~~~~~~~~--~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~G 364 (484)
+.+...-.+...+-..+. ... ..++..+.+.-||+.+|++=|... .. . ...++...++...+..
T Consensus 185 -p~lkTARNiya~pvl~P~-se~WfAQnl~~fl~~YD~taimAMPymE~---~~--~-------~~~WL~~Lv~~v~~~p 250 (294)
T PF14883_consen 185 -PDLKTARNIYAEPVLNPE-SEAWFAQNLDDFLKAYDYTAIMAMPYMEQ---AE--D-------PEQWLAQLVDAVAARP 250 (294)
T ss_pred -ccchhhhcccccccCCcc-hhhHHHHhHHHHHHhCCeeheeccchhcc---cc--C-------HHHHHHHHHHHHHhcC
Confidence 222222222222111100 011 235777888899999999887643 11 1 1236677777777776
Q ss_pred CCCCCEeecCccceeeeee
Q 011487 365 VPAQKLVMGLPLYGRTWKL 383 (484)
Q Consensus 365 vp~~KlvLGlp~YG~~~~~ 383 (484)
...+|+|+-|. .++|..
T Consensus 251 ~~l~KtvFELQ--a~dwr~ 267 (294)
T PF14883_consen 251 GGLDKTVFELQ--AVDWRT 267 (294)
T ss_pred CcccceEEEEe--ccCCcc
Confidence 66899999987 556764
No 39
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=91.67 E-value=1.1 Score=51.59 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-------CCCCCC-------chhhhh----------------hcCCHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI-------GGGGSD-------PNVFSK----------------MASTKETRAIFINST 239 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI-------GG~~~~-------~~~f~~----------------l~~~~~~r~~fi~si 239 (484)
..++++|+++|++ |++||+-+ +|.... ...|.+ ...++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3578889999987 99999866 221110 011111 123467788899999
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
.-++++|++||+-||.-... + ..|++++++++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~---~----~~f~~~~~~~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHH---P----KAQMLAAREAIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhhC---C----HHHHHHHHHHHHHh
Confidence 99999999999999985321 1 34566666666653
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.21 E-value=2.4 Score=47.09 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECC-CCC---------Cc--------------hhhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGG-GGS---------DP--------------NVFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG-~~~---------~~--------------~~f~~---l~~~~~~r~~fi~si~ 240 (484)
+...++++|+++|++ |++||+-+-= ... +. ..|.. -..+++.|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 357899999999998 9999987521 000 00 00000 1256889999999999
Q ss_pred HHHHHhCCCeeEEeec-CCC-------------Ch---hhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDWE-FPA-------------ND---QDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE-~p~-------------~~---~~~~~~~~flk~Lr~~l~~~ 281 (484)
-++++|++||+-||-- ... +. .....=..|++++++.+++.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999962 110 00 00122357999999988864
No 41
>PRK10785 maltodextrin glucosidase; Provisional
Probab=90.66 E-value=2.3 Score=47.13 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCC--CCCchh---------------------------------hh------hh-
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGG--GSDPNV---------------------------------FS------KM- 225 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~--~~~~~~---------------------------------f~------~l- 225 (484)
+.+.++++++++|++ |+|||+-+-=. +.+... |. ++
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567899999999998 99999866210 000000 10 11
Q ss_pred cCCHHHHHHHHH----HHHHHHHH-hCCCeeEEeecCC-CChhhHHHHHHHHHHHHHHhHHh
Q 011487 226 ASTKETRAIFIN----STIEIARK-YGFDGVDLDWEFP-ANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 226 ~~~~~~r~~fi~----si~~~l~~-ygfDGIDIDwE~p-~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
..+++.|+.+++ -+..++++ +|+||.-||--.. ........-..|++++|+++++.
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 246788888886 34557886 9999999996321 11111122357899999988764
No 42
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.51 E-value=1.6 Score=48.31 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 011487 232 RAIFINSTIEIA 243 (484)
Q Consensus 232 r~~fi~si~~~l 243 (484)
...|++++++.|
T Consensus 731 se~~iqnLik~l 742 (1102)
T KOG1924|consen 731 SESMIQNLIKHL 742 (1102)
T ss_pred HHHHHHHHHHhC
Confidence 345666665543
No 43
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=90.31 E-value=15 Score=37.55 Aligned_cols=47 Identities=15% Similarity=0.020 Sum_probs=27.8
Q ss_pred CccEEEEeeeeeeCCCC----EEEEcCc-ChHHHHHHHHHHHhhCCCcEEEEEE
Q 011487 164 YFTHIYYAFLLPEPKTF----KLNVTLL-DHAKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 164 ~~ThIi~af~~i~~~gg----~l~~~~~-~~~~~~~~i~~lk~~n~~~KvllSI 212 (484)
.+--|+.....+++.+. .+.+.++ .-..++++.+.+|++ |.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 45555555555655431 2222221 225677888888887 78888776
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=89.90 E-value=1.1 Score=39.44 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhhCCCcEEEE--EECCCCCC---------------c---------hhhhhhcCCHHHHHHHHHHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILL--SIGGGGSD---------------P---------NVFSKMASTKETRAIFINSTIEI 242 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~Kvll--SIGG~~~~---------------~---------~~f~~l~~~~~~r~~fi~si~~~ 242 (484)
.+.+.++++++|++ |++|++ +++ +... . ..+...--+..-++.++..|.++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 46788999999998 888885 444 3110 0 11333444556788888999999
Q ss_pred HHHhCCCeeEEee
Q 011487 243 ARKYGFDGVDLDW 255 (484)
Q Consensus 243 l~~ygfDGIDIDw 255 (484)
+++|++|||-+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 9999999999996
No 45
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.41 E-value=3.6 Score=46.33 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCC----C------CC-ch-------------hhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGG----G------SD-PN-------------VFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~----~------~~-~~-------------~f~~---l~~~~~~r~~fi~si~ 240 (484)
....++.+++++|++ |++||+-+--. . ++ .. .|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 457899999999998 99999875110 0 00 00 1111 1456788999999999
Q ss_pred HHHHHhCCCeeEEee-c------CCC-------C-hhhHH--HHHHHHHHHHHHhHHhh
Q 011487 241 EIARKYGFDGVDLDW-E------FPA-------N-DQDMS--NLALLFKQWRTSINQEA 282 (484)
Q Consensus 241 ~~l~~ygfDGIDIDw-E------~p~-------~-~~~~~--~~~~flk~Lr~~l~~~~ 282 (484)
-+|++|++||+-+|- . +.. + ....+ .-..|+++|++.+++..
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~ 453 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQF 453 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHC
Confidence 999999999999993 1 100 0 00112 23679999999998753
No 46
>PRK12313 glycogen branching enzyme; Provisional
Probab=89.21 E-value=4.1 Score=45.45 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECC-CC---------CCc----------h----hhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGG-GG---------SDP----------N----VFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG-~~---------~~~----------~----~f~~---l~~~~~~r~~fi~si~ 240 (484)
+...++++|+++|++ |++|||-+-- .. .+. . .|.. -..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 457899999999998 9999987511 00 000 0 0100 1246888999999999
Q ss_pred HHHHHhCCCeeEEeec-CC----------------CChhhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDWE-FP----------------ANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE-~p----------------~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-++++||+||+-||-- .. +...+. .-..|++++++.+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 9999999999999931 10 000111 2368999999988864
No 47
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.03 E-value=4.8 Score=44.90 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECC----CC------CC--c------------hhhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGG----GG------SD--P------------NVFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG----~~------~~--~------------~~f~~---l~~~~~~r~~fi~si~ 240 (484)
....++.+|+++|++ |++||+-+-= +. .+ . ..|.. -..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 357899999999998 9999987511 00 00 0 00111 1346789999999999
Q ss_pred HHHHHhCCCeeEEee-cCCC--C------------hhhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDW-EFPA--N------------DQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDw-E~p~--~------------~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-+|++|++||+-+|- .... + ......-..||++|++.+++.
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999994 2210 0 011233467999999988864
No 48
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.97 E-value=3.9 Score=46.41 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEEC-CCC---------CC-c-------------hhhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIG-GGG---------SD-P-------------NVFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIG-G~~---------~~-~-------------~~f~~---l~~~~~~r~~fi~si~ 240 (484)
+...++++|+++|++ |++|||-+- +.. .+ . ..|.. -..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 457899999999998 999998751 100 00 0 00100 2356788999999999
Q ss_pred HHHHHhCCCeeEEee-cCCC-------------C---hhhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDW-EFPA-------------N---DQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDw-E~p~-------------~---~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-+|++||+||+-||- .... + ..+...-..|++++++.+++.
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999994 2110 0 011123468999999998764
No 49
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.68 E-value=14 Score=37.79 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC--CCCCCch----h-----------------hhhhcCC---HHHHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG--GGGSDPN----V-----------------FSKMAST---KETRAIFINSTIEIA 243 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG--G~~~~~~----~-----------------f~~l~~~---~~~r~~fi~si~~~l 243 (484)
..++++.+.+|++ |.|+++-+. |...... . ..+.+.. ....+.|++.. +.+
T Consensus 82 ~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA-~ra 158 (338)
T cd04733 82 EAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA-RLA 158 (338)
T ss_pred HHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-HHH
Confidence 5677888888887 788887653 3221100 0 0011111 12445566544 456
Q ss_pred HHhCCCeeEEeecC
Q 011487 244 RKYGFDGVDLDWEF 257 (484)
Q Consensus 244 ~~ygfDGIDIDwE~ 257 (484)
++.|||||+|.--+
T Consensus 159 ~~aGfDgVeih~a~ 172 (338)
T cd04733 159 QEAGFDGVQIHAAH 172 (338)
T ss_pred HHcCCCEEEEchhh
Confidence 78899999998654
No 50
>PLN02960 alpha-amylase
Probab=88.67 E-value=4.1 Score=46.50 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEEC--------CC---CCCc--------------hhhhh---hcCCHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIG--------GG---GSDP--------------NVFSK---MASTKETRAIFINST 239 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIG--------G~---~~~~--------------~~f~~---l~~~~~~r~~fi~si 239 (484)
+...++.+|+++|++ |++|||-+- ++ .++. ..|.. -..+++.|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 357899999999998 999998861 00 0000 00111 135688999999999
Q ss_pred HHHHHHhCCCeeEEeec-------------------CCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 240 IEIARKYGFDGVDLDWE-------------------FPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE-------------------~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
.-+|++|++||+-+|=- ++ +......-..||++|.+.+++.
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~-n~~~d~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYC-NQYVDRDALIYLILANEMLHQL 601 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccC-CccCCchHHHHHHHHHHHHHhh
Confidence 99999999999999821 11 1111234567888888887753
No 51
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=87.54 E-value=2.7 Score=47.22 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECC----CCC------------Cchhh----------h-------h-hcCCHHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGG----GGS------------DPNVF----------S-------K-MASTKETRAI 234 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG----~~~------------~~~~f----------~-------~-l~~~~~~r~~ 234 (484)
...++++|+++|++ |++||+-+-= ... +...| . . -..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 45789999999998 9999987610 000 00000 0 0 1235778888
Q ss_pred HHHHHHHHHHHhCCCeeEEeecCCCCh--hhHHHHHHHHHHHHH
Q 011487 235 FINSTIEIARKYGFDGVDLDWEFPAND--QDMSNLALLFKQWRT 276 (484)
Q Consensus 235 fi~si~~~l~~ygfDGIDIDwE~p~~~--~~~~~~~~flk~Lr~ 276 (484)
+++++.-++++||+||+-||.-..... ........|+++|++
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 899999999999999999997432111 111224566777776
No 52
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=87.36 E-value=2 Score=46.80 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEE--EECCCCCC---------------ch-----------------hhhhhcCCHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILL--SIGGGGSD---------------PN-----------------VFSKMASTKETRAIF 235 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~Kvll--SIGG~~~~---------------~~-----------------~f~~l~~~~~~r~~f 235 (484)
..+++.|+++|+. |.|.|. .|-|...+ .. .+.. -.++.-|.-+
T Consensus 170 ~~Vk~yI~~ah~~--Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~d-P~N~~WQ~yI 246 (559)
T PF13199_consen 170 STVKDYINAAHKY--GMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMD-PGNPEWQNYI 246 (559)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB--TT-HHHHHHH
T ss_pred HHHHHHHHHHHHc--CcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEec-CCCHHHHHHH
Confidence 6788999999988 788873 33321110 00 0111 3567889999
Q ss_pred HHHHHHHHHHhCCCeeEEeecC--------CCChh--hHHHHHHHHHHHHHHhH
Q 011487 236 INSTIEIARKYGFDGVDLDWEF--------PANDQ--DMSNLALLFKQWRTSIN 279 (484)
Q Consensus 236 i~si~~~l~~ygfDGIDIDwE~--------p~~~~--~~~~~~~flk~Lr~~l~ 279 (484)
++++.+.++..||||+.||=-. -+... -...|..||+++++++.
T Consensus 247 ~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 247 INQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp HHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999532 12222 26789999999999984
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=86.59 E-value=4.9 Score=46.59 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEEE-------CCCCCC--------chhhhh----------------hcCCHHHHHHHHHHH
Q 011487 191 KLLELVGTLRVQNSHIKILLSI-------GGGGSD--------PNVFSK----------------MASTKETRAIFINST 239 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~KvllSI-------GG~~~~--------~~~f~~----------------l~~~~~~r~~fi~si 239 (484)
.++++|+++|++ |++||+-+ +|..+. ...|.. .....--|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478889999887 99999876 111000 011111 012245678889999
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHH
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWR 275 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr 275 (484)
.-++++|++||.-||.-............+.|++|.
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~ 580 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLT 580 (970)
T ss_pred HHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHh
Confidence 999999999999999965433333333333344443
No 54
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.79 E-value=4.6 Score=47.66 Aligned_cols=65 Identities=17% Similarity=0.382 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECC-CCC--------Cchhhh---------------h-hcCCHHHHHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGG-GGS--------DPNVFS---------------K-MASTKETRAIFINSTIEIAR 244 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG-~~~--------~~~~f~---------------~-l~~~~~~r~~fi~si~~~l~ 244 (484)
..++++|+++|++ |++|||-|-= ... ....|. . -..++..|+-+++++.-+++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5689999999998 9999987511 000 000000 0 12346778889999999999
Q ss_pred HhCCCeeEEeec
Q 011487 245 KYGFDGVDLDWE 256 (484)
Q Consensus 245 ~ygfDGIDIDwE 256 (484)
+|++||+-||.-
T Consensus 633 ey~VDGFRfDl~ 644 (1111)
T TIGR02102 633 EFKVDGFRFDMM 644 (1111)
T ss_pred hcCCcEEEEecc
Confidence 999999999974
No 55
>PRK03705 glycogen debranching enzyme; Provisional
Probab=85.28 E-value=4.5 Score=45.23 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECC-CCC----C-----------ch-----------hhh----h-hcCCHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGG-GGS----D-----------PN-----------VFS----K-MASTKETRAIFIN 237 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG-~~~----~-----------~~-----------~f~----~-l~~~~~~r~~fi~ 237 (484)
..++++|+++|++ |+|||+-+-= ... . .. .+. . -..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4789999999988 9999987611 000 0 00 000 0 1246788999999
Q ss_pred HHHHHHHHhCCCeeEEeec
Q 011487 238 STIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 238 si~~~l~~ygfDGIDIDwE 256 (484)
++.-++++||+||+-||.-
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999974
No 56
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=85.03 E-value=18 Score=33.01 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCccEEEEeeeeeeCCCC---EE---EEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHH
Q 011487 163 SYFTHIYYAFLLPEPKTF---KL---NVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFI 236 (484)
Q Consensus 163 ~~~ThIi~af~~i~~~gg---~l---~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi 236 (484)
-++++||+-+........ .+ .......+.+..+++++.+. |+||++.++-. ...|.+ .+.+....+.
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~---~~~w~~--~~~~~~~~~~ 104 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD---PDYWDQ--GDLDWEAERN 104 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC---chhhhc--cCHHHHHHHH
Confidence 479999988766542110 01 00111235667777777766 99999999854 334442 5555554555
Q ss_pred HHHHHHHHH-hC----CCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 237 NSTIEIARK-YG----FDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 237 ~si~~~l~~-yg----fDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
+.|++-+.+ || |.|--|-.|.... ..+-..+++.|++.+++.
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~~~---~~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEIDDY---NWNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccCCc---ccchHHHHHHHHHHHHHh
Confidence 555544433 54 9999999995422 233355566666666654
No 57
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=84.70 E-value=7.4 Score=38.63 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh------hh
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND------QD 263 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~------~~ 263 (484)
+.+.+.+...+....+..++++|+|.. . +.++ .+++.+.++|+|+|+|++--|... .+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~--~-------------~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~ 146 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS--K-------------EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQD 146 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC--H-------------HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccC
Confidence 444444444443324788999999852 1 2222 245566778999999999765321 23
Q ss_pred HHHHHHHHHHHHHHh
Q 011487 264 MSNLALLFKQWRTSI 278 (484)
Q Consensus 264 ~~~~~~flk~Lr~~l 278 (484)
.+.+.++++++|+++
T Consensus 147 ~~~~~eiv~~vr~~~ 161 (289)
T cd02810 147 PEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHHHcc
Confidence 445566677777654
No 58
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.26 E-value=1.5 Score=45.80 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEeecC--CC----------------------Chh-----hHHHHHHHHHHHHHHhH
Q 011487 229 KETRAIFINSTIEIARKYGFDGVDLDWEF--PA----------------------NDQ-----DMSNLALLFKQWRTSIN 279 (484)
Q Consensus 229 ~~~r~~fi~si~~~l~~ygfDGIDIDwE~--p~----------------------~~~-----~~~~~~~flk~Lr~~l~ 279 (484)
++.|+-..+-+++++++|..|||.||--. +. +.. -+++..+|++++...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56677777888999999999999999632 11 011 14678899999999998
Q ss_pred HhhhhcCCCCeEEEEEe-cccccccccCCCCCcC--------hhhhhccCceEEeeeccC
Q 011487 280 QEARITNTSPLLLTAAV-YFASRFTIYGGPRGYP--------IEAINKYMNWVSPMCFDY 330 (484)
Q Consensus 280 ~~~~~~~~~~~~Lsvav-~~~~~~~~~~~~~~~d--------~~~l~~~vD~v~lm~YD~ 330 (484)
+. |++..+++++ ...... .-.|+ +.+ ..++|++.+|.|=-
T Consensus 261 av-----Kp~v~~svsp~n~~~~~-----~f~y~~~~qDw~~Wv~-~G~iD~l~pqvYr~ 309 (418)
T COG1649 261 AV-----KPNVKFSVSPFNPLGSA-----TFAYDYFLQDWRRWVR-QGLIDELAPQVYRT 309 (418)
T ss_pred hh-----CCCeEEEEccCCCCCcc-----ceehhhhhhhHHHHHH-cccHhhhhhhhhcc
Confidence 74 4788888887 211110 01221 233 46899999999853
No 59
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=84.02 E-value=21 Score=37.19 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC---CCCCCchh--------------------hhhhcCCH----HHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG---GGGSDPNV--------------------FSKMASTK----ETRAIFINSTIEI 242 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG---G~~~~~~~--------------------f~~l~~~~----~~r~~fi~si~~~ 242 (484)
..++++++.+|++ |.|+++-+. |....... ..+.+ +. +.++.|++.. ..
T Consensus 83 ~~~k~l~davh~~--G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~m-t~~eI~~ii~~f~~AA-~r 158 (382)
T cd02931 83 RTAKEMTERVHAY--GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCREL-TTEEVETFVGKFGESA-VI 158 (382)
T ss_pred HHHHHHHHHHHHc--CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcC-CHHHHHHHHHHHHHHH-HH
Confidence 5678888888887 889998872 42211100 00111 22 3445555543 45
Q ss_pred HHHhCCCeeEEee
Q 011487 243 ARKYGFDGVDLDW 255 (484)
Q Consensus 243 l~~ygfDGIDIDw 255 (484)
+++-|||||+|.-
T Consensus 159 a~~AGfDgVEih~ 171 (382)
T cd02931 159 AKEAGFDGVEIHA 171 (382)
T ss_pred HHHcCCCEEEEec
Confidence 5567999999997
No 60
>PLN03244 alpha-amylase; Provisional
Probab=83.67 E-value=11 Score=42.61 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCC----C---------CCc-hhhh--------------hhcCCHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGG----G---------SDP-NVFS--------------KMASTKETRAIFINST 239 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~----~---------~~~-~~f~--------------~l~~~~~~r~~fi~si 239 (484)
....++.+|+++|++ |++|||-+--. + ++. ..|. --...++.|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 357899999999998 99999876211 0 000 0111 0123567888999999
Q ss_pred HHHHHHhCCCeeEEe
Q 011487 240 IEIARKYGFDGVDLD 254 (484)
Q Consensus 240 ~~~l~~ygfDGIDID 254 (484)
.-+|++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999999
No 61
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=82.80 E-value=11 Score=41.04 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEee-cCCC-----ChhhHHHHHHHHHHHHHHhHHh
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDW-EFPA-----NDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDw-E~p~-----~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
.+++.|+.+++.+..+++ +|+||+-||- .+.. ...+...-..|++++++.+++.
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 457788888887777775 8999999995 3221 0011112246788888888653
No 62
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.51 E-value=32 Score=35.40 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEEC--CCCCCch-----------h---------hhhhcCC---HHHHHHHHHHHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIG--GGGSDPN-----------V---------FSKMAST---KETRAIFINSTIEIA 243 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIG--G~~~~~~-----------~---------f~~l~~~---~~~r~~fi~si~~~l 243 (484)
-..++++++.+|++ |.|+++-+. |...... . ..+.++. .+-.+.|++... .+
T Consensus 77 i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~-~a 153 (353)
T cd04735 77 IPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATR-RA 153 (353)
T ss_pred hHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 36788888999987 788887762 2211110 0 0011111 234455665543 45
Q ss_pred HHhCCCeeEEeec
Q 011487 244 RKYGFDGVDLDWE 256 (484)
Q Consensus 244 ~~ygfDGIDIDwE 256 (484)
++-|||||+|..-
T Consensus 154 ~~aGfDgVeih~a 166 (353)
T cd04735 154 IEAGFDGVEIHGA 166 (353)
T ss_pred HHcCCCEEEEccc
Confidence 5689999999863
No 63
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=82.11 E-value=13 Score=42.14 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCC-----------CCC---chhhh-----------h-h--cCCHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGG-----------GSD---PNVFS-----------K-M--ASTKETRAIFINST 239 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~-----------~~~---~~~f~-----------~-l--~~~~~~r~~fi~si 239 (484)
+...++++|+++|++ |++||+-+--. ..+ ...|. . . ..+++.|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 457799999999998 99999875110 000 01111 0 0 23567888899999
Q ss_pred HHHHHHhCCCeeEEee
Q 011487 240 IEIARKYGFDGVDLDW 255 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDw 255 (484)
.-++++|++||+-||-
T Consensus 376 ~~Wl~ey~IDGfRfDa 391 (758)
T PLN02447 376 RWWLEEYKFDGFRFDG 391 (758)
T ss_pred HHHHHHhCcccccccc
Confidence 9999999999999993
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.97 E-value=13 Score=44.44 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECC-------CC---CCc--------------hhhhh---hcCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGG-------GG---SDP--------------NVFSK---MASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG-------~~---~~~--------------~~f~~---l~~~~~~r~~fi~si~ 240 (484)
+...++.+|+++|++ |++||+-+-= |. .+. ..|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 457899999999998 9999987511 10 000 00100 1356788999999999
Q ss_pred HHHHHhCCCeeEEeecCCC--------------C---hhhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDWEFPA--------------N---DQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE~p~--------------~---~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-++++|++||+-+|--... + ..+...-..||++|.+.+++.
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999973110 0 001123468999999988764
No 65
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.83 E-value=11 Score=38.18 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=26.4
Q ss_pred CccEEEEeeeeeeCCCC----EEEEcC-cChHHHHHHHHHHHhhCCCcEEEEEE
Q 011487 164 YFTHIYYAFLLPEPKTF----KLNVTL-LDHAKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 164 ~~ThIi~af~~i~~~gg----~l~~~~-~~~~~~~~~i~~lk~~n~~~KvllSI 212 (484)
..--|+.....+++.+. ...+.+ ..-..++++++.+|++ |.|+++-+
T Consensus 46 g~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 46 GVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 34455665555655441 122222 1225677888888887 77777554
No 66
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=81.49 E-value=18 Score=37.10 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=50.2
Q ss_pred EEEEcCcChHHH--HHHHHHHHhhCCCcEEEEEECCCCC------C-----------------------------chhhh
Q 011487 181 KLNVTLLDHAKL--LELVGTLRVQNSHIKILLSIGGGGS------D-----------------------------PNVFS 223 (484)
Q Consensus 181 ~l~~~~~~~~~~--~~~i~~lk~~n~~~KvllSIGG~~~------~-----------------------------~~~f~ 223 (484)
..++....-... +++++.||++ |+||++.|--.-. + ...+-
T Consensus 55 ~f~~d~~~FPdp~~~~mi~~L~~~--G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~ 132 (339)
T cd06602 55 DFTLDPVRFPGLKMPEFVDELHAN--GQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFP 132 (339)
T ss_pred ceecccccCCCccHHHHHHHHHHC--CCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCc
Confidence 444444322333 7889999987 8999887721100 0 11122
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 224 KMASTKETRAIFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 224 ~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
+ ..+++.|+=+.+.+.+++.++|+||+=+|+-.+
T Consensus 133 D-ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 133 D-FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred C-CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 2 467888888888888889999999999998655
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.48 E-value=10 Score=40.72 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHH
Q 011487 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~ 280 (484)
+++-|+.+++.+.-+++++|+||+-||--.-.. . .|++++++++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~---~----~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID---A----WFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC---H----HHHHHHHHHHHH
Confidence 577788888877777777999999999743212 2 355555555543
No 68
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=80.90 E-value=33 Score=35.59 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=48.4
Q ss_pred CccEEEEeeeeeeCCCC-----EEEEcC-cChHHHHHHHHHHHhhCCCcEEEEEE--CCCCCCc----------hh----
Q 011487 164 YFTHIYYAFLLPEPKTF-----KLNVTL-LDHAKLLELVGTLRVQNSHIKILLSI--GGGGSDP----------NV---- 221 (484)
Q Consensus 164 ~~ThIi~af~~i~~~gg-----~l~~~~-~~~~~~~~~i~~lk~~n~~~KvllSI--GG~~~~~----------~~---- 221 (484)
.+--|+.....+.+.+. .+.+.+ ..-..++++++.+|++ |.|+++-+ +|..... ..
T Consensus 51 G~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~ 128 (370)
T cd02929 51 GWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSE 128 (370)
T ss_pred CceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCC
Confidence 44555566555655441 111211 1225677888888887 88988776 2221100 00
Q ss_pred -------hhhhcCCH---HHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 222 -------FSKMASTK---ETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 222 -------f~~l~~~~---~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
..+.+... +..+.|++.. ..+++-|||||+|.--+
T Consensus 129 ~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 129 FPTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 00111111 3445666644 45566799999998765
No 69
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=80.17 E-value=13 Score=37.39 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeEEeecCCCCh-hhHHHHH
Q 011487 191 KLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG-FDGVDLDWEFPAND-QDMSNLA 268 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg-fDGIDIDwE~p~~~-~~~~~~~ 268 (484)
.+..+++.++++ +..++..+-.+..-.. .-+.+.-+.+.+.|++-|++.| +|||-|+.-.-... ...+.=.
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P~G-----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG 118 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEPGG-----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEG 118 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-SEE------B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecCCC-----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchH
Confidence 445677777776 7888877744432111 3456778889999999999986 99999999754311 1112234
Q ss_pred HHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCC
Q 011487 269 LLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPR 348 (484)
Q Consensus 269 ~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~ 348 (484)
.||+++|+.++ ++..|.+++-...+. -+++.+.+|.+.. |..+ |+.-.+
T Consensus 119 ~Ll~rvR~~vG--------p~vpI~~tlDlHaNv----------s~~mv~~ad~~~~--yrty--------PH~D~~--- 167 (292)
T PF07364_consen 119 DLLRRVRAIVG--------PDVPIAATLDLHANV----------SPRMVEAADIIVG--YRTY--------PHIDMY--- 167 (292)
T ss_dssp HHHHHHHHHHT--------TTSEEEEEE-TT--------------HHHHHH-SEEEE-----S--------S---HH---
T ss_pred HHHHHHHHHhC--------CCCeEEEEeCCCCCc----------cHHHHHhCCEEEE--cCCC--------CccCHH---
Confidence 68999999997 456666666433332 3788889997754 4322 222111
Q ss_pred CCccHHHHHHHHH---HcCCCCCCEeecCccce
Q 011487 349 SNISTSYGIGSWI---QAGVPAQKLVMGLPLYG 378 (484)
Q Consensus 349 ~~~~~~~~v~~~~---~~Gvp~~KlvLGlp~YG 378 (484)
..-..+++.+. +.++.|-+...-+|+-.
T Consensus 168 --etg~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 168 --ETGERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp --HHHHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred --HHHHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 12233344333 45566777666666554
No 70
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=80.15 E-value=3.4 Score=42.42 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=57.6
Q ss_pred HHHHHHHhhCCCcEEEEEECC----CCCCchhhhhhcCC-HHHHHHHHHHHHHHHHHhCCCeeEEeecCCC-ChhhHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGG----GGSDPNVFSKMAST-KETRAIFINSTIEIARKYGFDGVDLDWEFPA-NDQDMSNL 267 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG----~~~~~~~f~~l~~~-~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~-~~~~~~~~ 267 (484)
..|+++|+. |+.|+-.|-= .+++.+.+..|+.. .+-.--|++.++++.+-|||||--|+=|-.+ .....+++
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 366777765 8988865511 11225666666543 3444568999999999999999999998654 35667888
Q ss_pred HHHHHHHHHH
Q 011487 268 ALLFKQWRTS 277 (484)
Q Consensus 268 ~~flk~Lr~~ 277 (484)
.+||..+++.
T Consensus 209 ~~f~ly~ke~ 218 (553)
T COG4724 209 RQFMLYSKEY 218 (553)
T ss_pred HHHHHHHHhc
Confidence 8888877754
No 71
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=80.13 E-value=7.4 Score=43.49 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh------h------------------------------hHHHHHHHH
Q 011487 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPAND------Q------------------------------DMSNLALLF 271 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~------~------------------------------~~~~~~~fl 271 (484)
+++.|+...+-+.++.+.|.||||-||-+-.-++ . ....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566655555556666667999999987532111 0 012356788
Q ss_pred HHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCC--CCcChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCC
Q 011487 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGP--RGYPIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRS 349 (484)
Q Consensus 272 k~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~--~~~d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~ 349 (484)
.+|++++++... +.+...-.+....-..+. .. -..++..+.+..||+.+|++=|... ...+.+
T Consensus 519 ~~l~~~v~~~~~----~~~~tarni~a~~~l~p~-~e~w~aQ~l~~~~~~yD~~a~mampyme~---~~~~~~------- 583 (671)
T PRK14582 519 LELSARVKAIRG----PQVKTARNIFALPVIQPE-SEAWFAQNLDDFLKSYDWTAPMAMPLMEG---VAEKSS------- 583 (671)
T ss_pred HHHHHHHHhhcC----ccceeeccccccccCChh-HHHHHHhHHHHHHhhcchhhhhcchhhhc---cCcccH-------
Confidence 888888876421 122222222222111000 01 1235678888999999999665532 221111
Q ss_pred CccHHHHHHHHHHcCCCCCCEeecCccceeeee
Q 011487 350 NISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWK 382 (484)
Q Consensus 350 ~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~ 382 (484)
..++...++...+.-...+|+|+-|. .++|.
