Query 011488
Match_columns 484
No_of_seqs 329 out of 1777
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 9.7E-57 3.3E-61 443.6 27.7 254 216-470 3-259 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 9.8E-56 3.4E-60 438.9 22.0 256 215-472 2-260 (269)
3 1w98_B Cyclin E, G1/S-specific 100.0 1E-49 3.5E-54 398.7 22.1 255 211-474 9-279 (283)
4 1g3n_C V-cyclin; cyclin-depend 100.0 2.4E-49 8.3E-54 390.1 24.0 235 209-446 10-255 (257)
5 2f2c_A Cyclin homolog, V-cycli 100.0 1E-48 3.6E-53 385.0 25.4 232 208-442 10-251 (254)
6 3g33_B CCND3 protein; Ser/Thr 100.0 3E-47 1E-51 385.1 26.1 227 212-440 32-268 (306)
7 1f5q_B Gamma herpesvirus cycli 100.0 3.6E-47 1.2E-51 375.1 22.6 224 210-442 14-245 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 4E-45 1.4E-49 362.6 23.5 221 220-440 24-258 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 4.6E-37 1.6E-41 301.9 22.6 207 243-453 23-253 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 1.7E-36 5.7E-41 303.4 23.1 218 245-472 37-273 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 2.1E-36 7.3E-41 296.8 18.0 199 241-440 31-252 (258)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 2.5E-35 8.5E-40 304.0 14.1 204 243-450 30-257 (358)
13 1zp2_A RNA polymerase II holoe 100.0 1.8E-34 6.3E-39 280.2 19.0 187 251-441 28-222 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 8.1E-33 2.8E-37 281.5 20.0 206 246-452 52-277 (323)
15 1c9b_A General transcription f 100.0 3.9E-27 1.3E-31 224.2 21.4 182 251-436 5-186 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 4.6E-23 1.6E-27 194.8 22.4 183 251-437 9-193 (200)
17 3k7a_M Transcription initiatio 99.8 2.3E-19 7.7E-24 184.0 7.1 182 252-437 127-320 (345)
18 4bbr_M Transcription initiatio 99.4 5E-13 1.7E-17 137.1 10.2 182 252-437 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 3.8E-06 1.3E-10 83.9 12.1 104 254-360 77-183 (293)
20 1ais_B TFB TFIIB, protein (tra 96.7 0.0083 2.8E-07 55.8 10.5 148 179-346 50-197 (200)
21 1c9b_A General transcription f 95.3 0.13 4.3E-06 48.0 11.2 86 351-437 8-93 (207)
22 1zp2_A RNA polymerase II holoe 91.3 1.5 5.1E-05 41.5 11.3 85 352-437 32-125 (235)
23 2ivx_A Cyclin-T2; transcriptio 88.8 1.4 4.7E-05 42.2 8.8 87 256-342 148-238 (257)
24 4bbr_M Transcription initiatio 88.4 2.3 8E-05 43.0 10.5 87 350-437 128-214 (345)
25 2b9r_A Human cyclin B1; cell c 88.2 3.4 0.00012 40.0 11.2 84 353-436 43-128 (269)
26 2w96_A G1/S-specific cyclin-D1 87.7 4.5 0.00015 39.0 11.8 72 365-436 74-147 (271)
27 2i53_A Cyclin K; cell cycle, t 87.3 1.4 4.9E-05 42.0 7.8 88 256-343 153-250 (258)
28 2cch_B Cyclin A2, cyclin-A; co 85.4 3.9 0.00013 39.2 9.8 84 354-437 45-130 (260)
29 2f2c_A Cyclin homolog, V-cycli 85.3 5.4 0.00018 38.1 10.7 84 353-436 57-142 (254)
30 3rgf_B Cyclin-C; protein kinas 84.5 7.2 0.00025 38.0 11.4 84 353-436 48-147 (285)
31 1g3n_C V-cyclin; cyclin-depend 84.4 4.8 0.00016 38.5 10.0 74 363-436 66-141 (257)
32 3g33_B CCND3 protein; Ser/Thr 84.2 6 0.0002 39.2 10.8 73 364-436 87-161 (306)
33 2pk2_A Cyclin-T1, protein TAT; 83.3 1.2 4.2E-05 45.3 5.4 87 256-342 155-245 (358)
34 3k7a_M Transcription initiatio 83.2 0.87 3E-05 46.1 4.2 87 351-438 129-215 (345)
35 1w98_B Cyclin E, G1/S-specific 80.0 10 0.00035 36.9 10.6 73 365-437 67-142 (283)
36 2pmi_B PHO85 cyclin PHO80, ami 78.2 16 0.00053 36.4 11.2 87 349-435 75-164 (293)
37 3h4c_A Transcription factor TF 76.6 15 0.0005 34.9 9.8 88 253-344 14-104 (260)
38 1jkw_A Cyclin H; cell cycle, c 75.1 21 0.00072 35.4 11.4 81 354-435 63-152 (323)
39 1f5q_B Gamma herpesvirus cycli 68.6 37 0.0013 32.5 11.1 71 365-435 66-138 (252)
40 2p1m_A SKP1-like protein 1A; F 35.8 30 0.001 30.7 3.9 54 266-331 92-148 (160)
41 2qdj_A Retinoblastoma-associat 34.6 91 0.0031 30.9 7.6 65 258-323 6-74 (304)
42 2ast_A S-phase kinase-associat 33.2 46 0.0016 29.3 4.7 54 266-331 93-149 (159)
43 3v7d_A Suppressor of kinetocho 29.9 61 0.0021 29.1 5.0 55 265-331 99-156 (169)
44 1fs1_B SKP1, cyclin A/CDK2-ass 26.9 59 0.002 28.1 4.2 54 254-321 79-135 (141)
45 3m03_A ORC6, origin recognitio 25.2 2.9E+02 0.0098 22.7 8.7 78 258-340 6-89 (95)
46 3m03_A ORC6, origin recognitio 20.8 2E+02 0.0068 23.7 6.0 50 388-438 43-92 (95)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=9.7e-57 Score=443.56 Aligned_cols=254 Identities=39% Similarity=0.628 Sum_probs=244.1
Q ss_pred ccccHHHHHHHHHHHHhhcCC-CCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhH
Q 011488 216 GVEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQ 294 (484)
Q Consensus 216 ~~eY~~DIy~~l~~~E~e~~~-~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQ 294 (484)
|.||++|||.||+..|..+.| ++||..|++|++.||.+++|||+++|..|+|+++|+|+||+|||||++...+.+.++|
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq 82 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ 82 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence 789999999999999999887 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCc-hhHHHHH
Q 011488 295 LVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQ-DMENTVY 373 (484)
Q Consensus 295 LvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~-el~~lA~ 373 (484)
|+|+||||||||+||.++|+++||+.++++.|++++|++||+.||++|+|+++.|||++||.+|++....+. ++..+++
T Consensus 83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~ 162 (260)
T 2cch_B 83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM 162 (260)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877554 8899999
Q ss_pred HHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcCccchHHHHHhh
Q 011488 374 FLAELGMMHYD-TLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKY 452 (484)
Q Consensus 374 yL~ELsL~d~~-~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~~s~l~aI~kKY 452 (484)
|+++++++|+. ++.|+||.||+|||++|++.++. +.|...|.+++||++++|.+|++.|..++.....+++++|++||
T Consensus 163 ~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky 241 (260)
T 2cch_B 163 FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241 (260)
T ss_dssp HHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHH
T ss_pred HHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999 99999999999999999999876 68999999999999999999999999999988888999999999
Q ss_pred CCCCCCceeecCCCCCcc
Q 011488 453 ARTQRGSVSLLPPAKSLL 470 (484)
Q Consensus 453 S~~~~~~VA~~pp~~~l~ 470 (484)
++++|+.||.+||++.|.
