BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011490
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/513 (27%), Positives = 223/513 (43%), Gaps = 68/513 (13%)
Query: 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQ 60
M + A + H ++ P+ QGH+ P+ +A+LL G +T V T N R + RG +
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRL--LKSRGPK 58
Query: 61 SGLRIQVIEF------YFPCQEVG-----LPEGCESWDK---LPSMALLPKFFAAIEMLR 106
+ F P + G +P C+S K P LL + + +
Sbjct: 59 AFDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNV-- 116
Query: 107 LPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVXXXXXXXXXXXXXXXXVSKAH 166
P +CL+SD C+ +T+ +A +F +P ++
Sbjct: 117 -----------PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVER 165
Query: 167 ESVSSDSEYFL-----------VPGLP-----DRVEITKAQLPEILKLKSFGEPILAAEM 210
+ E +L +PGL D V+ + P + L+ F E +
Sbjct: 166 GIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIE-VADRVN 224
Query: 211 ASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKE--DIDKLERGDKTS-NDGS 267
+++N+F E+E + + ++ +GP+ K+ I +L+ D + +
Sbjct: 225 KDTTILLNTFNELESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDT 283
Query: 268 GCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDW 327
CL WL+S +PGS VYV GS + QL+E GL KK F+W+IRP G
Sbjct: 284 ECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGG--SV 341
Query: 328 LLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF 387
+ + +F I RGL I W PQ +L+HP+IGGFLTHCGWNS E++ G+PM+ WPFF
Sbjct: 342 IFSSEFTNEIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF 400
Query: 388 ADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXX 447
ADQ + + + IG+ I VK+E++ K IN ++
Sbjct: 401 ADQPTDCRFICNEWEIGMEIDTN--------------VKREELAKLINEVIAGDKGKKMK 446
Query: 448 XXXXXXXXXTAKTAIEEGGSSYLNIKLLIKDIL 480
A+ GG SY+N+ +IKD+L
Sbjct: 447 QKAMELKKK-AEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 212/468 (45%), Gaps = 87/468 (18%)
Query: 10 HFILFPFLAQGHMIPMIDIA-RLLAQHGALVTIVTT---PMNAARFQNVIERGIQSGLRI 65
H + P GH+IP+++ A RL+ HG VT V P + A +R + L
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKA------QRTVLDSLPS 61
Query: 66 QVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLIS 125
+ + P ++ S ++ S L + E LR ++ F E P+ L+
Sbjct: 62 SISSVFLPPVDL---TDLSSSTRIESRISLTVTRSNPE-LRKVFDS-FVEGGRLPTALVV 116
Query: 126 DVCLPWTVSSACKFNVPRIVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYFL-VPGLPDR 184
D+ A +F+VP + + + ++ +FL +P L +
Sbjct: 117 DLFGTDAFDVAVEFHVPPYIF-------------------YPTTANVLSFFLHLPKLDET 157
Query: 185 VEITKAQLPEILKL--------KSFGEPILAAEMASY--------------GVIVNSFEE 222
V +L E L L K F +P + +Y G++VN+F E
Sbjct: 158 VSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFE 217
Query: 223 MEPAYVEEYKNARDGK--VWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGS 280
+EP ++ + K V+ VGP+ K++ + E S CLKWLD+ GS
Sbjct: 218 LEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEE--------SECLKWLDNQPLGS 269
Query: 281 AVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGD--------QAKGLEDWL--LA 330
+YV GS + QL EL LGL +++ F+WVIR + D L L
Sbjct: 270 VLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLP 329
Query: 331 EKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 390
F ER + RG +I WAPQ +L+HP+ GGFLTHCGWNS LE+V +G+P++ WP +A+Q
Sbjct: 330 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQ 389
Query: 391 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 438
N L+ + +R A RP + D G+ V++E+V + + LM
Sbjct: 390 KMNAVLLSEDIR-----AALRPRAGDD----GL-VRREEVARVVKGLM 427
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 145/309 (46%), Gaps = 44/309 (14%)
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYG--------VIVNSFEEMEPAYV 228
++PG P E+ + LPE + +K P A + G V +NSF + P +
Sbjct: 178 VLPGFP---ELKASDLPEGV-IKDIDVP-FATMLHKMGLELPRANAVAINSFATIHP-LI 231
