Citrus Sinensis ID: 011489

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccEEEEEEcEEEEEEEEEEcccEEEEEcccccEEEEcccccccccccccEEEEEEEEccEEEEcEEEEEccccccccEEEEEEcccEEEEEcEEEEEcccccccccccEEEEccEEEEEccEEEcccEEEEEccEEEEEcccccccEEEcccccccccccEEEEEccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccEEEcccccccEccHHHHHHHccccccccEEEccEEEEEEEEccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEcccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEccccccccccccccccccEEEEEccEcHHHccccccccccEEEccHHHHHHccHHHHHccccccccccccccccc
METPPWFTIILLWLLSASMswgamhsnnYQNKIQkecsftrfpilCVRAVTDHCEEMMSMSLKRLEKSLLALqnsptknkdDIQTWLGAALTFQQTCKDsvnslglseRNEVIKKISQKMDYLSQLTSNPLALVNRIArasypknstynrrldeeqgdfpnwvsAKNRkllqaprinanvivaqdgtgnyRTVSEAISAASGNRFVIYVKAGVykekirtnkdgitligdgkyttiitgddnarrgtsmpatatftitgdgfiardigfhntagpqgEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFyrdtdiygtidFIFGNAAAVFQNCYlvlrrpkgsynaitangrtdpgqntgfslqnckiaagsdyapvkhkynsylgrpwkqYSRAVVMQSSiddsisssgwvewpgaggyantLYFAEyanvgpgaatsnrvkwpgfhvigpdvaVKFTVANFiagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSvnslglserNEVIKKISQKMDYLSQLTSNPLALVNRIarasypknstynrrLDEEQGDFPNWVSAKNRkllqaprinANVIVAQDGTGNYRTVSEAisaasgnrfVIYVKAgvykekirtnkdgitligdgkyttiitgddnarrgtsmPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITAngrtdpgqntGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQssiddsisssGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
****PWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSM*********************DIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASY****************FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANG******NTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
*****WFTIILLWLLSASMSWG**************************AVTDHCEEMMSMSLKRLEKSLL*********KDDIQTWLGAALTFQQTCKDSVNSLGL*************MDYLSQLTSNPLALVNRIA*******************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
***PPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIAR******************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
Q3E989512 Probable pectinesterase/p yes no 0.780 0.738 0.535 1e-119
O04887510 Pectinesterase 2 OS=Citru no no 0.853 0.809 0.476 1e-109
P83947545 Pectinesterase/pectineste N/A no 0.853 0.757 0.461 1e-103
O22149511 Probable pectinesterase/p no no 0.855 0.810 0.464 1e-102
Q96576544 Pectinesterase 3 OS=Solan N/A no 0.867 0.772 0.456 1e-102
Q1JPL7557 Pectinesterase/pectineste no no 0.857 0.745 0.470 1e-102
Q96575550 Pectinesterase 2.2 OS=Sol N/A no 0.869 0.765 0.453 1e-100
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.869 0.765 0.458 1e-100
Q9LYT5529 Probable pectinesterase/p no no 0.867 0.793 0.462 2e-99
Q9FK05587 Probable pectinesterase/p no no 0.917 0.756 0.439 2e-99
>sp|Q3E989|PME54_ARATH Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1 Back     alignment and function desciption
 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/420 (53%), Positives = 278/420 (66%), Gaps = 42/420 (10%)

Query: 49  AVTDHCEEMMSMSLKRLEKSLLALQNSPTK--NKDDIQTWLGAALTFQQTCKDSVNSLGL 106
           +V+D CE +M MS +RL +++ AL  S  K   K D+QTWL AA+TFQQ CKDS+   G 
Sbjct: 107 SVSDSCERLMKMSTRRLRQAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGG 166

Query: 107 SERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAK 166
           S     I  ISQKMD+LS+L SN L LV+ I +   PK  +            P WV+A 
Sbjct: 167 SSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTA---------LPRWVTAG 217

Query: 167 NRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGIT 226
            R+LL   R  A+V+VA+DG+G+YRTV EA++AA GN                       
Sbjct: 218 ERRLL-VGRARAHVVVAKDGSGDYRTVMEAVTAAHGN----------------------- 253