T Consensus 242 ~~~~~~~vs~~~~~~~~~ 259 (260)
T 2cch_B 242 KNSKYHGVSLLNPPETLN 259 (260)
T ss_dssp TSGGGTTGGGSCCCSCCC
T ss_pred CcccccceeCCCCcccCC
Confidence 999999999999998763
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=9.8e-56 Score=438.87 Aligned_cols=256 Identities=37% Similarity=0.591 Sum_probs=239.4
Q ss_pred cccccHHHHHHHHHHHHhhcCC-CCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchh
Q 011488 215 AGVEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRREL 293 (484)
Q Consensus 215 ~~~eY~~DIy~~l~~~E~e~~~-~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~L 293 (484)
+|.||++|||+||+..|.++.+ ++||..| +|++.||.+++|||+++|.+|+|+++|+|+|++|||||++...+.+.++
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~l 80 (269)
T 2b9r_A 2 LSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKML 80 (269)
T ss_dssp -----CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGH
T ss_pred ChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHh
Confidence 5889999999999999999876 7999988 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHH
Q 011488 294 QLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVY 373 (484)
Q Consensus 294 QLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~ 373 (484)
||+|+||||||||+||..+|+++||++++++.|++++|++||+.||+.|+|+++.|||++||.+|++....+.++..+|+
T Consensus 81 qlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~ 160 (269)
T 2b9r_A 81 QLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAK 160 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877888999999
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcCc--cchHHHHHh
Q 011488 374 FLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASE--NRLQVVHKK 451 (484)
Q Consensus 374 yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~~--s~l~aI~kK 451 (484)
|++++++.++.|+.|+||.||+|||++|+..++.. .|...|.+++||++++|.+|++.|..++..... +++++|++|
T Consensus 161 ~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~K 239 (269)
T 2b9r_A 161 YLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNK 239 (269)
T ss_dssp HHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHH
T ss_pred HHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 99999999999999999999999999999999865 799999999999999999999999998876544 588999999
Q ss_pred hCCCCCCceeecCCCCCccCC
Q 011488 452 YARTQRGSVSLLPPAKSLLSG 472 (484)
Q Consensus 452 YS~~~~~~VA~~pp~~~l~~~ 472 (484)
|++++|+.||.+|++++..-.
T Consensus 240 y~~~~~~~vs~~~~~~~~~~~ 260 (269)
T 2b9r_A 240 YATSKHAKISTLPQLNSALVQ 260 (269)
T ss_dssp TTSGGGTTGGGSSCCSGGGCC
T ss_pred hcchhhCcccCCCCCChHHHH
Confidence 999999999999999876543
No 3
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-49 Score=398.69 Aligned_cols=255 Identities=25% Similarity=0.433 Sum_probs=230.3
Q ss_pred CCCccccccHHHHHHHHHHHHhhcCC-CCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-ccc
Q 011488 211 NNDLAGVEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSV-KVV 288 (484)
Q Consensus 211 ~n~l~~~eY~~DIy~~l~~~E~e~~~-~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~-~~V 288 (484)
.+|..+.||.+|||.+|+..|..+.+ ++||..|++|++.||.+++|||++++.+|+|.++|+|+||+|||||++. ..+
T Consensus 9 ~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 9 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 45777899999999999999998876 6999999999999999999999999999999999999999999999998 689
Q ss_pred ccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCch-
Q 011488 289 SRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQD- 367 (484)
Q Consensus 289 ~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~e- 367 (484)
.+.++||+|+||||||||+||..+|++++|++++++.|+.++|++||+.||++|+|+++.|||++||.+|++....+..
T Consensus 89 ~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 89 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred ----------hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 368 ----------MENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 368 ----------l~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
....+.++++++++|+.|+.|+||.||+||||+|+ |.+.+..++||++++|.+|++.|..++
T Consensus 169 ~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 169 EVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22347789999999999999999999999999983 788999999999999999999999887
Q ss_pred hhc---CccchHHHHHhhCCCCCCceeecCCCCCccCCCC
Q 011488 438 SKA---SENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDR 474 (484)
Q Consensus 438 ~~a---~~s~l~aI~kKYS~~~~~~VA~~pp~~~l~~~~~ 474 (484)
... ..++++. |+||++++++.|+.+++.-.+++..+
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~l~~~~ 279 (283)
T 1w98_B 241 MVIRETGSSKLKH-FRGVADEDAHNIQTHRDSLDLLDKAR 279 (283)
T ss_dssp HHHHHHCCCCCCC-CTTSCGGGGGGBCCCCCHHHHHTC--
T ss_pred HHHHhcChHhhcc-hhccCHHhccCcccCcchHHHHHhhc
Confidence 643 4456664 89999999999999999877776653
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.4e-49 Score=390.09 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=211.8
Q ss_pred CCCCCccccccHHHHHHHHHHHHhhcCC-CCcc-CcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccc
Q 011488 209 DANNDLAGVEYVEDIYKFYKLVENESRP-CSYI-HTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVK 286 (484)
Q Consensus 209 d~~n~l~~~eY~~DIy~~l~~~E~e~~~-~dyl-~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~ 286 (484)
+..||.++.| +||| +|+..|..+.| ++|+ ..|++|++.||.++||||++||.+|+|+++|+|+||+||||||+..
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 4567888877 9999 99999998887 5898 5899999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCc
Q 011488 287 VVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQ 366 (484)
Q Consensus 287 ~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~ 366 (484)
.+.+.++||+|+||||||||+||.++|+++||++++++.|+.++|++||+.||++|+|+++.|||++||.+|++....+.
T Consensus 87 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~ 166 (257)
T 1g3n_C 87 QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGS 166 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred h----hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCC-----CCChHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 367 D----MENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRS-----PAWTDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 367 e----l~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~-----p~W~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
+ +..+++++++++++|+.|+.|+||.||+|||++|++.++.. +.|...|.+++||++++|.+|++.|..++
T Consensus 167 ~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 167 QHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp TTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3 36789999999999999999999999999999999988742 57999999999999999999999999988
Q ss_pred hhcCccchH
Q 011488 438 SKASENRLQ 446 (484)
Q Consensus 438 ~~a~~s~l~ 446 (484)
....+..+.
T Consensus 247 ~~~~~~~l~ 255 (257)
T 1g3n_C 247 SDFDLRILD 255 (257)
T ss_dssp HHCCCCC--
T ss_pred HHCCHHhhc
Confidence 776665554
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1e-48 Score=384.97 Aligned_cols=232 Identities=21% Similarity=0.301 Sum_probs=211.4
Q ss_pred cCCCCCccccccHHHHHHHHHHHHhhcCC-CCccC-cCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 011488 208 KDANNDLAGVEYVEDIYKFYKLVENESRP-CSYIH-TQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSV 285 (484)
Q Consensus 208 ~d~~n~l~~~eY~~DIy~~l~~~E~e~~~-~dyl~-~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~ 285 (484)
.+.+||.++.| +|||. |+..|..+.| ++||. .|+++++.||.++||||+++|.+|+|+++|+|+||+||||||+.