T Consensus 584 ~~wl~~l~~~v~~~~~~~~k~vfelq--~~dw~ 614 (671)
T PRK14582 584 DAWLIQLVNQVKNIPGALDKTIFELQ--ARDWQ 614 (671)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEee--ccccc
Confidence 23566666665554456799999887 45675
No 72
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=80.01 E-value=8 Score=39.21 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=56.7
Q ss_pred ccEEEEeeeeeeCCCC--EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECC----------------------------
Q 011487 165 FTHIYYAFLLPEPKTF--KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGG---------------------------- 214 (484)
Q Consensus 165 ~ThIi~af~~i~~~gg--~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG---------------------------- 214 (484)
|+.|++..-... +.+ ..++....-....++++.||++ |+||++.+--
T Consensus 40 ~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~ 116 (319)
T cd06591 40 LDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVT 116 (319)
T ss_pred ccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeee
Confidence 566665532222 223 5555543323457889999988 8999886611
Q ss_pred --CCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 215 --GGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 215 --~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
|.+ ...+-+ ..+++.|+-|.+.+.+.+.++|+||+=+|.-.
T Consensus 117 ~~w~g-~~~~~D-ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 117 MQFGG-NTRFYD-ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred eeCCC-CccccC-CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 000 112222 46778888899999999999999999999944
No 73
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.84 E-value=61 Score=33.16 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCch-----------------hhhhhcCC---HHHHHHHHHHHHHHHHHhCCC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPN-----------------VFSKMAST---KETRAIFINSTIEIARKYGFD 249 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~-----------------~f~~l~~~---~~~r~~fi~si~~~l~~ygfD 249 (484)
..++++++++|++ |.|+++-+...+.... ...+.++. .+..+.|++.. ..+++-|||
T Consensus 81 ~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfD 157 (337)
T PRK13523 81 EGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGFD 157 (337)
T ss_pred HHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCC
Confidence 5677888888886 8899887732211000 00011111 13445566544 455667999
Q ss_pred eeEEeecC---------CCC----h---hhHHHHHHHHHHHHHHhHH
Q 011487 250 GVDLDWEF---------PAN----D---QDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 250 GIDIDwE~---------p~~----~---~~~~~~~~flk~Lr~~l~~ 280 (484)
||+|.--+ |.. + ...+|-..|+.++-+++++
T Consensus 158 gVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~ 204 (337)
T PRK13523 158 VIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKE 204 (337)
T ss_pred EEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99998753 210 1 1245555666666666554
No 74
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=77.70 E-value=82 Score=31.65 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=28.9
Q ss_pred HhhCCCcEEEEEECC---CCC-----CchhhhhhcCCHHHHH---HHHHHHHHHHHHhCCCeeEEeecCCC
Q 011487 200 RVQNSHIKILLSIGG---GGS-----DPNVFSKMASTKETRA---IFINSTIEIARKYGFDGVDLDWEFPA 259 (484)
Q Consensus 200 k~~n~~~KvllSIGG---~~~-----~~~~f~~l~~~~~~r~---~fi~si~~~l~~ygfDGIDIDwE~p~ 259 (484)
|+++.|+|||+-+.= |.+ .+..|..+ +-.+..+ .+-+.+++-+++ .||++||-..+
T Consensus 112 RAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l-~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQVG 178 (403)
T COG3867 112 RAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENL-NFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQVG 178 (403)
T ss_pred HHHhcCcEEEeeccchhhccChhhcCCcHHhhhc-CHHHHHHHHHHHHHHHHHHHHH---cCCCccceEec
Confidence 445669999998853 221 02222222 2222222 234444445555 67889986544
No 75
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.79 E-value=29 Score=37.98 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeEEeec-CCCC---------------hhhHHHHHHHHHHHHHHhHH
Q 011487 228 TKETRAIFINSTIEIARKYGFDGVDLDWE-FPAN---------------DQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~ygfDGIDIDwE-~p~~---------------~~~~~~~~~flk~Lr~~l~~ 280 (484)
+++-|+.+.+.+.-++ ++|+||.-||-- +... -.+......|++++|+.+..
T Consensus 168 np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 168 NPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred CHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 5677777776555555 589999999953 1110 01234577899999988753
No 76
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=75.84 E-value=61 Score=31.47 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLA 268 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~ 268 (484)
+..+++.++.+|++ ++ .++.||+- |.. ...+.-++..++.++++|||.|+|.--.. +-..+...
T Consensus 40 ~~~l~eki~la~~~--~V--~v~~GGtl-----~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~--~i~~~~~~ 103 (237)
T TIGR03849 40 RDIVKEKIEMYKDY--GI--KVYPGGTL-----FEI-----AHSKGKFDEYLNECDELGFEAVEISDGSM--EISLEERC 103 (237)
T ss_pred HHHHHHHHHHHHHc--CC--eEeCCccH-----HHH-----HHHhhhHHHHHHHHHHcCCCEEEEcCCcc--CCCHHHHH
Confidence 34677777777766 44 56677752 222 23446778888999999999999985432 12234444
Q ss_pred HHHHHHHH
Q 011487 269 LLFKQWRT 276 (484)
Q Consensus 269 ~flk~Lr~ 276 (484)
++|+.+++
T Consensus 104 rlI~~~~~ 111 (237)
T TIGR03849 104 NLIERAKD 111 (237)
T ss_pred HHHHHHHh
Confidence 55555553
No 77
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.71 E-value=84 Score=32.52 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC--CCCCCchh--------------------hhhhcCC---HHHHHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG--GGGSDPNV--------------------FSKMAST---KETRAIFINSTIEIAR 244 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG--G~~~~~~~--------------------f~~l~~~---~~~r~~fi~si~~~l~ 244 (484)
..++++++.+|++ |.|+++-+. |....... ..+.++. .+..+.|++.. ..++
T Consensus 78 ~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~a~ 154 (361)
T cd04747 78 AGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-ADAR 154 (361)
T ss_pred HHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HHHH
Confidence 5677788888887 889888772 21110000 0011111 12344555533 4556
Q ss_pred HhCCCeeEEeecC---------CCC----h---hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEec
Q 011487 245 KYGFDGVDLDWEF---------PAN----D---QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVY 297 (484)
Q Consensus 245 ~ygfDGIDIDwE~---------p~~----~---~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~ 297 (484)
+-|||||+|.--+ |.. + ..-+|-..|+.++-+++++.- | +++.|.+-+.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v---G-~d~~v~vRis 219 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV---G-PDFPIILRFS 219 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc---C-CCCeEEEEEC
Confidence 6799999999765 211 1 124555566666666555432 1 4566666554
No 78
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=74.96 E-value=88 Score=32.33 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI 212 (484)
..++++.+++|++ |.|+++-+
T Consensus 79 ~~~~~lad~vH~~--Ga~i~~QL 99 (362)
T PRK10605 79 AAWKKITAGVHAE--GGHIAVQL 99 (362)
T ss_pred HHHHHHHHHHHhC--CCEEEEec
Confidence 5677888888887 88999877
No 79
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=74.93 E-value=89 Score=30.90 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHH-HHHHHHHHHhCCCeeEEee---cCCC-ChhhH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFI-NSTIEIARKYGFDGVDLDW---EFPA-NDQDM 264 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi-~si~~~l~~ygfDGIDIDw---E~p~-~~~~~ 264 (484)
..+..+. .++++. +.||++.| |-.+ + +. .... .-+.+++..++.|-|+.=. |-.. ++...
T Consensus 87 n~le~v~-pAa~~~-g~kv~lGi--w~td-d-----~~-----~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~ta 151 (305)
T COG5309 87 NTLENVL-PAAEAS-GFKVFLGI--WPTD-D-----IH-----DAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTA 151 (305)
T ss_pred hhhhhhH-HHHHhc-CceEEEEE--eecc-c-----hh-----hhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCH
Confidence 3444443 344443 68888877 4321 1 11 1111 3445666667766554433 3221 23446
Q ss_pred HHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccC
Q 011487 265 SNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDY 330 (484)
Q Consensus 265 ~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~ 330 (484)
..+.+-|...|.++.+.+. .+.+.|+..+ ....+-.+|.++.|||.+-.+-|
T Consensus 152 sql~~~I~~vrsav~~agy----~gpV~T~dsw----------~~~~~np~l~~~SDfia~N~~aY 203 (305)
T COG5309 152 SQLIEYIDDVRSAVKEAGY----DGPVTTVDSW----------NVVINNPELCQASDFIAANAHAY 203 (305)
T ss_pred HHHHHHHHHHHHHHHhcCC----CCceeecccc----------eeeeCChHHhhhhhhhhcccchh
Confidence 7788889999999985431 2223332211 12222478889999987666555
No 80
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=74.74 E-value=8.7 Score=42.54 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCcEEEE---EECCCCCCchhhhhhcCCHHHHHH-HHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILL---SIGGGGSDPNVFSKMASTKETRAI-FINSTIEIARKYGFDGVDLDWEFPANDQDMSNLAL 269 (484)
Q Consensus 194 ~~i~~lk~~n~~~Kvll---SIGG~~~~~~~f~~l~~~~~~r~~-fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~ 269 (484)
.+++++|++||++|+.+ +.=||-++...+ -..+...-.. .++-|...-+.| |+||||-.+- .++..=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~--~~~~~~~~a~Y~~~wl~ga~~~~---gl~idYvg~~--NEr~~~~~ 188 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNW--PYDNPQLTAYYVVSWLLGAKKTH---GLDIDYVGIW--NERGFDVN 188 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGTTSS---TTSSHHHHHHHHHHHHHHHHHHH--------EE-S---TTS---HH
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccCCCCC--cccchhhhhHHHHHHHHHHHHHh---CCCceEechh--hccCCChh
Confidence 46789999999999984 333443211101 1112222222 233333333554 5678886542 23333457
Q ss_pred HHHHHHHHhHHhh
Q 011487 270 LFKQWRTSINQEA 282 (484)
Q Consensus 270 flk~Lr~~l~~~~ 282 (484)
.+|.||.+|++.+
T Consensus 189 ~ik~lr~~l~~~g 201 (669)
T PF02057_consen 189 YIKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc
Confidence 8999999998765
No 81
>PHA03247 large tegument protein UL36; Provisional
Probab=73.28 E-value=20 Score=45.33 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCCCCCCC
Q 011487 46 TAMPPDHPWPAPVPPSP 62 (484)
Q Consensus 46 ~~~~~~~~~~~~~~~~~ 62 (484)
+-+||.|+++++.|+.|
T Consensus 2707 ~P~P~p~~~~pa~P~pp 2723 (3151)
T PHA03247 2707 TPEPAPHALVSATPLPP 2723 (3151)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 45666666766666665
No 82
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=73.18 E-value=49 Score=34.31 Aligned_cols=131 Identities=16% Similarity=0.243 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCC-----Cc-----------------hhhhhhcCCH---HHHHHHHHHHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGS-----DP-----------------NVFSKMASTK---ETRAIFINSTIEIA 243 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~-----~~-----------------~~f~~l~~~~---~~r~~fi~si~~~l 243 (484)
-..++++.+++|++ |.|+++-|...+. .. ....+.+... +.++.|++.... .
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~r-A 158 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARR-A 158 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHH-H
Confidence 35678888888887 7899987743321 00 0011112221 233445444333 3
Q ss_pred HHhCCCeeEEeecCCC-------------Ch---hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCC
Q 011487 244 RKYGFDGVDLDWEFPA-------------ND---QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGG 307 (484)
Q Consensus 244 ~~ygfDGIDIDwE~p~-------------~~---~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~ 307 (484)
++=|||||+|.=-+-. ++ ..-+|-..|+.|+-++.+++-. ..+.|.+-+...... .
T Consensus 159 ~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg----~~~~vg~Rls~~d~~----~ 230 (363)
T COG1902 159 KEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVG----ADFPVGVRLSPDDFF----D 230 (363)
T ss_pred HHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhC----CCceEEEEECccccC----C
Confidence 4479999999864311 11 1135555555555554444321 344555555544431 1
Q ss_pred CCCcC-------hhhhhcc--CceEEeeeccC
Q 011487 308 PRGYP-------IEAINKY--MNWVSPMCFDY 330 (484)
Q Consensus 308 ~~~~d-------~~~l~~~--vD~v~lm~YD~ 330 (484)
..+++ .+.|.+. +|++++..-+.
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 22332 2444444 69998877554
No 83
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=72.98 E-value=8.3 Score=41.28 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 011487 234 IFINSTIEIA 243 (484)
Q Consensus 234 ~fi~si~~~l 243 (484)
.|-.+|.++|
T Consensus 398 afntNitdmL 407 (574)
T PF07462_consen 398 AFNTNITDML 407 (574)
T ss_pred HHHhhHHHHH
Confidence 3444444444
No 84
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=72.87 E-value=25 Score=35.02 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-------hhHHHHHHHHHHHHH
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-------QDMSNLALLFKQWRT 276 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-------~~~~~~~~flk~Lr~ 276 (484)
.+.+++++|+|.. .+.|++ +++.++++|+|+|+|++-.|... .+.+.+.++++++|+
T Consensus 88 ~~~p~ivsi~g~~---------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~ 151 (296)
T cd04740 88 FGTPVIASIAGST---------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK 151 (296)
T ss_pred CCCcEEEEEecCC---------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHh
Confidence 3688999998742 234443 44566778999999998765321 223445556666665
Q ss_pred Hh
Q 011487 277 SI 278 (484)
Q Consensus 277 ~l 278 (484)
..
T Consensus 152 ~~ 153 (296)
T cd04740 152 AT 153 (296)
T ss_pred cc
Confidence 43
No 85
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=72.19 E-value=24 Score=35.33 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=36.4
Q ss_pred CcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeEEeecCCCC-------hhhHHHHHHHHHHHHH
Q 011487 205 HIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG-FDGVDLDWEFPAN-------DQDMSNLALLFKQWRT 276 (484)
Q Consensus 205 ~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg-fDGIDIDwE~p~~-------~~~~~~~~~flk~Lr~ 276 (484)
+..++++|+|.. .+.|++ +++.++++| +|||+|+.--|.. .++.+.+.++++++|+
T Consensus 91 ~~p~i~si~g~~---------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 91 DTPIIANVAGST---------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred CCcEEEEeccCC---------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 678999998742 244444 444567888 9999998844321 1233455566666666
Q ss_pred Hh
Q 011487 277 SI 278 (484)
Q Consensus 277 ~l 278 (484)
+.
T Consensus 155 ~~ 156 (301)
T PRK07259 155 VV 156 (301)
T ss_pred hc
Confidence 54
No 86
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=72.13 E-value=49 Score=33.49 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=50.5
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCC-C-------------------------------chhhhhhcCC
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGS-D-------------------------------PNVFSKMAST 228 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~-~-------------------------------~~~f~~l~~~ 228 (484)
..++....-...+++++.||++ |+|+++.+--.-. + ...+-+ ..+
T Consensus 55 ~f~~d~~~FPdp~~~i~~l~~~--g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~D-ftn 131 (317)
T cd06600 55 LFTWDPYRFPEPKKLIDELHKR--NVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPD-FTN 131 (317)
T ss_pred ceeechhcCCCHHHHHHHHHHC--CCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccC-CCC
Confidence 4444433224457888999987 8898876521100 0 011222 467
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 229 KETRAIFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 229 ~~~r~~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
++.|+-+.+.+.+++.++|+||+=+|+-.+
T Consensus 132 p~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 132 PDTREWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred hHHHHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 899999999999998899999999998554
No 87
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=71.21 E-value=25 Score=33.71 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCC
Q 011487 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGG 307 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~ 307 (484)
|..+...|+..+.+... ..+|-+|.|....+++.-.+.+++||+.|++.+ .+..|.+.-.+
T Consensus 87 d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g-----~~v~iVADEWC--------- 147 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQIEALAELREELDRRG-----INVEIVADEWC--------- 147 (248)
T ss_dssp -HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT-------EEEEE-TT----------
T ss_pred CHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcC-----CCCeEEeehhc---------
Confidence 55566666666666555 457889999888889999999999999998744 33444433322
Q ss_pred CCCcChhhh--hccCceEEeeeccCCCC
Q 011487 308 PRGYPIEAI--NKYMNWVSPMCFDYHGS 333 (484)
Q Consensus 308 ~~~~d~~~l--~~~vD~v~lm~YD~~g~ 333 (484)
+..-|++.+ ++.+|+|.|.+=|+.|-
T Consensus 148 NT~eDI~~F~da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 148 NTLEDIREFADAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp -SHHHHHHHHHTT-SSEEEE-GGGGSST
T ss_pred CCHHHHHHHHhcCCcCEEEecCCCccch
Confidence 222244444 35699999999997653
No 88
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=70.92 E-value=33 Score=34.35 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh----------h
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----------Q 262 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~----------~ 262 (484)
.+.++.+++..++..++.++.|... . +.|++ +++.+++.|+|+|||++-.|... .
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~~~-~-------------~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~ 151 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCEYN-K-------------EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ 151 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCC-H-------------HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhcc
Confidence 3334455544345778999977411 1 33443 44555778999999999877421 3
Q ss_pred hHHHHHHHHHHHHHHh
Q 011487 263 DMSNLALLFKQWRTSI 278 (484)
Q Consensus 263 ~~~~~~~flk~Lr~~l 278 (484)
+.+.+.++++.+|+..
T Consensus 152 ~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 152 DPELVEEICRWVREAV 167 (299)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4566777777777654
No 89
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=70.92 E-value=45 Score=34.86 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA 259 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~ 259 (484)
+.+.+.+..+|++.+.+.||.||.|... .+.| .+ +++.+++.|.|+|+|++-.|.
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s-~~~~----------~~----~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN-KDAW----------EE----IIERVEETGVDALEINFSCPH 152 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC-HHHH----------HH----HHHHHHhcCCCEEEEECCCCC
Confidence 4444455667766678899999965321 2222 22 344567789999999997664
No 90
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=70.54 E-value=51 Score=37.02 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=105.7
Q ss_pred CccEEEE-eeeeeeCCCC--EEEEcCcC----hHHHHHHHHHHHhhCCCcEEE--EEECCCCCCc---------------
Q 011487 164 YFTHIYY-AFLLPEPKTF--KLNVTLLD----HAKLLELVGTLRVQNSHIKIL--LSIGGGGSDP--------------- 219 (484)
Q Consensus 164 ~~ThIi~-af~~i~~~gg--~l~~~~~~----~~~~~~~i~~lk~~n~~~Kvl--lSIGG~~~~~--------------- 219 (484)
+++||.+ +|+..+.+|. .+.|.+.. .+.|.+..=+||.+ .++||. +-+-++....
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR-~~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~~ 425 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASR-PDVEVYAWMPVLAFDMDPSLPRITRIDPKTGKT 425 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhh-hCceEEEeeehhhccCCcccchhhhcccccCcc
Confidence 6888888 5555544431 24454432 24555554466665 378887 3333332100
Q ss_pred ----hhhhhhcCCHHHHHHHHHHHHHHHHHh-CCCeeEEeec-------CCC---------------------Chh----
Q 011487 220 ----NVFSKMASTKETRAIFINSTIEIARKY-GFDGVDLDWE-------FPA---------------------NDQ---- 262 (484)
Q Consensus 220 ----~~f~~l~~~~~~r~~fi~si~~~l~~y-gfDGIDIDwE-------~p~---------------------~~~---- 262 (484)
..+.++---.....+.|..|.+=|..| .||||=|.-+ ... +++
T Consensus 426 ~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~ 505 (672)
T PRK14581 426 SIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQR 505 (672)
T ss_pred ccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHH
Confidence 011111111233346788888888887 7999988653 211 000
Q ss_pred ----hHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCC--CCcChhhhhccCceEEeeeccCCCCCCC
Q 011487 263 ----DMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGP--RGYPIEAINKYMNWVSPMCFDYHGSWEN 336 (484)
Q Consensus 263 ----~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~--~~~d~~~l~~~vD~v~lm~YD~~g~w~~ 336 (484)
....+..|-.+|++++++... +.+...-.+.......+. .. -..++..+.+..||+.+|+|-|...
T Consensus 506 w~~~k~~~l~~f~~~l~~~v~~~~~----p~~~tarniya~~~l~p~-~~~w~aQ~l~~~~~~yD~~a~mamp~me~--- 577 (672)
T PRK14581 506 WTRYKSKYLIDFTNELTREVRDIRG----PQVKSARNIFAMPILEPE-SEAWFAQNLDDFLANYDWVAPMAMPLMEK--- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC----ccceehhcccccccCChh-HHHHHHhHHHHHHhhcchhHHhhchhhhc---
Confidence 123356788888888876321 122222222222111000 01 1235678888999999999986532
Q ss_pred CCCCCCccCCCCCCccHHHHHHHHHHcCCCCCCEeecCccceeeee
Q 011487 337 FTGLHAALNDPRSNISTSYGIGSWIQAGVPAQKLVMGLPLYGRTWK 382 (484)
Q Consensus 337 ~~g~~spl~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp~YG~~~~ 382 (484)
..... .+.+....++...+.-...+|+|+-|. .++|.
T Consensus 578 ~~~~~-------~~~w~~~l~~~v~~~~~~~~k~vfelQ--~~dw~ 614 (672)
T PRK14581 578 VPLSE-------SNEWLAELVNKVAQRPGALEKTVFELQ--SKDWT 614 (672)
T ss_pred ccccc-------HHHHHHHHHHHHHhcCCcccceEEEee--ccccc
Confidence 11111 123555556655544345799999886 45675
No 91
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.71 E-value=47 Score=30.63 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccC
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYG 306 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~ 306 (484)
-++-+|++-+..+ +-|.|=| |..+|....-..||--.||++|+-.. .+..+|.++.--+-..
T Consensus 5 vSPin~eEA~eAi-----eGGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p--------~d~~vSAT~GDvpYKP--- 66 (235)
T COG1891 5 VSPINREEAIEAI-----EGGADII--DVKNPAEGSLGANFPWVIREIREVVP--------EDQEVSATVGDVPYKP--- 66 (235)
T ss_pred eccCCHHHHHHHh-----hCCCceE--eccCcccCcccCCChHHHHHHHHhCc--------cceeeeeeecCCCCCC---
Confidence 3444455443333 3455544 55666545557899999999999875 4567888764211110
Q ss_pred CCCCc-ChhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHH-----cCCCCCCEeecCccceee
Q 011487 307 GPRGY-PIEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQ-----AGVPAQKLVMGLPLYGRT 380 (484)
Q Consensus 307 ~~~~~-d~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~-----~Gvp~~KlvLGlp~YG~~ 380 (484)
+.... -+-....-+||+.+-.|+-. +.+++++.+.. .-+.++|+|+.-. |+-.
T Consensus 67 GT~slAalGaav~GaDYiKVGLYg~k--------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAaG-YaDa 125 (235)
T COG1891 67 GTASLAALGAAVAGADYIKVGLYGTK--------------------NEEEALEVMKNVVRAVKDFDPSKKVVAAG-YADA 125 (235)
T ss_pred chHHHHHHHhHhhCCceEEEeecccc--------------------cHHHHHHHHHHHHHHHhccCCCceEEecc-ccch
Confidence 00000 12233355899999888743 22344433321 2377888887643 2221
Q ss_pred eeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEE-cCCCceeEEEeCCEEEEECCHHHHHHHHHHHHHCCC
Q 011487 381 WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVF-DATPVAYHSFAGDSWIGYDDVLSIKLKVQFAKSKGL 459 (484)
Q Consensus 381 ~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~-D~~s~~~y~y~~~~~isydd~~Sl~~K~~~ak~~gL 459 (484)
+. -+.++--.+.+...+.|..+.. |.. .-+++...-|.+.+-+++-++.++++||
T Consensus 126 ~R-------------------vgsv~Pl~~P~vaa~ag~DvaMvDTa-----iKDGkslFdfm~~e~l~eFvd~Ah~hGL 181 (235)
T COG1891 126 HR-------------------VGSVSPLLLPEVAAEAGADVAMVDTA-----IKDGKSLFDFMDEEELEEFVDLAHEHGL 181 (235)
T ss_pred hh-------------------ccCcCccccHHHHHhcCCCEEEEecc-----cccchhHHhhhcHHHHHHHHHHHHHcch
Confidence 21 1233334455555555553321 211 1123335568999999999999999987
Q ss_pred c
Q 011487 460 G 460 (484)
Q Consensus 460 g 460 (484)
-
T Consensus 182 ~ 182 (235)
T COG1891 182 E 182 (235)
T ss_pred H
Confidence 4
No 92
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=68.60 E-value=72 Score=32.62 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=29.5
Q ss_pred CccEEEEeeeeeeCCCC----EEEEcCc-ChHHHHHHHHHHHhhCCCcEEEEEE
Q 011487 164 YFTHIYYAFLLPEPKTF----KLNVTLL-DHAKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 164 ~~ThIi~af~~i~~~gg----~l~~~~~-~~~~~~~~i~~lk~~n~~~KvllSI 212 (484)
.+--|+.....+++.+. .+.+.++ .-..++++++.+|++ |.|+++-|
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL 100 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQL 100 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeec
Confidence 45566666666666542 2222221 225677888888887 89999766
No 93
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.92 E-value=29 Score=35.60 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=43.6
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----hhhHHHHHHHHHHHHHHh
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----DQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----~~~~~~~~~flk~Lr~~l 278 (484)
.++.|++||+|... .......+.|++.+..+ .+ +.|+|+|++--|.. .++.+.+.++++++|+++
T Consensus 136 ~~~pvivsI~~~~~--------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~ 205 (344)
T PRK05286 136 RGIPLGINIGKNKD--------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQ 205 (344)
T ss_pred CCCcEEEEEecCCC--------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 46889999988532 11122345565555554 33 48999999976532 345677888889998887
Q ss_pred H
Q 011487 279 N 279 (484)
Q Consensus 279 ~ 279 (484)
+
T Consensus 206 ~ 206 (344)
T PRK05286 206 A 206 (344)
T ss_pred h
Confidence 5
No 94
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=67.41 E-value=37 Score=35.80 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh----------hhHH
Q 011487 196 VGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----------QDMS 265 (484)
Q Consensus 196 i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~----------~~~~ 265 (484)
++.+++..++..++++|.|... . +.++ .++..+++.|+|+|||++-.|... .+.+
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~-----------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~ 154 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECN-----------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPE 154 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCC-----------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHH
Confidence 3445444445678999987511 1 2233 345566778999999999877411 3556
Q ss_pred HHHHHHHHHHHHh
Q 011487 266 NLALLFKQWRTSI 278 (484)
Q Consensus 266 ~~~~flk~Lr~~l 278 (484)
.+.++++++++..
T Consensus 155 ~~~~i~~~v~~~~ 167 (420)
T PRK08318 155 LVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHHHHhcc
Confidence 6777777777653
No 95
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=67.35 E-value=25 Score=35.53 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred CcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----------hhhHHHHHHHHHH
Q 011487 205 HIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----------DQDMSNLALLFKQ 273 (484)
Q Consensus 205 ~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----------~~~~~~~~~flk~ 273 (484)
+..+++.|+|.+ . +.|++.. ..+++.|||||||+.-.|.. ..+.+...+++++
T Consensus 62 e~p~~vQl~g~~--p-------------~~~~~aA-~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~a 125 (312)
T PRK10550 62 GTLVRIQLLGQY--P-------------QWLAENA-ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 (312)
T ss_pred CCcEEEEeccCC--H-------------HHHHHHH-HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHH
Confidence 467889998753 1 3344433 34566899999999977641 1334455666666
Q ss_pred HHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 274 WRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 274 Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
+|+++. .++-|++-+..
T Consensus 126 vr~~~~--------~~~pVsvKiR~ 142 (312)
T PRK10550 126 MREAVP--------AHLPVTVKVRL 142 (312)
T ss_pred HHHhcC--------CCcceEEEEEC
Confidence 666652 13456666543
No 96
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=67.06 E-value=41 Score=34.98 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=53.6
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCC----------CCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCe
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGG----------GSDPNVFSKMASTKETRAIFINSTIEIARKYGFDG 250 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~----------~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDG 250 (484)
...+.. +..-+.+++++|++ |+..++.+-.. ..+...-..-+ .+...+.|++=++++++.|.=.|
T Consensus 97 ~yDW~~--D~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~G 171 (384)
T PF14587_consen 97 SYDWDA--DAGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWG 171 (384)
T ss_dssp -B-TTS--SHHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT
T ss_pred CcCCCC--CHHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcC
Confidence 444443 23334467777877 88888876321 00000001112 23678899999999999887789
Q ss_pred eEEeecCCCC--------------hhhHHHHHHHHHHHHHHhHHhhh
Q 011487 251 VDLDWEFPAN--------------DQDMSNLALLFKQWRTSINQEAR 283 (484)
Q Consensus 251 IDIDwE~p~~--------------~~~~~~~~~flk~Lr~~l~~~~~ 283 (484)
|.|++-.|.+ .-+.+....||+.|+.+|.+.+.
T Consensus 172 I~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL 218 (384)
T PF14587_consen 172 INFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGL 218 (384)
T ss_dssp --EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-
T ss_pred CccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999854432 12456788999999999998653
No 97
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=66.87 E-value=95 Score=30.42 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHH-----HhCCCeeEEeecCCCChh
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIAR-----KYGFDGVDLDWEFPANDQ 262 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~-----~ygfDGIDIDwE~p~~~~ 262 (484)
.+..+.+.+.+|+ +.+++|+|==|--.-+ . ++-+...+=|+...++-. .+++|||-|| |-+.+.
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg-~-------R~~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p~~~- 119 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYG-S-------RPLSEVKADIDTYASWYGQSEDYGYRVDGIFFD-EAPNDY- 119 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEcccc-C-------CCHHHHHHHHHHHhhccccccCCCcccceEEEe-cCCCcH-
Confidence 4567777777775 3468999943321111 1 222222333344444433 2789999999 655333
Q ss_pred hHHHHHHHHHHHHHHhH
Q 011487 263 DMSNLALLFKQWRTSIN 279 (484)
Q Consensus 263 ~~~~~~~flk~Lr~~l~ 279 (484)
.....+++|.+.++
T Consensus 120 ---~~~~y~~~l~~~vk 133 (253)
T PF12138_consen 120 ---ANLPYYQNLYNYVK 133 (253)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 33344445544444
No 98
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=66.59 E-value=48 Score=33.49 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=27.9
Q ss_pred hCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 202 QNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 202 ~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
...+..+++.|+|.+ . +.|++ .+..+++.|+|||||+.--|
T Consensus 59 ~~~~~p~i~ql~g~~--~-------------~~~~~-aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 59 AEDETPISVQLFGSD--P-------------DTMAE-AAKINEELGADIIDINMGCP 99 (319)
T ss_pred CCccceEEEEEeCCC--H-------------HHHHH-HHHHHHhCCCCEEEEECCCC
Confidence 334677889998854 1 23333 34466788999999998655
No 99
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.52 E-value=29 Score=34.82 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEECCCCC-Cch------------------------------hhhhhcCCHHHHHHHHHHH
Q 011487 191 KLLELVGTLRVQNSHIKILLSIGGGGS-DPN------------------------------VFSKMASTKETRAIFINST 239 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~KvllSIGG~~~-~~~------------------------------~f~~l~~~~~~r~~fi~si 239 (484)
..+++++.+|++ |+|+++.|-=.-. +.. .+-+ ..+++.|+=+.+.+
T Consensus 71 dp~~mi~~l~~~--G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~ 147 (303)
T cd06592 71 DPKGMIDQLHDL--GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLD-FTNPEAVDWFLSRL 147 (303)
T ss_pred CHHHHHHHHHHC--CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEe-CCCHHHHHHHHHHH
Confidence 467888899987 8898876522100 001 1111 46789999999999
Q ss_pred HHHHHHhCCCeeEEeecCC
Q 011487 240 IEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p 258 (484)
.+++.++|+||+=+|+-.+
T Consensus 148 ~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 148 KSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHhCCcEEEeCCCCc
Confidence 9999899999999999443
No 100
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=66.45 E-value=35 Score=34.75 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChh------
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQ------ 262 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~------ 262 (484)
.+.+.+.+..++++ .++.|+++|+|.+. +.+ ..++..+++.|+|+|+|++-.+....
T Consensus 86 ~d~~~~~i~~~~~~-~~~pvi~sI~g~~~---------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~~ 148 (334)
T PRK07565 86 PEEYLELIRRAKEA-VDIPVIASLNGSSA---------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGAE 148 (334)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEEeccCCH---------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCcccc
Confidence 34455555555554 36899999988431 122 23555667789999999985432211
Q ss_pred hHHHHHHHHHHHHHHh
Q 011487 263 DMSNLALLFKQWRTSI 278 (484)
Q Consensus 263 ~~~~~~~flk~Lr~~l 278 (484)
..+.+.++++++++..