Query: 227 LIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVA 286
               GK  T+I GDD+A  GTS+P TAT T+TGDGFIARDIG  N AGP+G QA+AL++ 
Sbjct: 254 ----GKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSIT 309

Query: 287 SDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKG- 345
           SD +V YRCSI+GYQDTLYA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C + LRRP G 
Sbjct: 310 SDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGV 369

Query: 346 -SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSS 404
            +YN I ANGRTD  QNTGF+L +C+I   SD +PVKHKY+SYLGRPW++YSRA+VM+S 
Sbjct: 370 KAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESY 429

Query: 405 IDDSISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTV 463
           IDD+I+  GW  W  +G     TLYF E+ N GP A  S RV W GFH IG + A  F+V
Sbjct: 430 IDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIGFEEANYFSV 489
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q96576|PME3_SOLLC Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description
>sp|Q96575|PME22_SOLLC Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 Back     alignment and function description
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LYT5|PME35_ARATH Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
255550291527 Pectinesterase-2 precursor, putative [Ri 0.975 0.895 0.643 0.0
359484245506 PREDICTED: probable pectinesterase/pecti 0.933 0.893 0.617 1e-175
356532840514 PREDICTED: LOW QUALITY PROTEIN: probable 0.890 0.838 0.662 1e-167
297812269527 pectinesterase family protein [Arabidops 0.807 0.741 0.545 1e-123
15242077512 Putative pectinesterase/pectinesterase i 0.780 0.738 0.535 1e-117
255554971547 Pectinesterase precursor, putative [Rici 0.859 0.760 0.504 1e-110
116788449571 unknown [Picea sitchensis] 0.915 0.775 0.468 1e-110
116788113557 unknown [Picea sitchensis] 0.869 0.755 0.490 1e-110
2098713510 pectinesterase [Citrus sinensis] 0.853 0.809 0.478 1e-108
354718774519 PME5 [Gossypium barbadense] 0.859 0.801 0.491 1e-107
>gi|255550291|ref|XP_002516196.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223544682|gb|EEF46198.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/527 (64%), Positives = 394/527 (74%), Gaps = 55/527 (10%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVRAV------------------ 50
            ++ WLL ++++  +M  N    +IQ+ECSFTR+P LC++ +                  
Sbjct: 4   FMIFWLLGSALAASSMDENL---QIQEECSFTRYPSLCLQTLRGLRDDSVHIVSALVNKS 60

Query: 51  -----------------------------TDHCEEMMSMSLKRLEKSLLALQNSPTKNKD 81
                                        TD+CE +M MSLK L+KSLLAL+ SP KNK+
Sbjct: 61  ISETKLPVSFFTSLTSQLGIQEAQYTQSTTDYCENLMKMSLKLLDKSLLALKQSPEKNKN 120

Query: 82  DIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIA--- 138
           DIQTWL AALT+QQ CKDSV+SLGL     +  +IS+KMDYLS+L SNPLALVNRI    
Sbjct: 121 DIQTWLSAALTYQQACKDSVDSLGLPT-GGLTSQISRKMDYLSELVSNPLALVNRITGDH 179

Query: 139 RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAIS 198
                KNST +R L EE  DFP WVSAK+RKLLQ+  I AN +VA+DGTGNY TVSEAI 
Sbjct: 180 DNKLKKNSTRSRYLGEEIQDFPKWVSAKDRKLLQSSTIKANAVVAKDGTGNYETVSEAIK 239

Query: 199 AASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTIT 258
           AA G RFVIYVKAGVYKEKIRTNKDGITLIG+GKY+TII GDD+   G+SMP +ATFTIT
Sbjct: 240 AAGGGRFVIYVKAGVYKEKIRTNKDGITLIGEGKYSTIIVGDDSVGDGSSMPGSATFTIT 299

Query: 259 GDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 318
           GDGFIARDIGF N AGPQGEQALAL +ASDH+V YRCSIAGYQDTLYAL+ RQFYR+ DI
Sbjct: 300 GDGFIARDIGFQNAAGPQGEQALALYIASDHSVLYRCSIAGYQDTLYALSQRQFYRECDI 359

