BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011488
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 6 DYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ YS +VL ME
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 125
Query: 337 TILGKLEWTLTVPTYYVFLVR-FIKASIPDQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL + F+ + +E+ FL EL ++ D L + PS++A
Sbjct: 126 LVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIA 185
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 186 GAAFHLALYTVTGQ-SWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKH 244
Query: 455 TQRGSVSLLPPAKSL 469
++ SVSLL P ++L
Sbjct: 245 SKYHSVSLLNPPETL 259
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 3 DYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ YS +VL ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 122
Query: 337 TILGKLEWTLTVPTYYVFLVR-FIKASIPDQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL + F+ + +E+ FL EL ++ D L + PS++A
Sbjct: 123 LVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIA 182
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 183 GAAFHLALYTVTGQ-SWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKH 241
Query: 455 TQRGSVSLLPPAKSL 469
++ SVSLL P ++L
Sbjct: 242 SKYHSVSLLNPPETL 256
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 3 DYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ YS +VL ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 122
Query: 337 TILGKLEWTLTVPTYYVFLVR-FIKASIPDQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL + F+ + +E+ FL EL ++ D L + PS++A
Sbjct: 123 LVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIA 182
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 183 GAAFHLALYTVTGQ-SWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKH 241
Query: 455 TQRGSVSLLPPAKSL 469
++ SVSLL P ++L
Sbjct: 242 SKYHSVSLLNPPETL 256
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 187 AAAFHLALYTVTGQ-SWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 10 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 69
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 70 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 129
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 130 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 189
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 190 GAAFHLALYTVTGQ-SWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 248
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 249 SKYHGVSLLNPPETL 263
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVT-GQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVT-GQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 124
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 125 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 184
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 185 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 243
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 244 SKYHGVSLLNPPETL 258
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 6 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 125
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 126 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 185
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 186 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 244
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 245 SKYHGVSLLNPPETL 259
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 3 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 122
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 123 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 182
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 183 GAAFHLALYTVTGQ-SWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 241
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 242 SKYHGVSLLNPPETL 256
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 5 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 124
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 125 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 184
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 185 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 243
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 244 SKYHGVSLLNPPETL 258
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 4 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 63
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 64 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 123
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 124 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 183
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 184 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 242
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 243 SKYHGVSLLNPPETL 257
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 1 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 180
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 181 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 239
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 240 SKYHGVSLLNPPETL 254
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVT-GQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVTGQ-SWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVTGQ-SWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L C L + +A ++ Q + +KY
Sbjct: 187 AAAFHLALYTVTGQ-SWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 3 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 122
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 123 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 182
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
+A + A T+ +W ++L TG++ L C L + KA ++ Q + +KY