T Consensus 149 ~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 149 VEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 1133556667776654
No 101
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=65.98 E-value=15 Score=36.07 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=43.8
Q ss_pred EEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 183 NVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 183 ~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
++....-...+++++.||++ |+|+++.+-- . + |+-|.+.+.+++.++|+||+=+|.-.+
T Consensus 59 ~~d~~~Fpdp~~~i~~l~~~--g~~~~~~~~P-----~-----v-----~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 59 DWDAGKFPNPKSMIDELHDN--GVKLVLWIDP-----Y-----I-----REWWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred ecChhhCCCHHHHHHHHHHC--CCEEEEEeCh-----h-----H-----HHHHHHHHHHhhccCCCCEEeccCCCC
Confidence 44333334567899999987 8999998732 1 1 777888888887889999999999544
No 102
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=65.25 E-value=30 Score=36.21 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-----CCCCC----Cchh----------------hhhhcCCHHHHHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI-----GGGGS----DPNV----------------FSKMASTKETRAIFINSTIEIAR 244 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI-----GG~~~----~~~~----------------f~~l~~~~~~r~~fi~si~~~l~ 244 (484)
..++.+++.+|++ |+|.=|=+ +-.+. .++. +-+ +++++.|+-+.+.+.++++
T Consensus 104 ~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD-~~~pev~~~l~~~i~~ll~ 180 (394)
T PF02065_consen 104 NGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLD-LSNPEVRDYLFEVIDRLLR 180 (394)
T ss_dssp THHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB--TTSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEc-CCCHHHHHHHHHHHHHHHH
Confidence 5688899999988 77766544 11100 0110 111 4678899999999999999
Q ss_pred HhCCCeeEEeecCCC----Chh---hHH----HHHHHHHHHHHHhHHhhhhcCCCCeEEEEEec
Q 011487 245 KYGFDGVDLDWEFPA----NDQ---DMS----NLALLFKQWRTSINQEARITNTSPLLLTAAVY 297 (484)
Q Consensus 245 ~ygfDGIDIDwE~p~----~~~---~~~----~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~ 297 (484)
++|+|.|-+|+.... +.. ... .+-+++++||+++ +++++-.+..
T Consensus 181 ~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~---------P~v~iE~Css 235 (394)
T PF02065_consen 181 EWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF---------PDVLIENCSS 235 (394)
T ss_dssp HTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT---------TTSEEEE-BT
T ss_pred hcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC---------CCcEEEeccC
Confidence 999999999997432 111 122 3444666666665 6678877754
No 103
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=64.45 E-value=36 Score=34.37 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeEEeecCCCC------h
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG-FDGVDLDWEFPAN------D 261 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg-fDGIDIDwE~p~~------~ 261 (484)
-+.+.+.++.++++.++..+++||.|.+ .+ .++ .+++.+++.| .|.|+|++--|.. .
T Consensus 76 ~~~~~~~i~~~~~~~~~~pvI~Si~G~~--~~-------------~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g 139 (310)
T PRK02506 76 FDYYLDYVLELQKKGPNKPHFLSVVGLS--PE-------------ETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIA 139 (310)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEeCc--HH-------------HHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccc
Confidence 3444555555555445688999997753 22 222 2344456777 7999999986632 1
Q ss_pred hhHHHHHHHHHHHHHHh
Q 011487 262 QDMSNLALLFKQWRTSI 278 (484)
Q Consensus 262 ~~~~~~~~flk~Lr~~l 278 (484)
.+.+.+.++++.+|++.
T Consensus 140 ~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 140 YDFETTEQILEEVFTYF 156 (310)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 23455677777777764
No 104
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=63.16 E-value=9.4 Score=30.42 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCCCCchhhhhhcCC-HHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 213 GGGGSDPNVFSKMAST-KETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 213 GG~~~~~~~f~~l~~~-~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
|-|.+....+.-..-+ +.-|+.+++.+++.+..-.||||-+|--
T Consensus 32 ~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 32 SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3354434444444444 8999999999999999889999999853
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=62.93 E-value=55 Score=35.91 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEeec-CCCCh---------------hhHHHHHHHHHHHHHHh
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDWE-FPAND---------------QDMSNLALLFKQWRTSI 278 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDwE-~p~~~---------------~~~~~~~~flk~Lr~~l 278 (484)
.+++-|+.+.+.+..++ ++|+||+-||-- +.... .+......|++++++.+
T Consensus 174 ~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 174 ENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDV 240 (551)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHh
Confidence 36777777777666666 689999999952 21110 01234678899998764
No 106
>PLN02361 alpha-amylase
Probab=62.54 E-value=57 Score=34.27 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEE------CCCCCCchh-------------------------------h---hhh-c
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSI------GGGGSDPNV-------------------------------F---SKM-A 226 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSI------GG~~~~~~~-------------------------------f---~~l-~ 226 (484)
+.+.++++++++|++ |+|||+-+ |...+.... | .++ .
T Consensus 74 t~~el~~li~~~h~~--gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~ 151 (401)
T PLN02361 74 SEHLLKSLLRKMKQY--NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDH 151 (401)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCC
Confidence 467899999999998 89999755 100000000 0 011 1
Q ss_pred CCHHHHHHHHHHHHHHHH-HhCCCeeEEeecCCCChhhHHHHHHHHHHHHHH
Q 011487 227 STKETRAIFINSTIEIAR-KYGFDGVDLDWEFPANDQDMSNLALLFKQWRTS 277 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~-~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~ 277 (484)
.++.-|+.+++-+. +++ ++|+||+-||.-.... ..|++++.++
T Consensus 152 ~np~Vr~~l~~~~~-wl~~~~GiDGfRlDavk~~~-------~~f~~~~~~~ 195 (401)
T PLN02361 152 TQHFVRKDIIGWLI-WLRNDVGFQDFRFDFAKGYS-------AKFVKEYIEA 195 (401)
T ss_pred CCHHHHHHHHHHHH-HHHhcCCCCEEEEeccccCC-------HHHHHHHHHh
Confidence 45677777777664 554 5999999999743222 3455655554
No 107
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.30 E-value=48 Score=33.18 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhh--CCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHh--CCCeeEEeecCCCC-----
Q 011487 190 AKLLELVGTLRVQ--NSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKY--GFDGVDLDWEFPAN----- 260 (484)
Q Consensus 190 ~~~~~~i~~lk~~--n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~y--gfDGIDIDwE~p~~----- 260 (484)
+.+.+.++.++++ ..+..+++||+|. . +.+++.+..+.+.. +.|+|||++--|..
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~-~---------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~ 137 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS-A---------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPP 137 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC-H---------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCccc
Confidence 3444444444332 2467889999864 1 33333333333333 69999999986642
Q ss_pred -hhhHHHHHHHHHHHHHHh
Q 011487 261 -DQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 261 -~~~~~~~~~flk~Lr~~l 278 (484)
..+.+.+.++++.+|++.
T Consensus 138 ~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 138 PAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 124567777777777765
No 108
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=61.41 E-value=38 Score=32.10 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=38.0
Q ss_pred hhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----------hhhHHHHHH
Q 011487 201 VQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----------DQDMSNLAL 269 (484)
Q Consensus 201 ~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----------~~~~~~~~~ 269 (484)
....+..++++|+|.. . +.|++ .++.+++.|||||+|+.-.|.. ..+.+...+
T Consensus 50 ~~~~~~p~~~qi~g~~--~-------------~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~e 113 (231)
T cd02801 50 RNPEERPLIVQLGGSD--P-------------ETLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAE 113 (231)
T ss_pred cCccCCCEEEEEcCCC--H-------------HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHH
Confidence 3446889999999753 1 23333 3445566899999999755421 013344556
Q ss_pred HHHHHHHHh
Q 011487 270 LFKQWRTSI 278 (484)
Q Consensus 270 flk~Lr~~l 278 (484)
+++++|+++
T Consensus 114 ii~~v~~~~ 122 (231)
T cd02801 114 IVRAVREAV 122 (231)
T ss_pred HHHHHHHhc
Confidence 666666654
No 109
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.20 E-value=41 Score=33.39 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
+..+.++++-+|++ ||+|+|=..-..+ ... ....++ .+.+.+.+++.|+.||-+||-.
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~--~~~------~~~~~~-~~~~f~~~~~~Gv~GvKidF~~ 129 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG--GNV------ANLEKQ-LDEAFKLYAKWGVKGVKIDFMD 129 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT--TBH------HHHHCC-HHHHHHHHHHCTEEEEEEE--S
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc--hhh------HhHHHH-HHHHHHHHHHcCCCEEeeCcCC
Confidence 46778899999998 7888876543221 000 112233 3888999999999999999964
No 110
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.15 E-value=34 Score=35.10 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.9
Q ss_pred CCCCCC
Q 011487 50 PDHPWP 55 (484)
Q Consensus 50 ~~~~~~ 55 (484)
-|||+-
T Consensus 109 kF~pLE 114 (379)
T PF11593_consen 109 KFQPLE 114 (379)
T ss_pred cceech
Confidence 455544
No 111
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=60.65 E-value=74 Score=35.93 Aligned_cols=6 Identities=33% Similarity=0.025 Sum_probs=2.5
Q ss_pred cccccC
Q 011487 42 HSISTA 47 (484)
Q Consensus 42 ~~~~~~ 47 (484)
||-++.
T Consensus 515 ~s~~~~ 520 (1102)
T KOG1924|consen 515 SSPSQL 520 (1102)
T ss_pred cCcccC
Confidence 444443
No 112
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=59.25 E-value=53 Score=37.57 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeeEEeecC---------CC----Ch---hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEE
Q 011487 231 TRAIFINSTIEIARKYGFDGVDLDWEF---------PA----ND---QDMSNLALLFKQWRTSINQEARITNTSPLLLTA 294 (484)
Q Consensus 231 ~r~~fi~si~~~l~~ygfDGIDIDwE~---------p~----~~---~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsv 294 (484)
..+.|++... .+++-|||||+|.--+ |. .+ ..-+|-..|+.++-+++++.- + .++.|++
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~---~-~~~~v~~ 623 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVW---P-AEKPMSV 623 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhc---C-CCCeeEE
Confidence 4455665443 4556799999998752 21 11 123444555555555554321 1 3566777
Q ss_pred EecccccccccCCCCCcC------h-hhhhcc-CceEEee
Q 011487 295 AVYFASRFTIYGGPRGYP------I-EAINKY-MNWVSPM 326 (484)
Q Consensus 295 av~~~~~~~~~~~~~~~d------~-~~l~~~-vD~v~lm 326 (484)
-+....+. ..+++ + +.|.+. +|+|+|-
T Consensus 624 ri~~~~~~-----~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 624 RISAHDWV-----EGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred EEcccccc-----CCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 66543322 12222 2 344443 8999885
No 113
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=58.59 E-value=65 Score=32.87 Aligned_cols=63 Identities=5% Similarity=0.134 Sum_probs=46.6
Q ss_pred CcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC----------ChhhHHHHHHHHHHH
Q 011487 205 HIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA----------NDQDMSNLALLFKQW 274 (484)
Q Consensus 205 ~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~----------~~~~~~~~~~flk~L 274 (484)
+...++-+.|-+++. +..+++.++..+.+.||.||.+||..-+ +..+.+.+..|+..|
T Consensus 74 ~~P~vVl~HGL~G~s------------~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l 141 (345)
T COG0429 74 KKPLVVLFHGLEGSS------------NSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWL 141 (345)
T ss_pred CCceEEEEeccCCCC------------cCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHH
Confidence 344666777765521 2459999999999999999999998543 234567888889888
Q ss_pred HHHhH
Q 011487 275 RTSIN 279 (484)
Q Consensus 275 r~~l~ 279 (484)
++++.
T Consensus 142 ~~~~~ 146 (345)
T COG0429 142 KARFP 146 (345)
T ss_pred HHhCC
Confidence 88664
No 114
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=57.85 E-value=41 Score=37.32 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEE-CCC---------CCC--------------chhhhhh---cCCHHHHHHHHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSI-GGG---------GSD--------------PNVFSKM---ASTKETRAIFINSTI 240 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSI-GG~---------~~~--------------~~~f~~l---~~~~~~r~~fi~si~ 240 (484)
..+.+++||+++|++ |+-|||-+ -+. .++ ...|... ....+-|.=|++++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 458899999999998 89999865 110 000 1112222 224678888999999
Q ss_pred HHHHHhCCCeeEEeecCCC---------------C--hhhHHHHHHHHHHHHHHhHHh
Q 011487 241 EIARKYGFDGVDLDWEFPA---------------N--DQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE~p~---------------~--~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-+|++|.+||+-+|--... . ..+....++|++++.+.++.+
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~ 347 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEE 347 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhccc
Confidence 9999999999999853211 0 011234556777777766543
No 115
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=57.55 E-value=43 Score=29.31 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
..++-+++.+++. |+++++-|==-+ ...+...--+.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvN--g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVN--GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCc--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 5677788888887 788876552221 22222223478999999999999999999965555
No 116
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=56.75 E-value=78 Score=32.17 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhh------
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQD------ 263 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~------ 263 (484)
+.+.+.+..++++ .+..|+++|.|.. . +.| ..++..+++.|+|+|+|++-.+..+.+
T Consensus 85 ~~~~~~i~~~~~~-~~~pvi~si~g~~--~-------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~ 147 (325)
T cd04739 85 EEYLELIRRAKRA-VSIPVIASLNGVS--A-------------GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEV 147 (325)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEeCCCC--H-------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH
Confidence 3444444444432 3678999997632 1 222 234556677899999999965322111
Q ss_pred HHHHHHHHHHHHHHh
Q 011487 264 MSNLALLFKQWRTSI 278 (484)
Q Consensus 264 ~~~~~~flk~Lr~~l 278 (484)
.+.+.++++++|++.
T Consensus 148 ~~~~~eiv~~v~~~~ 162 (325)
T cd04739 148 EQRYLDILRAVKSAV 162 (325)
T ss_pred HHHHHHHHHHHHhcc
Confidence 134556666666654
No 117
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.52 E-value=56 Score=39.46 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEEC-------CCC---------CCchhh-------------h-----hhcCCHHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIG-------GGG---------SDPNVF-------------S-----KMASTKETRA 233 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIG-------G~~---------~~~~~f-------------~-----~l~~~~~~r~ 233 (484)
....++++|+++|++ |++|||-+- +.. .+...| . --++++..|+
T Consensus 245 ~~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~ 322 (1221)
T PRK14510 245 GEEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILR 322 (1221)
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHH
Confidence 346789999999998 999998751 100 000000 0 0123567777
Q ss_pred HHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 234 IFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 234 ~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
-.++++.-+++ ||+||.-||.-....... ..|+++++..+++.
T Consensus 323 ~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 323 LPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred HHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 78888888999 999999999743211111 23555555555543
No 118
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=56.07 E-value=1.8e+02 Score=30.60 Aligned_cols=249 Identities=12% Similarity=0.105 Sum_probs=124.1
Q ss_pred eeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEE-EEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 175 PEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKI-LLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 175 i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~Kv-llSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
+|..||- +..+...|.+++..+.++. +... .+-+||--..+..|.. +...+..++-.+.|..+++. ||+=|+|
T Consensus 49 Vnq~GGY---TGmtP~dF~~~V~~iA~~~-gf~~~~iiLggDHlGPn~Wq~-lpa~eAM~~A~~li~ayV~A-GF~kIHL 122 (420)
T TIGR02810 49 VNQFGGY---TGMTPADFRDFVETIADRI-GFPRDRLILGGDHLGPNPWQH-LPADEAMAKAAALVDAYVEA-GFTKIHL 122 (420)
T ss_pred ccccCCc---CCCCHHHHHHHHHHHHHHc-CCChhcEEeecCCCCCccccC-CCHHHHHHHHHHHHHHHHHc-CCceEEe
Confidence 4444443 3446688888887766642 3332 3445555444655654 33345555555555555554 8888888
Q ss_pred eecCCC-C------h--------------------------------------------------hhHHHHHHHHHHHHH
Q 011487 254 DWEFPA-N------D--------------------------------------------------QDMSNLALLFKQWRT 276 (484)
Q Consensus 254 DwE~p~-~------~--------------------------------------------------~~~~~~~~flk~Lr~ 276 (484)
|.-..- . + ...+.+..+|..+|+
T Consensus 123 D~Sm~ca~d~~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvIGTEvP~pGGa~~~~~~~~vTs~e~~~~ti~~h~~ 202 (420)
T TIGR02810 123 DASMGCAGDPAPLDDATVAERAARLCAVAEAAATDRRGETKPVYVIGTEVPVPGGALEALQTLAVTTPEAARATLRAHRK 202 (420)
T ss_pred cCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeccccCCCCchhhhccccCCCCHHHHHHHHHHHHH
Confidence 874320 0 0 123445666666666
Q ss_pred HhHHhhhhcCCCCeEEEEEecccccccccCCCCCcCh---hhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccH
Q 011487 277 SINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPI---EAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNIST 353 (484)
Q Consensus 277 ~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~---~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~ 353 (484)
+|.+.+-..-. .-.+.+.+++...+. ...-..|+. +.|.+.++-.-.|.|.=|+ .++..
T Consensus 203 af~~~GL~~aw-~rvi~~VVQpGvef~-~~~V~~y~~~~A~~Ls~~~~~~~~lvfEaHS----------------TDYQt 264 (420)
T TIGR02810 203 AFAARGLEDAW-PRVIALVVQPGVEFD-HHNVIHYQPERAQALSQVIDNTPGLVFEAHS----------------TDYQT 264 (420)
T ss_pred HHHHcCchhhh-ccceEEEecCCeeEC-CCceeecCHHHHHHHHHHHHhCCCceeecCC----------------ccCCC
Confidence 66654322110 114455555444221 101223333 3333333333333333222 23455
Q ss_pred HHHHHHHHHcCCCCCCEeecCccceee--eeecCCCCCCCCCCcCCCCCCCcccchHHHHH-Hh--hcCCceEEEcCCCc
Q 011487 354 SYGIGSWIQAGVPAQKLVMGLPLYGRT--WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVK-FN--MEGTAAVVFDATPV 428 (484)
Q Consensus 354 ~~~v~~~~~~Gvp~~KlvLGlp~YG~~--~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~-~l--~~~g~~~~~D~~s~ 428 (484)
..++..+.+.|+..-|+.-+|.|-=|. |.+..- .... .+. ...-...+.++ .+ ....|..++..+..
T Consensus 265 ~~al~~lv~dgfaiLKVGPalTfalreAlfaL~~i-e~el----~~~---~~~s~l~~~le~~M~~~p~~W~k~y~g~~~ 336 (420)
T TIGR02810 265 PAALRALVRDHFAILKVGPALTFALREALFALDQI-EDEL----VPA---PARSGLRAVIERVMLAEPGYWKGYYHGDDN 336 (420)
T ss_pred HHHHHHHHhcCceeeeechhHhHHHHHHHHHHHHH-HHHh----cCc---cccchHHHHHHHHHHhCchhhhhhcCCCHH
Confidence 778888889999999998877665332 221110 0000 000 01112233333 21 23456666655431
Q ss_pred -----eeEEEeCCEEEEECCHHHHHHHHHHHH
Q 011487 429 -----AYHSFAGDSWIGYDDVLSIKLKVQFAK 455 (484)
Q Consensus 429 -----~~y~y~~~~~isydd~~Sl~~K~~~ak 455 (484)
..|.|.+..-.+|.+++-..+.-++..
T Consensus 337 ~~~l~r~ys~sDRiRYyw~~p~v~~a~~~L~~ 368 (420)
T TIGR02810 337 EQRLDRRYSYSDRIRYYWPHPRIAAAVETLMA 368 (420)
T ss_pred HHHHHHHhhhhhceEEecCCHHHHHHHHHHHH
Confidence 256676666666788887776666653
No 119
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=55.75 E-value=25 Score=38.05 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCC------Cc--hhhhhhc--CCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGS------DP--NVFSKMA--STKETRAIFINSTIEIARKYGFDGVDLDWEFPAND- 261 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~------~~--~~f~~l~--~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~- 261 (484)
..+++++++.++++||+.|- |+- +. .....+. ..++-++.+++=+++||+.|.=-||+|+--.+.++
T Consensus 156 ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 46778888888999999876 321 00 0001111 12367899999999999999988999987433221
Q ss_pred --------------hhHHHHHHHHHH-HHHHhHHh
Q 011487 262 --------------QDMSNLALLFKQ-WRTSINQE 281 (484)
Q Consensus 262 --------------~~~~~~~~flk~-Lr~~l~~~ 281 (484)
-..+....||+. |+-+|++.
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~ 268 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKA 268 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTS
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 124557788886 88888764
No 120
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=55.68 E-value=93 Score=35.88 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcC--CHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMAS--TKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~--~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
.++..+++++|+++++. +++.-|..-. ...+..... +... +.-.+-++++|+..|||-.-|
T Consensus 145 aRlAtlI~~~Rae~~Nt-LllD~GD~iQ-GSpl~~~~a~~~~~~-~g~~~P~i~amN~LGyDA~tL 207 (814)
T PRK11907 145 AKTAVLIEEAKKENPNV-VLVDNGDTIQ-GTPLGTYKAIVDPVE-EGEQHPMYAALEALGFDAGTL 207 (814)
T ss_pred HHHHHHHHHHHHhCCCE-EEEecCCCCC-CCcccchhhhccccc-cCcchHHHHHHhccCCCEEEe
Confidence 56678888999887653 5555555422 222221110 0000 000135899999999997765
No 121
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.38 E-value=47 Score=38.18 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=15.2
Q ss_pred hhhhhccCCccceEEEEEeeccccccccCCCCCCCCCC
Q 011487 19 MAKYKFMSPLIPVLIVFTFVKDCHSISTAMPPDHPWPA 56 (484)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (484)
.++-+-..|.-|.- ++.+. -+-..|.||--|+..
T Consensus 951 ~~~~~~l~p~~~~~-~~~~~---~~~~~ai~~skpl~~ 984 (1080)
T KOG0566|consen 951 TAEEEALLPEPPQA-VPVSL---SSSTDAIPPSKPLIP 984 (1080)
T ss_pred hhhccccCCCCCCC-Ccccc---cCccccCCCCCCCCC
Confidence 34445556665551 11111 122345556666654
No 122
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=55.15 E-value=1.4e+02 Score=32.62 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHhhCCCcEEE---EEECCCCCC-----c---hh---hhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 188 DHAKLLELVGTLRVQNSHIKIL---LSIGGGGSD-----P---NV---FSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~Kvl---lSIGG~~~~-----~---~~---f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
.+.++..+.+.+.+.+ +..|+ +-|||-..- + +. |..+--.-+..+-|-.++.++++.--+-.+-|
T Consensus 311 EeEQ~~aY~~vlea~~-g~pviiRTlDiGGDK~lpyl~lp~E~NPfLG~RaIRl~l~~~~if~tQLRAilRAS~~G~l~I 389 (574)
T COG1080 311 EEEQFEAYKAVLEAMG-GKPVIIRTLDIGGDKPLPYLNLPKEENPFLGYRAIRLSLERPEIFRTQLRAILRASAHGNLRI 389 (574)
T ss_pred hHHHHHHHHHHHHHcC-CCceEEEecccCCCCcCCCCCCccccCchhhhHHHHHhhccHHHHHHHHHHHHHhhccCCeEE
Confidence 3567777766666654 55565 577885421 1 01 11121222455678899999999877778888
Q ss_pred eecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCCC
Q 011487 254 DWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHGS 333 (484)
Q Consensus 254 DwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g~ 333 (484)
=|-...+-++......++++.+++|+.++...++ ++.|-+-+..+ ...+-...+++.|||+.|=+-|+..-
T Consensus 390 M~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~-~i~lGiMIEvP--------sAa~~a~~lakevDFfSIGTNDLtQY 460 (574)
T COG1080 390 MFPMIASLEEIRWAKALLEEAKQELRAEGLAFDE-KIELGIMIEVP--------SAALIADQLAKEVDFFSIGTNDLTQY 460 (574)
T ss_pred EEeccccHHHHHHHHHHHHHHHHHHHhcCCcccc-ccceeEEEehh--------HHHHHHHHHHHhCCEeeecccHHHHH
Confidence 7766656677778888888888888876654431 23333333221 12344689999999999999886421
Q ss_pred ---CCCCCCCCCccCCCCCCccHHHHHHHHHHc
Q 011487 334 ---WENFTGLHAALNDPRSNISTSYGIGSWIQA 363 (484)
Q Consensus 334 ---w~~~~g~~spl~~~~~~~~~~~~v~~~~~~ 363 (484)
-+....-.+.+|++.+ -.+...|++-++.
T Consensus 461 tLA~DR~n~~vs~ly~pl~-PAVLrlI~~vi~~ 492 (574)
T COG1080 461 TLAVDRGNAKVSHLYDPLH-PAVLRLIKQVIDA 492 (574)
T ss_pred HHHHhcCChhhhhhcCCCC-HHHHHHHHHHHHH
Confidence 1122233455555444 2445555555544
No 123
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=54.96 E-value=95 Score=30.14 Aligned_cols=74 Identities=9% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeEEeecCCCChhhHHHHHHH
Q 011487 192 LLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG-FDGVDLDWEFPANDQDMSNLALL 270 (484)
Q Consensus 192 ~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg-fDGIDIDwE~p~~~~~~~~~~~f 270 (484)
+....+.+|+..|++|+++. +.+. .....+++.+.+-+.++.+... +|||-|-+-......+...+.++
T Consensus 105 i~~af~~ar~~~P~a~l~~N--dy~~--------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~ 174 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYN--DYNT--------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAA 174 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEe--ccCC--------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHH
Confidence 33444788888899999986 2211 1112455555554444444433 79999866321111123445555
Q ss_pred HHHHH
Q 011487 271 FKQWR 275 (484)
Q Consensus 271 lk~Lr 275 (484)
|+++.
T Consensus 175 l~~~~ 179 (254)
T smart00633 175 LDRFA 179 (254)
T ss_pred HHHHH
Confidence 55553
No 124
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=54.69 E-value=46 Score=31.43 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhc
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINK 318 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~ 318 (484)
.++.+.+.|.|-|-+.+|.. ....++++.+|+ .++...+++-+.... -.++.+.+
T Consensus 72 ~i~~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~-----------~g~k~GialnP~T~~--------~~~~~~l~ 126 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAEAT------EDPKETIKYIKE-----------AGIKAGIALNPETPV--------EELEPYLD 126 (201)
T ss_dssp HHHHHHHHT-SEEEEEGGGT------TTHHHHHHHHHH-----------TTSEEEEEE-TTS-G--------GGGTTTGC
T ss_pred HHHHHHhcCCCEEEEcccch------hCHHHHHHHHHH-----------hCCCEEEEEECCCCc--------hHHHHHhh
Confidence 35556677999999999932 233455666665 245556666543322 23566778
Q ss_pred cCceEEeeecc
Q 011487 319 YMNWVSPMCFD 329 (484)
Q Consensus 319 ~vD~v~lm~YD 329 (484)
.+|+|.+|+-+
T Consensus 127 ~vD~VlvMsV~ 137 (201)
T PF00834_consen 127 QVDMVLVMSVE 137 (201)
T ss_dssp CSSEEEEESS-
T ss_pred hcCEEEEEEec
Confidence 99999999966
No 125
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=54.44 E-value=70 Score=32.70 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----hhhHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----DQDMSNLA 268 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----~~~~~~~~ 268 (484)
.+++.++.+..++.|++|||+... .......+.|++.+..+-. + .|.|+|++--|.. .++.+.+.
T Consensus 123 ~~l~~i~~~~~~~~i~vsi~~~~~--------~~~~~~~~dy~~~~~~~~~-~-ad~iElNlScPn~~~~~~~~~~~~~~ 192 (335)
T TIGR01036 123 VLVERLKRARYKGPIGINIGKNKD--------TPSEDAKEDYAACLRKLGP-L-ADYLVVNVSSPNTPGLRDLQYKAELR 192 (335)
T ss_pred HHHHHHhhccCCCcEEEEEeCCCC--------CCcccCHHHHHHHHHHHhh-h-CCEEEEEccCCCCCCcccccCHHHHH
Confidence 344445444456889999987532 1122334566665555433 3 8999999965532 34567788
Q ss_pred HHHHHHHHHhH
Q 011487 269 LLFKQWRTSIN 279 (484)
Q Consensus 269 ~flk~Lr~~l~ 279 (484)
++++.+|++..
T Consensus 193 ~i~~~V~~~~~ 203 (335)
T TIGR01036 193 DLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 126
>PRK03995 hypothetical protein; Provisional
Probab=54.35 E-value=30 Score=34.18 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=42.4
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCH-----------HHHHHHHHHHHHHHHHh--CCCeeEEeecCCCChhhHHHHHHH
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTK-----------ETRAIFINSTIEIARKY--GFDGVDLDWEFPANDQDMSNLALL 270 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~-----------~~r~~fi~si~~~l~~y--gfDGIDIDwE~p~~~~~~~~~~~f 270 (484)
.+.++++.|||.-. ...|.+++... ..-.-=-+.+.+.+++. ++|.+-|||... ...++..+.+|
T Consensus 179 ~~~~~~iGiGGgHY-apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~-k~~~r~~i~~~ 256 (267)
T PRK03995 179 EKFKPAIGIGGGHY-APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGV-KSEDRERIIEF 256 (267)
T ss_pred cCCCEEEEECCCCc-cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCC-CHHHHHHHHHH
Confidence 47899999999765 44444433221 11000112355666664 789999999876 45667777777
Q ss_pred HHHH
Q 011487 271 FKQW 274 (484)
Q Consensus 271 lk~L 274 (484)
++++
T Consensus 257 le~~ 260 (267)
T PRK03995 257 LEEL 260 (267)
T ss_pred HHHC
Confidence 6664
No 127
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=54.11 E-value=1.1e+02 Score=34.37 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=7.4
Q ss_pred CCCCCCCCCCccEE
Q 011487 155 FPASSIDTSYFTHI 168 (484)
Q Consensus 155 ~~~~~i~~~~~ThI 168 (484)
..++++.+.+-+.|
T Consensus 1063 q~~dEls~~~~diI 1076 (1106)
T KOG0162|consen 1063 QDVDELSFKKGDII 1076 (1106)
T ss_pred CCcccccccCCCEE
Confidence 36666665444433
No 128
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=53.10 E-value=99 Score=31.40 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=42.0
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----hhhHHHHHHHHHHHHHHh
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----DQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----~~~~~~~~~flk~Lr~~l 278 (484)
.+..+++||+|... . .-.+..+.|++.+..+ .. ..|+|+|++--|.. .++.+.+.++++++|+..
T Consensus 127 ~~~plivsi~g~~~-~-------~~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~ 196 (327)
T cd04738 127 RGGPLGVNIGKNKD-T-------PLEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEER 196 (327)
T ss_pred CCCeEEEEEeCCCC-C-------cccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHH
Confidence 36889999988642 1 1122334555544443 23 38999999965532 345567778888888877
Q ss_pred H
Q 011487 279 N 279 (484)
Q Consensus 279 ~ 279 (484)
.
T Consensus 197 ~ 197 (327)
T cd04738 197 N 197 (327)
T ss_pred h
Confidence 4
No 129
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=53.06 E-value=1.2e+02 Score=29.28 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECC---CCCCchhhhhhcCCHHHHHHHHHHHHHHHHHh-C---CCeeEEeecCCCC--
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGG---GGSDPNVFSKMASTKETRAIFINSTIEIARKY-G---FDGVDLDWEFPAN-- 260 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG---~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~y-g---fDGIDIDwE~p~~-- 260 (484)
..+.++++.++++ |++|||.+.+ |......+ .......+.|.+-+..+.++| + +-|++|==|....
T Consensus 62 ~~ld~~v~~a~~~--gi~vild~h~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~ 136 (281)
T PF00150_consen 62 ARLDRIVDAAQAY--GIYVILDLHNAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGND 136 (281)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEEESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTS
T ss_pred HHHHHHHHHHHhC--CCeEEEEeccCcccccccccc---ccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCC
Confidence 5567777788777 8999998865 42111111 122233344444455666666 2 2333332221111
Q ss_pred -----hhhHHHHHHHHHHHHHHhHHhh
Q 011487 261 -----DQDMSNLALLFKQWRTSINQEA 282 (484)
Q Consensus 261 -----~~~~~~~~~flk~Lr~~l~~~~ 282 (484)
......+..+++++.+++++..