Query: 319 YGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDY 377
           YGTIDFIFGNAAAVFQNCYLVLRRP  GSYN I ANGR+DPGQNTGFS+QNC+I A SD+
Sbjct: 360 YGTIDFIFGNAAAVFQNCYLVLRRPDHGSYNVILANGRSDPGQNTGFSVQNCRITASSDF 419

Query: 378 APVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGP 437
           +PVKH YNSYLGRPWKQYSR+++M+S IDD+IS  GW+EWPGAG Y+ +LYFAEY+N GP
Sbjct: 420 SPVKHSYNSYLGRPWKQYSRSIIMESYIDDAISWKGWIEWPGAGSYSKSLYFAEYSNTGP 479

Query: 438 GAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 484
           GA TS R  WPGFHVIG + AVKFTV  FI+G+SWLPSTGV F  GL
Sbjct: 480 GAGTSKRPNWPGFHVIGAEEAVKFTVGKFISGSSWLPSTGVTFISGL 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484245|ref|XP_002277293.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 54-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532840|ref|XP_003534978.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 54-like [Glycine max] Back     alignment and taxonomy information
>gi|297812269|ref|XP_002874018.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319855|gb|EFH50277.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242077|ref|NP_197586.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] gi|122214307|sp|Q3E989.1|PME54_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 54; Includes: RecName: Full=Pectinesterase inhibitor 54; AltName: Full=Pectin methylesterase inhibitor 54; Includes: RecName: Full=Pectinesterase 54; Short=PE 54; AltName: Full=Pectin methylesterase 54; Short=AtPME54; Flags: Precursor gi|332005515|gb|AED92898.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255554971|ref|XP_002518523.1| Pectinesterase precursor, putative [Ricinus communis] gi|223542368|gb|EEF43910.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116788449|gb|ABK24883.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|116788113|gb|ABK24761.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|2098713|gb|AAB57671.1| pectinesterase [Citrus sinensis] Back     alignment and taxonomy information
>gi|354718774|gb|AER38244.1| PME5 [Gossypium barbadense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2147097512 AT5G20860 [Arabidopsis thalian 0.506 0.478 0.602 6.5e-116
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.799 0.757 0.493 8.7e-95
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.911 0.737 0.429 6.9e-94
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.857 0.745 0.463 8.1e-92
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.917 0.756 0.432 2.7e-91
TAIR|locus:2077710529 PME61 "pectin methylesterase 6 0.873 0.799 0.456 4.5e-91
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.789 0.703 0.462 5e-89
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.878 0.792 0.443 9.6e-89
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.630 0.587 0.515 2.7e-88
TAIR|locus:2053728518 ATPMEPCRD [Arabidopsis thalian 0.861 0.805 0.443 4.1e-88
TAIR|locus:2147097 AT5G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 779 (279.3 bits), Expect = 6.5e-116, Sum P(3) = 6.5e-116
 Identities = 150/249 (60%), Positives = 180/249 (72%)

Query:   219 RTNKDGITLI-GDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQG 277
             RT  + +T   G+GK  T+I GDD+A  GTS+P TAT T+TGDGFIARDIG  N AGP+G
Sbjct:   241 RTVMEAVTAAHGNGKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRG 300

Query:   278 EQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCY 337
              QA+AL++ SD +V YRCSI+GYQDTLYA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C 
Sbjct:   301 HQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCN 360

Query:   338 LVLRRPKG--SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQY 395
             + LRRP G  +YN I ANGRTD  QNTGF+L +C+I   SD +PVKHKY+SYLGRPW++Y
Sbjct:   361 IFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKY 420

Query:   396 SRAVVMQXXXXXXXXXXGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVIG 454
             SRA+VM+          GW  W  +G     TLYF E+ N GP A  S RV W GFH IG
Sbjct:   421 SRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIG 480