Sbjct: 183 GAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 241
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 242 SKYHGVSLLNPPETL 256
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ C L + KA ++ Q + +KY
Sbjct: 187 AAAFHLALYTVT-GQSWPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 152/255 (59%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
+Y EDI+ + + +E + +P Y+ Q +IT MRAILVDWL++V +E++L ETL+L +
Sbjct: 7 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
N IDRFLS V R +LQLVG AML+ASK+EEI+ PEV + V I D+ Y+ +VL ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 337 TILGKLEWTLTVPTYYVFLVRFIKASIP-DQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
+L L + L PT FL ++ P + +E+ FL EL ++ D L + PS++A
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 186
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
A+A + A T+ +W ++L TG++ L L + KA ++ Q + +KY
Sbjct: 187 AAAFHLALYTVT-GQSWPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQSIREKYKN 245
Query: 455 TQRGSVSLLPPAKSL 469
++ VSLL P ++L
Sbjct: 246 SKYHGVSLLNPPETL 260
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 218 EYVEDIYKFYKLVENES--RPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLT 275
EYV+DIY + + +E E RP Y+ + E+T MRAIL+DWL+ V +F L QET+Y+T
Sbjct: 3 EYVKDIYAYLRQLEEEQAVRP-KYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMT 60
Query: 276 INIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAME 335
++IIDRF+ V ++ LQLVG+ AM IASKYEE++ PE+ D + DN Y+ ++ ME
Sbjct: 61 VSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 120
Query: 336 KTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAA 395
IL L + L P FL R K D + +L EL M+ YD + F PS +AA
Sbjct: 121 MKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAA 180
Query: 396 SAVYAARCTLNRSPAWTDTLRFHTGFSETQLM----DCARLLVYFHSKASENRLQVVHKK 451
A A L+ WT TL+ + ++E L+ A+ +V + +++ V K
Sbjct: 181 GAFCLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKH--MTVKNK 237
Query: 452 YARTQRGSVSLLPPAKSLLSGD 473
YA ++ +S LP S L D
Sbjct: 238 YATSKHAKISTLPQLNSALVQD 259
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 142/262 (54%), Gaps = 11/262 (4%)
Query: 218 EYVEDIYKFYKLVE--NESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLT 275
EYV+DIY + + +E RP + E+T MRAIL+DWL+ V +F L QET+Y+T
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLL--GREVTGNMRAILIDWLVQVQMKFRLLQETMYMT 62
Query: 276 INIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAME 335
++IIDRF+ V ++ LQLVG+ AM IASKYEE++ PE+ D + DN Y+ ++ ME
Sbjct: 63 VSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122
Query: 336 KTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAA 395
IL L + L P FL R K D + +L EL M+ YD + F PS +AA
Sbjct: 123 MKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAA 182
Query: 396 SAVYAARCTLNRSPAWTDTLRFHTGFSETQLM----DCARLLVYFHSKASENRLQVVHKK 451
A A L+ WT TL+ + ++E L+ A+ +V + +++ V K
Sbjct: 183 GAFSLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKH--MTVKNK 239
Query: 452 YARTQRGSVSLLPPAKSLLSGD 473
YA ++ +S LP S L D
Sbjct: 240 YATSKHAKISTLPQLNSALVQD 261
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 113/214 (52%), Gaps = 20/214 (9%)
Query: 235 RPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKV-VSRREL 293
R ++ + +MRAIL+DWL++V + ++L +ET YL + DR+++ + V + L
Sbjct: 34 RDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLL 93
Query: 294 QLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYV 353
QL+G+ ++ IA+K EEI+ P+++ + D A S E+L ME I+ L+W L+ T
Sbjct: 94 QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVS 153
Query: 354 FLVRFIKAS---------IPD--QDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAAR 402
+L +++ + +P Q + + L +L ++ D L F ++AASA+Y
Sbjct: 154 WLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS 213
Query: 403 CTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYF 436
++ ++ +G+ + +C + +V F
Sbjct: 214 S--------SELMQKVSGYQWCDIENCVKWMVPF 239
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 238 SYIHT-QTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLV 296
SY Q EI MR +L W+++V +E +E L +N +DR+LS + +LQL+
Sbjct: 57 SYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLL 116
Query: 297 GMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLV 356
G ML+ASK E + L D+A S ++ E +LGKL+W L + FL
Sbjct: 117 GAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLA 176
Query: 357 RFI-KASIPDQDMENTV-----YFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPA 410
+ + S+P +D + V FLA L Y M+ PSM+A ++ AA L
Sbjct: 177 FILHRLSLP-RDRQALVKKHAQTFLA-LCATDYTFAMYPPSMIATGSIGAAVQGLGACSM 234
Query: 411 WTDTL-RFHTGFSETQLMDCAR 431
D L G + T++ DC R
Sbjct: 235 SGDELTELLAGITGTEV-DCLR 255
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 243 QTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAML 302
Q E+ MR I+ W+++V +E + +E L +N +DRFLS++ V + LQL+G M
Sbjct: 35 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 94
Query: 303 IASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFI 359
+ASK +E L DN+ E+L ME ++ KL+W L T + F+ F+
Sbjct: 95 VASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL 151
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%)
Query: 243 QTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAML 302
Q E+ MR I+ W+++V +E + +E L +N +DRFLS++ V + LQL+G M
Sbjct: 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108
Query: 303 IASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFI 359
+ASK +E L DN+ E+L ME ++ KL+W L T + F+ F+
Sbjct: 109 VASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL 165
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 238 SYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVG 297
S QTE+T R IL+ W+ + + FEL + L+++I+DR+L K +++ LQ +G
Sbjct: 39 SLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIG 98