T Consensus 137 ~~~w~~~~~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 137 DANWNAQNPADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp TTTTSHHHTHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhhHHHHHHHHHHhcC
Confidence 1123667788888888887654
No 130
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=52.83 E-value=83 Score=32.26 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEE--CCCCCCchhhhhhcCC--------HH-----HHHHHHHHHHHHHHHhCCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSI--GGGGSDPNVFSKMAST--------KE-----TRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSI--GG~~~~~~~f~~l~~~--------~~-----~r~~fi~si~~~l~~ygfDGIDI 253 (484)
.+.++++++++|++ |+|+.+-. ..|.. ..+..-... .. -.+....++.+++.+|..|.|=+
T Consensus 137 rDiv~El~~A~rk~--Glk~G~Y~S~~dw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 137 RDIVGELADACRKY--GLKFGLYYSPWDWHH--PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp S-HHHHHHHHHHHT--T-EEEEEEESSSCCC--TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred CCHHHHHHHHHHHc--CCeEEEEecchHhcC--cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 46788999999988 78888655 44432 111111111 11 12255678899999999999999
Q ss_pred eecCCCChhhHHHHHHHHHHHHH
Q 011487 254 DWEFPANDQDMSNLALLFKQWRT 276 (484)
Q Consensus 254 DwE~p~~~~~~~~~~~flk~Lr~ 276 (484)
|.-.+. ..+...+..+...+|+
T Consensus 213 Dg~~~~-~~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 213 DGGWPD-PDEDWDSAELYNWIRK 234 (346)
T ss_dssp ESTTSC-CCTHHHHHHHHHHHHH
T ss_pred cCCCCc-cccccCHHHHHHHHHH
Confidence 987653 2233344445544444
No 131
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=52.25 E-value=1.8e+02 Score=26.88 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCC---eeEEeecCCCC-hhhH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFD---GVDLDWEFPAN-DQDM 264 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfD---GIDIDwE~p~~-~~~~ 264 (484)
+..+..-++.+|+. |+++ |.. .|....+ ....++=++..++.++.++++ -+-||+|.... ..-.
T Consensus 41 D~~~~~n~~~A~~a--Gl~v----G~Y-----hf~~~~~-~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~~~~~ 108 (192)
T cd06522 41 NPYAASQIANAKAA--GLKV----SAY-----HYAHYTS-AADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSSGNAT 108 (192)
T ss_pred ChHHHHHHHHHHHC--CCee----EEE-----EEEecCC-hHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCcchHH
Confidence 35566666777766 6643 221 1222222 222222233334445777764 25789997533 1222
Q ss_pred HHHHHHHHHHHH
Q 011487 265 SNLALLFKQWRT 276 (484)
Q Consensus 265 ~~~~~flk~Lr~ 276 (484)
.....|++++++
T Consensus 109 ~~~~~F~~~v~~ 120 (192)
T cd06522 109 ANVNAFWQTMKA 120 (192)
T ss_pred HHHHHHHHHHHH
Confidence 334555555544
No 132
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.03 E-value=70 Score=31.90 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=50.3
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCC---CCCchhhhh-----------------hcCCHHHHHHHHHHHH
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGG---GSDPNVFSK-----------------MASTKETRAIFINSTI 240 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~---~~~~~~f~~-----------------l~~~~~~r~~fi~si~ 240 (484)
..++....-...+++++.||++ |+|+++.+-=. ......+.. -..+++.++-|.+.+.
T Consensus 65 ~ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 65 GYSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred eeEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHH
Confidence 4555543334557889999987 89999877321 000111111 1356788888999999
Q ss_pred HHHHHhCCCeeEEeec
Q 011487 241 EIARKYGFDGVDLDWE 256 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE 256 (484)
+.+.++|+||+=+|+-
T Consensus 143 ~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 143 RPLEKQGVDFWWLDWQ 158 (292)
T ss_pred HHHHhcCCcEEEecCC
Confidence 9999999999999983
No 133
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=51.88 E-value=3.1e+02 Score=28.92 Aligned_cols=248 Identities=10% Similarity=0.087 Sum_probs=123.8
Q ss_pred eeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEE-EEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 175 PEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKI-LLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 175 i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~Kv-llSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
+|..||- +..+...|.+++..+.++. +... .+-+||--.++..|... ...+..++-.+.|..+++. ||+=|+|
T Consensus 50 Vdq~GGY---TGmtP~dF~~~V~~iA~~~-gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~A-GF~kIHL 123 (421)
T PRK15052 50 VNQFGGY---TGMTPADFREFVYGIADKV-GFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRA-GFSKIHL 123 (421)
T ss_pred ccccCCc---CCCCHHHHHHHHHHHHHHc-CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHc-CCceEEe
Confidence 4444543 4456688888887766642 3332 34455654446556554 3344455555555555554 8999999
Q ss_pred eecCCC-C----------------------------------------------hhh---------HHHHHHHHHHHHHH
Q 011487 254 DWEFPA-N----------------------------------------------DQD---------MSNLALLFKQWRTS 277 (484)
Q Consensus 254 DwE~p~-~----------------------------------------------~~~---------~~~~~~flk~Lr~~ 277 (484)
|.-..- . ..+ .+.+..+|..+|++
T Consensus 124 D~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIGTEvP~pGGa~~~~~~~~vT~~e~~~~ti~~h~~a 203 (421)
T PRK15052 124 DASMSCADDPIPLAPETVAERAAVLCQAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHVTRVEDAANTLRTHQKA 203 (421)
T ss_pred cCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccccCCCCcchhhccccCCCCHHHHHHHHHHHHHH
Confidence 874320 0 001 45566777777777
Q ss_pred hHHhhhhcCCCCeEEEEEecccccccccCCCCCcChh---hhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHH
Q 011487 278 INQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIE---AINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTS 354 (484)
Q Consensus 278 l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~---~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~ 354 (484)
|.+.+-..-. .-.+.+.+++...+. ...-..|+.+ .|.+.++--. +.|.-| ..++...
T Consensus 204 f~~~GL~~aw-~rvi~vVVQpGvef~-~~~V~~y~~~~A~~Ls~~~~~~~-lvfEaH----------------STDYQt~ 264 (421)
T PRK15052 204 FIARGLTEAL-TRVIAIVVQPGVEFD-HSNIIHYQPQEAQALSAWIENTP-MVYEAH----------------STDYQTR 264 (421)
T ss_pred HHHcCchhhh-ccceEEEEeCCeeeC-CCCeeecCHHHHHHHHHHhcCCC-EEEeec----------------CcccCCH
Confidence 7665432111 114555555544331 1012234432 2222222211 111111 1234557
Q ss_pred HHHHHHHHcCCCCCCEeecCccceee--eeecCCCCCCCCCCcCCCCCCCcccchHHHHH-Hh--hcCCceEEEcCCCc-
Q 011487 355 YGIGSWIQAGVPAQKLVMGLPLYGRT--WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVK-FN--MEGTAAVVFDATPV- 428 (484)
Q Consensus 355 ~~v~~~~~~Gvp~~KlvLGlp~YG~~--~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~-~l--~~~g~~~~~D~~s~- 428 (484)
.++..+.+.|+..-|+.-+|.|-=|. |.+.. -...+ .+. ...-...+.++ .+ ....|..++..+..
T Consensus 265 ~al~~lv~dgfaiLKVGPalTfalreAlfaL~~-ie~el----~~~---~~~s~l~~~le~~m~~~p~~W~k~y~g~~~~ 336 (421)
T PRK15052 265 QAYRELVRDHFAILKVGPALTFALREAIFALAQ-IEQEL----IAP---ENRSRCLAVIEEVMLDEPQYWKKYYRPGFSD 336 (421)
T ss_pred HHHHHHHhcCceeeeechhHhHHHHHHHHHHHH-HHHHh----cCc---cccchHHHHHHHHHHhChhhhhhhcCCCHHH
Confidence 78888889999999998877665332 22111 00000 000 01111233332 22 23456666554431
Q ss_pred ----eeEEEeCCEEEEECCHHHHHHHHHHHH
Q 011487 429 ----AYHSFAGDSWIGYDDVLSIKLKVQFAK 455 (484)
Q Consensus 429 ----~~y~y~~~~~isydd~~Sl~~K~~~ak 455 (484)
-.|.|.+..-.+|.+++-..+.-++..
T Consensus 337 ~~~~r~~s~sDRiRYyw~~p~v~~a~~~L~~ 367 (421)
T PRK15052 337 ALLDIHFSLSDRIRYYWPHSRIKNSVETLIV 367 (421)
T ss_pred HHHHhccchhhceEEecCCHHHHHHHHHHHH
Confidence 367777766666888887777666653
No 134
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=51.25 E-value=56 Score=34.11 Aligned_cols=85 Identities=13% Similarity=0.019 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhh-------hcCCHHHHHHH---HHHHHHHHHHhCCCeeEEeecCC
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSK-------MASTKETRAIF---INSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~-------l~~~~~~r~~f---i~si~~~l~~ygfDGIDIDwE~p 258 (484)
.+.++++.+++|++ |+|+-+-...+......+.. -...+...+-+ ..+|.++|.+||-|.+=+|+..+
T Consensus 127 rDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~ 204 (384)
T smart00812 127 RDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWE 204 (384)
T ss_pred cchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 46788898999988 88888755433211111111 01111222223 68999999999999999998765
Q ss_pred CChhhHHHHHHHHHHHHH
Q 011487 259 ANDQDMSNLALLFKQWRT 276 (484)
Q Consensus 259 ~~~~~~~~~~~flk~Lr~ 276 (484)
.... .-...+|++.+|+
T Consensus 205 ~~~~-~~~~~~l~~~~~~ 221 (384)
T smart00812 205 APDD-YWRSKEFLAWLYN 221 (384)
T ss_pred Cccc-hhcHHHHHHHHHH
Confidence 3222 2233344444443
No 135
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=51.21 E-value=89 Score=26.99 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=49.1
Q ss_pred CcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhh
Q 011487 205 HIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEA 282 (484)
Q Consensus 205 ~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~ 282 (484)
|.-=++-.|.--+. =.|. +-.-..++=++.+.++|++.|++.--+++++. +..+.+.|++.++++-+++.+.+
T Consensus 53 GaDGV~v~GC~~ge-CHy~---~GN~ka~rR~~~lke~l~elgie~eRv~~~wi-Sa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 53 GADGVLVAGCKIGE-CHYI---SGNYKAKRRMELLKELLKELGIEPERVRVLWI-SAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred CCCeEEEecccccc-eeee---ccchHHHHHHHHHHHHHHHhCCCcceEEEEEE-ehhhHHHHHHHHHHHHHHHHHhC
Confidence 55555556665331 1121 11122333456678889999998888888776 67889999999999999988754
No 136
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=51.05 E-value=72 Score=36.14 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhCCCcEEE---EEECC-CCCC-chhh--------------------hh-----------hcCCHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKIL---LSIGG-GGSD-PNVF--------------------SK-----------MASTKETRA 233 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~Kvl---lSIGG-~~~~-~~~f--------------------~~-----------l~~~~~~r~ 233 (484)
..++.+++.+|+++|++|-+ .++-| |++- ++.. .. -+-+++...
T Consensus 288 ~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~~ 367 (747)
T PF05691_consen 288 SGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDAF 367 (747)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHHH
Confidence 46788999999998888644 55533 4321 1000 00 124677889
Q ss_pred HHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 234 IFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 234 ~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
+|-+..-++|.+-|+|||-+|-+..
T Consensus 368 ~FYd~~hsyL~s~GVDgVKVD~Q~~ 392 (747)
T PF05691_consen 368 RFYDDFHSYLASAGVDGVKVDVQAI 392 (747)
T ss_pred HHHHHHHHHHHHcCCCEEEEchhhh
Confidence 9999999999999999999998754
No 137
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=50.93 E-value=67 Score=33.14 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=55.7
Q ss_pred CccEEE---EeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhh-----------------
Q 011487 164 YFTHIY---YAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFS----------------- 223 (484)
Q Consensus 164 ~~ThIi---~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~----------------- 223 (484)
+++.|- ++|..+.+..|...+. .+.++++.++++ |+||+|.+..... +..+.
T Consensus 23 G~n~vri~~~~W~~lEP~eG~ydF~-----~lD~~l~~a~~~--Gi~viL~~~~~~~-P~Wl~~~~Pe~~~~~~~g~~~~ 94 (374)
T PF02449_consen 23 GFNTVRIGEFSWSWLEPEEGQYDFS-----WLDRVLDLAAKH--GIKVILGTPTAAP-PAWLYDKYPEILPVDADGRRRG 94 (374)
T ss_dssp T-SEEEE-CCEHHHH-SBTTB---H-----HHHHHHHHHHCT--T-EEEEEECTTTS--HHHHCCSGCCC-B-TTTSBEE
T ss_pred CCCEEEEEEechhhccCCCCeeecH-----HHHHHHHHHHhc--cCeEEEEeccccc-ccchhhhcccccccCCCCCcCc
Confidence 566665 3566677766666553 356677777766 8999999864321 11111
Q ss_pred ------hhcCCHHHHHHHHHHHHHHHHHhC----CCeeEEeecCCC-ChhhHHHHHHHHHHHHHHh
Q 011487 224 ------KMASTKETRAIFINSTIEIARKYG----FDGVDLDWEFPA-NDQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 224 ------~l~~~~~~r~~fi~si~~~l~~yg----fDGIDIDwE~p~-~~~~~~~~~~flk~Lr~~l 278 (484)
.-..++.-|+.+.+-+.++++.|+ +-|++||=|.-. ..-.......|.+-|+++.
T Consensus 95 ~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY 160 (374)
T PF02449_consen 95 FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKY 160 (374)
T ss_dssp CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHH
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHh
Confidence 113455556555555555666665 568889888533 1222233344444444443
No 138
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=50.58 E-value=51 Score=33.61 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----------hhhHHHHHHHH
Q 011487 203 NSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----------DQDMSNLALLF 271 (484)
Q Consensus 203 n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----------~~~~~~~~~fl 271 (484)
.....+++.|+|.+- +.|++ .+..++++|||||||+.-.|.. ..+.+...+++
T Consensus 62 ~~e~p~~vQl~g~~p---------------~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv 125 (333)
T PRK11815 62 PEEHPVALQLGGSDP---------------ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCV 125 (333)
T ss_pred CCCCcEEEEEeCCCH---------------HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHH
Confidence 346688999988541 23333 3556778999999999876531 12334445556
Q ss_pred HHHHHHh
Q 011487 272 KQWRTSI 278 (484)
Q Consensus 272 k~Lr~~l 278 (484)
+++|+++
T Consensus 126 ~avr~~v 132 (333)
T PRK11815 126 KAMKDAV 132 (333)
T ss_pred HHHHHHc
Confidence 6666554
No 139
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=49.98 E-value=61 Score=32.88 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=38.9
Q ss_pred CCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-----------hhHHHHHHHH
Q 011487 203 NSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-----------QDMSNLALLF 271 (484)
Q Consensus 203 n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-----------~~~~~~~~fl 271 (484)
.....+++.|+|.+ . +.|+ ..+..++++|||+|||+.--|... .+.+...+++
T Consensus 52 ~~e~p~~vQl~g~~--p-------------~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 52 PEESPVALQLGGSD--P-------------NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred CCCCcEEEEEccCC--H-------------HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 34667889998853 1 2232 245566778999999999766321 3345566777
Q ss_pred HHHHHHh
Q 011487 272 KQWRTSI 278 (484)
Q Consensus 272 k~Lr~~l 278 (484)
+++++++
T Consensus 116 ~av~~~~ 122 (318)
T TIGR00742 116 KAMQEAV 122 (318)
T ss_pred HHHHHHh
Confidence 7777765
No 140
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.53 E-value=1.4e+02 Score=29.44 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCccc
Q 011487 48 MPPDHPWPAPVPPSPSYIAGPGMDPYTEV 76 (484)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (484)
-|-+|+.+ .|++|..-|+++|-+-..+
T Consensus 186 Gp~~~syp--~Py~p~p~~q~p~p~~p~~ 212 (338)
T KOG0917|consen 186 GPTQPSYP--SPYDPSPYHQDPMPSGPYT 212 (338)
T ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCCC
Confidence 35567766 7777888888777554333
No 141
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=49.39 E-value=2.6e+02 Score=29.53 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=120.6
Q ss_pred cCcChHHHHHHHHHHHhhCCCcEE-EEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC---
Q 011487 185 TLLDHAKLLELVGTLRVQNSHIKI-LLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN--- 260 (484)
Q Consensus 185 ~~~~~~~~~~~i~~lk~~n~~~Kv-llSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~--- 260 (484)
+..+...|.+++..+.++. +... .+-+||--.++..|..+ ...+..++-.+.|..+++. ||+=|+||.-..-.
T Consensus 60 TGmtP~dF~~~V~~iA~~~-gf~~~~iiLGGDHLGPn~Wq~l-pa~eAM~~A~~li~ayV~A-GF~kIHLD~Sm~cagdp 136 (426)
T PRK15458 60 TGMTPADFRGFVCQLADSL-NFPQEALILGGDHLGPNRWQNL-PAAQAMANADDLIKSYVAA-GFKKIHLDCSMSCADDP 136 (426)
T ss_pred CCCCHHHHHHHHHHHHHHc-CCChhhEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHc-CCceEEecCCCCCCCCC
Confidence 3445678888887766642 3332 34455654446556543 3345555555555555554 88888888743110
Q ss_pred ----h--------------------------------------------------hhHHHHHHHHHHHHHHhHHhhhhcC
Q 011487 261 ----D--------------------------------------------------QDMSNLALLFKQWRTSINQEARITN 286 (484)
Q Consensus 261 ----~--------------------------------------------------~~~~~~~~flk~Lr~~l~~~~~~~~ 286 (484)
+ ...+.+..+|..+|++|.+.+-..-
T Consensus 137 ~pL~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvIGTEvP~pGGa~~~~~~~~vTs~e~~~~Ti~~h~~af~~~GL~~a 216 (426)
T PRK15458 137 IPLTDEIVAERAARLAKIAEETCREHFGESDLVYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAI 216 (426)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeccccCCCCchhhhccccCCCCHHHHHHHHHHHHHHHHHcCchhh
Confidence 0 1123455556666666655432111
Q ss_pred CCCeEEEEEecccccccccCCCCCcCh---hhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHc
Q 011487 287 TSPLLLTAAVYFASRFTIYGGPRGYPI---EAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQA 363 (484)
Q Consensus 287 ~~~~~Lsvav~~~~~~~~~~~~~~~d~---~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~~ 363 (484)
. .-.+.+.|++...+.. ..-..|+. +.|.+.++-.-.|.|.=| ..++....++..+.+.
T Consensus 217 w-~rvi~~VVQpGVef~~-~~V~~y~~~~A~~Ls~~~~~~~~lvfEaH----------------STDYQt~~al~~lv~d 278 (426)
T PRK15458 217 W-PRIIGLVVQPGVEFDH-TNVIDYQPEKASALSQMVENYETLVFEAH----------------STDYQTPQALRQLVID 278 (426)
T ss_pred h-ccceEEEEeCCeeecC-cCccccCHHHHHHHHHHHHhCCCceeecC----------------CccCCCHHHHHHHHhc
Confidence 0 1144444544433310 01223332 233333333333333322 2234567788888999
Q ss_pred CCCCCCEeecCccceee--eeecCCCCCCCCCCcCCCCCCCcccchHHHHH-Hh-h-cCCceEEEcCCCc-----eeEEE
Q 011487 364 GVPAQKLVMGLPLYGRT--WKLKDPDVNGIGAPALGVGPGDGVLTYNQIVK-FN-M-EGTAAVVFDATPV-----AYHSF 433 (484)
Q Consensus 364 Gvp~~KlvLGlp~YG~~--~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~-~l-~-~~g~~~~~D~~s~-----~~y~y 433 (484)
|+..-|+.-+|.|-=|. |.+..- .... .+. ...-...+.++ .+ . ...|..++..+.. ..|.|
T Consensus 279 gfaiLKVGPaLTfalReAlfaL~~i-e~el----~~~---~~~s~l~~~le~~ml~~p~~W~k~Y~g~~~~~~l~r~ys~ 350 (426)
T PRK15458 279 HFAILKVGPALTFALREALFSLAAI-EEEL----VPA---KACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSY 350 (426)
T ss_pred CceeeeechhHhHHHHHHHHHHHHH-HHHh----cCc---cccchHHHHHHHHHHhChhhhhhhcCCCHHHHHHHHhcCc
Confidence 99999998887765332 221110 0000 000 11112233333 22 2 3456666655432 36777
Q ss_pred eCCEEEEECCHHHHHHHHHHHH
Q 011487 434 AGDSWIGYDDVLSIKLKVQFAK 455 (484)
Q Consensus 434 ~~~~~isydd~~Sl~~K~~~ak 455 (484)
++..-.+|.+++-..+.-++..
T Consensus 351 sDRiRYYw~~p~v~~a~~~L~~ 372 (426)
T PRK15458 351 SDRVRYYWPDSQIDDAFAHLVR 372 (426)
T ss_pred ccceeeecCCHHHHHHHHHHHH
Confidence 7777667888887777666653
No 142
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=48.46 E-value=94 Score=35.36 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhCCCcE---EEEEECC-CCCC---chhh----------------------------hhhcCCHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIK---ILLSIGG-GGSD---PNVF----------------------------SKMASTKETRAI 234 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~K---vllSIGG-~~~~---~~~f----------------------------~~l~~~~~~r~~ 234 (484)
..++.+++.+|++++++| |+.++-| |++- ...+ .-.+-+++...+
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 468899999999987665 4456633 4331 1000 011345788899
Q ss_pred HHHHHHHHHHHhCCCeeEEeecC
Q 011487 235 FINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 235 fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
|-+.+.++|..-|+|||-+|-++
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999875
No 143
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=48.10 E-value=38 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCe-eEEeecCCCChhhHHHHHHHHHHHHHHhH
Q 011487 237 NSTIEIARKYGFDG-VDLDWEFPANDQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 237 ~si~~~l~~ygfDG-IDIDwE~p~~~~~~~~~~~flk~Lr~~l~ 279 (484)
+.+++.|++.|+|| |.|.||... .+..+.+.+-++-||..+-
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~-~~~~~G~~~a~~~lr~~l~ 45 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDAL-MDPEEGAREAAAFLRKLLI 45 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STT-TSHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCceEEEEeecCC-CCHHHHHHHHHHHHHHhcC
Confidence 35788899999999 467777543 3345666666666666554
No 144
>PLN00196 alpha-amylase; Provisional
Probab=48.01 E-value=74 Score=33.76 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.2
Q ss_pred cChHHHHHHHHHHHhhCCCcEEEEEE
Q 011487 187 LDHAKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 187 ~~~~~~~~~i~~lk~~n~~~KvllSI 212 (484)
.+.+.++++++++|++ |+|||+-+
T Consensus 89 Gt~~elk~Lv~~aH~~--GIkVilDv 112 (428)
T PLN00196 89 GNEAQLKSLIEAFHGK--GVQVIADI 112 (428)
T ss_pred CCHHHHHHHHHHHHHC--CCEEEEEE
Confidence 3567899999999998 89999765
No 145
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=47.61 E-value=2.7e+02 Score=26.93 Aligned_cols=56 Identities=25% Similarity=0.495 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC-----CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG-----GGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG-----G~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
..+.+.++.+++...++++|+.+- |.. -.+.+.|.++. ..++..++.|=|||.++.
T Consensus 47 ~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~---------~~~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 47 DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYG---------QFTNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCC---------CCCHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 445666677777555789999993 422 12445554443 345555678999999874
No 146
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=47.44 E-value=65 Score=36.34 Aligned_cols=66 Identities=23% Similarity=0.406 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE-------C---CCCC-----Cch---------hh--------hhhcCCHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI-------G---GGGS-----DPN---------VF--------SKMASTKETRAIFIN 237 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI-------G---G~~~-----~~~---------~f--------~~l~~~~~~r~~fi~ 237 (484)
..++.+|++||++ |+.|||-| | |-.. +.. .+ .--.+.+-.|+-.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4678888888887 99999877 1 1100 000 11 111344677888899
Q ss_pred HHHHHHHHhCCCeeEEeecC
Q 011487 238 STIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 238 si~~~l~~ygfDGIDIDwE~ 257 (484)
+|.=++++|+.||.-+|.-.
T Consensus 343 sLrYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred HHHHHHHHhCCCceeecchh
Confidence 99999999999999999864
No 147
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.32 E-value=60 Score=32.78 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=46.8
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCC-CC------------------------------chhhhhhcCCH
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGG-SD------------------------------PNVFSKMASTK 229 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~-~~------------------------------~~~f~~l~~~~ 229 (484)
..++....-...+++++.||++ |+|+++.|--.- .+ ...+-+ +.++
T Consensus 61 ~f~wd~~~FPdp~~mi~~L~~~--G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp 137 (317)
T cd06598 61 NLDWDRKAFPDPAGMIADLAKK--GVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLID-WFDP 137 (317)
T ss_pred eeEeccccCCCHHHHHHHHHHc--CCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccC-CCCH
Confidence 4555443334457888999998 899988772110 00 111222 3478
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 230 ETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 230 ~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
+.|+=|.+.+.++ .++|+||+=+|+-.
T Consensus 138 ~a~~w~~~~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 138 AAQAWFHDNYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHHHHHHHHh-hhCCccEEEecCCC
Confidence 8888887776655 78999999999943
No 148
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=47.10 E-value=70 Score=36.14 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhCCCcEE---EEEECC-CCCC---chhh------------------h-----------hhcCCHHHHHH
Q 011487 191 KLLELVGTLRVQNSHIKI---LLSIGG-GGSD---PNVF------------------S-----------KMASTKETRAI 234 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~Kv---llSIGG-~~~~---~~~f------------------~-----------~l~~~~~~r~~ 234 (484)
.++.+++.+|++++++|= +.++-| |++- ...+ . -.+-+++...+
T Consensus 306 Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~~ 385 (777)
T PLN02711 306 GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAYQ 385 (777)
T ss_pred cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHHH
Confidence 567789999998776654 456633 4431 1000 0 01356788899
Q ss_pred HHHHHHHHHHHhCCCeeEEeecCCCC--hhhHHHHHHHHHHHHHHhHH
Q 011487 235 FINSTIEIARKYGFDGVDLDWEFPAN--DQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 235 fi~si~~~l~~ygfDGIDIDwE~p~~--~~~~~~~~~flk~Lr~~l~~ 280 (484)
|-+...++|.+-|+|||-+|-.+... ..+...-+++.+...++|.+
T Consensus 386 FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~ 433 (777)
T PLN02711 386 MYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTA 433 (777)
T ss_pred HHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999865311 11112234455555555544
No 149
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.97 E-value=51 Score=33.34 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCC--------------------Cc-----------hhhhhhcCCHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGS--------------------DP-----------NVFSKMASTKETRAIFINS 238 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~--------------------~~-----------~~f~~l~~~~~~r~~fi~s 238 (484)
...+++++.||++ |+|+++.|-=.-. .. ..+-+ +.+++.|+=|.+.
T Consensus 73 Pdp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~ 149 (317)
T cd06599 73 PDPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEGREWWKEG 149 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeec-CCChHHHHHHHHH
Confidence 3467899999998 8999986521100 00 01111 3578899888888
Q ss_pred HHHHHHHhCCCeeEEeecC
Q 011487 239 TIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~ 257 (484)
+.+.+.+.|+||+=+|.-.
T Consensus 150 ~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 150 VKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 8899999999999999843
No 150
>PRK13042 superantigen-like protein; Reviewed
Probab=46.73 E-value=35 Score=33.70 Aligned_cols=15 Identities=40% Similarity=0.487 Sum_probs=8.0
Q ss_pred cchhhhhhhccCCcc
Q 011487 15 KISTMAKYKFMSPLI 29 (484)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (484)
||.|+||-...--|+
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (291)
T PRK13042 2 KITTIAKTSLALGLL 16 (291)
T ss_pred ceehhhhhHhhhhhh
Confidence 456666655444443
No 151
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=46.19 E-value=40 Score=33.95 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=11.5
Q ss_pred HHhCCCeeEEeecCC
Q 011487 244 RKYGFDGVDLDWEFP 258 (484)
Q Consensus 244 ~~ygfDGIDIDwE~p 258 (484)
++|-+++|.|.+..+
T Consensus 186 ~~~~L~~v~l~~~~p 200 (306)
T PF01299_consen 186 NSFYLSSVSLTYNLP 200 (306)
T ss_pred CcEEEEEEEEEEEcc
Confidence 557788999988753
No 152
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.76 E-value=98 Score=27.89 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
...+.++++.+++++++.+|++..---.. ..... ........+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~-~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY-YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc-ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35778899999998888888764311000 00000 12334555677788888888888766664
No 153
>PRK14866 hypothetical protein; Provisional
Probab=45.20 E-value=53 Score=34.94 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=42.3
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCH----------HHHHHH-HH-HHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHH
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTK----------ETRAIF-IN-STIEIARKYGFDGVDLDWEFPANDQDMSNLALLF 271 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~----------~~r~~f-i~-si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~fl 271 (484)
.+.++++.|||.-. ...|.+++... -....+ -. .+.+.+++.+.|.+-|||... ...++..+..++
T Consensus 183 ~~~~~~iG~GGgHY-apr~t~i~le~~~~~GHi~pky~l~~l~~~~~i~~a~~~~~~~~a~iD~Ks~-k~~~r~~i~~~l 260 (451)
T PRK14866 183 HTDRPLVGFGGGHY-APRQTRIVLETDWAFGHIAADWQLGALGDPAVLRAAFEASGADAAYIDRKAM-SSGDRPRLEALL 260 (451)
T ss_pred cCCCEEEEeCCCCc-chhHHHHhhcCCeeEEeeccccchhccCcHHHHHHHHHhcCCCEEEEecCCC-CHHHHHHHHHHH
Confidence 46799999999765 44444433211 000000 11 445556667899999999876 456677777776
Q ss_pred HHH
Q 011487 272 KQW 274 (484)
Q Consensus 272 k~L 274 (484)
+++
T Consensus 261 ~~l 263 (451)
T PRK14866 261 EEL 263 (451)
T ss_pred HHC
Confidence 664
No 154
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=44.79 E-value=1.5e+02 Score=28.38 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=43.4
Q ss_pred HHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-------------hh
Q 011487 197 GTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-------------QD 263 (484)
Q Consensus 197 ~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-------------~~ 263 (484)
+.++ +.++.++++=|.|++.+ | +.-+....++....+++|+-|=|-+|... ..
T Consensus 10 ~~l~-~~~~~~vlvfVHGyn~~---f----------~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s 75 (233)
T PF05990_consen 10 QRLA-KSPDKEVLVFVHGYNNS---F----------EDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFS 75 (233)
T ss_pred HHHh-hCCCCeEEEEEeCCCCC---H----------HHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHH
Confidence 3444 33589999999999741 2 22334455677778899888888777521 22
Q ss_pred HHHHHHHHHHHHHH
Q 011487 264 MSNLALLFKQWRTS 277 (484)
Q Consensus 264 ~~~~~~flk~Lr~~ 277 (484)
...|..||+.|++.
T Consensus 76 ~~~l~~~L~~L~~~ 89 (233)
T PF05990_consen 76 GPALARFLRDLARA 89 (233)
T ss_pred HHHHHHHHHHHHhc
Confidence 45567777777665
No 155
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=44.21 E-value=67 Score=32.84 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECC---CCC-----CchhhhhhcCCHHH---HHHHHHHHHHHHHHhCCCeeEEeecCC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGG---GGS-----DPNVFSKMASTKET---RAIFINSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG---~~~-----~~~~f~~l~~~~~~---r~~fi~si~~~l~~ygfDGIDIDwE~p 258 (484)
+...++.+++|+. |+||||-+.= |.+ .+..|..+ +-.+. ...+...+++.|++ .|+..||-..