Query:   455 PDVAVKFTV 463
              + A  F+V
Sbjct:   481 FEEANYFSV 489
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077710 PME61 "pectin methylesterase 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053728 ATPMEPCRD [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E989PME54_ARATH3, ., 1, ., 1, ., 1, 10.53570.78090.7382yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_6001687
annotation not avaliable (527 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-160
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-158
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-149
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-141
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-139
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-139
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-135
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-135
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-135
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-134
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-127
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-124
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-122
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-121
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-121
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-119
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-118
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-118
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-116
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-96
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-80
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-58
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-56
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-53
PLN02773317 PLN02773, PLN02773, pectinesterase 4e-52
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-52
PLN02671359 PLN02671, PLN02671, pectinesterase 8e-49
PLN02304379 PLN02304, PLN02304, probable pectinesterase 9e-48
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-45
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 2e-43
PLN02176340 PLN02176, PLN02176, putative pectinesterase 2e-36
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-31
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-14
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-13
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 3e-13
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 4e-08
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  652 bits (1683), Expect = 0.0
 Identities = 301/525 (57%), Positives = 352/525 (67%), Gaps = 81/525 (15%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVR-------------------- 48
           +++ W+L AS          YQN++Q+ECSFT++P LCV+                    
Sbjct: 4   MVIFWVLGASS---RNMPFAYQNEVQRECSFTKYPSLCVQTLRGLRHDGVDIVSVLVNKT 60

Query: 49  ---------------------------AVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKD 81
                                      +V+D CE +M MSLKRL +SLLAL+ S  KNK 
Sbjct: 61  ISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCERLMKMSLKRLRQSLLALKGSSRKNKH 120

Query: 82  DIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARAS 141
           DIQTWL AALTFQQ CKDS+           I +ISQKMD+LS+L SN LALVNRI    
Sbjct: 121 DIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSLALVNRITPN- 179

Query: 142 YPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAAS 201
            PK  T +R L EEQ  FP WVSA +RKLLQ   I AN +VA+DGTGNY TVSEAI+AA 
Sbjct: 180 -PKPKTKSRGLSEEQ-VFPRWVSAGDRKLLQGRTIKANAVVAKDGTGNYETVSEAITAAH 237

Query: 202 GNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDG 261
           GN                           GKY+T+I GDD+   GTS+P TATFTITGDG
Sbjct: 238 GNH--------------------------GKYSTVIVGDDSVTGGTSVPDTATFTITGDG 271

Query: 262 FIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGT 321
           FIARDIGF N AGP+GEQA+AL++ SDH+V YRCSIAGYQDTLYA ALRQFYR+ DIYGT
Sbjct: 272 FIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGT 331

Query: 322 IDFIFGNAAAVFQNCYLVLRRPKG-SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPV 380
           IDFIFGNAAAVFQNCYL LRRP G SYN I ANGR+DPGQNTGFSLQ+C+I   SD++PV
Sbjct: 332 IDFIFGNAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPV 391

Query: 381 KHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAEYANVGPGA 439
           KH Y+SYLGRPWK+YSRA+VM+S IDD+I+  GW+EWPG+G     +LYFAEY+N GPGA
Sbjct: 392 KHSYSSYLGRPWKKYSRAIVMESYIDDAIAERGWIEWPGSGSEVLKSLYFAEYSNYGPGA 451

Query: 440 ATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 484
            TS RV WPGFH+IG + A KFTV  FIAG SWLPSTGV F  GL
Sbjct: 452 RTSKRVTWPGFHLIGFEEATKFTVVKFIAGESWLPSTGVKFISGL 496

Length = 497
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.83
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.8
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.71
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.51
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.93
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.78
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.53
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.26
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.24
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.61
PLN02793443 Probable polygalacturonase 97.37
PLN02218431 polygalacturonase ADPG 97.31
PLN03003456 Probable polygalacturonase At3g15720 97.24
PRK10531422 acyl-CoA thioesterase; Provisional 97.14
PLN02682369 pectinesterase family protein 97.12
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.06
PLN02480343 Probable pectinesterase 97.05
PLN02773317 pectinesterase 96.85
PLN02176340 putative pectinesterase 96.83
PLN02497331 probable pectinesterase 96.76
PLN03010409 polygalacturonase 96.67
PLN02155394 polygalacturonase 96.63
PLN02634359 probable pectinesterase 96.56
PLN02665366 pectinesterase family protein 96.46
PLN02304379 probable pectinesterase 96.24
PLN02432293 putative pectinesterase 96.14
PLN02671359 pectinesterase 96.06
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.97
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.81
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.78
PLN02197588 pectinesterase 95.7
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.66
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.65
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.61
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.55
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.53
KOG1777 625 consensus Putative Zn-finger protein [General func 95.44
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.44
PLN02916502 pectinesterase family protein 95.39
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.3
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.26
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.18
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.16
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.16
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.15
smart00656190 Amb_all Amb_all domain. 94.99
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.97
PLN02301548 pectinesterase/pectinesterase inhibitor 94.9
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.9
PLN02314586 pectinesterase 94.52
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.32
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.96
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.26
smart00722146 CASH Domain present in carbohydrate binding protei 93.09
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.05
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.05
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 93.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 93.0
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 92.99
PLN02188404 polygalacturonase/glycoside hydrolase family prote 91.36
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 91.24
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.62
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 88.18
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 86.53
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 86.37
PLN02218431 polygalacturonase ADPG 86.11
PLN02793443 Probable polygalacturonase 84.73
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 81.26
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 80.3
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=4.7e-127  Score=1032.42  Aligned_cols=452  Identities=44%  Similarity=0.765  Sum_probs=413.9