T Consensus 10 ~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~ 86 (254)
T 2f2c_A 10 RAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCK 86 (254)
T ss_dssp BCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTT
T ss_pred CCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHcc
Confidence 45678888888 99999 9999998887 68995 89999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCC
Q 011488 286 KVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPD 365 (484)
Q Consensus 286 ~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d 365 (484)
+.+.+.++||+|+||||||||+||..+|+++||++++++.|++++|++||+.||++|+|+++.|||++||.+|++....+
T Consensus 87 ~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 87 KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred CCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ch----hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCC-C---hHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 366 QD----MENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPA-W---TDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 366 ~e----l~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~-W---~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
.+ +..++.|+++++++|+.|+.|+||.||+|||++|+..++..+. | ...|.+++||++++|.+|++.|..++
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44 3568999999999999999999999999999999998754444 5 78999999999999999999999887
Q ss_pred hhcCc
Q 011488 438 SKASE 442 (484)
Q Consensus 438 ~~a~~ 442 (484)
...++
T Consensus 247 ~~~~~ 251 (254)
T 2f2c_A 247 SLYDL 251 (254)
T ss_dssp HTCCG
T ss_pred HhCCc
Confidence 65443
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=3e-47 Score=385.15 Aligned_cols=227 Identities=26% Similarity=0.342 Sum_probs=206.5
Q ss_pred CCccccccHHHHHHHHHHHHhhcCC-CCccC-cCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccc
Q 011488 212 NDLAGVEYVEDIYKFYKLVENESRP-CSYIH-TQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVS 289 (484)
Q Consensus 212 n~l~~~eY~~DIy~~l~~~E~e~~~-~dyl~-~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~ 289 (484)
|+..+ |.+|||++|+..|..+.| ++|+. .|++|++.||.++||||++||.+|+|.++|+|+||+||||||+...+.
T Consensus 32 dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~ 109 (306)
T 3g33_B 32 DPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR 109 (306)
T ss_dssp -------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC
T ss_pred CCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc
Confidence 44433 999999999999999888 48996 799999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCch--
Q 011488 290 RRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQD-- 367 (484)
Q Consensus 290 ~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~e-- 367 (484)
+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+|++|||++||.+|++....+.+
T Consensus 110 ~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~ 189 (306)
T 3g33_B 110 KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQ 189 (306)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997654322
Q ss_pred --hHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCC----hHHHHhhhCCCHHHHHHHHHHHHHHHhhc
Q 011488 368 --MENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAW----TDTLRFHTGFSETQLMDCARLLVYFHSKA 440 (484)
Q Consensus 368 --l~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W----~~~L~~~tgys~~eL~~c~~~L~~l~~~a 440 (484)
+...++|+++++++++.|+.|+||+||+|||++|++.++..+.| .+.|.+++||++++|.+|+..|..++...
T Consensus 190 ~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 190 ALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999877766 57888999999999999999999988753
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.6e-47 Score=375.06 Aligned_cols=224 Identities=15% Similarity=0.206 Sum_probs=201.6
Q ss_pred CCCCccccccHHHHHHHHHHHHhhcCCCCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccc
Q 011488 210 ANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVS 289 (484)
Q Consensus 210 ~~n~l~~~eY~~DIy~~l~~~E~e~~~~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~ 289 (484)
..||..+. +|||.+|+..|..+.| +..|++|++.||.++||||++||.+|+|.++|+|+||+||||||+...+.
T Consensus 14 ~~dp~l~~---d~i~~~l~~~E~~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~ 87 (252)
T 1f5q_B 14 LLNEEDCR---QMIYRSEREHDARMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRID 87 (252)
T ss_dssp TCCHHHHH---HHHHHHHHHHHHHHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCC
T ss_pred cCCHHHhH---HHHHHHHHHHHHHhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcC
Confidence 34565554 4999999999998887 67789999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCc---
Q 011488 290 RRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQ--- 366 (484)
Q Consensus 290 ~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~--- 366 (484)
+.++||+|+|||||||||||.++|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|++....+.
T Consensus 88 ~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~ 167 (252)
T 1f5q_B 88 RENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDY 167 (252)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred -hhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCC----hHHHHhhhCCCHHHHHHHHHHHHHHHhhcC
Q 011488 367 -DMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAW----TDTLRFHTGFSETQLMDCARLLVYFHSKAS 441 (484)
Q Consensus 367 -el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W----~~~L~~~tgys~~eL~~c~~~L~~l~~~a~ 441 (484)
.+..++.|+++++++|+.|+.|+||+||+||+ ++.++....| .+.|.+++||+.++|.+|++.|..++....
T Consensus 168 ~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~---~~~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~ 244 (252)
T 1f5q_B 168 LNIYNLCRPKIFCALCDGRSAMKRPVLITLACM---HLTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFD 244 (252)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHH---HHHHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhchhhhccCHHHHHHHHH---HHHhccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999999995 4445554445 677899999999999999999998875543
Q ss_pred c
Q 011488 442 E 442 (484)
Q Consensus 442 ~ 442 (484)
+
T Consensus 245 ~ 245 (252)
T 1f5q_B 245 E 245 (252)
T ss_dssp T
T ss_pred h
Confidence 3
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=4e-45 Score=362.58 Aligned_cols=221 Identities=27% Similarity=0.366 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhhcCC-CCcc-CcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHH
Q 011488 220 VEDIYKFYKLVENESRP-CSYI-HTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVG 297 (484)
Q Consensus 220 ~~DIy~~l~~~E~e~~~-~dyl-~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvg 297 (484)
.+|||.+|+..|..+.| .+|+ ..|++|++.||.+++|||++++.+|+++++|+|+||+|||||++..++.+.++||+|
T Consensus 24 ~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~ 103 (271)
T 2w96_A 24 NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLG 103 (271)
T ss_dssp -CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHH
Confidence 67999999999999887 5887 579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchh----HHHHH
Q 011488 298 MGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDM----ENTVY 373 (484)
Q Consensus 298 iaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el----~~lA~ 373 (484)
+||||||||+||+++|++++|++++++.|++++|++||+.||++|+|+++.|||++||.+|++....+.+. ...+.
T Consensus 104 ~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~ 183 (271)
T 2w96_A 104 ATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQ 183 (271)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987665443 45788
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHHHHhCC----CCCC----hHHHHhhhCCCHHHHHHHHHHHHHHHhhc
Q 011488 374 FLAELGMMHYDTLMFSPSMVAASAVYAARCTLNR----SPAW----TDTLRFHTGFSETQLMDCARLLVYFHSKA 440 (484)
Q Consensus 374 yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~----~p~W----~~~L~~~tgys~~eL~~c~~~L~~l~~~a 440 (484)
+++++++.|+.|+.|+||.||+|||++|++.++. .+.| ...|.+++||++++|++|++.|..++...