T Consensus 58 ~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~-~~~~l~~~v~~yT~~vl~~l~~---~G~~pd~VQV 131 (332)
T PF07745_consen 58 EDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANL-SFDQLAKAVYDYTKDVLQALKA---AGVTPDMVQV 131 (332)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSS-SHHHHHHHHHHHHHHHHHHHHH---TT--ESEEEE
T ss_pred HHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCC-CHHHHHHHHHHHHHHHHHHHHH---CCCCccEEEe
Confidence 4455666666666 9999999952 111 02222221 11223 33445555555555 5688888644
Q ss_pred CC------------hhhHHHHHHHHHHHHHHhHH
Q 011487 259 AN------------DQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 259 ~~------------~~~~~~~~~flk~Lr~~l~~ 280 (484)
++ ..+.+++..||++-.+++++
T Consensus 132 GNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~ 165 (332)
T PF07745_consen 132 GNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVRE 165 (332)
T ss_dssp SSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHT
T ss_pred CccccccccCcCCCccCHHHHHHHHHHHHHHHHh
Confidence 42 35567777777776677665
No 156
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=44.18 E-value=33 Score=33.61 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=29.7
Q ss_pred eEEeeeccCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHH-cCCCCCCEeecCccceee
Q 011487 322 WVSPMCFDYHGSWENFTGLHAALNDPRSNISTSYGIGSWIQ-AGVPAQKLVMGLPLYGRT 380 (484)
Q Consensus 322 ~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~~~v~~~~~-~Gvp~~KlvLGlp~YG~~ 380 (484)
-+|+|+|||.|- +...|-++-. .....++++.+.+.+ .| +.++|+| ||++
T Consensus 88 n~nv~~~DYSGy-G~S~G~psE~---n~y~Di~avye~Lr~~~g-~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGY-GRSSGKPSER---NLYADIKAVYEWLRNRYG-SPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecccc-cccCCCcccc---cchhhHHHHHHHHHhhcC-CCceEEE----EEec
Confidence 478999999874 4444444432 112345666666553 45 7777775 5654
No 157
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=42.42 E-value=14 Score=31.42 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCCCCEeecCc
Q 011487 356 GIGSWIQAGVPAQKLVMGLP 375 (484)
Q Consensus 356 ~v~~~~~~Gvp~~KlvLGlp 375 (484)
..+.++++|||++.||||+-
T Consensus 79 Ia~eLve~GVpk~dIVLgF~ 98 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGFH 98 (111)
T ss_dssp HHHHHHHTT--GGGEEETTS
T ss_pred HHHHHHHcCCCHHHEEEccC
Confidence 34677899999999999974
No 158
>PRK09505 malS alpha-amylase; Reviewed
Probab=42.29 E-value=62 Score=36.52 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
.+++-|+.+++.+..+|+++|+||+-||--
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 355888899999999999999999999973
No 159
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=41.45 E-value=90 Score=31.58 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCC-CCchh-hhhh----------------------------cCCHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGG-SDPNV-FSKM----------------------------ASTKETRAIFINST 239 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~-~~~~~-f~~l----------------------------~~~~~~r~~fi~si 239 (484)
...+++++.||++ |+||++.|--.- .+... |..+ ..+++.|+=+.+.+
T Consensus 71 Pdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 71 PGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 4467899999998 899998774321 01111 1221 24578999999999
Q ss_pred HHHHHHhCCCeeEEeec
Q 011487 240 IEIARKYGFDGVDLDWE 256 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE 256 (484)
.+++.++|+||+=+|+-
T Consensus 149 ~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 149 KEMLLDLGLSGWMADFG 165 (317)
T ss_pred HHHhhhcCCcEEEecCC
Confidence 99989999999999983
No 160
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=41.40 E-value=1.5e+02 Score=26.90 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----hh----hH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----DQ----DM 264 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----~~----~~ 264 (484)
..++.|+.. |++|+..|....- ...+ .++...||-|-+++-+.+. .. .+
T Consensus 44 ~nl~~L~~~--g~~V~~~VDat~l-~~~~-------------------~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr 101 (166)
T PF10354_consen 44 ENLEELREL--GVTVLHGVDATKL-HKHF-------------------RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNR 101 (166)
T ss_pred HHHHHHhhc--CCccccCCCCCcc-cccc-------------------cccCCcCCEEEEeCCCCCCCccchhHHHHHHH
Confidence 455667544 8999998877653 2211 3455679999999988861 11 23
Q ss_pred HHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCC
Q 011487 265 SNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYH 331 (484)
Q Consensus 265 ~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~ 331 (484)
.-+..|++..+.-|... ..+.||+.-. . ....+++.++++...++.+...+|.
T Consensus 102 ~Ll~~Ff~Sa~~~L~~~------G~IhVTl~~~----~----py~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 102 ELLRGFFKSASQLLKPD------GEIHVTLKDG----Q----PYDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHHHHhcCCC------CEEEEEeCCC----C----CCccccHHHHHHhcCCEEEEEecCC
Confidence 34555555555555432 2244544422 1 1356689999999999999988875
No 161
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=41.14 E-value=73 Score=30.85 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=54.6
Q ss_pred EEEEeeeeeeCCC---CEEEEcCc--ChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcC---CHHHHHHHHHH
Q 011487 167 HIYYAFLLPEPKT---FKLNVTLL--DHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMAS---TKETRAIFINS 238 (484)
Q Consensus 167 hIi~af~~i~~~g---g~l~~~~~--~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~---~~~~r~~fi~s 238 (484)
.|+|+...+|..- -++-+-.. .++.-.+.++.+|++ .|+++++|-=.- ...|..+.+ +...|..+++.
T Consensus 36 div~~~~l~D~keiPEvDValVEGsV~~ee~lE~v~ElRek---akivVA~GsCA~-~Ggv~~~~~~s~~e~l~~~y~~~ 111 (247)
T COG1941 36 DIVYCPTLVDEKEIPEVDVALVEGSVCDEEELELVKELREK---AKIVVALGSCAV-TGGVQGLRNKSGEELLRPVYGDA 111 (247)
T ss_pred cEEEeecccccccCCcccEEEEecccCcHHHHHHHHHHHHh---CcEEEEEecchh-cCCchhhhhccccccchhhhhcc
Confidence 5677777666431 01111111 123334556777775 899999986432 233333332 22223333221
Q ss_pred HHH----HHHHhCCCeeEEeecCCCChhhHHHHHHHHHHH
Q 011487 239 TIE----IARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274 (484)
Q Consensus 239 i~~----~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~L 274 (484)
... .+.-- -|=|++|+.-|+=+.+.+.+.++++.|
T Consensus 112 ~~~~~~~~v~Pl-~evI~VD~~IpGCPP~~e~I~~al~al 150 (247)
T COG1941 112 KSTFNEESVVPL-GEVIDVDYAIPGCPPSPEEIARALTAL 150 (247)
T ss_pred cCCCCccceEEc-hheeeeeeecCCCCcCHHHHHHHHHHH
Confidence 111 11111 267999999988777788887777776
No 162
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=41.02 E-value=67 Score=25.71 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHhCCCeeEEeecCCCC--------------hhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCC
Q 011487 242 IARKYGFDGVDLDWEFPAN--------------DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGG 307 (484)
Q Consensus 242 ~l~~ygfDGIDIDwE~p~~--------------~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~ 307 (484)
+|.++|.|.--+-||--+. ....+.+..+++++.+.+++.. +...||+.....
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d-----P~~pvt~g~~~~-------- 67 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD-----PSQPVTSGFWGG-------- 67 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT------TTS-EE--B--S--------
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC-----CCCcEEeecccC--------
Confidence 4677787777777763211 1124678888888888887653 445566554221
Q ss_pred CCCcChhhhh-ccCceEEeeec
Q 011487 308 PRGYPIEAIN-KYMNWVSPMCF 328 (484)
Q Consensus 308 ~~~~d~~~l~-~~vD~v~lm~Y 328 (484)
....+..+. ..+|++.+-.|
T Consensus 68 -~~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 68 -DWEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp --TTHHHHS--TT-SSEEB-EE
T ss_pred -CHHHHHHhchhcCCEEeeecC
Confidence 111255555 78898887665
No 163
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.15 E-value=79 Score=35.65 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=21.9
Q ss_pred CCCCCccccCCCCCCCcccccCCCC-CCCCCCCCCCCCCC
Q 011487 58 VPPSPSYIAGPGMDPYTEVTPYPVV-PASDPHTAVPTSPV 96 (484)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~ 96 (484)
.--+|+.-.|.||++....-+.|-+ |...+..+..-+|+
T Consensus 100 ~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv 139 (1118)
T KOG1029|consen 100 PRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPV 139 (1118)
T ss_pred CcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCc
Confidence 3347888888999976655444433 44444333333333
No 164
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.00 E-value=78 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeEEee
Q 011487 226 ASTKETRAIFINSTIEIARKYGFDGVDLDW 255 (484)
Q Consensus 226 ~~~~~~r~~fi~si~~~l~~ygfDGIDIDw 255 (484)
..+++.|+=+.+.+..+++++|+||+=+|.
T Consensus 156 ftnp~a~~Ww~~~~~~~~~~~Gidg~w~D~ 185 (340)
T cd06597 156 FTNPEAAQWWMEKRRYLVDELGIDGFKTDG 185 (340)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 356788888888888888899999999997
No 165
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.58 E-value=1.6e+02 Score=29.32 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=36.1
Q ss_pred CcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHh--CCCeeEEeecCCCCh-------hhHHHHHHHHHHHH
Q 011487 205 HIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKY--GFDGVDLDWEFPAND-------QDMSNLALLFKQWR 275 (484)
Q Consensus 205 ~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~y--gfDGIDIDwE~p~~~-------~~~~~~~~flk~Lr 275 (484)
+..++++|.|.+ . +.++ .+++.+++. ++|+|||++--|... .+.+.+.++++++|
T Consensus 90 ~~pl~~qi~g~~--~-------------~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 90 PTPLIASVYGSS--V-------------EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred CCcEEEEeecCC--H-------------HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 567999998743 1 2232 344445554 399999998766421 24456667777777
Q ss_pred HHh
Q 011487 276 TSI 278 (484)
Q Consensus 276 ~~l 278 (484)
++.
T Consensus 154 ~~~ 156 (300)
T TIGR01037 154 DKT 156 (300)
T ss_pred Hhc
Confidence 654
No 166
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=39.45 E-value=1.9e+02 Score=29.54 Aligned_cols=66 Identities=20% Similarity=0.391 Sum_probs=38.9
Q ss_pred HHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeec----CCCChhhHHHHHHHH
Q 011487 196 VGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWE----FPANDQDMSNLALLF 271 (484)
Q Consensus 196 i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE----~p~~~~~~~~~~~fl 271 (484)
++++|+..|+.||+|-+.+... ....+.| .+.++++| +|+|+- ||.-.....++..-+
T Consensus 160 ~~AVr~~~p~~kV~lH~~~~~~-----------~~~~~~~----f~~l~~~g---~d~DviGlSyYP~w~~~l~~l~~~l 221 (332)
T PF07745_consen 160 IKAVREVDPNIKVMLHLANGGD-----------NDLYRWF----FDNLKAAG---VDFDVIGLSYYPFWHGTLEDLKNNL 221 (332)
T ss_dssp HHHHHTHSSTSEEEEEES-TTS-----------HHHHHHH----HHHHHHTT---GG-SEEEEEE-STTST-HHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCc-----------hHHHHHH----HHHHHhcC---CCcceEEEecCCCCcchHHHHHHHH
Confidence 4788888899999999875432 2233334 44445544 555542 443333567777777
Q ss_pred HHHHHHhH
Q 011487 272 KQWRTSIN 279 (484)
Q Consensus 272 k~Lr~~l~ 279 (484)
+.|+++++
T Consensus 222 ~~l~~ry~ 229 (332)
T PF07745_consen 222 NDLASRYG 229 (332)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 78777774
No 167
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.42 E-value=4.1e+02 Score=27.13 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI 212 (484)
..++++.+.+|++ |.|+++-+
T Consensus 77 ~~lr~la~~vh~~--ga~~~~QL 97 (338)
T cd02933 77 EGWKKVTDAVHAK--GGKIFLQL 97 (338)
T ss_pred HHHHHHHHHHHhc--CCeEEEEc
Confidence 5677888888887 88888777
No 168
>PLN02411 12-oxophytodienoate reductase
Probab=39.37 E-value=1.3e+02 Score=31.48 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEE
Q 011487 190 AKLLELVGTLRVQNSHIKILLSI 212 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSI 212 (484)
..++++++++|++ |.|+++-|
T Consensus 87 ~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 87 EAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred HHHHHHHHHHHhc--CCEEEEec
Confidence 5677888888887 88988777
No 169
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=81 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 226 ASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 226 ~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
-++++..+++|.+-+..|-+.|+.|++|-+|. ++-++.+..+++.
T Consensus 144 ~k~~eik~kiIkNsinvlmtRGIrGlyiyaeD---pelrerl~~l~~~ 188 (191)
T COG3410 144 EKNQEIKEKIIKNSINVLMTRGIRGLYIYAED---PELRERLVELKRG 188 (191)
T ss_pred hhCHHHHHHHHHHHHHHHHhcccceEEEEEeC---HHHHHHHHHHHhh
Confidence 45677888999999999999999999999994 4445555555544
No 170
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=38.66 E-value=1.2e+02 Score=30.32 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=42.8
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCC-CCCchhhhhh----------------------------cCCHHH
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGG-GSDPNVFSKM----------------------------ASTKET 231 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~-~~~~~~f~~l----------------------------~~~~~~ 231 (484)
..++....-...+++++.+|++ |+|+++.+--. ..++..|.+. +.+++.
T Consensus 57 ~f~~d~~~FPd~~~~i~~l~~~--G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a 134 (308)
T cd06593 57 DFEFDPDRFPDPEGMLSRLKEK--GFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDA 134 (308)
T ss_pred eeEECcccCCCHHHHHHHHHHC--CCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHH
Confidence 3444432223457888999987 88888865311 0001111110 356677
Q ss_pred HHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 232 RAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 232 r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
|+-+.+.+. -+.++|+||+-+|+-
T Consensus 135 ~~w~~~~~~-~~~~~Gid~~~~D~~ 158 (308)
T cd06593 135 CKWYKDKLK-PLLDMGVDCFKTDFG 158 (308)
T ss_pred HHHHHHHHH-HHHHhCCcEEecCCC
Confidence 766655554 555689999999984
No 171
>PLN02784 alpha-amylase
Probab=38.57 E-value=1.2e+02 Score=34.95 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEE-----CCC-----------------CC-----Cchhh---------------hhh
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSI-----GGG-----------------GS-----DPNVF---------------SKM 225 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSI-----GG~-----------------~~-----~~~~f---------------~~l 225 (484)
+...++++++++|++ |++||+-+ +|+ .. +...| .++
T Consensus 566 T~~ELk~LI~a~H~~--GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDL 643 (894)
T PLN02784 566 TIDELKDLVKSFHEV--GIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 643 (894)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcC
Confidence 567899999999998 89999875 221 00 00001 111
Q ss_pred -cCCHHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 226 -ASTKETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 226 -~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
..++.-|+.+.+-+.-+++++||||.-||.-
T Consensus 644 Dh~npeVR~eL~~WlkWL~~e~G~DGfRLDaV 675 (894)
T PLN02784 644 DHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFV 675 (894)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 1345666666555554556899999999985
No 172
>PRK08005 epimerase; Validated
Probab=37.85 E-value=99 Score=29.42 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=40.8
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhcc
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKY 319 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~ 319 (484)
+..+.+.|.|-|-|.+|-. ....++++.+|+. +...-+++-+.... -.+..+.+.
T Consensus 74 i~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~-----------G~k~GlAlnP~Tp~--------~~i~~~l~~ 128 (210)
T PRK08005 74 LPWLAAIRPGWIFIHAESV------QNPSEILADIRAI-----------GAKAGLALNPATPL--------LPYRYLALQ 128 (210)
T ss_pred HHHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc-----------CCcEEEEECCCCCH--------HHHHHHHHh
Confidence 4455567999999999942 2234556666552 33445555432222 124667789
Q ss_pred CceEEeeecc
Q 011487 320 MNWVSPMCFD 329 (484)
Q Consensus 320 vD~v~lm~YD 329 (484)
+|+|.+|+-+
T Consensus 129 vD~VlvMsV~ 138 (210)
T PRK08005 129 LDALMIMTSE 138 (210)
T ss_pred cCEEEEEEec
Confidence 9999999976
No 173
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=37.82 E-value=1.7e+02 Score=27.10 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEE-CCCCCCchhhhh-hcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSI-GGGGSDPNVFSK-MASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSI-GG~~~~~~~f~~-l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
..+...|++.+|+++|++.|++-- -.... ..|.. .-.......+.++.+++-+++.|...|.+
T Consensus 77 ~~~~~~fv~~iR~~hP~tPIllv~~~~~~~--~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 77 RERLDGFVKTIREAHPDTPILLVSPIPYPA--GYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHTT-SSS-EEEEE----TT--TTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCccc--cccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 467788999999999999988533 22211 12221 11223344455666666676667655543
No 174
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=37.45 E-value=1.1e+02 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCeeEEeecCCC----------ChhhHHHHHHHHHHHHHHhHHh
Q 011487 233 AIFINSTIEIARKYGFDGVDLDWEFPA----------NDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 233 ~~fi~si~~~l~~ygfDGIDIDwE~p~----------~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
+..+.+-.+-|.+.|||||-||+-..- .......+..|+.++++..++.
T Consensus 125 kdii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 125 KDIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 455667777778889999999984221 1234566788888888877653
No 175
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=37.14 E-value=48 Score=31.96 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEE
Q 011487 236 INSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTA 294 (484)
Q Consensus 236 i~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsv 294 (484)
...+++.+++.|||||+|.+.+ ..-++++++.+.+ .++.++.
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~----------~~~~~~l~~~l~~-------~gl~v~~ 57 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY----------DWDAEALKARLAA-------AGLEQVL 57 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc----------cCCHHHHHHHHHH-------cCCeEEE
No 176
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=37.00 E-value=60 Score=31.61 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHh
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQE 281 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~ 281 (484)
.+++.|+.+++ ++++..++|+||+-||--.-.. . .|+++++++++..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~---~----~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP---K----EFWKEFRDEVKEE 188 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS---H----HHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccccc---h----hhHHHHhhhhhhh
Confidence 45677777777 6666667789999999743211 1 6677777777654
No 177
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.85 E-value=1.5e+02 Score=30.35 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=45.5
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEE------CCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSI------GGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD 254 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSI------GG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID 254 (484)
..++....-...+++++.||++ |+|+++.+ |..-.....|.+ ..+++.|+=+.+ ..+.+.+.|+||+=+|
T Consensus 55 ~Ft~d~~~FPdp~~mv~~L~~~--G~klv~~i~P~i~~g~~~~~~~~~pD-ftnp~ar~wW~~-~~~~l~~~Gv~~~W~D 130 (332)
T cd06601 55 TFTTNGGGFPNPKEMFDNLHNK--GLKCSTNITPVISYGGGLGSPGLYPD-LGRPDVREWWGN-QYKYLFDIGLEFVWQD 130 (332)
T ss_pred ceeecCCCCCCHHHHHHHHHHC--CCeEEEEecCceecCccCCCCceeeC-CCCHHHHHHHHH-HHHHHHhCCCceeecC
Confidence 4555443323346788999987 78887654 221111334544 457788886644 4556666899999999
Q ss_pred ecCC
Q 011487 255 WEFP 258 (484)
Q Consensus 255 wE~p 258 (484)
.-.|
T Consensus 131 mnEp 134 (332)
T cd06601 131 MTTP 134 (332)
T ss_pred CCCc
Confidence 7433
No 178
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.47 E-value=1.6e+02 Score=27.76 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhcc
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKY 319 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~ 319 (484)
+.-+.+-|.+.+-|.+|-. ++ ...+++.+|+ .+..+-+++-+... --++..+.+.
T Consensus 80 V~~~a~agas~~tfH~E~~---q~---~~~lv~~ir~-----------~Gmk~G~alkPgT~--------Ve~~~~~~~~ 134 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEAT---QK---PAELVEKIRE-----------KGMKVGLALKPGTP--------VEDLEPLAEH 134 (224)
T ss_pred HHHHHhcCcceEEEEEeec---cC---HHHHHHHHHH-----------cCCeeeEEeCCCCc--------HHHHHHhhcc
Confidence 4445566899999999953 22 4455666655 45677777755332 2345667789
Q ss_pred CceEEeeecc
Q 011487 320 MNWVSPMCFD 329 (484)
Q Consensus 320 vD~v~lm~YD 329 (484)
+|++.||+-.
T Consensus 135 ~D~vLvMtVe 144 (224)
T KOG3111|consen 135 VDMVLVMTVE 144 (224)
T ss_pred ccEEEEEEec
Confidence 9999999976
No 179
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=35.71 E-value=1.5e+02 Score=26.71 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhh--------hhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFS--------KMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~--------~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
...+..+++.+++++++.+|++.---... ...+. ......+..+.+.+.+.++.+++++.=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD-EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC-HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 35677888899988889998876322111 11111 112334556778888888889988765555
No 180
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=35.63 E-value=1.4e+02 Score=30.33 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=44.1
Q ss_pred EEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCC---C-----------------------------chhhhhhcCC
Q 011487 181 KLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGS---D-----------------------------PNVFSKMAST 228 (484)
Q Consensus 181 ~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~---~-----------------------------~~~f~~l~~~ 228 (484)
..++....-...+++++.||++ |+|+++.+--.-. . ...+-+ ..+
T Consensus 55 ~f~~d~~~fPdp~~m~~~l~~~--g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~D-ftn 131 (339)
T cd06604 55 VFTWDKERFPDPKELIKELHEQ--GFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPD-FTN 131 (339)
T ss_pred ceeeccccCCCHHHHHHHHHHC--CCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccC-CCC
Confidence 3444332223457888999998 8888866521100 0 011112 356
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 229 KETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 229 ~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
++.|+=|.+.+.++ .+.|+||+=+|.-.
T Consensus 132 p~a~~ww~~~~~~~-~~~Gvdg~w~D~~E 159 (339)
T cd06604 132 PKVREWWGSLYKKF-VDLGVDGIWNDMNE 159 (339)
T ss_pred hHHHHHHHHHHHHH-hhCCCceEeecCCC
Confidence 78888776666555 47999999999843
No 181
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.59 E-value=3e+02 Score=28.45 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=55.5
Q ss_pred eeeeeeCCCC--EEEEcCcC-hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC
Q 011487 171 AFLLPEPKTF--KLNVTLLD-HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG 247 (484)
Q Consensus 171 af~~i~~~gg--~l~~~~~~-~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg 247 (484)
.-+.++|.+. ........ +..++.+++.+|++ ++-+=+.+...+-......+.-..++....-+-.-++++++.|
T Consensus 96 ~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~--~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~ 173 (359)
T PF04551_consen 96 DKIRINPGNIVDEFQEELGSIREKVKEVVEAAKER--GIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELG 173 (359)
T ss_dssp SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHH--T-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CeEEECCCcccccccccccchHHHHHHHHHHHHHC--CCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCC
Confidence 3456666542 11222234 67889999999998 6766677655443233333332222233333334466778899
Q ss_pred CCeeEEeecCCCChhhHHHHHHHHHHHHHHhH
Q 011487 248 FDGVDLDWEFPANDQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 248 fDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~ 279 (484)
||-|-|-... .+.....+.-+.|.++++
T Consensus 174 f~~iviSlKs----Sdv~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 174 FDDIVISLKS----SDVPETIEAYRLLAERMD 201 (359)
T ss_dssp -GGEEEEEEB----SSHHHHHHHHHHHHHH--
T ss_pred CCcEEEEEEe----CChHHHHHHHHHHHHhcC
Confidence 9999999874 345555556666666654
No 182
>PRK01060 endonuclease IV; Provisional
Probab=35.31 E-value=52 Score=32.20 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHH
Q 011487 236 INSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 236 i~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~ 280 (484)
+...++.+++.|||||+|..+.|..-.....-...++++|+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~ 58 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEK 58 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999877553211111122336666666654
No 183
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=35.18 E-value=2.6e+02 Score=25.43 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNL 267 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~ 267 (484)
.+..+...++.+|+. |+++ |.. .|.. ..+.+..++-++..++.++. .-.-+-||+|.....+.....
T Consensus 37 ~D~~f~~n~~~a~~a--Gl~v----G~Y-----hf~~-~~~~~~a~~eA~~f~~~~~~-~~~~~~lD~E~~~~~~~~~~~ 103 (177)
T cd06523 37 VDLKYKNNIKEFKKR--GIPF----GVY-----AFAR-GTSTADAKAEARDFYNRANK-KPTFYVLDVEVTSMSDMNAGV 103 (177)
T ss_pred cCHHHHHHHHHHHHc--CCCe----EEE-----EEec-cCCHHHHHHHHHHHHHHhcC-CCceEEEeeccCCcchHHHHH
Confidence 346677777777776 5543 211 1111 11222233333334444444 233478999976432223334
Q ss_pred HHHHHHHHH
Q 011487 268 ALLFKQWRT 276 (484)
Q Consensus 268 ~~flk~Lr~ 276 (484)
.+|+.++++
T Consensus 104 ~~f~~~v~~ 112 (177)
T cd06523 104 QAFISELRR 112 (177)
T ss_pred HHHHHHHHH
Confidence 445555443
No 184
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.34 E-value=74 Score=32.06 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=36.8
Q ss_pred HHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----------hhhHHH
Q 011487 198 TLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----------DQDMSN 266 (484)
Q Consensus 198 ~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----------~~~~~~ 266 (484)
.+.......++++-|+|.+ + +. ....++++.++|+|||||+.-=|.. -.+.+.
T Consensus 46 ~~~~~~~~~p~~~Ql~g~~------------~---~~-~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~ 109 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGND------------P---ED-LAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDL 109 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S-------------H---HH-HHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHH
T ss_pred cccccccccceeEEEeecc------------H---HH-HHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHH
Confidence 3444444568889998853 1 22 2233556677999999999976531 235677
Q ss_pred HHHHHHHHHHHhH
Q 011487 267 LALLFKQWRTSIN 279 (484)
Q Consensus 267 ~~~flk~Lr~~l~ 279 (484)
..++|+++++.++
T Consensus 110 ~~~iv~~~~~~~~ 122 (309)
T PF01207_consen 110 LAEIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHHHH-S
T ss_pred hhHHHHhhhcccc
Confidence 8888888888763
No 185
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.20 E-value=64 Score=31.58 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHH
Q 011487 237 NSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 237 ~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~ 280 (484)
...++++++.|||||+|+...+........-..-++++++.+.+
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEE 56 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999875432111000011345566666554
No 186
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.56 E-value=62 Score=31.72 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCChhhH-HHHHHHHHHHHHHhHH
Q 011487 237 NSTIEIARKYGFDGVDLDWEFPANDQDM-SNLALLFKQWRTSINQ 280 (484)
Q Consensus 237 ~si~~~l~~ygfDGIDIDwE~p~~~~~~-~~~~~flk~Lr~~l~~ 280 (484)
..+++.++++|||||+|.........+. .....-++++++.+.+
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 63 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIE 63 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHH
Confidence 3457889999999999976542110011 0113446777777765
No 187
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=33.19 E-value=2.1e+02 Score=25.32 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhCCCcEEEE-EECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEee
Q 011487 189 HAKLLELVGTLRVQNSHIKILL-SIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDW 255 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~Kvll-SIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDw 255 (484)
...+.++++.+++++|+.+|++ ++-=... ... ......+.++++.+.+.++.+++++.=||+.-
T Consensus 74 ~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~-~~~--~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~ 138 (174)
T cd01841 74 IKWYRDIIEQIREEFPNTKIYLLSVLPVLE-EDE--IKTRSNTRIQRLNDAIKELAPELGVTFIDLND 138 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeCCcCc-ccc--cccCCHHHHHHHHHHHHHHHHHCCCEEEEcHH
Confidence 4677888899999888998874 4321111 000 01123467788888899999998876666553
No 188
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=32.96 E-value=3.5e+02 Score=26.01 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhCCCcEEE--EEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKIL--LSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNL 267 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~Kvl--lSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~ 267 (484)
..+.+.++.+|+++..+.+| +|=||-- ...+.+..++++++++|+.-|-|..=.-+.+......
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVH--------------Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~ 79 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVH--------------SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSA 79 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS----------------HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCcc--------------ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchH
Confidence 45677778888776555555 4445532 2356677799999999988777766433334444555
Q ss_pred HHHHHHHHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 268 ALLFKQWRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 268 ~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
..+|++|.+.+.+.+ .+.+-|+.-..
T Consensus 80 ~~yl~~l~~~l~~~~-----~g~IAsv~GRy 105 (223)
T PF06415_consen 80 LKYLEELEEKLAEIG-----IGRIASVSGRY 105 (223)
T ss_dssp HHHHHHHHHHHHHHT-----CTEEEEEEECC
T ss_pred HHHHHHHHHHHHhhC-----CceEEEEecee
Confidence 677888888887643 34566666443
No 189
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=32.78 E-value=1.4e+02 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC---ChhhHHHHHHHHHHHHHHhHH
Q 011487 225 MASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA---NDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 225 l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~---~~~~~~~~~~flk~Lr~~l~~ 280 (484)
++.+++..+.....+.++|.+|||+|.|.-.-.-. .-+......+-|.+|-+++++
T Consensus 140 mvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 140 MVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred ccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 46778888888899999999999999887664321 112233366677777777764
No 190
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=32.69 E-value=2.4e+02 Score=27.18 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCch-hh--------hhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPN-VF--------SKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~-~f--------~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
.++++++++-+|...|..+||+--=+--+ .+ .+ ....+..+.-..+++.++++.++-|+++||+
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~d-e~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPVD-EEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCcC-HHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 36777777777777677777753322211 11 11 1112456677789999999999999999999
No 191
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=32.55 E-value=1.6e+02 Score=33.42 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCccccCCCCCCCcccccCCCCCCCCCC
Q 011487 51 DHPWPAPVPPSPSYIAGPGMDPYTEVTPYPVVPASDPH 88 (484)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (484)
-.|++||..|++++--|=.++-+-+-.-.+-||.++|+
T Consensus 689 ~rpi~ap~~PA~~p~pg~di~kP~~p~~v~ipp~~~p~ 726 (1039)
T KOG0199|consen 689 QRPISAPSIPALQPQPGQDIQKPIQPQQVRIPPSTAPV 726 (1039)
T ss_pred cCcCCCCCCCcCCCCCCCCCCCCCCCcccCCCCccccc
Confidence 46899999999999877777777766666667665553
No 192
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=32.53 E-value=2e+02 Score=28.86 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCc
Q 011487 232 RAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGY 311 (484)
Q Consensus 232 r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~ 311 (484)
.+-|-.++.++++....--|-|=+-...+.++.....+++++.+++|.+++.... .++.+-+-+.... ..+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~-~~~~vG~MiEvPs--------aal 189 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFD-PDLPVGIMIEVPS--------AAL 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTG-TT-EEEEEE-SHH--------HHH
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCcc-ccceEEEEechhH--------HHH
Confidence 4557777777776544334444444444567777888888888888887643221 2334444333222 235
Q ss_pred ChhhhhccCceEEeeeccC
Q 011487 312 PIEAINKYMNWVSPMCFDY 330 (484)
Q Consensus 312 d~~~l~~~vD~v~lm~YD~ 330 (484)
...++.+.+||+.|=+-|+
T Consensus 190 ~~~~~~~~~DF~SIGtNDL 208 (293)
T PF02896_consen 190 MADEFAKEVDFFSIGTNDL 208 (293)
T ss_dssp THHHHHTTSSEEEEEHHHH
T ss_pred HHHHHHHHCCEEEEChhHH
Confidence 5789999999999998886
No 193
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=32.08 E-value=69 Score=31.66 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHH
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRT 276 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~ 276 (484)
+++++..-|||.|-||.||- .-+.+.+..+++.++.
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg--~~~~~~l~~~i~a~~~ 66 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHA--PNTIQDLYHQLQAIAP 66 (267)
T ss_pred HHHHHHHcCCCEEEEccccC--CCCHHHHHHHHHHHHh
Confidence 56777788999999999994 5556666666666553
No 194
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=32.04 E-value=1.5e+02 Score=28.52 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=41.2
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCe--EEEEEecccccccccCCCCCcChhhhh
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPL--LLTAAVYFASRFTIYGGPRGYPIEAIN 317 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~--~Lsvav~~~~~~~~~~~~~~~d~~~l~ 317 (484)
++.+.+.|.|-|-|.+|-. ....++|+.+|+. +. ...+++-+.... -.+..+.