Q ss_pred             hhhHHHhccCCCCCchhhHH--------------------------------------------------HHHHHHHHHH
Q 011489           29 YQNKIQKECSFTRFPILCVR--------------------------------------------------AVTDHCEEMM   58 (484)
Q Consensus        29 ~~~~i~~~C~~T~yp~~C~~--------------------------------------------------~al~dC~e~~   58 (484)
                      .+..|+++|++|+||++|++                                                  .||+||+|+|
T Consensus        58 ~~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r~k~AL~DClELl  137 (587)
T PLN02313         58 SHAVLKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETI  137 (587)
T ss_pred             HhHHHHHhccCCCChHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence            44589999999999999976                                                  5899999999


Q ss_pred             HHHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHhhcccchhhhhhcCCCCcchhhHhHHHHHHHHHHHHhhhhhhh
Q 011489           59 SMSLKRLEKSLLALQN-----SPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLAL  133 (484)
Q Consensus        59 ~da~d~L~~s~~~l~~-----~~~~~~~dv~twLSAAlt~~~TC~Dgf~e~g~~~~~~~~~~l~~~~~~~~kl~SnaLAl  133 (484)
                      ++++|+|++++++|..     ....+++|++||||||||||+||+|||++.+.  +..+++.|...+.++.||+||||||
T Consensus       138 ddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~--~~~vk~~m~~~l~n~teLtSNALAI  215 (587)
T PLN02313        138 DETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDA--DRKVRKALLKGQVHVEHMCSNALAM  215 (587)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCc--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999874     12356799999999999999999999986421  1268889999999999999999999


Q ss_pred             hhhhcccCCCC---C-------CCCCCCCCCc-----cCCCCcccchhhcccccCCCCCceEEEcCCCCCCcccHHHHHH
Q 011489          134 VNRIARASYPK---N-------STYNRRLDEE-----QGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAIS  198 (484)
Q Consensus       134 ~~~l~~~~~~~---~-------~~~~r~l~~~-----~~~fP~W~~~~~~~~l~~~~~~~~i~V~~dg~g~f~TIq~Al~  198 (484)
                      ++.+......+   .       .+..|+|++.     .++||+|++..+||||+...++++++|++||+|+|+|||+||+
T Consensus       216 v~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~P~W~~~~dr~ll~~~~~~~~~vVa~dGsG~f~TI~~Av~  295 (587)
T PLN02313        216 IKNMTETDIANFELRDKSSSFTNNNNRKLKEVTGDLDSEGWPTWLSVGDRRLLQGSTIKADATVAADGSGDFTTVAAAVA  295 (587)
T ss_pred             HhcccccccccccccccccccccccccccccccccccccCCCcCccccchhhhcccCCCCCEEECCCCCCCCccHHHHHH
Confidence            99987522211   0       0125677763     3589999999999999988899999999999999999999999