Query: 229 EEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGS 288
E N++ + VGP +L + + +D GCL+WLD + S VY+ GS
Sbjct: 232 ENELNSKFKLLLNVGPFNLTTPQ---------RKVSDEHGCLEWLDQHENSSVVYISFGS 282
Query: 289 LCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWA 348
+ +L L LE PFIW R + K L + F ER + +G ++ WA
Sbjct: 283 VVTPPPHELTALAESLEECGFPFIWSFRGDPKEK------LPKGFLERTKTKGKIV-AWA 335
Query: 349 PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 408
PQV IL H ++G FLTH GWNSVLE + G+PM++ PFF DQ N L VL IGV +
Sbjct: 336 PQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV- 394
Query: 409 AERPPSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGGSS 468
NGV + KE +KKA+ + M K A+E+ G+S
Sbjct: 395 -----------DNGV-LTKESIKKALELTMSSEKGGIMRQKIVKLKESAFK-AVEQNGTS 441
Query: 469 YLNIKLLIK 477
++ LI+
Sbjct: 442 AMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 111/194 (57%), Gaps = 17/194 (8%)
Query: 214 GVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWL 273
V +NSFEE++ + + K ++ +GP +L + + +GCL+WL
Sbjct: 216 AVFINSFEELDDSLTNDLK-SKLKTYLNIGPFNLITPPPV---------VPNTTGCLQWL 265
Query: 274 DSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKF 333
+P S VY+ G++ +++ L LEA++ PFIW +R D+A+ L E F
Sbjct: 266 KERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR--DKAR----VHLPEGF 319
Query: 334 EERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCN 393
E+ G G+++ WAPQ +L+H A+G F+THCGWNS+ E+V+ G+P++ PFF DQ N
Sbjct: 320 LEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 394 EKLVVQVLRIGVTI 407
++V VL IGV I
Sbjct: 379 GRMVEDVLEIGVRI 392
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 126/493 (25%), Positives = 218/493 (44%), Gaps = 51/493 (10%)
Query: 3 SQAGSQLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN-VIERGI 59
S I P GH+ ++ A+LL H +T+ F + I+ +
Sbjct: 4 SDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL 63
Query: 60 QSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPK 119
S +IQ+I+ EV P + K P +L + I ++ ++T+ K
Sbjct: 64 ASQPQIQLIDL----PEVEPPP--QELLKSPEFYILTFLESLIPHVKATIKTILSN---K 114
Query: 120 PSCLISDVCLPWTVSSACKFNVPR---IVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYF 176
L+ D + +F +P + + + + D +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMA-----SYGVIVNSFEEMEPAYVEEY 231
+PG+ ++V LP+ K G I ++A + G+IVN+F ++E + ++
Sbjct: 175 NIPGISNQV--PSNVLPDACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 232 KNARDG--KVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSL 289
+ + ++ VGP+ + KL D+ +D LKWLD S V++C GS+
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKL---DQAQHDL--ILKWLDEQPDKSVVFLCFGSM 286
Query: 290 CDS-STRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEE--RIEGRGLLIRG 346
S Q+ E+ LGL+ + F+W + E + E F E +EG+G+ I G
Sbjct: 287 GVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGM-ICG 338
Query: 347 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 406
WAPQV +L+H AIGGF++HCGWNS+LE++ G+P++TWP +A+Q N +V+ GV
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVG 396
Query: 407 IGAERPPSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGG 466
+G D + V E+++K + LM ++ A+ +GG
Sbjct: 397 LGLR-----VDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGG 448
Query: 467 SSYLNIKLLIKDI 479
SS +++ LI DI
Sbjct: 449 SSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 126/493 (25%), Positives = 218/493 (44%), Gaps = 51/493 (10%)
Query: 3 SQAGSQLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN-VIERGI 59
S I P GH+ ++ A+LL H +T+ F + I+ +
Sbjct: 4 SDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVL 63
Query: 60 QSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPK 119
S +IQ+I+ EV P + K P +L + I ++ ++T+ K
Sbjct: 64 ASQPQIQLIDL----PEVEPPP--QELLKSPEFYILTFLESLIPHVKATIKTILSN---K 114