T Consensus 84 i~~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~-----------g~~~kaGlalnP~Tp~--------~~i~~~l 138 (228)
T PRK08091 84 AKACVAAGADIVTLQVEQT------HDLALTIEWLAKQ-----------KTTVLIGLCLCPETPI--------SLLEPYL 138 (228)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC-----------CCCceEEEEECCCCCH--------HHHHHHH
Confidence 4445567999999999942 2244556666552 22 445555432222 2356777
Q ss_pred ccCceEEeeecc
Q 011487 318 KYMNWVSPMCFD 329 (484)
Q Consensus 318 ~~vD~v~lm~YD 329 (484)
+.+|+|.+|+-+
T Consensus 139 ~~vD~VLiMtV~ 150 (228)
T PRK08091 139 DQIDLIQILTLD 150 (228)
T ss_pred hhcCEEEEEEEC
Confidence 899999999976
No 195
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=32.04 E-value=66 Score=31.54 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHH
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRT 276 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~ 276 (484)
+++++..-|||.|-||.||- ..+.+.+..+++.++.
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg--~~~~~~~~~~i~a~~~ 67 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHA--PNDVSTFIPQLMALKG 67 (256)
T ss_pred HHHHHHhcCCCEEEEccccC--CCCHHHHHHHHHHHhh
Confidence 57777889999999999994 4556666666665544
No 196
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.41 E-value=52 Score=32.09 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLA 268 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~ 268 (484)
...+++.++.+|++ .|.++.||+-+ .. ...+.-++..++.+++.|||.|+|.--.. +-..+...
T Consensus 53 ~~~l~eki~l~~~~----gV~v~~GGtl~-----E~-----a~~q~~~~~yl~~~k~lGf~~IEiSdGti--~l~~~~r~ 116 (244)
T PF02679_consen 53 EEILKEKIDLAHSH----GVYVYPGGTLF-----EV-----AYQQGKFDEYLEECKELGFDAIEISDGTI--DLPEEERL 116 (244)
T ss_dssp CHHHHHHHHHHHCT----T-EEEE-HHHH-----HH-----HHHTT-HHHHHHHHHHCT-SEEEE--SSS-----HHHHH
T ss_pred HHHHHHHHHHHHHc----CCeEeCCcHHH-----HH-----HHhcChHHHHHHHHHHcCCCEEEecCCce--eCCHHHHH
Confidence 35677777777765 45677888632 11 22355567889999999999999985432 22244444
Q ss_pred HHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcC-----hhhhhccCceEEeeeccCCCCCCCCCCCCCc
Q 011487 269 LLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYP-----IEAINKYMNWVSPMCFDYHGSWENFTGLHAA 343 (484)
Q Consensus 269 ~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d-----~~~l~~~vD~v~lm~YD~~g~w~~~~g~~sp 343 (484)
.+|+.+++. ++.+-.-+......... ...... -..|..-+|+|.+-+=. .|-. .
T Consensus 117 ~~I~~~~~~-----------Gf~v~~EvG~K~~~~~~-~~~~~~~i~~~~~dLeAGA~~ViiEarE--------sG~~-G 175 (244)
T PF02679_consen 117 RLIRKAKEE-----------GFKVLSEVGKKDPESDF-SLDPEELIEQAKRDLEAGADKVIIEARE--------SGKG-G 175 (244)
T ss_dssp HHHHHHCCT-----------TSEEEEEES-SSHHHHT-T--CCHHHHHHHHHHHHTECEEEE--TT--------T--S-T
T ss_pred HHHHHHHHC-----------CCEEeecccCCCchhcc-cCCHHHHHHHHHHHHHCCCCEEEEeeec--------cCCC-C
Confidence 555555442 33333333221111000 000111 14455668888886632 2222 4
Q ss_pred cCCCCCCccHHHHHHHHHHcCCCCCCEeecCc
Q 011487 344 LNDPRSNISTSYGIGSWIQAGVPAQKLVMGLP 375 (484)
Q Consensus 344 l~~~~~~~~~~~~v~~~~~~Gvp~~KlvLGlp 375 (484)
+|+.... .-...+..+++. ++.+||+.--|
T Consensus 176 i~~~~g~-~r~d~v~~i~~~-~~~~~lifEAp 205 (244)
T PF02679_consen 176 IYDNDGE-VRTDLVEKIIER-LGLEKLIFEAP 205 (244)
T ss_dssp TB-TTS--B-HHHHHHHHTT-S-GGGEEEE--
T ss_pred ccCCCCC-ccHHHHHHHHHh-CCHhHEEEeCC
Confidence 4433321 234456665655 88999985544
No 197
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.22 E-value=2.4e+02 Score=25.66 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=33.0
Q ss_pred HHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhh-cc
Q 011487 241 EIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAIN-KY 319 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~-~~ 319 (484)
++..++|+|||+|..+... ..+.|..+. ++.+++++++... +..++. .-
T Consensus 66 ~la~~~~~dGvHl~~~~~~-----------~~~~r~~~~--------~~~~ig~S~h~~~-----------e~~~a~~~g 115 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDLP-----------PAEARKLLG--------PDKIIGASCHSLE-----------EAREAEELG 115 (180)
T ss_dssp HHHHHCT-SEEEEBTTSSS-----------HHHHHHHHT--------TTSEEEEEESSHH-----------HHHHHHHCT
T ss_pred HHHHhcCCCEEEecccccc-----------hHHhhhhcc--------cceEEEeecCcHH-----------HHHHhhhcC
Confidence 3344567999999876431 344455554 4568887765321 233333 56
Q ss_pred CceEEeee
Q 011487 320 MNWVSPMC 327 (484)
Q Consensus 320 vD~v~lm~ 327 (484)
+||+.+-.
T Consensus 116 ~dYv~~gp 123 (180)
T PF02581_consen 116 ADYVFLGP 123 (180)
T ss_dssp TSEEEEET
T ss_pred CCEEEECC
Confidence 89997755
No 198
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.02 E-value=2.6e+02 Score=24.60 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD 254 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID 254 (484)
...+.++++.+++++++.+|++.-- ... . ..........+++-+.+.++.+++|+.=||+.
T Consensus 71 ~~~l~~li~~~~~~~~~~~vi~~~~-~p~-~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 131 (169)
T cd01828 71 VANYRTILEKLRKHFPNIKIVVQSI-LPV-G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDLW 131 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEec-CCc-C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEech
Confidence 3667888899999888999887421 000 0 01123345667788888888888887666653
No 199
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=30.46 E-value=4.3e+02 Score=26.21 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=7.3
Q ss_pred ccEEEEeeeeee
Q 011487 165 FTHIYYAFLLPE 176 (484)
Q Consensus 165 ~ThIi~af~~i~ 176 (484)
-+|+.|.-+.+.
T Consensus 132 a~~L~yG~alls 143 (297)
T PF07174_consen 132 ASHLDYGSALLS 143 (297)
T ss_pred cceeecceeeec
Confidence 566777665554
No 200
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=30.33 E-value=81 Score=34.59 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcC
Q 011487 237 NSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITN 286 (484)
Q Consensus 237 ~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~ 286 (484)
+|+++++.+.|+|=.-|||.+|......-.+...++.+.++++.....+|
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG 286 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITG 286 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999985332222333444455555555444444
No 201
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=29.99 E-value=3.3e+02 Score=29.30 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 011487 194 ELVGTLR 200 (484)
Q Consensus 194 ~~i~~lk 200 (484)
++++.+|
T Consensus 497 ~LmaqIR 503 (569)
T KOG3671|consen 497 ALMAQIR 503 (569)
T ss_pred HHHHHHH
Confidence 4445555
No 202
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.49 E-value=2.4e+02 Score=31.18 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEE
Q 011487 190 AKLLELVGTLRVQNSHIKILL 210 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~Kvll 210 (484)
..|.++++.++.+++.+..++
T Consensus 469 ~~w~~~~~~~~~~~~~~~~~~ 489 (585)
T PRK14950 469 AIWKQILRDVPPRSPAVQALL 489 (585)
T ss_pred HHHHHHHHHHhhcCHHHHHHH
Confidence 445556666665554444444
No 203
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=29.26 E-value=67 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=37.5
Q ss_pred EEEEEECCCCCCchhhhhhcC-----------CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHH
Q 011487 207 KILLSIGGGGSDPNVFSKMAS-----------TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274 (484)
Q Consensus 207 KvllSIGG~~~~~~~f~~l~~-----------~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~L 274 (484)
++++.|||.-. ...|.+++. +-....-=-+-|.+.+++.+.+-+-|||... ...++..+.++++++
T Consensus 131 ~~~ig~GG~HY-apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l-~~~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY-APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSL-KSEDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT--HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS--HHHHHHHHHHHHHH
T ss_pred ceeEEecCccc-chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCC-CHHHHHHHHHHHHHc
Confidence 99999999765 444444322 1100110134455666677899999999976 456677777666664
No 204
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=29.24 E-value=1.9e+02 Score=29.58 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. -+|||=++.+......+ +-....+. +...++.+++.||+-|.+|+=+-...++.+.+.+-++.
T Consensus 99 e~l~~l~~~--Gvn-RiSiGvQS~~~~~L~~l-gR~~~~~~-~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 99 AWLKGMKNL--GVN-RISFGVQSFNEDKLKFL-GRIHSQKQ-IIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHc--CCC-EEEEecccCCHHHHHHc-CCCCCHHH-HHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 444566655 444 56777777644433333 22222333 44567788899999888888652222334444444444
Q ss_pred H
Q 011487 274 W 274 (484)
Q Consensus 274 L 274 (484)
+
T Consensus 174 ~ 174 (350)
T PRK08446 174 A 174 (350)
T ss_pred H
Confidence 3
No 205
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=29.08 E-value=1.7e+02 Score=32.68 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=23.4
Q ss_pred CCCCCccccCCCCCCCcccccCCCC---CCCCCCCCCCCCCC
Q 011487 58 VPPSPSYIAGPGMDPYTEVTPYPVV---PASDPHTAVPTSPV 96 (484)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~ 96 (484)
.||-|-+=.||-|..+-|--.+|+- +++.+++.++..|+
T Consensus 192 pPplPavglgp~~~~~~s~Ppip~p~~~~t~~~~ppV~n~Pp 233 (944)
T KOG4307|consen 192 PPPLPAVGLGPQINRYGSGPPIPKPADLSTTRSLPPVNNPPP 233 (944)
T ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3456677778888888877777665 33333344444333
No 206
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=28.17 E-value=2.7e+02 Score=26.89 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC-----------h
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN-----------D 261 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~-----------~ 261 (484)
.+.+.+++ .+.+++++|++.+ .+ .++ .+++.+.+ ++|+|||+.--|.. -
T Consensus 58 ~~e~~~~~---~~~~vivnv~~~~--~e-------------e~~-~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll 117 (231)
T TIGR00736 58 IEQIKKAE---SRALVSVNVRFVD--LE-------------EAY-DVLLTIAE-HADIIEINAHCRQPEITEIGIGQELL 117 (231)
T ss_pred HHHHHHHh---hcCCEEEEEecCC--HH-------------HHH-HHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhc
Confidence 33444554 2569999999854 12 121 23444444 69999999987642 1
Q ss_pred hhHHHHHHHHHHHH
Q 011487 262 QDMSNLALLFKQWR 275 (484)
Q Consensus 262 ~~~~~~~~flk~Lr 275 (484)
.+.+.+.++++.++
T Consensus 118 ~dp~~l~~iv~av~ 131 (231)
T TIGR00736 118 KNKELLKEFLTKMK 131 (231)
T ss_pred CCHHHHHHHHHHHH
Confidence 25566667777776
No 207
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=28.16 E-value=4e+02 Score=23.54 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG 247 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg 247 (484)
...+.++++.+|+++|..+|++... .-. .. ......+++.+.+++++++
T Consensus 80 ~~~~~~li~~i~~~~p~~~i~~~~~-~~~-~~--------~~~~~~~~~~~~~~~~~~~ 128 (169)
T cd01831 80 TNAYVEFIEELRKRYPDAPIVLMLG-PML-FG--------PYGTEEEIKRVAEAFKDQK 128 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEec-Ccc-cc--------ccccHHHHHHHHHHHHhcC
Confidence 3577888999999999999877532 211 11 0011566777777788775
No 208
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=28.10 E-value=5.3e+02 Score=29.89 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=7.2
Q ss_pred EEEEecCCCCCCC
Q 011487 145 KAAYWPSFNDFPA 157 (484)
Q Consensus 145 ~~gY~~~~~~~~~ 157 (484)
++..|..+..+++
T Consensus 838 ~m~l~lP~~~~p~ 850 (1114)
T KOG3753|consen 838 NMALWLPFYGFPP 850 (1114)
T ss_pred eeeeecCccCCCC
Confidence 3567765544444
No 209
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=27.98 E-value=89 Score=30.50 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHH
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRT 276 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~ 276 (484)
+++++..-|||.|-||.||- .-+.+.+..+++.++.
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg--~~~~~~~~~~~~a~~~ 60 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHA--PNDVLTFIPQLMALKG 60 (249)
T ss_pred HHHHHHhcCCCEEEEecccC--CCCHHHHHHHHHHHhh
Confidence 56777788999999999994 4455666666665443
No 210
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=27.88 E-value=4.2e+02 Score=24.52 Aligned_cols=17 Identities=0% Similarity=-0.099 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhhCCCcE
Q 011487 189 HAKLLELVGTLRVQNSHIK 207 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~K 207 (484)
+..+..-++.+|+. |++
T Consensus 38 D~~~~~n~~~A~~a--Gl~ 54 (199)
T cd06412 38 NPRFSSQYNGAYNA--GLI 54 (199)
T ss_pred ChhHHHHHHHHHHc--CCc
Confidence 45566666777765 553
No 211
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=27.71 E-value=1.5e+02 Score=33.36 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=8.9
Q ss_pred CCCCCCCcccccCCCC
Q 011487 67 GPGMDPYTEVTPYPVV 82 (484)
Q Consensus 67 ~~~~~~~~~~~~~~~~ 82 (484)
|=-++++.+++++|+.
T Consensus 560 gl~~~~~~~~~~~~~~ 575 (670)
T PLN02217 560 GLFAGNPGSTNSTPTG 575 (670)
T ss_pred ccccCCCCccccCCCC
Confidence 3345566666666655
No 212
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.67 E-value=1.7e+02 Score=28.00 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=40.4
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhcc
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKY 319 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~ 319 (484)
+..+.+.|.|=|-|..|.. ....++|+.+|+. +....+++-+.... -.+..+.+.
T Consensus 78 i~~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~-----------g~k~GlalnP~T~~--------~~i~~~l~~ 132 (223)
T PRK08745 78 VPDFADAGATTISFHPEAS------RHVHRTIQLIKSH-----------GCQAGLVLNPATPV--------DILDWVLPE 132 (223)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC-----------CCceeEEeCCCCCH--------HHHHHHHhh
Confidence 3444456999999999942 2344566666653 23344454332221 235677789
Q ss_pred CceEEeeecc
Q 011487 320 MNWVSPMCFD 329 (484)
Q Consensus 320 vD~v~lm~YD 329 (484)
+|+|.+|+-+
T Consensus 133 vD~VlvMtV~ 142 (223)
T PRK08745 133 LDLVLVMSVN 142 (223)
T ss_pred cCEEEEEEEC
Confidence 9999999976
No 213
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=27.58 E-value=1.1e+02 Score=27.07 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeeEEe-ecCCCChhhHHHHHHHHHHHHHHhH
Q 011487 226 ASTKETRAIFINSTIEIARKYGFDGVDLD-WEFPANDQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 226 ~~~~~~r~~fi~si~~~l~~ygfDGIDID-wE~p~~~~~~~~~~~flk~Lr~~l~ 279 (484)
.-+|.+-..+.+.+++++++.+-.-|-|| .||..-..+-+...+||..||+..-
T Consensus 54 ~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~ 108 (136)
T PF05763_consen 54 AISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYAL 108 (136)
T ss_pred ccCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHee
Confidence 34677888899999999999665578888 5887656667888899999998663
No 214
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=27.33 E-value=1.2e+02 Score=24.56 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=42.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCC---------hhhHHHHHHHHHHHHHHhH
Q 011487 223 SKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN---------DQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 223 ~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~---------~~~~~~~~~flk~Lr~~l~ 279 (484)
..+.......++....+.+.++++|++=--+|.|+..+ .+++-+|..|+++|...|+
T Consensus 15 ~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 15 ERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 33334444556667777888889998877778887642 4678899999999999885
No 215
>PLN02433 uroporphyrinogen decarboxylase
Probab=27.25 E-value=1.7e+02 Score=29.91 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 192 LLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 192 ~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
.+++++.+++++++..+++=+.|+. .+.+.+.++|.|++.+||..
T Consensus 219 ~k~i~~~i~~~~~~~~~ilh~cG~~---------------------~~~~~~~~~~~~~i~~d~~~ 263 (345)
T PLN02433 219 LEKIVDEVKARHPDVPLILYANGSG---------------------GLLERLAGTGVDVIGLDWTV 263 (345)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCH---------------------HHHHHHHhcCCCEEEcCCCC
Confidence 3556677777655667777666642 24667778999999999984
No 216
>PLN02334 ribulose-phosphate 3-epimerase
Probab=27.12 E-value=2.6e+02 Score=26.55 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhc
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINK 318 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~ 318 (484)
.++.+.+.|.|||-+..|. . . .+.....+++++. .++.+-+++.+.... -..+.+.+
T Consensus 80 ~~~~~~~~gad~v~vH~~q-~-~--~d~~~~~~~~i~~-----------~g~~iGls~~~~t~~--------~~~~~~~~ 136 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQ-A-S--TIHLHRLIQQIKS-----------AGMKAGVVLNPGTPV--------EAVEPVVE 136 (229)
T ss_pred HHHHHHHcCCCEEEEeecc-c-c--chhHHHHHHHHHH-----------CCCeEEEEECCCCCH--------HHHHHHHh
Confidence 4566677899999888873 0 0 1233344555443 344566665321111 12455666
Q ss_pred c--CceEEeeecc
Q 011487 319 Y--MNWVSPMCFD 329 (484)
Q Consensus 319 ~--vD~v~lm~YD 329 (484)
. +|||.+|+..
T Consensus 137 ~~~~Dyi~~~~v~ 149 (229)
T PLN02334 137 KGLVDMVLVMSVE 149 (229)
T ss_pred ccCCCEEEEEEEe
Confidence 7 9999999875
No 217
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.92 E-value=3.2e+02 Score=26.65 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=63.9
Q ss_pred eCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEE-EEECCCCCCchhhhhhcCCHHHHHH---HHHHHHHHHHHhC----
Q 011487 176 EPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKIL-LSIGGGGSDPNVFSKMASTKETRAI---FINSTIEIARKYG---- 247 (484)
Q Consensus 176 ~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~Kvl-lSIGG~~~~~~~f~~l~~~~~~r~~---fi~si~~~l~~yg---- 247 (484)
|....++..-++++....++++++.+. |+.+= +.+-+ ...|.---+|++.|++ .....+.+.++.|
T Consensus 40 DEsDeRLaRLDWs~~er~~l~~ai~et--gv~ipSmClSa----HRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtI 113 (287)
T COG3623 40 DESDERLARLDWSKEERLALVNAIQET--GVRIPSMCLSA----HRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTI 113 (287)
T ss_pred cchHHHHHhcCCCHHHHHHHHHHHHHh--CCCccchhhhh----hccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeE
Confidence 333335555667777777788877776 55432 22222 1222222456666654 4566777888887
Q ss_pred -CCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecc
Q 011487 248 -FDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYF 298 (484)
Q Consensus 248 -fDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~ 298 (484)
+-|-|+-||.. +.+.-..|++.|+.+..-+. ...+++|+..
T Consensus 114 QLAGYDVYYE~~----d~eT~~rFi~g~~~a~~lA~------~aqV~lAvEi 155 (287)
T COG3623 114 QLAGYDVYYEEA----DEETRQRFIEGLKWAVELAA------RAQVMLAVEI 155 (287)
T ss_pred eeccceeeeccC----CHHHHHHHHHHHHHHHHHHH------hhccEEEeee
Confidence 67889999853 34555667777777665442 3456667654
No 218
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.85 E-value=2e+02 Score=27.68 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccC
Q 011487 241 EIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYM 320 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~v 320 (484)
+.+.+.|.|=|-|.+|-. . ....++|+.+|+. +....+++-+.... -.+..+.+.+
T Consensus 76 ~~~~~aGad~it~H~Ea~--~---~~~~~~i~~Ik~~-----------G~kaGlalnP~T~~--------~~l~~~l~~v 131 (229)
T PRK09722 76 DQLADAGADFITLHPETI--N---GQAFRLIDEIRRA-----------GMKVGLVLNPETPV--------ESIKYYIHLL 131 (229)
T ss_pred HHHHHcCCCEEEECccCC--c---chHHHHHHHHHHc-----------CCCEEEEeCCCCCH--------HHHHHHHHhc
Confidence 344455999999999942 1 1234555555552 23345555432222 2356777899
Q ss_pred ceEEeeecc
Q 011487 321 NWVSPMCFD 329 (484)
Q Consensus 321 D~v~lm~YD 329 (484)
|+|.+|+-+
T Consensus 132 D~VLvMsV~ 140 (229)
T PRK09722 132 DKITVMTVD 140 (229)
T ss_pred CEEEEEEEc
Confidence 999999976
No 219
>PRK06756 flavodoxin; Provisional
Probab=26.81 E-value=4.2e+02 Score=22.97 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCC----CeeEEeecCCCChhhHHHHHHHHHHHHHHh
Q 011487 233 AIFINSTIEIARKYGF----DGVDLDWEFPANDQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 233 ~~fi~si~~~l~~ygf----DGIDIDwE~p~~~~~~~~~~~flk~Lr~~l 278 (484)
...++.+.+.+++.|+ +|+.+.+.. ++++.+....|.++|.++|
T Consensus 100 ~~a~~~l~~~l~~~g~~~v~~~~~~~~~p--~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 100 GVAVDILIEKLQERGAAVVLEGLKVELTP--EDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred HHHHHHHHHHHHHCCCEEcCCCeEEecCC--CHHHHHHHHHHHHHHHHhc
Confidence 3446777888888884 567776643 5777888888888886654
No 220
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.76 E-value=1.8e+02 Score=30.40 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=32.4
Q ss_pred CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC--CCChhhHHHHHHHHHHHHHHhHH
Q 011487 214 GGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF--PANDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 214 G~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~--p~~~~~~~~~~~flk~Lr~~l~~ 280 (484)
||.+ .+.|....+... .+. ..++.+.+.|||||.|.... |.... ......-++++++.+.+
T Consensus 17 ~~~~-~~~~g~~~~~~~---~~~-e~i~~la~~GfdgVE~~~~dl~P~~~~-~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 17 GWVG-RDPFGDATRTAL---DPV-EAVHKLAELGAYGVTFHDDDLIPFGAP-PQERDQIVRRFKKALDE 79 (382)
T ss_pred CCCC-CCCCCCCCCCCc---CHH-HHHHHHHHhCCCEEEecccccCCCCCC-hhHHHHHHHHHHHHHHH
Confidence 4444 455555444322 112 34556888999999997431 21111 11112346778888876
No 221
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=26.74 E-value=4.2e+02 Score=30.33 Aligned_cols=161 Identities=9% Similarity=0.060 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEE---EEECCCCCCchhhh-----hhcCC------HHHHHHHHHHHHHHHHHhC-CCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKIL---LSIGGGGSDPNVFS-----KMAST------KETRAIFINSTIEIARKYG-FDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~Kvl---lSIGG~~~~~~~f~-----~l~~~------~~~r~~fi~si~~~l~~yg-fDGIDI 253 (484)
+.++..+.+.+++. .+..|+ +-|||... ...+. .++.- -...+-|..++.++++.-. +.-+.|
T Consensus 477 ~eQ~~~y~~~~~~~-~~~pv~iRtlDiGgDK~-~~~~~~~E~NP~lG~RgiR~~l~~~~~f~~QlrAilra~~~~g~l~i 554 (748)
T PRK11061 477 EEQVAQYQGMLQMF-PDKPVTLRTLDIGADKQ-LPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSI 554 (748)
T ss_pred HHHHHHHHHHHHHc-CCCeEEEECCCCCcCCC-CCCCCCCCCCcccccchhhccccCHHHHHHHHHHHHHHHhhCCCeEE
Confidence 45566665555544 356666 45677531 11110 00111 1345678888999988653 555666
Q ss_pred eecCCCChhhHHHHHHHHHHHHHHhHHh-hhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEeeeccCCC
Q 011487 254 DWEFPANDQDMSNLALLFKQWRTSINQE-ARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPMCFDYHG 332 (484)
Q Consensus 254 DwE~p~~~~~~~~~~~flk~Lr~~l~~~-~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm~YD~~g 332 (484)
=+-...+.++.....+++++.+++|.++ +.... ++.+-+-+..+ ...+-...+.+.+|||.|=+-|+..
T Consensus 555 m~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~--~~~~G~MiE~P--------aa~~~~~~~a~~~DF~SIGtNDL~Q 624 (748)
T PRK11061 555 LLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIP--KPRIGIMIEVP--------SMVFMLPHLASRVDFISVGTNDLTQ 624 (748)
T ss_pred EhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC--CceEEEEEehH--------HHHHHHHHHHHhCCEEEECccHHHH
Confidence 5555545667777888888888888754 32221 12233333221 1234468899999999999988643
Q ss_pred C---CCCCCCCCCccCCCCCCccHHHHHHHHHH
Q 011487 333 S---WENFTGLHAALNDPRSNISTSYGIGSWIQ 362 (484)
Q Consensus 333 ~---w~~~~g~~spl~~~~~~~~~~~~v~~~~~ 362 (484)
- -+......+.+|++.. -.+...|++.++
T Consensus 625 y~la~DR~n~~v~~~~~~~~-Pavlr~i~~~~~ 656 (748)
T PRK11061 625 YLLAVDRNNTRVASLYDSLH-PAMLRALKMIAD 656 (748)
T ss_pred HHHHhcCCChHHHhhcCCCC-HHHHHHHHHHHH
Confidence 1 1122233455555443 234444555443
No 222
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.56 E-value=1.9e+02 Score=27.59 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=40.8
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhcc
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKY 319 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~ 319 (484)
++.+.+.|.|=|-+..|.. ....++++.+|+. +....+++-+.... -.+..+.+.
T Consensus 74 i~~~~~~gad~i~~H~Ea~------~~~~~~l~~ik~~-----------g~k~GlalnP~Tp~--------~~i~~~l~~ 128 (220)
T PRK08883 74 IPDFAKAGASMITFHVEAS------EHVDRTLQLIKEH-----------GCQAGVVLNPATPL--------HHLEYIMDK 128 (220)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHc-----------CCcEEEEeCCCCCH--------HHHHHHHHh
Confidence 3444557999999999942 2345566666652 23344554432222 235677889
Q ss_pred CceEEeeecc
Q 011487 320 MNWVSPMCFD 329 (484)
Q Consensus 320 vD~v~lm~YD 329 (484)
+|+|.+|+=+
T Consensus 129 ~D~vlvMtV~ 138 (220)
T PRK08883 129 VDLILLMSVN 138 (220)
T ss_pred CCeEEEEEec
Confidence 9999999976
No 223
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.45 E-value=2.5e+02 Score=29.88 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. .++||=++.+.+....+ +-....+. +...++.+++.||+.|.+|+-+-...+..+.+.+.++.
T Consensus 153 e~l~~L~~~--G~~-rvsiGvQS~~~~vl~~l-~R~~~~~~-~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~ 227 (453)
T PRK13347 153 EMLQALAAL--GFN-RASFGVQDFDPQVQKAI-NRIQPEEM-VARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHHc--CCC-EEEECCCCCCHHHHHHh-CCCCCHHH-HHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHH
Confidence 344445543 332 46666666543333222 22222233 44567788899999777777543234455555555555
Q ss_pred HH
Q 011487 274 WR 275 (484)
Q Consensus 274 Lr 275 (484)
+.
T Consensus 228 ~~ 229 (453)
T PRK13347 228 VI 229 (453)
T ss_pred HH
Confidence 44
No 224
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.44 E-value=3e+02 Score=23.77 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG 247 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg 247 (484)
...+.++++.+++++|+.++++.-.-... .. ........+-+.+.+++++++
T Consensus 63 ~~~~~~~i~~i~~~~p~~~ii~~~~~p~~-~~------~~~~~~~~~n~~l~~~~~~~~ 114 (157)
T cd01833 63 PDRLRALIDQMRAANPDVKIIVATLIPTT-DA------SGNARIAEYNAAIPGVVADLR 114 (157)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCCC-Cc------chhHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999998875321111 11 113445566666666776654
No 225
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.30 E-value=2.5e+02 Score=28.81 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. -++||=++.+......+ .-....+... ..++.++++||+-|.+|+=+-...+..+.+.+.++.
T Consensus 100 e~l~~l~~~--G~~-rvsiGvqS~~d~~L~~l-~R~~~~~~~~-~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~ 174 (374)
T PRK05799 100 EKLKILKSM--GVN-RLSIGLQAWQNSLLKYL-GRIHTFEEFL-ENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEK 174 (374)
T ss_pred HHHHHHHHc--CCC-EEEEECccCCHHHHHHc-CCCCCHHHHH-HHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHH
Confidence 455666665 443 46777677644444433 3222333333 456788889998776776543223445555555555
Q ss_pred HH
Q 011487 274 WR 275 (484)
Q Consensus 274 Lr 275 (484)
+.
T Consensus 175 ~~ 176 (374)
T PRK05799 175 VV 176 (374)
T ss_pred HH
Confidence 54
No 226
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=26.25 E-value=4.4e+02 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCC-eeEEeecCCCCh---hhHHHHHHHHHHHHHHhHH
Q 011487 238 STIEIARKYGFD-GVDLDWEFPAND---QDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 238 si~~~l~~ygfD-GIDIDwE~p~~~---~~~~~~~~flk~Lr~~l~~ 280 (484)
..++.++.++.+ -+-||+|..... .....+.+.++++.+++++
T Consensus 78 ~f~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~ 124 (191)
T cd06414 78 FVLRLIKGYKLSYPVYYDLEDETQLGAGLSKDQRTDIANAFCETIEA 124 (191)
T ss_pred HHHHHhhccCCCCCeEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 333444555543 357899975322 2345555666666665543
No 227
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.25 E-value=2e+02 Score=29.88 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEF 257 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~ 257 (484)
..++.++..++++ ++||++.-||.+. ..+++.+.+++++.|++ +-|-+-+
T Consensus 58 ~~L~~~L~~~~~~--gIkvI~NaGg~np---------------~~~a~~v~eia~e~Gl~-lkvA~V~ 107 (362)
T PF07287_consen 58 RDLRPLLPAAAEK--GIKVITNAGGLNP---------------AGCADIVREIARELGLS-LKVAVVY 107 (362)
T ss_pred HHHHHHHHHHHhC--CCCEEEeCCCCCH---------------HHHHHHHHHHHHhcCCC-eeEEEEE
Confidence 3455666666666 8999998776432 22888899999999999 8888865
No 228
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=26.19 E-value=2.6e+02 Score=32.18 Aligned_cols=247 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred EeeeeeeCCCCEEEEcCcChHHHHHHHHHHHh--hCCCcEEEEEEC-CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHh
Q 011487 170 YAFLLPEPKTFKLNVTLLDHAKLLELVGTLRV--QNSHIKILLSIG-GGGSDPNVFSKMASTKETRAIFINSTIEIARKY 246 (484)
Q Consensus 170 ~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~--~n~~~KvllSIG-G~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~y 246 (484)
.........++.+...--.....++.+++... -.|-+--..++| .|. .+.....+.-+.++++..++.