T Consensus 184 ~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 184 TFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp HHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988742 3444 45788999999999999999999987643
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=4.6e-37 Score=301.87 Aligned_cols=207 Identities=19% Similarity=0.284 Sum_probs=184.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHh
Q 011488 243 QTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIA 322 (484)
Q Consensus 243 Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~is 322 (484)
+++....||..+++||.++|.+|+|+++|+++|++|||||++.+++.+.++|++|+||||||||+||. +++++||+.++
T Consensus 23 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 23 EADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999 89999998665
Q ss_pred --------------ccCCC--HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-ccc
Q 011488 323 --------------DNAYS--HPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMH-YDT 385 (484)
Q Consensus 323 --------------d~~yt--~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d-~~~ 385 (484)
++.|+ +++|++||+.||++|+|++.++||+.||.+|++....+.++..+|+++++.++++ ..+
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~ 181 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC 181 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHH
Confidence 44565 8999999999999999999999999999999999888888999999999999964 447
Q ss_pred cCCcHHHHHHHHHHHHHHHhCCC-------CCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcCccchHHHHHhhC
Q 011488 386 LMFSPSMVAASAVYAARCTLNRS-------PAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYA 453 (484)
Q Consensus 386 l~~~PS~IAAAal~lA~~~l~~~-------p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~~s~l~aI~kKYS 453 (484)
+.|+||.||+|||++|...++.. ..|.+.+ .++|++++|.+|+..|++++...+ .+++.|++++.
T Consensus 182 l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~-~~l~~~~~~~~ 253 (257)
T 2ivx_A 182 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTP-NRLKKIRNWRA 253 (257)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSH-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhCh-HHhhHHHHhhh
Confidence 89999999999999999998742 3577654 458999999999999999987655 47777877653
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=303.40 Aligned_cols=218 Identities=15% Similarity=0.225 Sum_probs=190.8
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhc-
Q 011488 245 EITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIAD- 323 (484)
Q Consensus 245 eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd- 323 (484)
+.-.+||..+++||.++|.+|+|+++|+++|++|||||++.+.+.+.++|+||+||||||||+||...|.++||+.+++
T Consensus 37 ~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 37 EEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 4446799999999999999999999999999999999999999999999999999999999999999889999987653
Q ss_pred -------------cCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcH
Q 011488 324 -------------NAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSP 390 (484)
Q Consensus 324 -------------~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~P 390 (484)
..|++++|++||+.||++|+|++.++||+.||.+|++....+.++.++|+++++.++.++.++.|+|
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~P 196 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPP 196 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCH
Confidence 2478999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC-CCChHHHHhhhCCCHHHHHHHHHHHHHHHhh----cCccchHHHHHhhCCCCCCceeecCC
Q 011488 391 SMVAASAVYAARCTLNRS-PAWTDTLRFHTGFSETQLMDCARLLVYFHSK----ASENRLQVVHKKYARTQRGSVSLLPP 465 (484)
Q Consensus 391 S~IAAAal~lA~~~l~~~-p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~----a~~s~l~aI~kKYS~~~~~~VA~~pp 465 (484)
|.||+||||+|.++++.. +.|.. .+|++.++|.+|+..|+++|.. ..+..+..+++||+.++ .+|
T Consensus 197 s~IAaAaiylA~~~~~~~~~~W~~----~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~------~~~ 266 (285)
T 3rgf_B 197 FMIALACLHVACVVQQKDARQWFA----ELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK------PPP 266 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHH----TSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC------CCC
T ss_pred HHHHHHHHHHHHHHcCCChhhHHH----HHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC------CCC
Confidence 999999999999998753 34554 4599999999999999998875 23456789999999998 455
Q ss_pred CCCccCC
Q 011488 466 AKSLLSG 472 (484)
Q Consensus 466 ~~~l~~~ 472 (484)
++++..+
T Consensus 267 ~~~~~~~ 273 (285)
T 3rgf_B 267 NSEGEQG 273 (285)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 5555444
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-36 Score=296.79 Aligned_cols=199 Identities=20% Similarity=0.329 Sum_probs=176.4
Q ss_pred CcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHH
Q 011488 241 HTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVR 320 (484)
Q Consensus 241 ~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~ 320 (484)
..++++...||..+++||.++|.+|+|+++|+++|++|||||++.+++.+.++|++|+||||||||+|| .+++++||+.
T Consensus 31 ~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~ 109 (258)
T 2i53_A 31 GLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIK 109 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999999 4889999986
Q ss_pred Hh-----ccCC------CHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhccccc
Q 011488 321 IA-----DNAY------SHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQ----DMENTVYFLAELGMMHYDT 385 (484)
Q Consensus 321 is-----d~~y------t~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~----el~~lA~yL~ELsL~d~~~ 385 (484)
++ ++.| ++++|++||+.||+.|+|++.+|||+.||.+|++....+. ++..+|++++++++.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~ 189 (258)
T 2i53_A 110 TARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLS 189 (258)
T ss_dssp HHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCch
Confidence 54 3444 4789999999999999999999999999999999877665 6889999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHhCCC-CCChHH------HH-hhhCCCHHHHHHHHHHHHHHHhhc
Q 011488 386 LMFSPSMVAASAVYAARCTLNRS-PAWTDT------LR-FHTGFSETQLMDCARLLVYFHSKA 440 (484)
Q Consensus 386 l~~~PS~IAAAal~lA~~~l~~~-p~W~~~------L~-~~tgys~~eL~~c~~~L~~l~~~a 440 (484)
+.|+||.||+|||++|+..++.. +.|... +. .++|+++++|.+|++.|++++...
T Consensus 190 l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 190 LQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred hccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988752 344321 12 247999999999999999887643
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2.5e-35 Score=304.00 Aligned_cols=204 Identities=21% Similarity=0.312 Sum_probs=180.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHh
Q 011488 243 QTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIA 322 (484)
Q Consensus 243 Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~is 322 (484)
+++....||..+++||.+++.+|+|+++|+++|++|||||++.+.+.+.++||||+||||||||+||. ++.++||+.++
T Consensus 30 ~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 30 DPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 34556689999999999999999999999999999999999999999999999999999999999999 88999998654
Q ss_pred --------------ccCCC--HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccc-c
Q 011488 323 --------------DNAYS--HPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYD-T 385 (484)
Q Consensus 323 --------------d~~yt--~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~-~ 385 (484)
++.|+ +++|++||+.||++|+|+|.++||+.||.+|++....+.++..+|++|++++++++. +
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~ 188 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS 188 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch
Confidence 34555 889999999999999999999999999999999888788899999999999996554 7
Q ss_pred cCCcHHHHHHHHHHHHHHHhCCC-------CCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcCccchHHHHH
Q 011488 386 LMFSPSMVAASAVYAARCTLNRS-------PAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHK 450 (484)
Q Consensus 386 l~~~PS~IAAAal~lA~~~l~~~-------p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~~s~l~aI~k 450 (484)
+.|+||.||+||||+|..+++.. ..|.+.+ .++|++++|.+|+..|++++..... .++.+..
T Consensus 189 l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 189 LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 89999999999999999998732 3577654 4589999999999999999876654 5666554
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=280.24 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccccccc-chhHHHHHHHHHHHhhhccccCCCHHHHHHHhcc-----
Q 011488 251 RAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSR-RELQLVGMGAMLIASKYEEIWAPEVNDLVRIADN----- 324 (484)
Q Consensus 251 R~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~-~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~----- 324 (484)
|..+++||.+++..|+|+++|+++|++|||||++.+++.+ .++|+||+||||||||+||. +++++||+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 7899999999875
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHH
Q 011488 325 -AYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARC 403 (484)
Q Consensus 325 -~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~ 403 (484)
.+++++|++||+.||+.|+|++.++||+.||.+|++....+.++..+|+++++.++.++.++.|+||.||+||||+|..