Query: 120 PSCLISDVCLPWTVSSACKFNVPR---IVXXXXXXXXXXXXXXXXVSKAHESVSSDSEYF 176
L+ D + +F +P + + + + D +
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL 174
Query: 177 LVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMA-----SYGVIVNSFEEMEPAYVEEY 231
+PG+ ++V LP+ K G I ++A + G+IVN+F ++E + ++
Sbjct: 175 NIPGISNQV--PSNVLPDACFNKD-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 232 KNARDG--KVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSL 289
+ + ++ VGP+ + KL D+ +D LKWLD S V++C GS+
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKL---DQAQHDL--ILKWLDEQPDKSVVFLCFGSM 286
Query: 290 CDS-STRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEE--RIEGRGLLIRG 346
S Q+ E+ LGL+ + F+W + E + E F E +EG+G+ I G
Sbjct: 287 GVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGM-ICG 338
Query: 347 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 406
WAPQV +L+H AIGGF++HCGWNS+LE++ G+P++TWP +A+Q N +V+ GV
Sbjct: 339 WAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK--EWGVG 396
Query: 407 IGAERPPSLADEERNGVPVKKEDVKKAINMLMXXXXXXXXXXXXXXXXXXTAKTAIEEGG 466
+G D + V E+++K + LM ++ A+ +GG
Sbjct: 397 LGLR-----VDYRKGSDVVAAEEIEKGLKDLM---DKDSIVHKKVQEMKEMSRNAVVDGG 448
Query: 467 SSYLNIKLLIKDI 479
SS +++ LI DI
Sbjct: 449 SSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 347 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCN 393
W PQ +L HP F+TH G N + EA+ +G+P V P FADQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 344 IRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV 400
+ W PQ+ IL+ + F+TH G S +EA+SN +PMV P A+Q N + +V++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 344 IRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLV 397
+ W PQ+ IL + F+TH G E ++ PM+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 293 STRQLIELGLGLEATKKPFIWVIRPG-DQAKGLE-DWLLAEKFEERIEGRG-----LLIR 345
+ R L+ L LG + + V+R D GL+ D L+A + G G + +
Sbjct: 240 TARPLVYLTLGTSSGGT--VEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLE 297
Query: 346 GWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 391
W PQ +L H + + H G + L A+ G+P +++P+ D F
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 347 WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 390
W P +L+H LTH +VLEA + G+P+V P FA +
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48
Q H + GH+ P + + LA+ G +T VTTP+ A
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFA 44
>pdb|4EOG|A Chain A, Crystal Structure Of Csx1 Of Pyrococcus Furiosus
Length = 480
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 368 WNSVLEAVSNGLPMVTWPFF-----ADQFCNEKLVVQVLRIGVTIG 408
WN+ + +V+NG P+V F+ + + N+KL + +G+ +G
Sbjct: 242 WNAFISSVANGFPLVFASFYPNIRDVEDYLNKKL--EEFLVGIEVG 285
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 175 YFLVP-GLPDRVEITKAQLPEILK-LKSFGEPILAAEMASYGVIVNSFE---EMEPAYVE 229
Y + P G+ D + +LP+ +K LK F PIL E+ Y V + + +P +
Sbjct: 473 YNIYPHGITDVRPLYSRRLPKGVKHLKDF--PILPGEIFKYKWTVTVEDGPTKSDPRCLT 530
Query: 230 EYKNA-----RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCL 270
Y ++ RD +GP+ +C KE +D +RG++ +D +
Sbjct: 531 RYYSSFVNMERDLASGLIGPLLICYKESVD--QRGNQIMSDKRNVI 574
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 175 YFLVP-GLPDRVEITKAQLPEILK-LKSFGEPILAAEMASYGVIVNSFE---EMEPAYVE 229
Y + P G+ D + +LP+ +K LK F PIL E+ Y V + + +P +
Sbjct: 474 YNIYPHGITDVRPLYSRRLPKGVKHLKDF--PILPGEIFKYKWTVTVEDGPTKSDPRCLT 531
Query: 230 EYKNA-----RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCL 270
Y ++ RD +GP+ +C KE +D +RG++ +D +
Sbjct: 532 RYYSSFVNMERDLASGLIGPLLICYKESVD--QRGNQIMSDKRNVI 575
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,426,706
Number of Sequences: 62578
Number of extensions: 538651
Number of successful extensions: 1113
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 18
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)