T Consensus 222 ~~~~~~~~e~~~ldyyv~~G~~~~~vi~~yt~lTGkp~l~P~Wa~G~~~~---------~~~~~~~e~~v~~~i~~~~~~ 292 (772)
T COG1501 222 YSYVQFSVEGGQLDYYVIAGPTPKDVLEKYTDLTGKPPLPPKWALGWLWT---------SRYTYYDEDEVLEFIDEMRER 292 (772)
T ss_pred eEEEEEEecCCcEEEEEEeCCCHHHHHHHHHHhhCCCCCCCceecCCCce---------eccccccHHHHHHHHhhcccc
Q ss_pred C--CCeeEEeec-CCC-------ChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcC----
Q 011487 247 G--FDGVDLDWE-FPA-------NDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYP---- 312 (484)
Q Consensus 247 g--fDGIDIDwE-~p~-------~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d---- 312 (484)
+ +|+|.||++ +.. ++..-.+-..++++|++ .++.|.+.+-+.-.. ....|+
T Consensus 293 ~IP~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~-----------~Gikl~~~i~P~i~~----d~~~~~e~~~ 357 (772)
T COG1501 293 DIPLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHE-----------KGIKLIVIINPYIKQ----DSPLFKEAIE 357 (772)
T ss_pred cCcceEEEEeehhhhccccceEECcccCCCHHHHHHHHHh-----------cCceEEEEecccccc----CCchHHHHHH
Q ss_pred -----------------hhhhhccCceEEeeeccCCCCCCCCCCCCCccCCCCCCccHH-HHHHHHHHcCCCCCCEeecC
Q 011487 313 -----------------IEAINKYMNWVSPMCFDYHGSWENFTGLHAALNDPRSNISTS-YGIGSWIQAGVPAQKLVMGL 374 (484)
Q Consensus 313 -----------------~~~l~~~vD~v~lm~YD~~g~w~~~~g~~spl~~~~~~~~~~-~~v~~~~~~Gvp~~KlvLGl 374 (484)
+.....++||.|--+.+ ++. ...+.++..||.-=+.=++=
T Consensus 358 ~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~----------------------Ww~~~~~~~l~d~Gv~g~W~D~nE 415 (772)
T COG1501 358 KGYFVKDPDGEIYQADFWPGNSAFPDFTNPDARE----------------------WWASDKKKNLLDLGVDGFWNDMNE 415 (772)
T ss_pred CCeEEECCCCCEeeecccCCcccccCCCCHHHHH----------------------HHHHHHHhHHHhcCccEEEccCCC
Q ss_pred ccceeeeeecCCCCCCCCCCcCCCCCCCcccchHHHHHHhhcCCceEEEcCC-----CceeEEEeCCEEEEECCHHHHHH
Q 011487 375 PLYGRTWKLKDPDVNGIGAPALGVGPGDGVLTYNQIVKFNMEGTAAVVFDAT-----PVAYHSFAGDSWIGYDDVLSIKL 449 (484)
Q Consensus 375 p~YG~~~~~~~~~~~~~~~~~~g~~~~~g~~~y~ei~~~l~~~g~~~~~D~~-----s~~~y~y~~~~~isydd~~Sl~~ 449 (484)
|.-+..+...+...+...-..-+- -....+.+.++.+..+.-...+-.. ...+..|.+++..+| ++++.
T Consensus 416 p~~~~~~~~~~g~~~~~~~N~yp~---~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~w---d~l~~ 489 (772)
T COG1501 416 PEPFDGDGFGNGIDHEEMHNLYPL---LYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSW---DSLRE 489 (772)
T ss_pred CccccccccccccCHHHHhcchhH---HHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccch---HHHHh
Q ss_pred HHHHHHHCCCcEEEEEecC
Q 011487 450 KVQFAKSKGLGGYFFWAIG 468 (484)
Q Consensus 450 K~~~ak~~gLgGv~iW~l~ 468 (484)
-+..+...+|.|+..|.-|
T Consensus 490 si~~~Ls~~~sGi~~wg~D 508 (772)
T COG1501 490 SIPAGLSLSLSGIPFWGHD 508 (772)
T ss_pred hHHhhhchhccCCcccccc
No 229
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=26.15 E-value=3.7e+02 Score=25.84 Aligned_cols=63 Identities=8% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCCh-----------hh
Q 011487 195 LVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND-----------QD 263 (484)
Q Consensus 195 ~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-----------~~ 263 (484)
.+..++.. +..+.++|.|.+. +.++ .+++.+.++ .|+|||+..-|... .+
T Consensus 64 ~~~~~~~~--~~p~~vqi~g~~~---------------~~~~-~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~ 124 (233)
T cd02911 64 EIKALKDS--NVLVGVNVRSSSL---------------EPLL-NAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKD 124 (233)
T ss_pred HHHHhhcc--CCeEEEEecCCCH---------------HHHH-HHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCC
Confidence 33444443 6788999987531 2222 344555665 59999999866321 23
Q ss_pred HHHHHHHHHHHHH
Q 011487 264 MSNLALLFKQWRT 276 (484)
Q Consensus 264 ~~~~~~flk~Lr~ 276 (484)
.+.+.++++++|+
T Consensus 125 p~~l~eiv~avr~ 137 (233)
T cd02911 125 PERLSEFIKALKE 137 (233)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666666665
No 230
>PF09839 DUF2066: Uncharacterized protein conserved in bacteria (DUF2066); InterPro: IPR018642 This entry represents a family of prokaryotic proteins with no known function.
Probab=26.07 E-value=2e+02 Score=27.56 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=47.3
Q ss_pred EEeeeeeeCCCCEEEEcCcChHHHH-HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC
Q 011487 169 YYAFLLPEPKTFKLNVTLLDHAKLL-ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG 247 (484)
Q Consensus 169 i~af~~i~~~gg~l~~~~~~~~~~~-~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg 247 (484)
++-|+..+.++++--+.......+. .+...++.+ |+.+++-++.-.+... ++-.+....|...|.+.-++||
T Consensus 103 vLvWl~~~~~~~r~ll~~~~~~~~~~~l~~~a~~r--Glpl~~Pl~Dl~D~~~-----v~~~dvw~~f~~~i~~aS~RY~ 175 (234)
T PF09839_consen 103 VLVWLVVDDGGGRRLLWEDSDPWLRAWLRQAAKRR--GLPLVLPLMDLEDQMA-----VSASDVWGGFEEPIAAASQRYG 175 (234)
T ss_pred EEEEEEEecCCCceEeeCCCCHHHHHHHHHHHHhC--CCceeecCCchhhhhc-----CCHHHHhccCHHHHHHHHhccC
Confidence 4445555555544333333333333 333344444 9999998877654222 5667788899999999999999
Q ss_pred CCee
Q 011487 248 FDGV 251 (484)
Q Consensus 248 fDGI 251 (484)
-|.|
T Consensus 176 ad~v 179 (234)
T PF09839_consen 176 ADQV 179 (234)
T ss_pred CCcE
Confidence 7655
No 231
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=26.04 E-value=2.3e+02 Score=26.73 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHH----HHHHHHHHHH
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMS----NLALLFKQWR 275 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~----~~~~flk~Lr 275 (484)
+++.+...|+|-|-||+|+.....+++ ++..+++.++
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~ 53 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIR 53 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhc
Confidence 455566789999999999865444444 4444444443
No 232
>PRK06703 flavodoxin; Provisional
Probab=25.95 E-value=4.4e+02 Score=22.92 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhh-CCCcEEE-EEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCC----eeEEeecCCCChhh
Q 011487 190 AKLLELVGTLRVQ-NSHIKIL-LSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFD----GVDLDWEFPANDQD 263 (484)
Q Consensus 190 ~~~~~~i~~lk~~-n~~~Kvl-lSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfD----GIDIDwE~p~~~~~ 263 (484)
..+..+++.+++. ..+.++. +..|||+. ..-...++.+.+.|++.|+. .+.+++.. ...++
T Consensus 66 ~~~~~f~~~l~~~~l~~k~~~vfg~g~~~y------------~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p-~~~~~ 132 (151)
T PRK06703 66 YEAEDFHEDLENIDLSGKKVAVFGSGDTAY------------PLFCEAVTIFEERLVERGAELVQEGLKIELAP-ETDED 132 (151)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEccCCCCh------------HHHHHHHHHHHHHHHHCCCEEcccCeEEecCC-CchhH
Confidence 3456676666543 2344443 34566542 11235566788889998874 44455542 12466
Q ss_pred HHHHHHHHHHHHHHhH
Q 011487 264 MSNLALLFKQWRTSIN 279 (484)
Q Consensus 264 ~~~~~~flk~Lr~~l~ 279 (484)
.+...+|.++|-+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 133 VEKCSNFAIAFAEKFA 148 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888888876654
No 233
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=25.74 E-value=4.3e+02 Score=24.57 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe-ecCCCChhhHHHHHHHH
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD-WEFPANDQDMSNLALLF 271 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID-wE~p~~~~~~~~~~~fl 271 (484)
..+++.++++..--+|++...+...... ..-..+.+.|.+.++.+++ +.+++.++ ||--. .........|
T Consensus 21 ~~l~~~a~~~~~~d~v~~~p~~~~~~k~--~~~~~~~~~R~~m~~~a~~-----~~~~~~v~~~E~~~--~~~syT~~tl 91 (203)
T PRK00071 21 LAIAEEAAERLGLDEVWFLPNPGPPHKP--QKPLAPLEHRLAMLELAIA-----DNPRFSVSDIELER--PGPSYTIDTL 91 (203)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCCCC--CCCCCCHHHHHHHHHHHhc-----CCCceEEeHHHHhC--CCCCCHHHHH
Confidence 3444555554333467777766542111 1124567778777665544 45667776 55321 1122234667
Q ss_pred HHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccCceEEee
Q 011487 272 KQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYMNWVSPM 326 (484)
Q Consensus 272 k~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~vD~v~lm 326 (484)
+.|++.... ..+.+-+-.-.... ....+++++|.+.++++.+-
T Consensus 92 ~~l~~~~p~-------~~~~fiiG~D~l~~-----l~~W~~~~~i~~~~~~iv~~ 134 (203)
T PRK00071 92 RELRARYPD-------VELVFIIGADALAQ-----LPRWKRWEEILDLVHFVVVP 134 (203)
T ss_pred HHHHHHCCC-------CcEEEEEcHHHhhh-----cccccCHHHHHHhCcEEEEe
Confidence 777776531 22333222111111 24566788888888877553
No 234
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=25.64 E-value=1.7e+02 Score=29.76 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHH
Q 011487 192 LLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLF 271 (484)
Q Consensus 192 ~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~fl 271 (484)
.+++++.++++.++..++.-.||.. .+.+.+.++|+|++.+||... +
T Consensus 226 ~k~i~~~i~~~~~~~~ilh~cg~~~---------------------~~~~~~~~~~~~~is~d~~~d------------l 272 (346)
T PRK00115 226 MKRIVAELKREHPDVPVILFGKGAG---------------------ELLEAMAETGADVVGLDWTVD------------L 272 (346)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCcH---------------------HHHHHHHhcCCCEEeeCCCCC------------H
Confidence 3556667776644555665445421 235567789999999999732 5
Q ss_pred HHHHHHhH
Q 011487 272 KQWRTSIN 279 (484)
Q Consensus 272 k~Lr~~l~ 279 (484)
++.++.++
T Consensus 273 ~~~k~~~g 280 (346)
T PRK00115 273 AEARRRVG 280 (346)
T ss_pred HHHHHHcC
Confidence 66666664
No 235
>PRK13042 superantigen-like protein; Reviewed
Probab=25.58 E-value=1.4e+02 Score=29.73 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=9.3
Q ss_pred ccccCCCCCCCCCCCCCCCCC
Q 011487 75 EVTPYPVVPASDPHTAVPTSP 95 (484)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~p 95 (484)
|++++-.+-+++|++..||+|
T Consensus 43 ~~s~~~k~~~~qp~p~~ttp~ 63 (291)
T PRK13042 43 STPPSTKVEAPQSKPNATTPP 63 (291)
T ss_pred cCCCcccccCCCCCCCCCCCC
Confidence 333333334455654444443
No 236
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.35 E-value=5.1e+02 Score=24.68 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC-CCeeEEeecC
Q 011487 204 SHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG-FDGVDLDWEF 257 (484)
Q Consensus 204 ~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg-fDGIDIDwE~ 257 (484)
.|+||+..||---... ..-...+-..+++..+.++-+ +++|+|-||.
T Consensus 118 eGl~ViaCIGE~leeR-------EaG~t~dVv~~Ql~aiad~v~~w~niviAYEP 165 (247)
T KOG1643|consen 118 EGLKVIACIGETLEER-------EAGKTLDVVFRQLKAIADKVKDWSNIVIAYEP 165 (247)
T ss_pred cCCeEEEEecccHHhh-------hcCchHHHHHHHHHHHHHhcCCccceEEEeec
Confidence 4999999999642201 111223445677778888776 8999999995
No 237
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.25 E-value=2.5e+02 Score=25.86 Aligned_cols=65 Identities=14% Similarity=-0.008 Sum_probs=37.2
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhcc
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKY 319 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~ 319 (484)
++.+.+.|.|||-+.-+.. +....+++.+|+.- ..+.+.+... ...-.++++...
T Consensus 72 ~~~~~~~gadgv~vh~~~~------~~~~~~~~~~~~~g---------~~~~~~~~~~----------t~~e~~~~~~~~ 126 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS------EHIHRLLQLIKDLG---------AKAGIVLNPA----------TPLEFLEYVLPD 126 (210)
T ss_pred HHHHHHcCCCEEEEccCCc------hhHHHHHHHHHHcC---------CcEEEEECCC----------CCHHHHHHHHhh
Confidence 6677799999999876531 22344455444421 2234443321 111124666667
Q ss_pred CceEEeeecc
Q 011487 320 MNWVSPMCFD 329 (484)
Q Consensus 320 vD~v~lm~YD 329 (484)
+|++.+|+.+
T Consensus 127 ~d~i~~~~~~ 136 (210)
T TIGR01163 127 VDLVLLMSVN 136 (210)
T ss_pred CCEEEEEEEc
Confidence 8999999875
No 238
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.19 E-value=2.8e+02 Score=28.09 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=46.4
Q ss_pred cEEEEeeeeeeCCCCEEEEcCcCh------HHHHHHHHHH-HhhCCCcEEE-EEECCCCCCchhhhhhcCCHHHHHHHHH
Q 011487 166 THIYYAFLLPEPKTFKLNVTLLDH------AKLLELVGTL-RVQNSHIKIL-LSIGGGGSDPNVFSKMASTKETRAIFIN 237 (484)
Q Consensus 166 ThIi~af~~i~~~gg~l~~~~~~~------~~~~~~i~~l-k~~n~~~Kvl-lSIGG~~~~~~~f~~l~~~~~~r~~fi~ 237 (484)
..+=|+-..+..+.|-+.+..+.+ +.++.+.+.. ++++|+.+=| |...|.+ +|...|..|..
T Consensus 135 k~~PyGiyd~~~n~g~v~vg~s~dTa~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~Gg----------sN~~r~r~wk~ 204 (311)
T PF07592_consen 135 KAIPYGIYDPAANEGWVSVGTSHDTADFAVDSIRRWWEEMGKARYPHAKRLLITADNGG----------SNGSRRRLWKK 204 (311)
T ss_pred eeccceeEeccCCeEEEEEecCcccHHHHHHHHHHHHHHhChhhcCchheEEEeccCCC----------CccchhHHHHH
Confidence 344444445565556666654432 3455666666 7778877544 4443332 33457889999
Q ss_pred HHHHHHHHhCCC
Q 011487 238 STIEIARKYGFD 249 (484)
Q Consensus 238 si~~~l~~ygfD 249 (484)
.+.+|.++.|+.
T Consensus 205 ~L~~la~~~gl~ 216 (311)
T PF07592_consen 205 RLQELADETGLS 216 (311)
T ss_pred HHHHHHHHhCCE
Confidence 999999998864
No 239
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=25.16 E-value=80 Score=24.90 Aligned_cols=30 Identities=13% Similarity=0.353 Sum_probs=26.2
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHhCCC
Q 011487 220 NVFSKMASTKETRAIFINSTIEIARKYGFD 249 (484)
Q Consensus 220 ~~f~~l~~~~~~r~~fi~si~~~l~~ygfD 249 (484)
..|..+..+++.|++|.++=-+++++||+.
T Consensus 7 ~~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 7 KLLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 345667899999999999999999999874
No 240
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=25.03 E-value=5.5e+02 Score=28.34 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLAL 269 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~ 269 (484)
..+..+++.+|++ ++-+=|.+...+-+.....+.-..++...+-+-.-+++++++||+-|.|-.... +...+++
T Consensus 145 e~~~~vV~~ake~--~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsS----nv~~mi~ 218 (606)
T PRK00694 145 EKFSPLVEKCKRL--GKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSS----NPKVMVA 218 (606)
T ss_pred HHHHHHHHHHHHC--CCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----CHHHHHH
Confidence 5778888888887 565556665444323333333334444444444456677899999999998743 3445555
Q ss_pred HHHHHHHHhH
Q 011487 270 LFKQWRTSIN 279 (484)
Q Consensus 270 flk~Lr~~l~ 279 (484)
..+.|.++++
T Consensus 219 AyrlLa~~~d 228 (606)
T PRK00694 219 AYRQLAKDLD 228 (606)
T ss_pred HHHHHHHHhh
Confidence 5555555554
No 241
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.86 E-value=2.4e+02 Score=28.89 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. .++||=++.+.+....+ .-....+.. ...++.+++.||+-|.+|+-+-...+..+.+.+.++.
T Consensus 101 e~l~~l~~~--Gv~-risiGvqS~~~~~l~~l-gR~~~~~~~-~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 101 EWCKGLKGA--GIN-RLSLGVQSFRDDKLLFL-GRQHSAKNI-APAIETALKSGIENISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred HHHHHHHHc--CCC-EEEEecccCChHHHHHh-CCCCCHHHH-HHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHH
Confidence 344556655 443 56666666644544444 222233333 3457788889999888887653333444555544444
Q ss_pred HH
Q 011487 274 WR 275 (484)
Q Consensus 274 Lr 275 (484)
+.
T Consensus 176 ~~ 177 (360)
T TIGR00539 176 AK 177 (360)
T ss_pred HH
Confidence 43
No 242
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.78 E-value=2.7e+02 Score=27.23 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 228 TKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 228 ~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+....+.-.+. +..+++.|.|||.|=+-.+...-|.+....|++.
T Consensus 68 s~~E~~~M~~d-i~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~ 112 (248)
T PRK11572 68 SDGEFAAMLED-IATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA 112 (248)
T ss_pred CHHHHHHHHHH-HHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH
Confidence 33333333333 6677889999999988654344555555444444
No 243
>PRK09989 hypothetical protein; Provisional
Probab=24.51 E-value=1.5e+02 Score=28.60 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHH
Q 011487 237 NSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQ 280 (484)
Q Consensus 237 ~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~ 280 (484)
...++.++++|||||+|-..+. .+ .+++++.+.+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~---~~-------~~~~~~~l~~ 51 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD---YS-------TLQIQKQLEQ 51 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc---CC-------HHHHHHHHHH
Confidence 3567889999999999965321 11 4567777765
No 244
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.42 E-value=1.2e+02 Score=29.62 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeeEEeecCCCChhhHHHH-HHHHHHHHHHhHHhhhhcCCCCeEEEE
Q 011487 236 INSTIEIARKYGFDGVDLDWEFPANDQDMSNL-ALLFKQWRTSINQEARITNTSPLLLTA 294 (484)
Q Consensus 236 i~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~-~~flk~Lr~~l~~~~~~~~~~~~~Lsv 294 (484)
....++.+++.|||||+|....+........+ ..-++++++.+.+ .++.++.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-------TGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-------cCCCceE
No 245
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.40 E-value=5.8e+02 Score=28.31 Aligned_cols=85 Identities=11% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLAL 269 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~ 269 (484)
..+..+++.+|++ ++-+=|.+...+-+....++.-..++...+-+-.-+++++++||+-|.|-..... ......
T Consensus 141 e~~~~~v~~ak~~--~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~----~~~~V~ 214 (611)
T PRK02048 141 DRFVPFLNICKEN--HTAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASN----TVVMVR 214 (611)
T ss_pred HHHHHHHHHHHHC--CCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC----cHHHHH
Confidence 5567788888887 5655566654443233333333344444444444566778999999999987432 344455
Q ss_pred HHHHHHHHhHH
Q 011487 270 LFKQWRTSINQ 280 (484)
Q Consensus 270 flk~Lr~~l~~ 280 (484)
-.|.|.++|.+
T Consensus 215 AyRlLa~~l~~ 225 (611)
T PRK02048 215 TVRLLVAVMEA 225 (611)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 246
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=24.00 E-value=5.8e+02 Score=28.89 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLAL 269 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~ 269 (484)
..+..+++.+|++ ++-+=|.+...+-+.....+.-.+++...+-+-.-+++++++||+-|.|-.... +......
T Consensus 210 e~f~~~v~~ak~~--~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsS----n~~~~V~ 283 (733)
T PLN02925 210 EVFTPLVEKCKKY--GRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKAS----NPVVMVQ 283 (733)
T ss_pred HHHHHHHHHHHHC--CCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----ChHHHHH
Confidence 3455678888877 565556665444333333333334444444444556677899999999998743 2333444
Q ss_pred HHHHHHHHhHH
Q 011487 270 LFKQWRTSINQ 280 (484)
Q Consensus 270 flk~Lr~~l~~ 280 (484)
..|.|.++|.+
T Consensus 284 AyR~La~~L~~ 294 (733)
T PLN02925 284 AYRLLVAEMYV 294 (733)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 247
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.82 E-value=5.4e+02 Score=24.74 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhc
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINK 318 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~ 318 (484)
.++.+.+.|.|||-|--+.+ +....+++.+|+ .++...+.+.+.... -.++.+.+
T Consensus 96 fi~~~~~aG~~giiipDl~~------ee~~~~~~~~~~-----------~g~~~i~~i~P~T~~--------~~i~~i~~ 150 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLPP------EEAEEFREAAKE-----------YGLDLIFLVAPTTPD--------ERIKKIAE 150 (242)
T ss_pred HHHHHHHCCCcEEEECCCCH------HHHHHHHHHHHH-----------cCCcEEEEeCCCCCH--------HHHHHHHh
Confidence 35556677999999944321 223334444433 233333333322111 12456666
Q ss_pred -cCceEEeeecc
Q 011487 319 -YMNWVSPMCFD 329 (484)
Q Consensus 319 -~vD~v~lm~YD 329 (484)
..|+|.+|+..
T Consensus 151 ~~~~~vy~~s~~ 162 (242)
T cd04724 151 LASGFIYYVSRT 162 (242)
T ss_pred hCCCCEEEEeCC
Confidence 88999999864
No 248
>PRK10426 alpha-glucosidase; Provisional
Probab=23.48 E-value=2.6e+02 Score=31.30 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCC-Cchhhhhh----------------------------cCCHHHHHHHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGS-DPNVFSKM----------------------------ASTKETRAIFINSTI 240 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~-~~~~f~~l----------------------------~~~~~~r~~fi~si~ 240 (484)
...+++++.||++ |+|+++.|--.-. +...|.++ +.+++.|+=|.+.+.
T Consensus 269 Pdp~~mi~~L~~~--G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~ 346 (635)
T PRK10426 269 PQLDSRIKQLNEE--GIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIK 346 (635)
T ss_pred CCHHHHHHHHHHC--CCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHH
Confidence 3457888999987 8999988743200 01111110 467889998989888
Q ss_pred HHHHHhCCCeeEEee
Q 011487 241 EIARKYGFDGVDLDW 255 (484)
Q Consensus 241 ~~l~~ygfDGIDIDw 255 (484)
+.+.++|+||+=.|+
T Consensus 347 ~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 347 KNMIGLGCSGWMADF 361 (635)
T ss_pred HHHhhcCCCEEeeeC
Confidence 899999999998898
No 249
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=23.36 E-value=6.8e+02 Score=24.15 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 191 KLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
...++++.+|.. ++|||+|.......+. .+.+. ++++-++++|.|-+-|-.-
T Consensus 113 ~~~~l~~~~~~~--~~~vI~S~H~F~~TP~-----------~~~l~-~~~~~m~~~gaDi~KiAv~ 164 (238)
T PRK13575 113 KHQRLITHLQQY--NKEVVISHHNFESTPP-----------LDELK-FIFFKMQKFNPEYVKLAVM 164 (238)
T ss_pred HHHHHHHHHHHc--CCEEEEecCCCCCCCC-----------HHHHH-HHHHHHHHhCCCEEEEEec
Confidence 344455555544 8999999987654221 12333 4777888889898888764
No 250
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=23.25 E-value=90 Score=24.71 Aligned_cols=48 Identities=10% Similarity=-0.079 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHH
Q 011487 227 STKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274 (484)
Q Consensus 227 ~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~L 274 (484)
-++.-|..|++.+.++-+..+.|++-.|.+-.-+...+..+-.||.+|
T Consensus 16 Lt~~ER~~i~qaL~~y~~~Rnvd~Li~~v~pVLDtPaK~~iw~~i~~l 63 (80)
T cd07355 16 LTPPERYGIKKALEDYFQHRNIDTLIVDVYPVLDTPAKQVIWQYIYQL 63 (80)
T ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999998766667777777777666
No 251
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.14 E-value=6.9e+02 Score=24.42 Aligned_cols=110 Identities=8% Similarity=0.099 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHH
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLA 268 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~ 268 (484)
-+...+.++.+|++ |.+|.+++-.... . -..|+..+++.+.++|.|.|-|---. ..-....+.
T Consensus 108 ~~~~~~~i~~ak~~--G~~v~~~~~~a~~---------~----~~~~~~~~~~~~~~~g~~~i~l~DT~--G~~~P~~v~ 170 (266)
T cd07944 108 FDEALPLIKAIKEK--GYEVFFNLMAISG---------Y----SDEELLELLELVNEIKPDVFYIVDSF--GSMYPEDIK 170 (266)
T ss_pred HHHHHHHHHHHHHC--CCeEEEEEEeecC---------C----CHHHHHHHHHHHHhCCCCEEEEecCC--CCCCHHHHH
Confidence 45667777777777 7888877643211 1 24556667777778899988775432 233456677
Q ss_pred HHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCc-ChhhhhccCceEEeeecc
Q 011487 269 LLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGY-PIEAINKYMNWVSPMCFD 329 (484)
Q Consensus 269 ~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~-d~~~l~~~vD~v~lm~YD 329 (484)
.+++.||+.++. +. .+.++++... +...- -+..+..-+|+|..-..-
T Consensus 171 ~lv~~l~~~~~~--------~~--~i~~H~Hn~~----Gla~AN~laA~~aGa~~vd~s~~G 218 (266)
T cd07944 171 RIISLLRSNLDK--------DI--KLGFHAHNNL----QLALANTLEAIELGVEIIDATVYG 218 (266)
T ss_pred HHHHHHHHhcCC--------Cc--eEEEEeCCCc----cHHHHHHHHHHHcCCCEEEEeccc
Confidence 788888887641 12 3455554444 11111 135555667777555444
No 252
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.00 E-value=4.2e+02 Score=23.50 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD 254 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID 254 (484)
...++++++.+|+. +.++++..---..................++.+.+.++.+++++--||+.
T Consensus 82 ~~~~~~li~~~~~~--~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~ 145 (183)
T cd04501 82 KDNIRSMVELAEAN--GIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFY 145 (183)
T ss_pred HHHHHHHHHHHHHC--CCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEech
Confidence 46677888888775 56766643111100110011122346777888888888888877666654
No 253
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=22.96 E-value=3.4e+02 Score=27.83 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. -++||=++++......+-+ ...++.+. ..++.+++.||+-|.+|+=+-...+..+.+.+-++.
T Consensus 104 e~l~~lk~~--G~n-risiGvQS~~d~vL~~l~R-~~~~~~~~-~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 178 (353)
T PRK05904 104 SQINLLKKN--KVN-RISLGVQSMNNNILKQLNR-THTIQDSK-EAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNF 178 (353)
T ss_pred HHHHHHHHc--CCC-EEEEecccCCHHHHHHcCC-CCCHHHHH-HHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHH
Confidence 444566665 554 4788878775454444433 23344433 567788889998777776543223445555544444
Q ss_pred H
Q 011487 274 W 274 (484)
Q Consensus 274 L 274 (484)
+
T Consensus 179 ~ 179 (353)
T PRK05904 179 I 179 (353)
T ss_pred H
Confidence 4
No 254
>PRK05568 flavodoxin; Provisional
Probab=22.95 E-value=4.8e+02 Score=22.27 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCcEEE-EEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCC----eeEEeecCCCChhhHH
Q 011487 191 KLLELVGTLRVQNSHIKIL-LSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFD----GVDLDWEFPANDQDMS 265 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~Kvl-lSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfD----GIDIDwE~p~~~~~~~ 265 (484)
.+..+++.++....+.++. ++..||.. .. .++.+.+.+++.|+. |+.+.+. | +.++.+
T Consensus 68 ~~~~f~~~~~~~~~~k~~~~f~t~G~~~-~~--------------~~~~~~~~l~~~g~~~~~~~~~~~~~-p-~~~~l~ 130 (142)
T PRK05568 68 EMEPFVESISSLVKGKKLVLFGSYGWGD-GE--------------WMRDWVERMEGYGANLVNEGLIVNNT-P-EGEGIE 130 (142)
T ss_pred hHHHHHHHhhhhhCCCEEEEEEccCCCC-Ch--------------HHHHHHHHHHHCCCEEeCCcEEEecC-C-CHHHHH
Confidence 4556666654433344443 45566643 11 234455667777764 4555543 2 445555
Q ss_pred HHHHHHHHH
Q 011487 266 NLALLFKQW 274 (484)
Q Consensus 266 ~~~~flk~L 274 (484)
...+|.++|
T Consensus 131 ~~~~~g~~l 139 (142)
T PRK05568 131 KCKALGEAL 139 (142)
T ss_pred HHHHHHHHH
Confidence 555555555
No 255
>PRK13660 hypothetical protein; Provisional
Probab=22.81 E-value=3.1e+02 Score=25.45 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhCCCeeEEeecCCCCh-hhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCC
Q 011487 232 RAIFINSTIEIARKYGFDGVDLDWEFPAND-QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRG 310 (484)
Q Consensus 232 r~~fi~si~~~l~~ygfDGIDIDwE~p~~~-~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~ 310 (484)
+..+-+.|..+++ +|++ |-..+.. .-..--...+-+||+.. +.+.|.+.+|+......|.....
T Consensus 28 K~aL~~~l~~~~e----~G~~--wfi~ggalG~d~wAaEvvl~LK~~y---------p~lkL~~~~PF~~q~~~W~e~~q 92 (182)
T PRK13660 28 KKAIKRKLIALLE----EGLE--WVIISGQLGVELWAAEVVLELKEEY---------PDLKLAVITPFEEHGENWNEANQ 92 (182)
T ss_pred HHHHHHHHHHHHH----CCCC--EEEECCcchHHHHHHHHHHHHHhhC---------CCeEEEEEeCccchhhcCCHHHH
Confidence 3444556666666 4533 4333221 11222345566777664 57889999987654432322222
Q ss_pred cChhhhhccCceEEeeeccC
Q 011487 311 YPIEAINKYMNWVSPMCFDY 330 (484)
Q Consensus 311 ~d~~~l~~~vD~v~lm~YD~ 330 (484)
--+..|...+|+|...+-.+
T Consensus 93 ~~y~~i~~~aD~v~~vs~~~ 112 (182)
T PRK13660 93 EKLANILKQADFVKSISKRP 112 (182)
T ss_pred HHHHHHHHhCCEEEEecCCC
Confidence 33578888999998876553
No 256
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.64 E-value=3.2e+02 Score=27.15 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=45.0
Q ss_pred HHHHHhhCCC-cEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEE
Q 011487 196 VGTLRVQNSH-IKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDL 253 (484)
Q Consensus 196 i~~lk~~n~~-~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDI 253 (484)
++.++....+ +.+++.=-||-.+...+....-+.++++.|+++|..-|+..|+|=+-|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 4556654444 677788888976666777778889999999999999999999776554
No 257
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=22.55 E-value=6e+02 Score=27.02 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=14.9
Q ss_pred HHHHHHhCCCeeEEeecCC
Q 011487 240 IEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p 258 (484)
++-|.++|+|.|-||+...