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~ 186 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCC 186 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998777888999999999999999999999999999999999998
Q ss_pred HhCCC-CCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcC
Q 011488 404 TLNRS-PAWTDTLRFHTGFSETQLMDCARLLVYFHSKAS 441 (484)
Q Consensus 404 ~l~~~-p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~ 441 (484)
.++.. |.|...+. |+++++|.+|++.|.+++....
T Consensus 187 ~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 187 NDENTIPKLLDLIK---STDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp SCTTHHHHHHHHCC---HHHHHHHHHHHHHHHHHHTSSS
T ss_pred hcCCCCCCCcchhh---cCCHHHHHHHHHHHHHHHhhCC
Confidence 77642 23554443 8999999999999999987544
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=8.1e-33 Score=281.50 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=182.8
Q ss_pred ccHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhc
Q 011488 246 ITERMRAILVDWLIDVHQEFE--LSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIAD 323 (484)
Q Consensus 246 It~~mR~~LVdWLieV~~~f~--L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd 323 (484)
-...+|...++||.++|.+|+ |+++|+++|++|||||++.+++.+.++|+||+||||||||+||. ++++++|++.+.
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~ 130 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLR 130 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhc
Confidence 335689999999999999999 99999999999999999999999999999999999999999998 678999987664
Q ss_pred c-----CCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhc------C-CCchhHHHHHHHHHHHhccccccCCcHH
Q 011488 324 N-----AYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKAS------I-PDQDMENTVYFLAELGMMHYDTLMFSPS 391 (484)
Q Consensus 324 ~-----~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~------~-~d~el~~lA~yL~ELsL~d~~~l~~~PS 391 (484)
. .|++++|++||+.||+.|+|+|.++||+.||.+|+... . ...++..+|+++++.+++++.++.|+||
T Consensus 131 ~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps 210 (323)
T 1jkw_A 131 ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPS 210 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHH
T ss_pred cChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHH
Confidence 3 47789999999999999999999999999999998653 1 2246789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-CCChHHHHhh--hCCCHHHHHHHHHHHHHHHhhc---CccchHHHHHhh
Q 011488 392 MVAASAVYAARCTLNRS-PAWTDTLRFH--TGFSETQLMDCARLLVYFHSKA---SENRLQVVHKKY 452 (484)
Q Consensus 392 ~IAAAal~lA~~~l~~~-p~W~~~L~~~--tgys~~eL~~c~~~L~~l~~~a---~~s~l~aI~kKY 452 (484)
.||+||||+|...++.. +.|...+..+ ++++.++|.+|++.|..++... ....+++|++|.
T Consensus 211 ~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 211 QIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999999999998854 7899988776 8899999999999999887653 345678888884
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=3.9e-27 Score=224.19 Aligned_cols=182 Identities=17% Similarity=0.150 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHH
Q 011488 251 RAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPE 330 (484)
Q Consensus 251 R~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~ 330 (484)
.....+||.+++..|+|+.+|+.+|+.|||||+..+.+...+.++++++|||||||+||. +++++||+.+++ ++..+
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~~ 81 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKKE 81 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHHH
Confidence 456789999999999999999999999999999999999999999999999999999997 889999999887 89999
Q ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCC
Q 011488 331 VLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPA 410 (484)
Q Consensus 331 Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~ 410 (484)
|.++|+.||+.|+|++..++|+.||.+|++....+.++..+|+++++.++.+.-++.|+|+.||+||||+|...++ .+.
T Consensus 82 i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~-~~~ 160 (207)
T 1c9b_A 82 IGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASA-EKR 160 (207)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSS-SCC
T ss_pred HHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHC-CCC
Confidence 9999999999999999999999999999999888888999999999999987778899999999999999998876 457
Q ss_pred ChHHHHhhhCCCHHHHHHHHHHHHHH
Q 011488 411 WTDTLRFHTGFSETQLMDCARLLVYF 436 (484)
Q Consensus 411 W~~~L~~~tgys~~eL~~c~~~L~~l 436 (484)
|...+..++|+++.+|.+|++.|...
T Consensus 161 ~~~~i~~~~~v~~~tI~~~~~~l~~~ 186 (207)
T 1c9b_A 161 TQKEIGDIAGVADVTIRQSYRLIYPR 186 (207)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999998864
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.91 E-value=4.6e-23 Score=194.84 Aligned_cols=183 Identities=13% Similarity=0.055 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHH
Q 011488 251 RAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPE 330 (484)
Q Consensus 251 R~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~ 330 (484)
.....+||.+++..++|++.+...|..||+||+....+.....+.++++|||||||.|| .+.+++|++.+++ ++..+
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~~ 85 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKKE 85 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHHH
Confidence 45788999999999999999999999999999999999999999999999999999999 5889999999886 89999
Q ss_pred HHHHHHHHHHHcCCcccC--CCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCC
Q 011488 331 VLAMEKTILGKLEWTLTV--PTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRS 408 (484)
Q Consensus 331 Il~mE~~IL~~L~w~L~~--PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~ 408 (484)
|.++++.|++.|+|++.. ++|+.|+.+|.+.+..+.++.+.|+++++.+..+.-+..++|+.||+||||+|...++ .
T Consensus 86 i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~-~ 164 (200)
T 1ais_B 86 IGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEG-E 164 (200)
T ss_dssp HHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhC-C
Confidence 999999999999999999 9999999999999888889999999999999988888889999999999999988876 4
Q ss_pred CCChHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 409 PAWTDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 409 p~W~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
+.|...+..++|+++.+|..|++.|...+
T Consensus 165 ~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 165 KRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 67999999999999999999999998754
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.3e-19 Score=184.03 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 252 AILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 252 ~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
......|.+++..++|+..+...|..||.|++....+.....+.++++|||||||.|+. |.++.||+.+++ ++..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 46779999999999999999999999999999999999999999999999999998886 889999999887 889999
Q ss_pred HHHHHHHHHHcC------------CcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHH
Q 011488 332 LAMEKTILGKLE------------WTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVY 399 (484)
Q Consensus 332 l~mE~~IL~~L~------------w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~ 399 (484)
.++++.|++.|+ +++..++|+.|+.+|+..+..+.++..+|++|++.++.+.-+..++|+.||+||||
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIy 283 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHH
Confidence 999999999999 99999999999999999888788899999999999988777788999999999999
Q ss_pred HHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 400 AARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 400 lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
+|..+++. +.|...+...+|+++..|+.+++.|..+.
T Consensus 284 lAa~~~~~-~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 284 LNILLFQI-PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99988764 46888999999999999999999998764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.40 E-value=5e-13 Score=137.10 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 252 AILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 252 ~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
......|.+++..++|+..+.-.|..||.+++....+.......++++|||||||.++ .|.++.||..+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 4567789999999999999999999999999999888888999999999999999877 4789999998876 689999
Q ss_pred HHHHHHHHHHcCCc------------ccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHH
Q 011488 332 LAMEKTILGKLEWT------------LTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVY 399 (484)
Q Consensus 332 l~mE~~IL~~L~w~------------L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~ 399 (484)
.+..+.|++.|+.. +...+|.+|+.+|...+..+.++...|..|++.+.-+.-....+|+.||+||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 99999999999864 667889999999999887788899999999988776554567999999999999
Q ss_pred HHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHH
Q 011488 400 AARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFH 437 (484)
Q Consensus 400 lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~ 437 (484)
+|..+++.. .-...+...+|+++..|+..++.|....
T Consensus 284 lAa~l~g~~-~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 284 LNILLFQIP-ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 998877642 3345677788999999999998887653
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.30 E-value=3.8e-06 Score=83.90 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccc---ccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHH
Q 011488 254 LVDWLIDVHQEFELSQETLYLTINIIDRFLSVK---VVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPE 330 (484)
Q Consensus 254 LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~---~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~ 330 (484)
+-+||..+.....++.+++-+|..|+||+.... .+...+.+-+-++||.+|+|+-+.....-+.+..++ .++.++
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHHH
Confidence 778999999999999999999999999998743 355667888899999999999777777778888774 489999
Q ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Q 011488 331 VLAMEKTILGKLEWTLTVPTYYVFLVRFIK 360 (484)
Q Consensus 331 Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~ 360 (484)
+-.||+..|..|+|+|.+. ...|..+++.
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E 183 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIE 183 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHH
Confidence 9999999999999999765 4455554443
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.72 E-value=0.0083 Score=55.77 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=103.2
Q ss_pred hhHHHHHhhhhhhhcccCCCCCccccCCCcCCCCCccccccHHHHHHHHHHHHhhcCCCCccCcCccccHHHHHHHHHHH
Q 011488 179 TLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWL 258 (484)
Q Consensus 179 ~l~s~l~~rs~~a~~~~~~p~~~i~diD~~d~~n~l~~~eY~~DIy~~l~~~E~e~~~~dyl~~Q~eIt~~mR~~LVdWL 258 (484)
+...+..+.-..+|...+.|.. +.||- +..+ +. ..+|.+.|+.+.....- ...+. -..-.++|
T Consensus 50 ~~~~vaaAclylAcr~~~~p~~-l~di~--~~~~---v~--~~~i~~~~~~l~~~L~~----~~~~~-----~~~p~~~i 112 (200)
T 1ais_B 50 SIESVMAACVYAACRLLKVPRT-LDEIA--DIAR---VD--KKEIGRSYRFIARNLNL----TPKKL-----FVKPTDYV 112 (200)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCC-HHHHH--HHTT---SC--HHHHHHHHHHHHHHTTC----CTTTT-----CCCGGGGH
T ss_pred CHHHHHHHHHHHHHHHcCCCCC-HHHHH--HHHC---CC--HHHHHHHHHHHHHHhcc----cCCcC-----CCCHHHHH
Confidence 4566677777778887766653 22222 1111 11 24565555554433221 10000 00124677
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHH
Q 011488 259 IDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTI 338 (484)
Q Consensus 259 ieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~I 338 (484)
..++..++|+.++...|..++.+.+....+.......++++|+++||+.... +.+.+++..+++ ++...|...=+.|
T Consensus 113 ~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~~~l 189 (200)
T 1ais_B 113 NKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRYKEL 189 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHHHHH
Confidence 8888999999999999999999999877777888999999999999998764 457889988876 6889999999999
Q ss_pred HHHcCCcc
Q 011488 339 LGKLEWTL 346 (484)
Q Consensus 339 L~~L~w~L 346 (484)
.+.|+..+
T Consensus 190 ~~~l~~~~ 197 (200)
T 1ais_B 190 VEKLKIKV 197 (200)
T ss_dssp HHHHTCCC
T ss_pred HHHcCCCC
Confidence 99998655
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.29 E-value=0.13 Score=47.97 Aligned_cols=86 Identities=9% Similarity=0.036 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHH
Q 011488 351 YYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCA 430 (484)
Q Consensus 351 p~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~ 430 (484)
.+.++..+.......+.+...|..+....+....+..+++..+|+||||+|++..+. |.-...+...++++..+|..+.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHCCCHHHHHHHH
Confidence 466788888777777788888888888877766667799999999999999987664 5666778888999999999998
Q ss_pred HHHHHHH
Q 011488 431 RLLVYFH 437 (484)
Q Consensus 431 ~~L~~l~ 437 (484)
..|++..
T Consensus 87 ~~ll~~L 93 (207)
T 1c9b_A 87 KLILKAL 93 (207)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887643
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=91.33 E-value=1.5 Score=41.49 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccC-CcHHHHHHHHHHHHHHHhCCCCCChHHHHhhh--------CCC
Q 011488 352 YVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLM-FSPSMVAASAVYAARCTLNRSPAWTDTLRFHT--------GFS 422 (484)
Q Consensus 352 ~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~-~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~t--------gys 422 (484)
.+||...........++..+|..+.+..+....+.. +.+..||+||||+|.+.-+. |.-...+...+ .++
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~~~~~ 110 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLKVKLS 110 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCSSCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccchhhcc
Confidence 456666666666667777888888877777677778 99999999999999988764 44444554444 578
Q ss_pred HHHHHHHHHHHHHHH
Q 011488 423 ETQLMDCARLLVYFH 437 (484)
Q Consensus 423 ~~eL~~c~~~L~~l~ 437 (484)
.++|..+-..|++.+
T Consensus 111 ~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 111 RSNISEIEFEIISVL 125 (235)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999877777543
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.82 E-value=1.4 Score=42.21 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhh-cccccccchhHHHHHHHHHHHhhhccccCCCHH---HHHHHhccCCCHHHH
Q 011488 256 DWLIDVHQEFELSQETLYLTINIIDRFL-SVKVVSRRELQLVGMGAMLIASKYEEIWAPEVN---DLVRIADNAYSHPEV 331 (484)
Q Consensus 256 dWLieV~~~f~L~~eTl~LAV~llDRfL-s~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~---dlv~isd~~yt~~~I 331 (484)
+||......++.+.++..+|.+++..-+ .....-......+|++|+++|+++-....|... ......+..|+.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4556666778888999899998885544 233345566789999999999998554333211 122222445899999
Q ss_pred HHHHHHHHHHc
Q 011488 332 LAMEKTILGKL 342 (484)
Q Consensus 332 l~mE~~IL~~L 342 (484)
..+-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=88.35 E-value=2.3 Score=43.02 Aligned_cols=87 Identities=5% Similarity=-0.089 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHH
Q 011488 350 TYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDC 429 (484)
Q Consensus 350 Tp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c 429 (484)
..+..|..+...+...+.+...|..|...++..-.+-..+...|||||||+|++..+ .|.-...+...++++..+|..+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~v~~keigr~ 206 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhCCCHHHHHHH
Confidence 355666777777677777888888888776553333458899999999999988765 4555667778899999999999
Q ss_pred HHHHHHHH
Q 011488 430 ARLLVYFH 437 (484)
Q Consensus 430 ~~~L~~l~ 437 (484)
++.|...+
T Consensus 207 ~k~l~~~L 214 (345)
T 4bbr_M 207 LNIMKNIL 214 (345)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99887643
No 25
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=88.22 E-value=3.4 Score=39.99 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHH
Q 011488 353 VFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCA 430 (484)
Q Consensus 353 ~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~ 430 (484)
+||...........+...+|-.+++.-+....+.....-.+|++|+++|.+.-+..+.-...+...++ |+.++|..+-
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 34444444444556667777777777666556666889999999999999987764444566666764 8999999987
Q ss_pred HHHHHH
Q 011488 431 RLLVYF 436 (484)
Q Consensus 431 ~~L~~l 436 (484)
..|++.
T Consensus 123 ~~IL~~ 128 (269)
T 2b9r_A 123 MKILRA 128 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777754
No 26
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=87.72 E-value=4.5 Score=39.01 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=49.2
Q ss_pred CchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHHHHHHHH
Q 011488 365 DQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCARLLVYF 436 (484)
Q Consensus 365 d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~~~L~~l 436 (484)
..+...+|-.+++--+....+.....-.+|++|+++|.+.-+..|.-...+..+++ |+.++|..+-..|++.
T Consensus 74 ~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~ 147 (271)
T 2w96_A 74 EEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNK 147 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33444455555554444444556789999999999999988764544556666654 8999999887776653
No 27
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=87.31 E-value=1.4 Score=42.00 Aligned_cols=88 Identities=9% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCH------HHHHHHhccC
Q 011488 256 DWLIDVHQEFELSQ----ETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEV------NDLVRIADNA 325 (484)
Q Consensus 256 dWLieV~~~f~L~~----eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l------~dlv~isd~~ 325 (484)
+||......++.+. +...+|.++++..+.....-......+|++|+++|+++-....+.. ...-......
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 57777778888887 5788899999887776666667788999999999999865422211 1111111236
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 011488 326 YSHPEVLAMEKTILGKLE 343 (484)
Q Consensus 326 yt~~~Il~mE~~IL~~L~ 343 (484)
++.++|..+-..|++..+
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999988764
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=85.36 E-value=3.9 Score=39.24 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhh--CCCHHHHHHHHH
Q 011488 354 FLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHT--GFSETQLMDCAR 431 (484)
Q Consensus 354 FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~t--gys~~eL~~c~~ 431 (484)
|+...........+...+|-.+++--+....+.....-.+|+||+++|.+.-+..+.-...+...+ .|+.++|..+-.
T Consensus 45 wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~ 124 (260)
T 2cch_B 45 WLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 124 (260)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHH
Confidence 333333333334445555555555444433444466788999999999998876454556666666 489999999877
Q ss_pred HHHHHH
Q 011488 432 LLVYFH 437 (484)
Q Consensus 432 ~L~~l~ 437 (484)
.|+...
T Consensus 125 ~iL~~L 130 (260)
T 2cch_B 125 LVLKVL 130 (260)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 777643
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=85.26 E-value=5.4 Score=38.09 Aligned_cols=84 Identities=8% Similarity=0.056 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHH
Q 011488 353 VFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCA 430 (484)
Q Consensus 353 ~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~ 430 (484)
+|+...........+.-.+|-.+++--+....+.....-.+|++|+++|.+.-+..|.-...+...++ |+.++|..+-
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 34444444444456677777777777666555667889999999999999987765544555655553 7899999887
Q ss_pred HHHHHH
Q 011488 431 RLLVYF 436 (484)
Q Consensus 431 ~~L~~l 436 (484)
..|++.
T Consensus 137 ~~IL~~ 142 (254)
T 2f2c_A 137 KDILEA 142 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 30
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=84.52 E-value=7.2 Score=38.05 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhh-------------
Q 011488 353 VFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHT------------- 419 (484)
Q Consensus 353 ~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~t------------- 419 (484)
+||..........+++..+|..+.+--+....+..+.+..||+|||++|.+.-+....-...+...+
T Consensus 48 ~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~ 127 (285)
T 3rgf_B 48 NVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFP 127 (285)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCc
Confidence 4455555555556677788887777777777777899999999999999987664321122332211
Q ss_pred ---CCCHHHHHHHHHHHHHH
Q 011488 420 ---GFSETQLMDCARLLVYF 436 (484)
Q Consensus 420 ---gys~~eL~~c~~~L~~l 436 (484)
.++.++|..+-..|+..
T Consensus 128 ~~~~~~~~~Il~~E~~iL~~ 147 (285)
T 3rgf_B 128 KEFPYRMNHILECEFYLLEL 147 (285)
T ss_dssp SCCCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 25778888887766654
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=84.36 E-value=4.8 Score=38.50 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHHHHHHHH
Q 011488 363 IPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCARLLVYF 436 (484)
Q Consensus 363 ~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~~~L~~l 436 (484)
....+.-.+|-.+++-.+....+.....-.+|++|+++|.+.-+..+.-...+...++ |+.++|..+-..|++.
T Consensus 66 ~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~ 141 (257)
T 1g3n_C 66 NLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEK 141 (257)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3344555555555555554444444667889999999999987765444556666654 8999999887666653
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=84.17 E-value=6 Score=39.16 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=49.1
Q ss_pred CCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHHHHHHHH
Q 011488 364 PDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCARLLVYF 436 (484)
Q Consensus 364 ~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~~~L~~l 436 (484)
...++..+|-.+++--+....+.....-.+|++|+++|.+.-+..+.-...+..+++ |+.++|..+-..|+..
T Consensus 87 l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~ 161 (306)
T 3g33_B 87 CEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGK 161 (306)
T ss_dssp CCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHH
Confidence 344444555555544444344556788899999999999987765544555666665 7899998887666653
No 33
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.28 E-value=1.2 Score=45.29 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhc-ccccccchhHHHHHHHHHHHhhhccccCCCH---HHHHHHhccCCCHHHH
Q 011488 256 DWLIDVHQEFELSQETLYLTINIIDRFLS-VKVVSRRELQLVGMGAMLIASKYEEIWAPEV---NDLVRIADNAYSHPEV 331 (484)
Q Consensus 256 dWLieV~~~f~L~~eTl~LAV~llDRfLs-~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l---~dlv~isd~~yt~~~I 331 (484)
+||..+...++++.++..+|.+++..-+. ....-......||++||++|+++-....|.. ..+....+..|+.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35555666778888999999998865543 3324455677999999999999865433211 1122222345899999
Q ss_pred HHHHHHHHHHc
Q 011488 332 LAMEKTILGKL 342 (484)
Q Consensus 332 l~mE~~IL~~L 342 (484)
..+-..||+.+
T Consensus 235 ~~i~~~il~~y 245 (358)
T 2pk2_A 235 DELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 34
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=83.16 E-value=0.87 Score=46.05 Aligned_cols=87 Identities=5% Similarity=-0.092 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHH
Q 011488 351 YYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCA 430 (484)
Q Consensus 351 p~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~ 430 (484)
.+.+|..+...+...+.+...|..|...++..-.+-..+...||+||||+|++..+ .|.-...+...++++..+|..++
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~-~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB-SSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHCCCHHHHHHHH
Confidence 45667777776666777788888887776554444568899999999999987554 45556677788999999999999
Q ss_pred HHHHHHHh
Q 011488 431 RLLVYFHS 438 (484)
Q Consensus 431 ~~L~~l~~ 438 (484)
+.|.+.+.
T Consensus 208 ~~l~~~L~ 215 (345)
T 3k7a_M 208 NIMKNILR 215 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 98887654
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=80.04 E-value=10 Score=36.91 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHHHhcc-ccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhh--CCCHHHHHHHHHHHHHHH
Q 011488 365 DQDMENTVYFLAELGMMH-YDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHT--GFSETQLMDCARLLVYFH 437 (484)
Q Consensus 365 d~el~~lA~yL~ELsL~d-~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~t--gys~~eL~~c~~~L~~l~ 437 (484)
..+.-.+|-.+++--+.- ........-.+|++|+++|.+.-+..+.-...+..++ .|+.++|..+-..|+..+
T Consensus 67 ~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 67 HRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp BHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 334444444444443332 2234577889999999999998876554455666666 489999999877777643
No 36
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=78.19 E-value=16 Score=36.38 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHhcCCCchhHHHHHHHHH-HHhccccc--cCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHH
Q 011488 349 PTYYVFLVRFIKASIPDQDMENTVYFLAE-LGMMHYDT--LMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQ 425 (484)
Q Consensus 349 PTp~~FL~~fl~~~~~d~el~~lA~yL~E-LsL~d~~~--l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~e 425 (484)
++-+.||.++++....+..+.-++.++++ +......+ ......-|-.+|+.+|.+.++....|+..+..+.|++..|
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~E 154 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHE 154 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHH
Confidence 45688999888876666555555544444 33322233 3477888999999999999998878889999999999999
Q ss_pred HHHHHHHHHH
Q 011488 426 LMDCARLLVY 435 (484)
Q Consensus 426 L~~c~~~L~~ 435 (484)
|...=..++.
T Consensus 155 LN~LE~eFL~ 164 (293)
T 2pmi_B 155 LNILENDFLK 164 (293)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887555554
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=76.59 E-value=15 Score=34.94 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccc---ccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHH
Q 011488 253 ILVDWLIDVHQEFELSQETLYLTINIIDRFLSVK---VVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHP 329 (484)
Q Consensus 253 ~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~---~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~ 329 (484)
.+.+-|..++.+-.++..+|--||.+--.|.-.+ ...-++-+-|+++|++||+- +-..|..+.++..+ |.+...=
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae-~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE-EAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH-HcCCCccHHHHHHH-hhhhhHH
Confidence 3556678999999999999999999999887543 45556788999999999996 44467778887655 4444433
Q ss_pred HHHHHHHHHHHHcCC
Q 011488 330 EVLAMEKTILGKLEW 344 (484)
Q Consensus 330 ~Il~mE~~IL~~L~w 344 (484)
++.+ ..|++.|+-
T Consensus 92 elrr--~Eiv~~l~l 104 (260)
T 3h4c_A 92 ELRR--ADIVRELHL 104 (260)
T ss_dssp HHHH--HHHHHHTTC
T ss_pred HHHH--HHHHHHccC
Confidence 3333 335555543
No 38
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=75.15 E-value=21 Score=35.43 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=52.9
Q ss_pred HHHHHHHhcC--CCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCC-------HH
Q 011488 354 FLVRFIKASI--PDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFS-------ET 424 (484)
Q Consensus 354 FL~~fl~~~~--~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys-------~~ 424 (484)
||..+..... ...++..+|..+..--+....+..+.+-.||+||||+|.+.-+.. .-...+...+.-+ .+
T Consensus 63 ~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~-~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFN-VSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCC-CCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCC-CCHHHHHHHhccChhhhHHHHH
Confidence 4445555555 456677777777777777777778999999999999999877653 2233333333222 46
Q ss_pred HHHHHHHHHHH
Q 011488 425 QLMDCARLLVY 435 (484)
Q Consensus 425 eL~~c~~~L~~ 435 (484)
+|..+-..|+.
T Consensus 142 ~Il~~E~~iL~ 152 (323)
T 1jkw_A 142 QILEYELLLIQ 152 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67666555554
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=68.60 E-value=37 Score=32.50 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC--CCHHHHHHHHHHHHH
Q 011488 365 DQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG--FSETQLMDCARLLVY 435 (484)
Q Consensus 365 d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg--ys~~eL~~c~~~L~~ 435 (484)
..++-.+|-.+++--|..........-.+|++|+++|.+.-+..|.-...+..+++ |+.++|...=..++.
T Consensus 66 ~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~ 138 (252)
T 1f5q_B 66 DNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLD 138 (252)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444444444443333233334567889999999999988765555566666664 788998886555554
No 40
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=35.76 E-value=30 Score=30.73 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCHHHHH---HHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 266 ELSQETLY---LTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 266 ~L~~eTl~---LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
++..++++ +|-+|||- -.|+-++|-++|..+....+-.++.+..|.+ -||.++-
T Consensus 92 ~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNI-----------KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp ---------CHHHHHHTTC-----------HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 45666654 46666653 2478899999999998766655666666643 4887653
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=34.63 E-value=91 Score=30.94 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcc----cccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhc
Q 011488 258 LIDVHQEFELSQETLYLTINIIDRFLSV----KVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIAD 323 (484)
Q Consensus 258 LieV~~~f~L~~eTl~LAV~llDRfLs~----~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd 323 (484)
..++|..++++..|.-.|..++.+.-+. .....+ -+..-.+|||+|+.-.|....++..++..++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4578999999999999999999996553 122222 3333445699999877777788888877764
No 42
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=33.23 E-value=46 Score=29.33 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.8
Q ss_pred CCCHHHHH---HHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 266 ELSQETLY---LTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 266 ~L~~eTl~---LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
++..++++ +|-+|||- -.|+-++|-++|..+....+-.++.+..|.+ -||.++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~-d~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKN-DFTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCC-CSCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 67777764 35566643 2478899999999998876656666666643 4776643
No 43
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=29.91 E-value=61 Score=29.10 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=38.9
Q ss_pred cCCCHHHHH---HHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 265 FELSQETLY---LTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 265 f~L~~eTl~---LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
+++..+++| +|-+|||- -.|+-++|-.+|..+....+-.++.+..|.+. ||.++-
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd-~t~eEe 156 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND-FTPEEE 156 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCC-CCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHH
Confidence 467787775 35566553 25788999999999987766667777776544 887753
No 44
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=26.86 E-value=59 Score=28.12 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCHHHHH---HHHHHHHHhhcccccccchhHHHHHHHHHHHhhhccccCCCHHHHHHH
Q 011488 254 LVDWLIDVHQEFELSQETLY---LTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRI 321 (484)
Q Consensus 254 LVdWLieV~~~f~L~~eTl~---LAV~llDRfLs~~~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~i 321 (484)
+-+|=.++ +++..++++ +|-+|||- -.|+-++|-++|..+....+-.++.+..|
T Consensus 79 i~~wD~~F---~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 79 IPVWDQEF---LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp --HHHHHH---TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred hhHHHHHH---HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 44555442 368888875 56677654 35788999999999977655445555443
No 45
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=25.15 E-value=2.9e+02 Score=22.74 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhccc------ccccchhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHH
Q 011488 258 LIDVHQEFELSQETLYLTINIIDRFLSVK------VVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEV 331 (484)
Q Consensus 258 LieV~~~f~L~~eTl~LAV~llDRfLs~~------~V~~~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~I 331 (484)
+.++|..|++.. ....|-.+|++|=..- .++-++.+ ...+|+|.|||.--..+. -..|+..++ .+..++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVd-K~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVD-KNKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCC-HHHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCC-HHHHHHHHC--CCHHHH
Confidence 457888898654 7788889999997542 23333444 566899999998776553 345555554 456777
Q ss_pred HHHHHHHHH
Q 011488 332 LAMEKTILG 340 (484)
Q Consensus 332 l~mE~~IL~ 340 (484)
-..|..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 46
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=20.84 E-value=2e+02 Score=23.71 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHHh
Q 011488 388 FSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHS 438 (484)
Q Consensus 388 ~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~~ 438 (484)
+.-=.-+++|+|.+.+.++.. .-...|...+|.+..++......+-.+..
T Consensus 43 ~s~P~f~aaA~~~acr~~K~k-VdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKLK-VDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTCC-CCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHccC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444456778888888777643 34678899999999999998888776643
Done!