Q ss_pred             hcc---CCCeEEEEeCceEEeeee--ecCCCeEEEecCCCceEEecccCCCCCCCCCCceeEEEEcCcEEEEeEEEEcCC
Q 011489          199 AAS---GNRFVIYVKAGVYKEKIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTA  273 (484)
Q Consensus       199 aa~---~~~~~I~I~~G~Y~E~v~--~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~a~~~~~~~lti~Nt~  273 (484)
                      ++|   ..|++|+|++|+|+|+|.  ..|+||+|+|+|.++|||+++++..+|++|++||||.|.+++|+++||||+|++
T Consensus       296 a~p~~~~~r~vI~ik~GvY~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a~~itf~Nta  375 (587)
T PLN02313        296 AAPEKSNKRFVIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTA  375 (587)
T ss_pred             hccccCCceEEEEEeCceeEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEEEeeEEEeCC
Confidence            999   468999999999999999  477899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceeeeecCCcEEEEeceeccccceeeecccceEeeccEEecccceEecCCceeEEeeEEEEeCCC-CCcceEEe
Q 011489          274 GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPK-GSYNAITA  352 (484)
Q Consensus       274 g~~~~qAvAl~~~~d~~~~~nc~~~g~QDTL~~~~~r~~f~~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~-~~~~~itA  352 (484)
                      |+.++|||||++.+|+++||||+|+|||||||+|.+||||++|+|+|+||||||+|+++||+|+|+++++. ++.++|||
T Consensus       376 g~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~~r~~~~~~~~~iTA  455 (587)
T PLN02313        376 GPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTA  455 (587)
T ss_pred             CCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEccEEEEecCCCCCcceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999876 67899999


Q ss_pred             cCCCCCCCCeeEEEEccEEeeCCCCCCccccccEEEeccccCCCeeEEEccCCCccccCCCCccCCCCCCCC-CceEEEE
Q 011489          353 NGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAE  431 (484)
Q Consensus       353 ~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~t~~~~~i~p~GW~~w~~~~~~~-~~~~f~E  431 (484)
                      |||+++++++||||+||+|++++++.+.....++||||||++|+|+|||+|+|+++|+|+||.+|  +++++ ++++|+|
T Consensus       456 qgr~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~I~p~GW~~w--~~~~~~~t~~y~E  533 (587)
T PLN02313        456 QGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWSEW--SGSFALDTLTYRE  533 (587)
T ss_pred             cCCCCCCCCceEEEEecEEecCCccccccccchhhccCCCCCCccEEEEecccCCeEcCcccCcc--CCCCCCCceEEEE
Confidence            99999999999999999999999877666566799999999999999999999999999999999  78787 9999999


Q ss_pred             ecccCCCCCCCCcccCCCcccC-CHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 011489          432 YANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  484 (484)
Q Consensus       432 y~n~GpGa~~~~Rv~w~~~~~l-~~~ea~~yt~~~~i~g~~W~p~~~~~~~~~~  484 (484)
                      |+|+|||+++++||+|++++++ +++||.+||+.+||+|++|+|.+||||.+||
T Consensus       534 y~n~GpGa~~~~Rv~w~g~~~~~~~~ea~~ft~~~fi~g~~Wl~~tgvp~~~gl  587 (587)
T PLN02313        534 YLNRGGGAGTANRVKWKGFKVITSDTEAQKFTAGQFIGGGGWLASTGFPFSLSL  587 (587)
T ss_pred             eccccCCCCcCCCccCccccccCCHHHHHHhhHHhhcCCCCcCCCCCCCcCCCC
Confidence            9999999999999999999876 7889999999999999999999999999997

>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 4e-87
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 4e-79
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-20
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-19
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-13
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  318 bits (815), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/316 (53%), Positives = 207/316 (65%), Gaps = 8/316 (2%)
Query: 176 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 230
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60
Query: 231 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 290
           G Y T ITG  N   G++   +AT    G GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120
Query: 291 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNA 349
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P K   N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180
Query: 350 ITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQXXXXXXX 409
           +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+       
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240
Query: 410 XXXGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIA 468
              GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I 
Sbjct: 241 NPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299
Query: 469 GTSWLPSTGVIFDGGL 484
           G SWL STGV +  GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-152
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-151
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-118
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-117
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 6e-92
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 4e-16
1x91_A153 Invertase/pectin methylesterase inhibitor family p 8e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 1e-05
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  435 bits (1120), Expect = e-152
 Identities = 171/316 (54%), Positives = 212/316 (67%), Gaps = 8/316 (2%)