T Consensus 126 i~~L~~~gvd~V~islka~ 144 (442)
T TIGR01290 126 VDRLVDLGVGHVTITINAI 144 (442)
T ss_pred HHHHHHCCCCeEEEeccCC
Confidence 4556668999999999865
No 258
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=22.49 E-value=6.7e+02 Score=23.76 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCEeecCccceeeeeecCCCCCCCCCCc-CCCCCCCcccchHHHHHH
Q 011487 368 QKLVMGLPLYGRTWKLKDPDVNGIGAPA-LGVGPGDGVLTYNQIVKF 413 (484)
Q Consensus 368 ~KlvLGlp~YG~~~~~~~~~~~~~~~~~-~g~~~~~g~~~y~ei~~~ 413 (484)
.-|.+++.-.|+--.+.++-.......+ .+....+|.++..++.++
T Consensus 181 p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 181 PLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLREL 227 (228)
T ss_pred CEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhh
Confidence 3577888877876665553332222222 122233888999888765
No 259
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.43 E-value=3.5e+02 Score=29.87 Aligned_cols=10 Identities=30% Similarity=0.245 Sum_probs=5.0
Q ss_pred CCeeEEeecC
Q 011487 248 FDGVDLDWEF 257 (484)
Q Consensus 248 fDGIDIDwE~ 257 (484)
|||--|+.|.
T Consensus 573 f~~~~~~~~~ 582 (585)
T PRK14950 573 FDAQIISVEE 582 (585)
T ss_pred cCCeEEeeCC
Confidence 4555555543
No 260
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.05 E-value=2.4e+02 Score=30.24 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=54.2
Q ss_pred EEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhh--hcCCHHHHHHHHHHHHHHHHH
Q 011487 168 IYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSK--MASTKETRAIFINSTIEIARK 245 (484)
Q Consensus 168 Ii~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~--l~~~~~~r~~fi~si~~~l~~ 245 (484)
..++|..+-|+|.. .+....-+-+.++++.|+++ |++.++.+-.|.. +..+.+ -..+++..+.|++=..-.+++
T Consensus 72 fSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dl-P~~L~~~GGW~n~~~v~~F~~YA~~~f~~ 147 (467)
T TIGR01233 72 ISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDT-PEALHSNGDFLNRENIEHFIDYAAFCFEE 147 (467)
T ss_pred EecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCC-cHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45577777776521 12211124567888999987 9999999987754 443322 134677888899888888999
Q ss_pred hCCCeeEE
Q 011487 246 YGFDGVDL 253 (484)
Q Consensus 246 ygfDGIDI 253 (484)
+| | |+.
T Consensus 148 fg-d-Vk~ 153 (467)
T TIGR01233 148 FP-E-VNY 153 (467)
T ss_pred hC-C-CCE
Confidence 98 7 763
No 261
>PRK13335 superantigen-like protein; Reviewed
Probab=22.04 E-value=1.9e+02 Score=29.33 Aligned_cols=10 Identities=0% Similarity=0.109 Sum_probs=4.8
Q ss_pred ChhhhhccCc
Q 011487 312 PIEAINKYMN 321 (484)
Q Consensus 312 d~~~l~~~vD 321 (484)
...++++++|
T Consensus 335 q~~RMgdvId 344 (356)
T PRK13335 335 QEHRMADVID 344 (356)
T ss_pred chhhhccccc
Confidence 3444555544
No 262
>PHA03378 EBNA-3B; Provisional
Probab=21.89 E-value=3.9e+02 Score=29.99 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=3.0
Q ss_pred CCcEEEE
Q 011487 458 GLGGYFF 464 (484)
Q Consensus 458 gLgGv~i 464 (484)
|+||+++
T Consensus 973 g~~~~a~ 979 (991)
T PHA03378 973 GTGDIAV 979 (991)
T ss_pred ccCCccc
Confidence 4444443
No 263
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.86 E-value=1.6e+02 Score=31.82 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCcccccCCCC
Q 011487 50 PDHPWPAPVPPSPSYIAGPGMDPYTEVTPYPVV 82 (484)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (484)
|+.--.+.++|+| +.++|+|+|.|-.+-+++-
T Consensus 403 p~~aA~~~Ss~ap-~~~~~~v~P~~q~~~~~~p 434 (830)
T KOG4152|consen 403 PATAATATSSPAP-AAAAPAVQPLTQVGITLLP 434 (830)
T ss_pred cccccccccCCCc-cccccccCchhhccccccC
Confidence 4444456678888 5789999999988766654
No 264
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.76 E-value=4.2e+02 Score=22.34 Aligned_cols=90 Identities=14% Similarity=-0.018 Sum_probs=51.0
Q ss_pred CCCCCccEEEEeeeeeeCCCCEE-EEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHH
Q 011487 160 IDTSYFTHIYYAFLLPEPKTFKL-NVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINS 238 (484)
Q Consensus 160 i~~~~~ThIi~af~~i~~~gg~l-~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~s 238 (484)
......+.|++.+..-|. .... .........+.++++.+++.+++.+|++----....... ........+.+.
T Consensus 61 ~~~~~~d~vil~~G~ND~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~-----~~~~~~~~~~~~ 134 (187)
T cd00229 61 LLKDKPDLVIIELGTNDL-GRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREG-----LLGRALPRYNEA 134 (187)
T ss_pred hccCCCCEEEEEeccccc-ccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch-----hhHHHHHHHHHH
Confidence 334567777776533221 1000 111223466778888888877889888654433221110 133556777888
Q ss_pred HHHHHHHhC----CCeeEEee
Q 011487 239 TIEIARKYG----FDGVDLDW 255 (484)
Q Consensus 239 i~~~l~~yg----fDGIDIDw 255 (484)
+.++.++++ +.-+|+.-
T Consensus 135 ~~~~~~~~~~~~~~~~~d~~~ 155 (187)
T cd00229 135 IKAVAAENPAPSGVDLVDLAA 155 (187)
T ss_pred HHHHHHHcCCCcceEEEEhhh
Confidence 888888887 55555553
No 265
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.64 E-value=1.9e+02 Score=25.80 Aligned_cols=65 Identities=20% Similarity=0.087 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEe
Q 011487 189 HAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLD 254 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDID 254 (484)
...+..+++.+++++++.+|++.---........ .........+.+.+.+.++.+++|+.=||+.
T Consensus 80 ~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~~ 144 (189)
T cd01825 80 RQQLREFIKRLRQILPNASILLVGPPDSLQKTGA-GRWRTPPGLDAVIAAQRRVAKEEGIAFWDLY 144 (189)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCC-CCcccCCcHHHHHHHHHHHHHHcCCeEEeHH
Confidence 4678888999999889999986421100000000 0011123456777888888888885555543
No 266
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.59 E-value=84 Score=33.36 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=38.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhH
Q 011487 225 MASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSIN 279 (484)
Q Consensus 225 l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~ 279 (484)
.+++..-+++.+..|+++|.+.|||| -|-..... ......|....|-|.-.|+
T Consensus 99 plrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~-~PS~k~F~~IFK~LY~~lD 151 (622)
T COG5185 99 PLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLK-QPSQKGFIIIFKWLYLRLD 151 (622)
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhc-CCccccHHHHHHHHHhccC
Confidence 48888899999999999999999998 22222111 1235667777888877775
No 267
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.51 E-value=1.5e+02 Score=28.94 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHH
Q 011487 239 TIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQW 274 (484)
Q Consensus 239 i~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~L 274 (484)
+++.+...|||.|-||.|+-. .+...+..+++..
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~--~~~~~~~~~~~a~ 58 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAP--NDVRTILSQLQAL 58 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCC--CCHHHHHHHHHHH
Confidence 566777889999999999853 4555555555443
No 268
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=21.47 E-value=7e+02 Score=23.62 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHH
Q 011487 191 KLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALL 270 (484)
Q Consensus 191 ~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~f 270 (484)
...++++.+++. +.|||+|......... ... ..+++.-++++|.|=+-|-..-- +..|...+..|
T Consensus 106 ~~~~l~~~~~~~--~~kvI~S~H~f~~tp~-----------~~~-l~~~~~~~~~~gaDivKia~~a~-~~~D~~~ll~~ 170 (228)
T TIGR01093 106 AVKELINIAKKG--GTKIIMSYHDFQKTPS-----------WEE-IVERLEKALSYGADIVKIAVMAN-SKEDVLTLLEI 170 (228)
T ss_pred HHHHHHHHHHHC--CCEEEEeccCCCCCCC-----------HHH-HHHHHHHHHHhCCCEEEEEeccC-CHHHHHHHHHH
Confidence 344454444544 8999999876533111 122 33567778889999999888643 34444444444
Q ss_pred HHHH
Q 011487 271 FKQW 274 (484)
Q Consensus 271 lk~L 274 (484)
.+++
T Consensus 171 ~~~~ 174 (228)
T TIGR01093 171 TNKV 174 (228)
T ss_pred HHHH
Confidence 4443
No 269
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.36 E-value=7.6e+02 Score=23.95 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLAL 269 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~ 269 (484)
..+.++++.+|+. +.|||+|......... . ++ +.++++-++++|.|=+-|-..-- +..|...+..
T Consensus 122 ~~~~~l~~~~~~~--~~kvI~S~H~f~~tP~--------~---~~-l~~~~~~~~~~gaDivKia~~a~-~~~D~~~ll~ 186 (253)
T PRK02412 122 DVVKEMVAFAHEH--GVKVVLSYHDFEKTPP--------K---EE-IVERLRKMESLGADIVKIAVMPQ-SEQDVLTLLN 186 (253)
T ss_pred HHHHHHHHHHHHc--CCEEEEeeCCCCCCcC--------H---HH-HHHHHHHHHHhCCCEEEEEecCC-CHHHHHHHHH
Confidence 4455565555554 7999999986543211 1 12 34677778889999999988642 3344444444
Q ss_pred HHHHH
Q 011487 270 LFKQW 274 (484)
Q Consensus 270 flk~L 274 (484)
+.+++
T Consensus 187 ~~~~~ 191 (253)
T PRK02412 187 ATREM 191 (253)
T ss_pred HHHHH
Confidence 44443
No 270
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=21.34 E-value=1e+02 Score=30.16 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEEC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIG 213 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIG 213 (484)
..+.++++.||+.||++|||++|-
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVS 175 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVS 175 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEec
Confidence 456778899999999999999984
No 271
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=21.30 E-value=2.8e+02 Score=26.02 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEEeecCC-CChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCC
Q 011487 230 ETRAIFINSTIEIARKYGFDGVDLDWEFP-ANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGP 308 (484)
Q Consensus 230 ~~r~~fi~si~~~l~~ygfDGIDIDwE~p-~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~ 308 (484)
.....+.+.+.+.+++++.+-|-||==.. ....+...+..+++.|...+++. +.++-+....... .
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-------~~t~llt~~~~~~------~ 164 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-------GVTTLLTSEMPSG------S 164 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-------TEEEEEEEEESSS------S
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-------CCEEEEEEccccC------c
Confidence 34578899999999999999999994211 11233455667788888887653 3332233221111 1
Q ss_pred CCcChhhhhc-cCceEEeeeccCCC
Q 011487 309 RGYPIEAINK-YMNWVSPMCFDYHG 332 (484)
Q Consensus 309 ~~~d~~~l~~-~vD~v~lm~YD~~g 332 (484)
.......+.. .+|-|..+.|...+
T Consensus 165 ~~~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 165 EDDGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccccchhhhcccEEEEEEEEeeC
Confidence 1112244556 79999999987543
No 272
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.15 E-value=3.7e+02 Score=27.74 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |+. -+|||=++.+......+-+ ....+... ..++.+++.||+-|.+|+=+-...+..+.+..-++.
T Consensus 104 ~~l~~l~~~--G~n-rislGvQS~~~~~L~~l~R-~~~~~~~~-~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~ 178 (370)
T PRK06294 104 SYIRALALT--GIN-RISIGVQTFDDPLLKLLGR-THSSSKAI-DAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQ 178 (370)
T ss_pred HHHHHHHHC--CCC-EEEEccccCCHHHHHHcCC-CCCHHHHH-HHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 445666665 443 5688877775544444332 22333433 456678899999888887553333444444444444
Q ss_pred H
Q 011487 274 W 274 (484)
Q Consensus 274 L 274 (484)
+
T Consensus 179 ~ 179 (370)
T PRK06294 179 A 179 (370)
T ss_pred H
Confidence 3
No 273
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=21.08 E-value=3.3e+02 Score=24.61 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHH-HHHHHhCCCe-eEEeecCCCChhhHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTI-EIARKYGFDG-VDLDWEFPANDQDMSNL 267 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~-~~l~~ygfDG-IDIDwE~p~~~~~~~~~ 267 (484)
....+.++.+++. ++++++.|.-... + .....+.++++. .++++++++| -++.+-.. +.....++
T Consensus 109 ~~~~~~l~~~~~~--~~p~ivvlNK~D~--------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~-Sa~~g~gi 175 (188)
T PF00009_consen 109 PQTEEHLKILREL--GIPIIVVLNKMDL--------I--EKELEEIIEEIKEKLLKEYGENGEEIVPVIPI-SALTGDGI 175 (188)
T ss_dssp HHHHHHHHHHHHT--T-SEEEEEETCTS--------S--HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEE-BTTTTBTH
T ss_pred ccccccccccccc--ccceEEeeeeccc--------h--hhhHHHHHHHHHHHhccccccCccccceEEEE-ecCCCCCH
Confidence 4445555666665 5677888765532 1 455566777777 6778888887 23333322 44455667
Q ss_pred HHHHHHHHHHh
Q 011487 268 ALLFKQWRTSI 278 (484)
Q Consensus 268 ~~flk~Lr~~l 278 (484)
..|++.|.+.+
T Consensus 176 ~~Ll~~l~~~~ 186 (188)
T PF00009_consen 176 DELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 77777776655
No 274
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=21.05 E-value=4.7e+02 Score=23.61 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCH-HHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHH
Q 011487 188 DHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTK-ETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSN 266 (484)
Q Consensus 188 ~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~-~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~ 266 (484)
.+..+...++.+|+. |+++ |..-. .....+. +..+.|++.+-+. .+---+-||+|..........
T Consensus 36 ~D~~~~~~~~~a~~a--Gl~~----G~Yhy-----~~~~~~a~~qa~~fi~~~~~~---~~~~~~~lDvE~~~~~~~~~~ 101 (186)
T cd00599 36 VDPKFATNRARARAA--GLLV----GAYHF-----ARPCANAEAQADNFVNTVPRD---PGSLPLVLDVEDTGGGCSAAA 101 (186)
T ss_pred cChHHHHHHHHHHHC--CCce----EEEEE-----ecCCCCHHHHHHHHHHHccCc---CCCCCeEEEEecCCCCCCHHH
Confidence 346677777787776 5543 22111 1112222 2334455544443 144567889997643223455
Q ss_pred HHHHHHHHHHHhHHh
Q 011487 267 LALLFKQWRTSINQE 281 (484)
Q Consensus 267 ~~~flk~Lr~~l~~~ 281 (484)
..++++++.+++++.
T Consensus 102 ~~~~~~~f~~~~~~~ 116 (186)
T cd00599 102 LAAWLNAFLNEVEAL 116 (186)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666665544
No 275
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=20.92 E-value=2.8e+02 Score=25.65 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCC---eeEEeecCCCChhhHHH
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFD---GVDLDWEFPANDQDMSN 266 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfD---GIDIDwE~p~~~~~~~~ 266 (484)
..+.+.++.+++. |+++ |.. .|.....+....++-++..++.++.+++. =+-||+|.... ..+..
T Consensus 38 ~~~~~n~~~A~~a--Gl~v----G~Y-----hf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~-~~~~~ 105 (196)
T cd06415 38 PKASAQVSSAIAN--GKMT----GGY-----HFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSG-NSKAA 105 (196)
T ss_pred ccHHHHHHHHHHC--CCee----EEE-----EEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCC-CCHHH
Confidence 4566666666665 5533 221 12221222222333333344555666553 36899997522 12333
Q ss_pred HHHHHHHHHHHhH
Q 011487 267 LALLFKQWRTSIN 279 (484)
Q Consensus 267 ~~~flk~Lr~~l~ 279 (484)
....++++.++++
T Consensus 106 ~~~~~~~f~~~v~ 118 (196)
T cd06415 106 NTSAILAFMDTIK 118 (196)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 276
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.87 E-value=4.5e+02 Score=26.51 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhC--CCeeEEeecCCCChhhHHHHHHH
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYG--FDGVDLDWEFPANDQDMSNLALL 270 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~yg--fDGIDIDwE~p~~~~~~~~~~~f 270 (484)
....+.+|+..|++|+++.=-+-. .. .+|+.+.+-|..+. +.| +|||-|---...... ...+..+
T Consensus 159 ~~aF~~A~~~~P~a~L~~NDy~~~----------~~-~k~~~~~~lv~~l~-~~gvpIdgIG~Q~H~~~~~~-~~~i~~~ 225 (320)
T PF00331_consen 159 ADAFRAAREADPNAKLFYNDYNIE----------SP-AKRDAYLNLVKDLK-ARGVPIDGIGLQSHFDAGYP-PEQIWNA 225 (320)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSTT----------ST-HHHHHHHHHHHHHH-HTTHCS-EEEEEEEEETTSS-HHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEecccccc----------ch-HHHHHHHHHHHHHH-hCCCccceechhhccCCCCC-HHHHHHH
Confidence 334468888889999999533321 22 66777776555554 444 799888664322222 4555555
Q ss_pred HHHH
Q 011487 271 FKQW 274 (484)
Q Consensus 271 lk~L 274 (484)
|+++
T Consensus 226 l~~~ 229 (320)
T PF00331_consen 226 LDRF 229 (320)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 277
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=20.82 E-value=5.8e+02 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHh
Q 011487 240 IEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSI 278 (484)
Q Consensus 240 ~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l 278 (484)
++++++.|+|+|.|.-+.+.. .....++++++|+.+
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~ 112 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV 112 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc
Confidence 678889999999999886421 233445666666654
No 278
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=20.79 E-value=2e+02 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.431 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCC
Q 011487 190 AKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPA 259 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~ 259 (484)
..+.++++.+++. |+++|+-|.. +.|.++--+.. -++..++.|++||-+|+-..+
T Consensus 49 ~~~~ell~~Ankl--g~~vivDvnP-----sil~~l~~S~~--------~l~~f~e~G~~glRlD~gfS~ 103 (360)
T COG3589 49 HRFKELLKEANKL--GLRVIVDVNP-----SILKELNISLD--------NLSRFQELGVDGLRLDYGFSG 103 (360)
T ss_pred HHHHHHHHHHHhc--CcEEEEEcCH-----HHHhhcCCChH--------HHHHHHHhhhhheeecccCCH
Confidence 3455666555554 9999999854 34444332322 467788899999999997753
No 279
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=20.77 E-value=7.6e+02 Score=23.75 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCcEEEEEECCCCCCch--hhhhhcCCHHHHHHHHH---------------HHHHHHHHhCCCeeEEee
Q 011487 193 LELVGTLRVQNSHIKILLSIGGGGSDPN--VFSKMASTKETRAIFIN---------------STIEIARKYGFDGVDLDW 255 (484)
Q Consensus 193 ~~~i~~lk~~n~~~KvllSIGG~~~~~~--~f~~l~~~~~~r~~fi~---------------si~~~l~~ygfDGIDIDw 255 (484)
..+++.+++. ++|-++++||-..+.. ...-..++++.++.+-+ .+.......|++++.|=-
T Consensus 97 ~~il~~~~~~--gv~~Ii~Lgg~~~~~~~~~v~~~at~~~~~~~l~~~~~~~~~g~i~G~~g~ll~~a~~~gi~~i~Ll~ 174 (238)
T TIGR00161 97 NAIVEWMVRN--NSRELISFNGMVVREKSQPVFGAANSQELIERLKDLIEIFPFGNLNGISGTLLTRCAVNDIPAICLLA 174 (238)
T ss_pred HHHHHHHHHc--CCCeEEEEeCccCCCCCCcEEEEECCHHHHHHHHHhcCcCCCCEEechhHHHHHHHHHcCCCEEEEEE
Confidence 4555666666 7999999999654211 11112344555555433 345566788999999988
Q ss_pred cCCCChhhHHHHHHHHHHHH
Q 011487 256 EFPANDQDMSNLALLFKQWR 275 (484)
Q Consensus 256 E~p~~~~~~~~~~~flk~Lr 275 (484)
|-.+...|-..-..+|+.|.
T Consensus 175 et~~~~PDP~AA~~ll~~l~ 194 (238)
T TIGR00161 175 ETLGPYPDPRAAASLVEVLN 194 (238)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 75543333333334444433
No 280
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=20.77 E-value=3.2e+02 Score=29.45 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=48.4
Q ss_pred EEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhh---cCCHHHHHHHHHHHHHHH
Q 011487 167 HIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKM---ASTKETRAIFINSTIEIA 243 (484)
Q Consensus 167 hIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l---~~~~~~r~~fi~si~~~l 243 (484)
-..++|..+-|+|..-.+....-+-+.++++.|+++ |++.++.+-.|.. +..+..- ..+++..+.|++=..-++
T Consensus 87 RfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~--GI~P~vTL~H~dl-P~~L~~~yGGW~n~~~~~~F~~Ya~~~f 163 (477)
T PRK15014 87 RTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKY--NIEPVITLSHFEM-PLHLVQQYGSWTNRKVVDFFVRFAEVVF 163 (477)
T ss_pred EecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeeCCCC-CHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 345577777776521111211124467888999988 8999999966654 4433221 335666777777777777
Q ss_pred HHhC
Q 011487 244 RKYG 247 (484)
Q Consensus 244 ~~yg 247 (484)
+++|
T Consensus 164 ~~fg 167 (477)
T PRK15014 164 ERYK 167 (477)
T ss_pred HHhc
Confidence 7765
No 281
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=20.58 E-value=6.2e+02 Score=27.36 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 011487 230 ETRAIFINSTI 240 (484)
Q Consensus 230 ~~r~~fi~si~ 240 (484)
+.|..+..+|.
T Consensus 493 dgR~~LmaqIR 503 (569)
T KOG3671|consen 493 DGRDALMAQIR 503 (569)
T ss_pred ccHHHHHHHHH
Confidence 44555555544
No 282
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.46 E-value=7.4e+02 Score=26.96 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhCCCcEEE--EEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHH
Q 011487 190 AKLLELVGTLRVQNSHIKIL--LSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNL 267 (484)
Q Consensus 190 ~~~~~~i~~lk~~n~~~Kvl--lSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~ 267 (484)
..+.+.++.+|+.+..+.+| +|=||-- ...+....++++++++|+.-|-|..-.-+.+......
T Consensus 96 ~~~~~~~~~~~~~~~~lHl~GL~SdggVH--------------sh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~ 161 (507)
T PRK05434 96 PALLDAIDKAKKNGGALHLMGLLSDGGVH--------------SHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSA 161 (507)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccCCCcc--------------cHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhH
Confidence 45677777777765455555 4545532 2355667789999999987777776544444445566
Q ss_pred HHHHHHHHHHhHHh
Q 011487 268 ALLFKQWRTSINQE 281 (484)
Q Consensus 268 ~~flk~Lr~~l~~~ 281 (484)
..+|++|.+.+.+.
T Consensus 162 ~~~i~~l~~~~~~~ 175 (507)
T PRK05434 162 LGYLEELEAKLAEL 175 (507)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888877653
No 283
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.41 E-value=3.3e+02 Score=30.74 Aligned_cols=88 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred ccEEEEeeeeeeCCC-CEEEEcCcChHHHHHHHHHHHhhCCCcEEEEEECCC-CCCchh---------------------
Q 011487 165 FTHIYYAFLLPEPKT-FKLNVTLLDHAKLLELVGTLRVQNSHIKILLSIGGG-GSDPNV--------------------- 221 (484)
Q Consensus 165 ~ThIi~af~~i~~~g-g~l~~~~~~~~~~~~~i~~lk~~n~~~KvllSIGG~-~~~~~~--------------------- 221 (484)
|+.|++...-.+... ...++....-...+++++.||++ |+|+++.|--. ..+...
T Consensus 299 ~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~--G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~ 376 (665)
T PRK10658 299 LHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAK--GLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQW 376 (665)
T ss_pred ceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHC--CCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeee
Confidence 566665543333211 13444332223346788999988 89999876321 000111
Q ss_pred --------hhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 222 --------FSKMASTKETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 222 --------f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
|-+ ..+++.|+=+.+.+.++ .+.|+||+-.|+-
T Consensus 377 ~~W~g~~~~~D-ftnp~ar~W~~~~~~~l-~d~Gvdgfw~D~g 417 (665)
T PRK10658 377 DKWQPGMAIVD-FTNPDACKWYADKLKGL-LDMGVDCFKTDFG 417 (665)
T ss_pred eecCCCceeec-CCCHHHHHHHHHHHHHH-HhcCCcEEEecCC
Confidence 122 35678888887777664 4689999999973
No 284
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.41 E-value=3.8e+02 Score=24.04 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEE-ECCCC---CCchhhhhhcCCHHHHHHHHHHHHHHHHHh-CCCeeEE
Q 011487 189 HAKLLELVGTLRVQNSHIKILLS-IGGGG---SDPNVFSKMASTKETRAIFINSTIEIARKY-GFDGVDL 253 (484)
Q Consensus 189 ~~~~~~~i~~lk~~n~~~KvllS-IGG~~---~~~~~f~~l~~~~~~r~~fi~si~~~l~~y-gfDGIDI 253 (484)
...+.++++.+++++++.+|++. +--.. .....+...+ .+..+.+-+.+.++.+++ ++.=+|+
T Consensus 90 ~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~~~~~~--~~~~~~~n~~~~~~a~~~~~~~~id~ 157 (191)
T cd01836 90 RKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQPLRWLL--GRRARLLNRALERLASEAPRVTLLPA 157 (191)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHHHHHHH--HHHHHHHHHHHHHHHhcCCCeEEEec
Confidence 46778899999998899999863 21111 0011111111 234456677777788887 5443333
No 285
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=20.33 E-value=2.7e+02 Score=28.14 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeec
Q 011487 192 LLELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWE 256 (484)
Q Consensus 192 ~~~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE 256 (484)
++++++.++++.++++++.-.||. ..+.+.+.++|.|++.+||.
T Consensus 217 ~k~i~~~i~~~~~~~~ilh~cg~~---------------------~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 217 LKRIIEEVKKRLPGVPVILFAKGA---------------------GGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCC---------------------HHHHHHHHhcCCCEEEeCCC
Confidence 355666777764456666644432 13577888889999999987
No 286
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.23 E-value=4.2e+02 Score=27.23 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCcEEEEEECCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHHhCCCeeEEeecCCCChhhHHHHHHHHHH
Q 011487 194 ELVGTLRVQNSHIKILLSIGGGGSDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQ 273 (484)
Q Consensus 194 ~~i~~lk~~n~~~KvllSIGG~~~~~~~f~~l~~~~~~r~~fi~si~~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~ 273 (484)
+.++.+++. |++ -++||=++++.+....+ +-....+. +...++.+++.||+.|.+|+=+-...+..+.+.+-++.
T Consensus 109 e~l~~l~~~--G~~-rvslGvQS~~~~~L~~l-~R~~s~~~-~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~ 183 (375)
T PRK05628 109 EFFAALRAA--GFT-RVSLGMQSAAPHVLAVL-DRTHTPGR-AVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDA 183 (375)
T ss_pred HHHHHHHHc--CCC-EEEEecccCCHHHHHHc-CCCCCHHH-HHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHH
Confidence 344556654 443 67777777644444333 22223333 44567788999999888888652223334444444443
Q ss_pred H
Q 011487 274 W 274 (484)
Q Consensus 274 L 274 (484)
+
T Consensus 184 ~ 184 (375)
T PRK05628 184 A 184 (375)
T ss_pred H
Confidence 3
No 287
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=20.21 E-value=2.9e+02 Score=31.13 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.6
Q ss_pred ccCCCCCCC
Q 011487 65 IAGPGMDPY 73 (484)
Q Consensus 65 ~~~~~~~~~ 73 (484)
+-||+--+.
T Consensus 563 ~~~~~~~~~ 571 (670)
T PLN02217 563 AGNPGSTNS 571 (670)
T ss_pred cCCCCcccc
Confidence 344443333
No 288
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.18 E-value=4.1e+02 Score=23.55 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=43.6
Q ss_pred CCccEEEEeeeeeeCCCCEEEEcCcChHHHHHHHHHHHhhCCCcEEEE-EECCCCCCchhhhhhcCCHHHHHHHHHHHHH
Q 011487 163 SYFTHIYYAFLLPEPKTFKLNVTLLDHAKLLELVGTLRVQNSHIKILL-SIGGGGSDPNVFSKMASTKETRAIFINSTIE 241 (484)
Q Consensus 163 ~~~ThIi~af~~i~~~gg~l~~~~~~~~~~~~~i~~lk~~n~~~Kvll-SIGG~~~~~~~f~~l~~~~~~r~~fi~si~~ 241 (484)
.+-++|++.+-.-|....... .......+..+++.+|. ++.+|++ ++.-... ...+.. .....++++.+.+.+
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~-~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~-~~~~~~--~~~~~~~~~n~~l~~ 139 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTD-PDTYRADLEEAVRRLRA--AGARVVVFTIPDPAV-LEPFRR--RVRARLAAYNAVIRA 139 (185)
T ss_pred cCCCEEEEeccccccccCCCC-HHHHHHHHHHHHHHHHh--CCCEEEEecCCCccc-cchhHH--HHHHHHHHHHHHHHH
Confidence 366777776543221110010 11124566778888873 4777775 3221100 111111 112346778888888
Q ss_pred HHHHhCCCeeEE
Q 011487 242 IARKYGFDGVDL 253 (484)
Q Consensus 242 ~l~~ygfDGIDI 253 (484)
+.+++|+.-+|+
T Consensus 140 ~a~~~~v~~vd~ 151 (185)
T cd01832 140 VAARYGAVHVDL 151 (185)
T ss_pred HHHHcCCEEEec
Confidence 888888655554
No 289
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.15 E-value=1.8e+02 Score=29.79 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEEecCCCCcchHHH
Q 011487 442 DDVLSIKLKVQFAKSKGLGGYFFWAIGQDKDWTLSK 477 (484)
Q Consensus 442 dd~~Sl~~K~~~ak~~gLgGv~iW~l~~DD~~~ll~ 477 (484)
.|++.++..+++|+++|+-|+.+|---.+ ...||+
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~-gk~lLe 89 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFN-GKRLLE 89 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecC-CchHHH
Confidence 58999999999999999999999987774 445554
No 290
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.13 E-value=3e+02 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCeeEEeecCC
Q 011487 237 NSTIEIARKYGFDGVDLDWEFP 258 (484)
Q Consensus 237 ~si~~~l~~ygfDGIDIDwE~p 258 (484)
...++.+.++|.|-|.+..|..
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~ 111 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESL 111 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSS
T ss_pred HHHHHHHHhcCccEEecccccC
Confidence 6678889999999999999976
No 291
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=20.04 E-value=4.6e+02 Score=24.34 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred HHHHHhCCCeeEEeecCCCChhhHHHHHHHHHHHHHHhHHhhhhcCCCCeEEEEEecccccccccCCCCCcChhhhhccC
Q 011487 241 EIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAVYFASRFTIYGGPRGYPIEAINKYM 320 (484)
Q Consensus 241 ~~l~~ygfDGIDIDwE~p~~~~~~~~~~~flk~Lr~~l~~~~~~~~~~~~~Lsvav~~~~~~~~~~~~~~~d~~~l~~~v 320 (484)
+.+.+.|.|||-+..+.. +....+++.+|+ .++.+.+.+.... ..-..+.+...+
T Consensus 78 ~~~~~~g~d~v~vh~~~~------~~~~~~~~~~~~-----------~~~~~g~~~~~~t--------~~e~~~~~~~~~ 132 (220)
T PRK05581 78 PDFAKAGADIITFHVEAS------EHIHRLLQLIKS-----------AGIKAGLVLNPAT--------PLEPLEDVLDLL 132 (220)
T ss_pred HHHHHcCCCEEEEeeccc------hhHHHHHHHHHH-----------cCCEEEEEECCCC--------CHHHHHHHHhhC
Confidence 444578999988887632 122334444444 2344444442111 111245666779
Q ss_pred ceEEeeecc
Q 011487 321 NWVSPMCFD 329 (484)
Q Consensus 321 D~v~lm~YD 329 (484)
||+.+|+++
T Consensus 133 d~i~~~~~~ 141 (220)
T PRK05581 133 DLVLLMSVN 141 (220)
T ss_pred CEEEEEEEC
Confidence 999999976
Done!