Query: 298 MGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVR 357
+LI SK + V+ L ++ + +++ E++ EK IL L+W FL+
Sbjct: 99 AACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIP 158
Query: 358 FIKASIPDQDMENTVYFLAEL----GMMHYDTLMFSPSMVAASAV 398
A +D+ +Y A ++ + + SP ++ A +
Sbjct: 159 LCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGL 203
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 238 SYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVG 297
S QTE+T R IL+ W+ + + FEL + L+++I+DR+L K +++ LQ +G
Sbjct: 18 SLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIG 77
Query: 298 MGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVR 357
+LI SK + V+ L ++ + +++ E++ EK IL L+W FL+
Sbjct: 78 AACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIP 137
Query: 358 FIKASIPDQDMENTVYFLAEL----GMMHYDTLMFSPSMVAASAV 398
A +D+ +Y A ++ + + SP ++ A +
Sbjct: 138 LCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGL 182
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 226 FYKLVENESRPCS----YIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDR 281
FY ++E E R + + Q +T MR +L W+ V QE+ L + L +N++DR
Sbjct: 22 FYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81
Query: 282 FLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGK 341
L +K VS+ Q G +L+ASK + + L A +++S E++ EK +L K
Sbjct: 82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEK 141
Query: 342 LEW 344
L W
Sbjct: 142 LAW 144
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIA 304
E++ R +A + L D+ Q +SQ T+ I + RF ++ +R V A+ +A
Sbjct: 34 ELSYRQQA--ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLA 91
Query: 305 SKYEEIWAPEVNDLVRIADNAYSHPE-----------------VLAMEKTILGKLEWTLT 347
+K EE ++ ++++A HP+ ++ +E IL L + LT
Sbjct: 92 AKVEEQ-PKKLEHVIKVAHTCL-HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT 149
Query: 348 VPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDT--LMFSPSMVAASAVYAA 401
+ + +V+ + +D+ T YF+A +H T L ++P +VA ++ A
Sbjct: 150 IDHPHTHVVKCTQLVRASKDLAQTSYFMA-TNSLHLTTFSLQYTPPVVACVCIHLA 204
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIA 304
E++ R +A + L D+ Q +SQ T+ I + RF ++ +R V A+ +A
Sbjct: 31 ELSYRQQA--ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFHRNSVAPAALFLA 88
Query: 305 SKYEEIWAPEVNDLVRIADNAYSHPE-----------------VLAMEKTILGKLEWTLT 347
+K EE ++ ++++A HP+ ++ +E IL L + LT
Sbjct: 89 AKVEEQ-PKKLEHVIKVAHTCL-HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT 146
Query: 348 VPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDT--LMFSPSMVAASAVYAA 401
+ + +V+ + +D+ T YF+A +H T L ++P +VA ++ A
Sbjct: 147 IDHPHTHVVKCTQLVRASKDLAQTSYFMAT-NSLHLTTFSLQYTPPVVACVCIHLA 201
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIA 304
E++ R +A + L D+ Q +SQ T+ I + RF ++ ++ V A+ +A
Sbjct: 34 ELSYRQQA--ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLA 91
Query: 305 SKYEEIWAPEVNDLVRIADNAYSHPE-----------------VLAMEKTILGKLEWTLT 347
+K EE ++ ++++A HP+ ++ +E IL L + LT
Sbjct: 92 AKVEEQ-PKKLEHVIKVAHTCL-HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT 149
Query: 348 VPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDT--LMFSPSMVAASAVYAA 401
+ + +V+ + +D+ T YF+A +H T L ++P +VA ++ A
Sbjct: 150 IDHPHTHVVKCTQLVRASKDLAQTSYFMAT-NSLHLTTFSLQYTPPVVACVCIHLA 204
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIA 304
E++ R +A + L D+ Q +SQ T+ I + RF ++ ++ V A+ +A
Sbjct: 34 ELSYRQQA--ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLA 91
Query: 305 SKYEEIWAPEVNDLVRIADNAYSHPE-----------------VLAMEKTILGKLEWTLT 347
+K EE ++ ++++A HP+ ++ +E IL L + LT
Sbjct: 92 AKVEEQ-PKKLEHVIKVAHTCL-HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT 149
Query: 348 VPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDT--LMFSPSMVAASAVYAA 401
+ + +V+ + +D+ T YF+A +H T L ++P +VA ++ A
Sbjct: 150 IDHPHTHVVKCTQLVRASKDLAQTSYFMAT-NSLHLTTFSLQYTPPVVACVCIHLA 204
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIA 304
E++ R +A + L D+ Q +SQ T+ I + RF ++ +R V A+ +A
Sbjct: 35 ELSYRQQA--ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLA 92
Query: 305 SKYEEIWAPEVNDLVRIADNAYSHPE-----------------VLAMEKTILGKLEWTLT 347
+K E ++ ++++A HP+ ++ +E IL L + LT
Sbjct: 93 AKVEGQ-PKKLEHVIKVAHTCL-HPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELT 150
Query: 348 VPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDT--LMFSPSMVAASAVYAA 401
+ + +V+ + +D+ T YF+A +H T L ++P +VA ++ A
Sbjct: 151 IDHPHTHVVKCTQLVRASKDLAQTSYFMAT-NSLHLTTFSLQYTPPVVACVCIHLA 205
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 35/201 (17%)
Query: 232 NESRPCSYI------HTQTEI------TE-RMRAILVDWLIDVHQEFELSQETLYLTINI 278
+ ++PC Y HT +++ TE R R ++ DV L +TL I
Sbjct: 9 DHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIY 68
Query: 279 IDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYS----------- 327
RF + + G + +A K EE + D+++ A + +
Sbjct: 69 FHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTARSLLNDVQFGQFGDDP 127
Query: 328 HPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYD--- 384
EV+ +E+ +L +++ L V Y FL+++ K D+ N + L ++ +
Sbjct: 128 KEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK---NKIQKLVQMAWTFVNDSL 184
Query: 385 ----TLMFSPSMVAASAVYAA 401
+L + P ++A + +Y A
Sbjct: 185 CTTLSLQWEPEIIAVAVMYLA 205
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 354 FLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTD 413
FL+ F+K S D+ FLAE Y TL P+ + S VY + +R D
Sbjct: 43 FLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQDR-----D 97
Query: 414 TLRFHTGFSETQLMD 428
T F G T L D
Sbjct: 98 TQYFGPGTRLTVLED 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,777,765
Number of Sequences: 62578
Number of extensions: 367893
Number of successful extensions: 875
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 37
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)