Query: 176 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 230
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 231 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 290
           G Y T ITG  N   G++   +AT    G GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 291 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNA 349
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P K   N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 350 ITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSI 409
           +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+S +   I
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 410 SSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIA 468
           + +GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I 
Sbjct: 241 NPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299

Query: 469 GTSWLPSTGVIFDGGL 484
           G SWL STGV +  GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.85
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.85
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.82
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.66
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.48
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.16
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.41
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.9
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.7
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.64
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.6
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.6
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.53
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.51
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.42
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.41
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.29
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.29
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.24
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.07
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.05
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.99
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.94
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.92
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.81
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.78
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.71
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.14
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.14
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.02
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.95
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.93
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.82
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.79
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.77
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.72
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.63
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.31
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.09
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 92.53
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 91.93
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.75
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 90.63
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 90.21
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 89.8
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 89.75
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 88.63
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 86.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 86.48
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 86.11
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 83.91
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 81.51
2inu_A410 Insulin fructotransferase; right-handed parallel b 81.22
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.5e-90  Score=702.23  Aligned_cols=306  Identities=55%  Similarity=0.947  Sum_probs=289.7

Q ss_pred             CceEEEcCCCCCCcccHHHHHHhcc---CCCeEEEEeCceEEeeeeec--CCCeEEEecCCCceEEecccCCCCCCCCCC
Q 011489          177 NANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPA  251 (484)
Q Consensus       177 ~~~i~V~~dg~g~f~TIq~Al~aa~---~~~~~I~I~~G~Y~E~v~~~--k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~  251 (484)
                      +++++|++||+|+|+|||+||++||   ..+++|+|+||+|+|+|.|.  |++|||+|+++++|+|+++.+..+|++|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            6789999999999999999999999   35689999999999999976  889999999999999999998888999999


Q ss_pred             ceeEEEEcCcEEEEeEEEEcCCCCCCCcceeeeecCCcEEEEeceeccccceeeecccceEeeccEEecccceEecCCce
Q 011489          252 TATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAA  331 (484)
Q Consensus       252 satv~v~a~~~~~~~lti~Nt~g~~~~qAvAl~~~~d~~~~~nc~~~g~QDTL~~~~~r~~f~~c~I~G~vDfIfG~~~a  331 (484)
                      ++||.|.+++|+++||||+|++++.++||+||++.+|+++|+||+|+|+|||||++++||||++|+|+|+||||||++++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeEEEEeCCC-CCcceEEecCCCCCCCCeeEEEEccEEeeCCCCCCccccccEEEeccccCCCeeEEEccCCCcccc
Q 011489          332 VFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSIS  410 (484)
Q Consensus       332 ~f~~c~i~~~~~~-~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~t~~~~~i~  410 (484)
                      +||+|+|+++++. ++.++||||+|+++++++||||+||+|++++++.++....++||||||++|+|+||++|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            9999999999865 678999999999999999999999999999877555445689999999999999999999999999


Q ss_pred             CCCCccCCCCCCCC-CceEEEEecccCCCCCCCCcccCCCcccC-CHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 011489          411 SSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  484 (484)
Q Consensus       411 p~GW~~w~~~~~~~-~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~l-~~~ea~~yt~~~~i~g~~W~p~~~~~~~~~~  484 (484)
                      |+||.+|  +++++ ++++|+||+|+|||+++++||+|+++++| +++||++|++.+||+|++|+|.++|||..||
T Consensus       242 p~GW~~w--~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          242 PAGWAEW--DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             TTCSCCS--STTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             ccccccC--CCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            9999999  77777 89999999999999999999999998877 5799999999999999889999999999997
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-129
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-86
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 8e-15
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 8e-10
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 4e-04
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.004
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  375 bits (965), Expect = e-129
 Identities = 162/320 (50%), Positives = 206/320 (64%), Gaps = 8/320 (2%)

Query: 172 QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKDG--IT 226
           ++  +  NV+VA DG+G+Y+TVSEA++AA   S  R+VI +KAGVY+E +   K    I 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 227 LIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVA 286
            +GDG+ +TIIT   N + G++   +AT    G GF+ARDI F NTAG    QA+AL V 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 287 SDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KG 345
           SD + FYRC I  YQD+LY  + RQF+ +  I GT+DFIFGNAA V Q+C +  RRP  G
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 346 SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSI 405
             N +TA GRTDP QNTG  +Q  +I A SD  PV+  + +YLGRPWK+YSR VVMQSSI
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 406 DDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVA 464
            + I+ +GW  W G     +TLY+ EY N G GAATS RV W GF VI     A  FT  
Sbjct: 241 TNVINPAGWFPWDGNFAL-DTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 465 NFIAGTSWLPSTGVIFDGGL 484
           +FIAG SWL +T   F  GL
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.81
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.77
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.16
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.83
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.1
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.6
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.56
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 97.29
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.18
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.16
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.9
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.84
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.79
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.07
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.92
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.85
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.76
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.32
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.49
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 90.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 88.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 88.63
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.12
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 84.98
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 83.57
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.3e-93  Score=720.19  Aligned_cols=309  Identities=52%  Similarity=0.902  Sum_probs=292.8

Q ss_pred             CCCCceEEEcCCCCCCcccHHHHHHhcc---CCCeEEEEeCceEEeeeee--cCCCeEEEecCCCceEEecccCCCCCCC
Q 011489          174 PRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTS  248 (484)
Q Consensus       174 ~~~~~~i~V~~dg~g~f~TIq~Al~aa~---~~~~~I~I~~G~Y~E~v~~--~k~~Itl~G~g~~~tiI~~~~~~~~g~~  248 (484)
                      ..++++++|++||+|+|+|||+||+++|   ..+++|+|+||+|+|+|.|  +|++|||+|+|++.|+|+++.+..++.+
T Consensus         3 ~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~   82 (319)
T d1gq8a_           3 STVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGST   82 (319)
T ss_dssp             CSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCc
Confidence            3578999999999999999999999999   4689999999999999995  8899999999999999999999888999


Q ss_pred             CCCceeEEEEcCcEEEEeEEEEcCCCCCCCcceeeeecCCcEEEEeceeccccceeeecccceEeeccEEecccceEecC
Q 011489          249 MPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGN  328 (484)
Q Consensus       249 t~~satv~v~a~~~~~~~lti~Nt~g~~~~qAvAl~~~~d~~~~~nc~~~g~QDTL~~~~~r~~f~~c~I~G~vDfIfG~  328 (484)
                      |+.++||.|.+++|+++||||+|++++.++|||||++.+||++|+||+|+|||||||++.+||||++|+|+|+||||||+
T Consensus        83 t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~  162 (319)
T d1gq8a_          83 TFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGN  162 (319)
T ss_dssp             TGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEES
T ss_pred             cccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecC
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeeEEEEeCCC-CCcceEEecCCCCCCCCeeEEEEccEEeeCCCCCCccccccEEEeccccCCCeeEEEccCCCc
Q 011489          329 AAAVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDD  407 (484)
Q Consensus       329 ~~a~f~~c~i~~~~~~-~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~t~~~~  407 (484)
                      ++++||+|+|+++++. ++.++||||+|+++.+++||||++|+|+++++..+.....++||||||++++||||++|+|++
T Consensus       163 ~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~  242 (319)
T d1gq8a_         163 AAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITN  242 (319)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccccc
Confidence            9999999999998765 667899999999999999999999999999887666656789999999999999999999999


Q ss_pred             cccCCCCccCCCCCCCC-CceEEEEecccCCCCCCCCcccCCCccc-CCHHHHhccchhccccCCCCCCCCCCCCCCCC
Q 011489          408 SISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHV-IGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  484 (484)
Q Consensus       408 ~i~p~GW~~w~~~~~~~-~~~~f~Ey~n~GpGa~~~~Rv~w~~~~~-l~~~ea~~yt~~~~i~g~~W~p~~~~~~~~~~  484 (484)
                      +|+|+||.+|  +++.. ++++|+||+|+|||+++++||+|+++++ |+++||++|+..+||+|++|+|.++|||..||
T Consensus       243 ~I~p~GW~~w--~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         243 VINPAGWFPW--DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TBCTTCCCCS--STTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccc--CCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999  77666 8999999999999999999999998764 69999999999999999889999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure