Query 011490
Match_columns 484
No_of_seqs 144 out of 1416
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 9.1E-72 2E-76 556.4 47.5 475 8-482 8-487 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.1E-69 6.7E-74 539.6 45.7 458 1-482 1-472 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 1.4E-67 3E-72 532.5 46.6 465 8-481 5-480 (482)
4 PLN02992 coniferyl-alcohol glu 100.0 2.5E-67 5.5E-72 522.4 44.9 434 8-481 5-469 (481)
5 PLN02208 glycosyltransferase f 100.0 8.3E-67 1.8E-71 517.2 42.8 431 8-482 4-440 (442)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.7E-66 3.6E-71 516.3 44.1 434 1-481 1-450 (451)
7 PLN02764 glycosyltransferase f 100.0 2.9E-66 6.3E-71 510.2 44.4 433 8-484 5-448 (453)
8 PLN03015 UDP-glucosyl transfer 100.0 3.1E-66 6.7E-71 511.5 43.8 436 8-479 3-466 (470)
9 PLN02555 limonoid glucosyltran 100.0 9.6E-66 2.1E-70 512.5 45.1 451 1-481 1-469 (480)
10 PLN00414 glycosyltransferase f 100.0 7.1E-66 1.5E-70 511.1 43.3 433 8-482 4-441 (446)
11 PLN00164 glucosyltransferase; 100.0 1.2E-65 2.7E-70 515.4 45.2 443 8-482 3-474 (480)
12 PLN02210 UDP-glucosyl transfer 100.0 9.2E-66 2E-70 513.1 43.7 440 1-480 1-454 (456)
13 PLN02173 UDP-glucosyl transfer 100.0 4.8E-65 1E-69 503.4 43.5 426 8-480 5-447 (449)
14 PLN03004 UDP-glycosyltransfera 100.0 3E-65 6.4E-70 505.2 39.8 430 8-470 3-450 (451)
15 PLN02670 transferase, transfer 100.0 1.1E-64 2.4E-69 503.1 43.6 448 8-482 6-466 (472)
16 PLN02207 UDP-glycosyltransfera 100.0 3.1E-64 6.7E-69 499.4 43.2 446 8-482 3-466 (468)
17 PLN02562 UDP-glycosyltransfera 100.0 9.3E-64 2E-68 498.3 43.6 421 8-479 6-447 (448)
18 PLN02448 UDP-glycosyltransfera 100.0 2.1E-63 4.6E-68 499.6 44.0 434 8-481 10-457 (459)
19 PLN02152 indole-3-acetate beta 100.0 4.4E-63 9.5E-68 490.2 43.2 433 8-479 3-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 4.1E-63 9E-68 499.2 42.8 447 8-481 2-478 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 2.1E-62 4.6E-67 493.3 42.6 449 8-482 3-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.3E-47 5E-52 385.9 29.0 385 8-461 20-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.6E-48 7.7E-53 398.8 5.3 382 10-461 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4.9E-44 1.1E-48 356.7 29.9 367 14-461 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.4E-43 7.3E-48 352.3 22.5 371 9-461 1-388 (401)
26 COG1819 Glycosyl transferases, 100.0 6.5E-41 1.4E-45 330.1 23.6 387 8-480 1-399 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.5E-40 5.4E-45 340.6 19.6 393 8-459 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 7.6E-28 1.6E-32 234.4 25.0 322 10-453 3-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 4E-25 8.7E-30 212.5 25.7 326 9-455 1-339 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.5E-24 3.2E-29 210.5 23.9 306 9-437 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 2E-21 4.4E-26 188.1 24.0 304 10-441 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 3.1E-19 6.7E-24 176.0 27.4 324 9-454 2-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.8E-18 8.2E-23 167.9 26.1 328 10-454 1-338 (350)
34 TIGR01133 murG undecaprenyldip 99.8 7.4E-17 1.6E-21 158.6 25.5 320 9-452 1-333 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 3.2E-16 6.9E-21 155.1 23.4 351 9-476 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.7 1.6E-14 3.4E-19 143.7 26.0 146 278-453 201-351 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 2.8E-15 6E-20 141.6 18.5 104 280-396 171-278 (279)
38 PRK00025 lpxB lipid-A-disaccha 99.7 3.1E-14 6.7E-19 141.7 24.1 332 9-458 2-359 (380)
39 PRK13608 diacylglycerol glucos 99.6 1.7E-14 3.6E-19 143.6 18.4 148 278-455 201-353 (391)
40 TIGR03492 conserved hypothetic 99.6 4.8E-13 1E-17 132.6 25.0 142 279-441 205-365 (396)
41 COG4671 Predicted glycosyl tra 99.6 5.2E-13 1.1E-17 122.8 21.0 337 8-441 9-366 (400)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 5.2E-16 1.1E-20 135.5 -3.6 136 281-441 1-145 (167)
43 PLN02605 monogalactosyldiacylg 99.5 3.2E-12 6.8E-17 127.1 19.7 145 277-452 204-360 (382)
44 PF03033 Glyco_transf_28: Glyc 99.4 1.1E-13 2.4E-18 116.9 3.6 125 11-150 1-131 (139)
45 cd03814 GT1_like_2 This family 99.4 2.8E-10 6.1E-15 111.9 26.1 141 281-455 198-347 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 9.4E-10 2E-14 112.4 28.4 142 281-456 264-416 (465)
47 cd03823 GT1_ExpE7_like This fa 99.3 4.9E-09 1.1E-13 102.8 28.3 141 280-453 191-342 (359)
48 cd03794 GT1_wbuB_like This fam 99.3 3.6E-09 7.8E-14 104.7 27.2 149 279-456 219-381 (394)
49 COG3980 spsG Spore coat polysa 99.3 3.6E-10 7.7E-15 101.3 17.2 141 281-453 160-302 (318)
50 cd03818 GT1_ExpC_like This fam 99.2 2E-08 4.3E-13 100.6 29.5 97 339-457 280-383 (396)
51 cd04962 GT1_like_5 This family 99.2 1.8E-08 3.8E-13 99.9 28.1 94 339-454 252-350 (371)
52 cd03817 GT1_UGDG_like This fam 99.2 2.2E-08 4.7E-13 98.6 28.1 97 339-458 258-361 (374)
53 cd03816 GT1_ALG1_like This fam 99.2 4.4E-08 9.6E-13 98.5 30.0 94 338-455 292-399 (415)
54 cd03800 GT1_Sucrose_synthase T 99.2 1.5E-08 3.3E-13 101.2 26.6 148 281-455 221-383 (398)
55 cd03808 GT1_cap1E_like This fa 99.1 5.3E-08 1.2E-12 95.1 27.7 329 10-454 1-343 (359)
56 cd03801 GT1_YqgM_like This fam 99.1 7.1E-08 1.5E-12 94.4 28.4 93 338-452 254-353 (374)
57 PRK10307 putative glycosyl tra 99.1 3.7E-07 8.1E-12 91.9 33.6 165 281-481 230-407 (412)
58 PF04007 DUF354: Protein of un 99.1 5E-08 1.1E-12 93.4 25.6 302 9-438 1-308 (335)
59 cd03820 GT1_amsD_like This fam 99.1 7.8E-08 1.7E-12 93.4 26.7 98 339-458 234-337 (348)
60 cd03805 GT1_ALG2_like This fam 99.1 3.2E-07 7E-12 91.6 31.1 94 339-455 279-379 (392)
61 cd03795 GT1_like_4 This family 99.1 7.1E-08 1.5E-12 94.8 25.9 149 281-457 192-349 (357)
62 PRK05749 3-deoxy-D-manno-octul 99.1 8.5E-08 1.8E-12 97.0 26.7 87 351-457 314-405 (425)
63 TIGR03449 mycothiol_MshA UDP-N 99.0 3.1E-07 6.7E-12 92.3 28.8 96 339-456 282-384 (405)
64 cd03798 GT1_wlbH_like This fam 99.0 8.7E-07 1.9E-11 86.9 31.2 82 339-442 258-346 (377)
65 PRK14089 ipid-A-disaccharide s 99.0 8.1E-08 1.8E-12 92.7 21.2 153 280-458 168-332 (347)
66 cd03822 GT1_ecORF704_like This 99.0 5.9E-07 1.3E-11 88.3 27.6 96 339-457 246-351 (366)
67 TIGR00236 wecB UDP-N-acetylglu 99.0 8.7E-08 1.9E-12 94.8 21.5 129 280-441 198-335 (365)
68 cd03819 GT1_WavL_like This fam 99.0 8E-07 1.7E-11 87.3 28.3 154 280-457 185-348 (355)
69 cd03799 GT1_amsK_like This is 98.9 8.7E-07 1.9E-11 87.0 27.5 95 339-455 235-342 (355)
70 cd03825 GT1_wcfI_like This fam 98.9 6.3E-07 1.4E-11 88.3 26.1 95 339-455 243-345 (365)
71 cd03821 GT1_Bme6_like This fam 98.9 3.4E-06 7.5E-11 82.8 30.3 92 339-454 261-359 (375)
72 cd03811 GT1_WabH_like This fam 98.9 5.3E-07 1.2E-11 87.7 23.3 140 280-449 189-341 (353)
73 PRK01021 lpxB lipid-A-disaccha 98.9 1.2E-06 2.6E-11 88.8 25.2 275 104-458 297-589 (608)
74 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 2.2E-07 4.7E-12 91.9 19.9 133 279-441 198-338 (363)
75 TIGR02472 sucr_P_syn_N sucrose 98.8 5.5E-06 1.2E-10 84.0 28.7 93 339-453 316-419 (439)
76 PRK09922 UDP-D-galactose:(gluc 98.8 1.6E-06 3.5E-11 85.6 24.2 149 281-457 181-343 (359)
77 cd03807 GT1_WbnK_like This fam 98.8 2.5E-05 5.5E-10 76.3 31.7 92 339-454 250-346 (365)
78 TIGR03087 stp1 sugar transfera 98.8 4E-06 8.7E-11 83.9 26.1 94 338-455 278-377 (397)
79 cd03802 GT1_AviGT4_like This f 98.7 1.1E-05 2.4E-10 78.4 26.7 127 282-440 173-308 (335)
80 cd05844 GT1_like_7 Glycosyltra 98.7 6E-06 1.3E-10 81.6 25.1 95 339-455 244-351 (367)
81 cd03796 GT1_PIG-A_like This fa 98.7 2.3E-05 5E-10 78.5 29.4 80 339-442 249-335 (398)
82 TIGR02468 sucrsPsyn_pln sucros 98.7 2.9E-05 6.3E-10 84.0 30.1 96 339-456 547-653 (1050)
83 TIGR03088 stp2 sugar transfera 98.7 1.5E-05 3.3E-10 79.0 26.6 93 340-454 255-352 (374)
84 TIGR02149 glgA_Coryne glycogen 98.7 2E-05 4.4E-10 78.5 27.6 151 281-455 202-367 (388)
85 cd04955 GT1_like_6 This family 98.7 2.2E-05 4.8E-10 77.3 27.4 137 283-453 196-343 (363)
86 PF02684 LpxB: Lipid-A-disacch 98.7 5.7E-06 1.2E-10 80.4 22.4 277 104-469 69-365 (373)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.7 0.0001 2.2E-09 71.1 29.4 324 11-461 51-407 (419)
88 cd04951 GT1_WbdM_like This fam 98.6 1.2E-05 2.7E-10 78.9 23.9 129 281-441 189-327 (360)
89 cd03812 GT1_CapH_like This fam 98.6 8.5E-06 1.9E-10 80.1 22.6 139 281-448 193-339 (358)
90 cd03804 GT1_wbaZ_like This fam 98.6 7.4E-06 1.6E-10 80.5 19.8 136 282-452 197-339 (351)
91 cd03809 GT1_mtfB_like This fam 98.5 2.6E-05 5.7E-10 76.5 22.1 96 338-457 251-353 (365)
92 PLN02949 transferase, transfer 98.5 0.00029 6.2E-09 71.6 28.7 99 339-459 334-442 (463)
93 cd03792 GT1_Trehalose_phosphor 98.5 0.0002 4.3E-09 71.1 27.2 111 339-480 251-370 (372)
94 COG0763 LpxB Lipid A disacchar 98.5 4.3E-05 9.4E-10 72.8 20.8 225 219-479 142-379 (381)
95 PLN02275 transferase, transfer 98.4 0.00075 1.6E-08 66.9 30.8 77 338-438 284-371 (371)
96 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 6.1E-05 1.3E-09 74.2 22.3 319 10-439 2-338 (365)
97 cd03806 GT1_ALG11_like This fa 98.4 0.00018 3.8E-09 72.5 24.6 96 339-457 304-410 (419)
98 KOG3349 Predicted glycosyltran 98.4 1.4E-06 3.1E-11 70.6 7.5 117 281-407 5-132 (170)
99 PRK15179 Vi polysaccharide bio 98.3 0.0011 2.3E-08 70.3 29.9 97 339-455 573-674 (694)
100 TIGR02470 sucr_synth sucrose s 98.3 0.0011 2.3E-08 70.5 28.0 93 339-453 618-726 (784)
101 PF02350 Epimerase_2: UDP-N-ac 98.2 2.8E-06 6E-11 82.8 7.1 253 99-440 49-318 (346)
102 PLN02846 digalactosyldiacylgly 98.2 0.00074 1.6E-08 67.9 24.0 74 343-441 287-364 (462)
103 PLN00142 sucrose synthase 98.2 0.00039 8.5E-09 73.8 22.4 72 362-453 670-749 (815)
104 PRK00654 glgA glycogen synthas 98.2 0.0022 4.7E-08 65.7 27.5 131 281-439 283-427 (466)
105 PLN02316 synthase/transferase 98.1 0.0028 6.1E-08 69.2 28.7 120 340-482 900-1034(1036)
106 cd03791 GT1_Glycogen_synthase_ 98.1 0.0031 6.6E-08 64.8 27.3 132 281-439 297-441 (476)
107 TIGR02095 glgA glycogen/starch 98.1 0.0046 9.9E-08 63.5 28.3 129 281-439 292-436 (473)
108 cd04949 GT1_gtfA_like This fam 98.1 0.00033 7.1E-09 69.4 19.3 102 339-459 260-364 (372)
109 cd04950 GT1_like_1 Glycosyltra 97.9 0.014 2.9E-07 58.0 27.7 79 339-441 253-341 (373)
110 cd03813 GT1_like_3 This family 97.9 0.0024 5.2E-08 65.6 22.9 96 339-456 353-458 (475)
111 COG1817 Uncharacterized protei 97.8 0.0045 9.9E-08 57.2 19.9 116 10-153 2-117 (346)
112 cd04946 GT1_AmsK_like This fam 97.8 0.00071 1.5E-08 68.0 16.2 100 339-457 288-394 (407)
113 PRK15427 colanic acid biosynth 97.8 0.00078 1.7E-08 67.6 16.2 113 339-480 278-404 (406)
114 COG5017 Uncharacterized conser 97.8 0.00018 3.9E-09 57.5 8.7 112 282-410 2-124 (161)
115 TIGR02918 accessory Sec system 97.8 0.019 4.1E-07 59.0 26.0 155 281-459 320-485 (500)
116 PF00534 Glycos_transf_1: Glyc 97.7 0.00023 5.1E-09 62.0 9.0 146 279-453 14-171 (172)
117 cd01635 Glycosyltransferase_GT 97.6 0.0049 1.1E-07 55.7 17.7 50 339-390 160-217 (229)
118 PF13844 Glyco_transf_41: Glyc 97.6 0.0015 3.2E-08 65.2 13.8 150 278-450 283-440 (468)
119 COG0381 WecB UDP-N-acetylgluco 97.5 0.015 3.3E-07 56.0 19.1 323 8-441 3-342 (383)
120 PRK15484 lipopolysaccharide 1, 97.4 0.013 2.8E-07 58.3 17.9 113 339-480 256-376 (380)
121 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0013 2.7E-08 54.7 5.8 80 339-440 52-135 (135)
122 PF13477 Glyco_trans_4_2: Glyc 96.9 0.0097 2.1E-07 49.6 10.0 100 10-145 1-104 (139)
123 PRK09814 beta-1,6-galactofuran 96.8 0.011 2.3E-07 57.7 10.6 110 339-477 206-331 (333)
124 TIGR02193 heptsyl_trn_I lipopo 96.4 0.18 4E-06 48.7 16.2 44 10-53 1-46 (319)
125 PRK10017 colanic acid biosynth 96.3 0.12 2.7E-06 51.7 15.1 178 270-480 225-423 (426)
126 PRK10422 lipopolysaccharide co 96.3 0.3 6.4E-06 48.0 17.6 110 1-145 1-113 (352)
127 PRK10125 putative glycosyl tra 96.3 1.4 3.1E-05 44.1 27.0 113 283-434 244-365 (405)
128 cd03789 GT1_LPS_heptosyltransf 96.0 0.92 2E-05 42.8 18.7 44 10-53 1-46 (279)
129 PLN02501 digalactosyldiacylgly 96.0 1.8 4E-05 45.6 21.4 76 341-441 602-682 (794)
130 COG3914 Spy Predicted O-linked 95.9 0.16 3.5E-06 51.2 13.2 121 277-407 427-560 (620)
131 PF06258 Mito_fiss_Elm1: Mitoc 95.9 1.7 3.7E-05 41.6 20.0 60 349-410 221-283 (311)
132 PF06722 DUF1205: Protein of u 95.9 0.0093 2E-07 46.1 3.6 55 265-319 26-85 (97)
133 PRK14098 glycogen synthase; Pr 95.8 0.18 4E-06 51.8 13.9 82 339-438 361-449 (489)
134 TIGR02201 heptsyl_trn_III lipo 95.8 0.91 2E-05 44.4 18.1 105 10-145 1-108 (344)
135 PF13579 Glyco_trans_4_4: Glyc 95.7 0.012 2.6E-07 49.9 4.0 93 24-146 6-102 (160)
136 PF08660 Alg14: Oligosaccharid 95.4 0.14 3.1E-06 44.2 9.5 114 13-146 2-127 (170)
137 PRK10916 ADP-heptose:LPS hepto 95.4 0.65 1.4E-05 45.5 15.5 104 9-145 1-106 (348)
138 TIGR02195 heptsyl_trn_II lipop 95.3 1.9 4.2E-05 41.9 18.5 102 10-145 1-105 (334)
139 KOG4626 O-linked N-acetylgluco 95.3 0.46 1E-05 48.4 13.7 124 278-407 757-887 (966)
140 PRK15490 Vi polysaccharide bio 95.3 0.55 1.2E-05 48.3 14.6 65 339-410 454-523 (578)
141 PRK14099 glycogen synthase; Pr 95.2 4.4 9.4E-05 41.7 28.2 39 8-46 3-47 (485)
142 PF13524 Glyco_trans_1_2: Glyc 94.8 0.25 5.5E-06 37.7 8.5 83 365-476 9-91 (92)
143 PHA01633 putative glycosyl tra 94.4 0.32 6.9E-06 47.1 10.1 85 339-440 200-307 (335)
144 PHA01630 putative group 1 glyc 94.0 0.53 1.2E-05 45.7 10.8 40 346-387 196-242 (331)
145 PF12000 Glyco_trans_4_3: Gkyc 93.9 0.75 1.6E-05 39.6 10.1 96 34-149 1-97 (171)
146 PRK10964 ADP-heptose:LPS hepto 93.5 2.4 5.2E-05 41.0 14.4 41 9-49 1-43 (322)
147 PF13439 Glyco_transf_4: Glyco 92.7 0.25 5.4E-06 42.4 5.6 29 18-46 11-39 (177)
148 COG0859 RfaF ADP-heptose:LPS h 92.2 9.5 0.00021 37.1 16.4 104 9-145 2-107 (334)
149 KOG2941 Beta-1,4-mannosyltrans 92.0 12 0.00026 35.9 27.1 125 8-152 12-141 (444)
150 TIGR02400 trehalose_OtsA alpha 91.3 1.8 3.9E-05 44.0 10.7 105 344-480 340-455 (456)
151 PLN02939 transferase, transfer 91.3 6 0.00013 43.5 14.9 84 339-439 836-930 (977)
152 TIGR03713 acc_sec_asp1 accesso 91.2 2.6 5.7E-05 43.6 11.8 93 340-459 409-507 (519)
153 cd02067 B12-binding B12 bindin 90.7 4.1 8.9E-05 32.7 10.4 46 10-55 1-46 (119)
154 PF07429 Glyco_transf_56: 4-al 90.2 3.6 7.8E-05 39.4 10.6 139 281-439 185-332 (360)
155 TIGR02919 accessory Sec system 89.9 8.7 0.00019 38.8 13.9 125 278-441 282-412 (438)
156 PRK13932 stationary phase surv 89.8 4.6 0.0001 37.3 10.9 43 4-49 2-44 (257)
157 PRK02261 methylaspartate mutas 89.6 1.1 2.3E-05 37.3 6.1 48 8-55 3-50 (137)
158 PRK02797 4-alpha-L-fucosyltran 88.5 6.7 0.00015 37.1 11.0 137 282-438 147-292 (322)
159 COG0496 SurE Predicted acid ph 88.1 3.2 6.9E-05 38.0 8.4 114 9-150 1-127 (252)
160 COG4370 Uncharacterized protei 87.5 2.9 6.3E-05 39.0 7.8 81 350-448 305-387 (412)
161 COG0438 RfaG Glycosyltransfera 86.1 30 0.00066 32.5 16.5 81 339-441 256-343 (381)
162 cd03788 GT1_TPS Trehalose-6-Ph 85.1 3.1 6.8E-05 42.5 7.7 73 344-441 345-428 (460)
163 PF02310 B12-binding: B12 bind 83.8 4 8.7E-05 32.7 6.5 48 9-56 1-48 (121)
164 PF02951 GSH-S_N: Prokaryotic 83.7 1.7 3.8E-05 34.9 4.1 38 9-46 1-41 (119)
165 PF02441 Flavoprotein: Flavopr 83.7 1.3 2.8E-05 36.3 3.5 45 9-54 1-45 (129)
166 cd07039 TPP_PYR_POX Pyrimidine 82.8 15 0.00032 31.5 9.8 29 356-386 63-97 (164)
167 PRK06849 hypothetical protein; 80.6 14 0.00029 36.9 10.1 35 8-46 4-38 (389)
168 PRK12342 hypothetical protein; 80.0 35 0.00075 31.7 11.7 40 107-148 99-144 (254)
169 PLN03063 alpha,alpha-trehalose 80.0 9.5 0.00021 41.8 9.4 99 351-481 370-477 (797)
170 COG0052 RpsB Ribosomal protein 79.7 16 0.00035 33.2 9.0 34 117-150 154-189 (252)
171 PF02142 MGS: MGS-like domain 79.7 2 4.4E-05 33.0 3.1 84 25-144 2-94 (95)
172 PRK14501 putative bifunctional 79.1 16 0.00035 39.8 10.8 111 343-481 345-462 (726)
173 cd02070 corrinoid_protein_B12- 77.2 6.9 0.00015 34.9 6.2 48 8-55 82-129 (201)
174 PF12146 Hydrolase_4: Putative 76.9 5.4 0.00012 29.4 4.5 34 9-42 16-49 (79)
175 TIGR00087 surE 5'/3'-nucleotid 76.0 39 0.00085 31.1 10.8 38 10-49 2-39 (244)
176 PRK05986 cob(I)alamin adenolsy 75.7 56 0.0012 28.8 11.4 100 8-130 22-126 (191)
177 cd03793 GT1_Glycogen_synthase_ 75.7 8.7 0.00019 39.9 7.0 80 350-440 468-552 (590)
178 PRK13933 stationary phase surv 75.1 40 0.00086 31.2 10.6 39 9-49 1-39 (253)
179 PRK13935 stationary phase surv 74.7 8.9 0.00019 35.4 6.2 39 9-49 1-39 (253)
180 COG2185 Sbm Methylmalonyl-CoA 74.3 8.5 0.00018 31.9 5.3 44 8-51 12-55 (143)
181 PRK08305 spoVFB dipicolinate s 73.7 5.8 0.00013 35.1 4.6 42 8-49 5-46 (196)
182 PRK00346 surE 5'(3')-nucleotid 73.2 38 0.00083 31.3 10.0 38 10-49 2-39 (250)
183 smart00851 MGS MGS-like domain 73.0 25 0.00055 26.5 7.6 34 109-144 47-89 (90)
184 TIGR02370 pyl_corrinoid methyl 72.4 10 0.00022 33.7 6.0 49 8-56 84-132 (197)
185 COG3660 Predicted nucleoside-d 72.4 83 0.0018 29.2 17.6 97 281-384 164-271 (329)
186 cd07038 TPP_PYR_PDC_IPDC_like 72.0 36 0.00079 29.0 9.1 25 362-386 63-93 (162)
187 cd07037 TPP_PYR_MenD Pyrimidin 71.8 36 0.00077 29.1 8.9 29 356-386 60-94 (162)
188 PF06925 MGDG_synth: Monogalac 71.7 11 0.00024 32.4 6.0 43 104-148 76-124 (169)
189 TIGR00715 precor6x_red precorr 71.4 16 0.00034 34.0 7.1 36 109-146 57-98 (256)
190 TIGR02398 gluc_glyc_Psyn gluco 70.9 1.1E+02 0.0023 31.6 13.5 111 342-483 364-484 (487)
191 PF05159 Capsule_synth: Capsul 70.7 25 0.00054 32.9 8.5 42 341-385 184-225 (269)
192 PF04413 Glycos_transf_N: 3-De 68.6 22 0.00047 31.2 7.1 100 10-148 22-126 (186)
193 cd02071 MM_CoA_mut_B12_BD meth 68.6 16 0.00036 29.4 6.0 45 10-54 1-45 (122)
194 cd02069 methionine_synthase_B1 67.9 14 0.00031 33.2 5.9 48 8-55 88-135 (213)
195 COG1703 ArgK Putative periplas 67.5 22 0.00047 33.6 7.0 39 8-46 51-89 (323)
196 COG0859 RfaF ADP-heptose:LPS h 67.5 49 0.0011 32.1 10.1 100 9-150 176-280 (334)
197 PF09314 DUF1972: Domain of un 67.3 70 0.0015 28.0 9.8 30 19-48 16-46 (185)
198 PRK13931 stationary phase surv 67.2 84 0.0018 29.3 10.9 31 118-148 86-129 (261)
199 cd01424 MGS_CPS_II Methylglyox 67.0 56 0.0012 25.6 8.6 84 20-145 10-100 (110)
200 PF01975 SurE: Survival protei 65.5 10 0.00023 33.5 4.5 121 9-149 1-134 (196)
201 PF04127 DFP: DNA / pantothena 65.0 5.5 0.00012 34.9 2.6 37 9-45 4-52 (185)
202 cd01974 Nitrogenase_MoFe_beta 64.8 54 0.0012 33.2 10.1 34 108-146 368-401 (435)
203 COG1618 Predicted nucleotide k 64.7 44 0.00096 28.5 7.6 38 8-45 5-42 (179)
204 PF00551 Formyl_trans_N: Formy 64.6 80 0.0017 27.4 10.0 105 9-148 1-109 (181)
205 PF04464 Glyphos_transf: CDP-G 64.1 5.7 0.00012 39.2 2.9 116 339-475 251-367 (369)
206 PRK06718 precorrin-2 dehydroge 63.7 41 0.00089 29.9 8.0 146 279-461 11-165 (202)
207 TIGR02195 heptsyl_trn_II lipop 63.6 1.4E+02 0.0031 28.7 12.9 100 9-149 175-279 (334)
208 PF01075 Glyco_transf_9: Glyco 63.4 14 0.0003 33.9 5.2 99 278-384 104-208 (247)
209 PRK12311 rpsB 30S ribosomal pr 63.4 28 0.00061 33.5 7.2 33 118-150 151-185 (326)
210 cd01980 Chlide_reductase_Y Chl 63.1 61 0.0013 32.6 10.0 31 111-146 344-374 (416)
211 TIGR02015 BchY chlorophyllide 63.1 87 0.0019 31.6 11.1 31 10-45 287-317 (422)
212 cd01423 MGS_CPS_I_III Methylgl 62.9 76 0.0016 25.2 8.8 87 21-145 11-106 (116)
213 TIGR01470 cysG_Nterm siroheme 62.6 70 0.0015 28.6 9.3 148 279-460 10-164 (205)
214 PRK10490 sensor protein KdpD; 62.4 15 0.00033 41.0 6.1 40 8-47 24-63 (895)
215 PRK07313 phosphopantothenoylcy 62.3 9.7 0.00021 33.3 3.7 42 10-52 3-44 (182)
216 COG2894 MinD Septum formation 61.8 55 0.0012 29.5 8.0 38 10-47 3-42 (272)
217 PRK06321 replicative DNA helic 61.7 85 0.0018 32.2 10.8 41 11-51 229-270 (472)
218 TIGR02655 circ_KaiC circadian 61.6 1.1E+02 0.0024 31.5 11.8 48 9-56 264-311 (484)
219 PLN02470 acetolactate synthase 61.5 47 0.001 35.1 9.3 90 285-385 2-109 (585)
220 PRK05920 aromatic acid decarbo 61.1 12 0.00026 33.4 4.0 44 8-52 3-46 (204)
221 cd01121 Sms Sms (bacterial rad 61.0 1.4E+02 0.003 29.6 11.8 42 11-52 85-126 (372)
222 KOG1387 Glycosyltransferase [C 60.4 1.7E+02 0.0037 28.4 19.9 122 20-155 58-187 (465)
223 TIGR00347 bioD dethiobiotin sy 59.4 98 0.0021 26.2 9.5 28 15-42 5-32 (166)
224 cd01425 RPS2 Ribosomal protein 59.3 57 0.0012 28.8 8.1 34 117-150 125-160 (193)
225 TIGR02852 spore_dpaB dipicolin 59.1 14 0.0003 32.5 4.0 40 9-48 1-40 (187)
226 PRK05595 replicative DNA helic 58.5 71 0.0015 32.4 9.7 41 11-51 204-245 (444)
227 PF06506 PrpR_N: Propionate ca 57.8 12 0.00026 32.6 3.4 30 355-387 33-62 (176)
228 TIGR01501 MthylAspMutase methy 56.7 34 0.00074 28.2 5.7 46 9-54 2-47 (134)
229 PRK08155 acetolactate synthase 56.6 71 0.0015 33.6 9.6 89 286-385 4-109 (564)
230 COG1797 CobB Cobyrinic acid a, 56.0 63 0.0014 32.3 8.3 32 11-42 3-35 (451)
231 PF09001 DUF1890: Domain of un 55.2 12 0.00027 30.5 2.8 36 18-53 9-44 (139)
232 PRK08506 replicative DNA helic 54.7 1.1E+02 0.0025 31.3 10.4 43 10-52 194-236 (472)
233 cd01124 KaiC KaiC is a circadi 54.5 62 0.0013 27.9 7.6 45 11-55 2-46 (187)
234 PRK06067 flagellar accessory p 54.4 56 0.0012 29.7 7.6 45 10-54 27-71 (234)
235 PRK08760 replicative DNA helic 54.0 65 0.0014 33.1 8.5 42 10-51 231-273 (476)
236 PF00731 AIRC: AIR carboxylase 54.0 99 0.0021 26.1 8.1 139 281-460 2-148 (150)
237 PRK10916 ADP-heptose:LPS hepto 53.8 82 0.0018 30.7 9.0 104 9-149 181-289 (348)
238 TIGR00421 ubiX_pad polyprenyl 53.1 15 0.00033 32.0 3.4 42 10-52 1-42 (181)
239 TIGR00173 menD 2-succinyl-5-en 52.7 97 0.0021 31.3 9.6 27 356-384 63-95 (432)
240 cd00561 CobA_CobO_BtuR ATP:cor 52.7 1.5E+02 0.0032 25.3 12.2 99 9-130 3-106 (159)
241 KOG0832 Mitochondrial/chloropl 52.5 27 0.0006 31.3 4.7 124 9-151 80-207 (251)
242 PF01210 NAD_Gly3P_dh_N: NAD-d 52.4 9.7 0.00021 32.4 2.0 32 10-46 1-32 (157)
243 cd07035 TPP_PYR_POX_like Pyrim 52.0 1.4E+02 0.003 24.9 9.3 29 356-386 59-93 (155)
244 TIGR03600 phage_DnaB phage rep 52.0 1.4E+02 0.0031 29.9 10.7 41 11-51 197-238 (421)
245 PRK07206 hypothetical protein; 51.9 58 0.0013 32.6 7.8 31 10-45 4-34 (416)
246 cd02065 B12-binding_like B12 b 51.9 41 0.00088 26.9 5.6 44 11-54 2-45 (125)
247 PRK06029 3-octaprenyl-4-hydrox 51.6 21 0.00046 31.3 4.0 44 10-54 3-47 (185)
248 PRK05636 replicative DNA helic 51.2 72 0.0016 33.0 8.3 41 11-51 268-309 (505)
249 PRK09165 replicative DNA helic 51.1 1.1E+02 0.0025 31.5 9.8 42 11-52 220-276 (497)
250 COG0801 FolK 7,8-dihydro-6-hyd 50.8 32 0.00069 29.2 4.7 34 281-314 3-36 (160)
251 COG1484 DnaC DNA replication p 50.4 29 0.00062 32.3 4.9 47 8-54 105-151 (254)
252 PRK13789 phosphoribosylamine-- 50.1 44 0.00095 33.8 6.5 33 8-45 4-36 (426)
253 KOG0780 Signal recognition par 49.8 1.4E+02 0.003 29.5 9.2 40 10-49 103-142 (483)
254 PRK03359 putative electron tra 49.8 34 0.00073 31.8 5.2 41 107-149 102-148 (256)
255 COG1066 Sms Predicted ATP-depe 49.6 1.5E+02 0.0033 29.5 9.6 43 10-53 95-137 (456)
256 KOG0853 Glycosyltransferase [C 49.6 15 0.00032 37.4 3.0 65 370-452 381-445 (495)
257 PRK00090 bioD dithiobiotin syn 48.7 2E+02 0.0043 25.7 10.2 33 11-43 2-35 (222)
258 cd03466 Nitrogenase_NifN_2 Nit 48.6 2E+02 0.0043 29.1 11.0 35 107-146 362-396 (429)
259 PRK11823 DNA repair protein Ra 48.6 2.2E+02 0.0048 28.9 11.3 44 10-53 82-125 (446)
260 cd01968 Nitrogenase_NifE_I Nit 48.0 1.9E+02 0.004 29.1 10.7 34 108-146 347-380 (410)
261 TIGR02113 coaC_strep phosphopa 47.5 20 0.00043 31.2 3.1 42 10-52 2-43 (177)
262 PRK13982 bifunctional SbtC-lik 47.4 26 0.00056 35.7 4.3 39 8-46 256-306 (475)
263 TIGR02201 heptsyl_trn_III lipo 47.3 2.7E+02 0.0059 26.9 12.0 36 108-149 253-288 (344)
264 COG4126 Hydantoin racemase [Am 46.9 2.1E+02 0.0046 25.8 9.2 40 104-145 161-202 (230)
265 COG4394 Uncharacterized protei 46.8 2.6E+02 0.0056 26.4 14.0 39 341-382 239-280 (370)
266 TIGR00665 DnaB replicative DNA 46.7 1.8E+02 0.0039 29.3 10.5 42 10-51 197-239 (434)
267 PRK14478 nitrogenase molybdenu 46.7 2.2E+02 0.0049 29.2 11.1 33 108-145 384-416 (475)
268 cd03789 GT1_LPS_heptosyltransf 46.7 1.6E+02 0.0036 27.4 9.6 88 22-149 139-226 (279)
269 PRK11519 tyrosine kinase; Prov 46.4 73 0.0016 34.7 7.9 38 8-45 525-564 (719)
270 PRK13604 luxD acyl transferase 46.4 40 0.00088 32.2 5.2 35 8-42 36-70 (307)
271 PF02702 KdpD: Osmosensitive K 46.3 37 0.00079 30.1 4.5 47 8-54 5-52 (211)
272 PRK09620 hypothetical protein; 46.3 37 0.00079 31.0 4.8 38 8-45 3-52 (229)
273 PRK00784 cobyric acid synthase 46.1 1.8E+02 0.004 29.9 10.5 35 10-44 4-39 (488)
274 cd01452 VWA_26S_proteasome_sub 46.0 1.5E+02 0.0033 26.0 8.4 63 8-71 107-173 (187)
275 TIGR02699 archaeo_AfpA archaeo 45.5 34 0.00074 29.6 4.2 41 11-52 2-44 (174)
276 TIGR00521 coaBC_dfp phosphopan 45.2 28 0.00062 34.6 4.2 46 8-54 3-48 (390)
277 TIGR01283 nifE nitrogenase mol 45.0 1.6E+02 0.0035 30.0 9.8 35 107-146 385-419 (456)
278 TIGR02700 flavo_MJ0208 archaeo 45.0 33 0.00072 31.4 4.4 44 10-53 1-46 (234)
279 COG0541 Ffh Signal recognition 44.7 2.2E+02 0.0047 28.6 10.0 47 8-54 100-146 (451)
280 PF06506 PrpR_N: Propionate ca 44.3 33 0.00071 29.8 4.0 116 20-150 17-153 (176)
281 cd08783 Death_MALT1 Death doma 44.1 1.1E+02 0.0023 23.5 5.9 64 389-482 21-84 (97)
282 PRK10964 ADP-heptose:LPS hepto 43.9 2.8E+02 0.006 26.6 10.9 30 118-149 252-281 (322)
283 COG2874 FlaH Predicted ATPases 43.7 92 0.002 28.0 6.6 91 18-131 38-135 (235)
284 PRK06732 phosphopantothenate-- 43.3 31 0.00068 31.4 3.9 21 25-45 29-49 (229)
285 TIGR00416 sms DNA repair prote 43.3 2.8E+02 0.0061 28.3 11.1 43 10-52 96-138 (454)
286 PRK08527 acetolactate synthase 43.1 1.2E+02 0.0026 31.9 8.8 28 356-385 66-99 (563)
287 COG4088 Predicted nucleotide k 43.1 30 0.00065 30.9 3.4 34 11-44 4-37 (261)
288 PRK08199 thiamine pyrophosphat 43.0 1.5E+02 0.0032 31.2 9.4 28 356-385 71-104 (557)
289 PRK10422 lipopolysaccharide co 43.0 1.9E+02 0.004 28.2 9.7 36 108-149 255-290 (352)
290 PTZ00445 p36-lilke protein; Pr 42.7 84 0.0018 28.2 6.2 113 20-147 74-205 (219)
291 PRK07773 replicative DNA helic 42.3 1.9E+02 0.0041 32.5 10.4 42 11-52 220-262 (886)
292 PF02585 PIG-L: GlcNAc-PI de-N 42.1 1.6E+02 0.0034 23.6 7.7 25 102-128 85-109 (128)
293 PF05693 Glycogen_syn: Glycoge 41.7 37 0.0008 35.4 4.4 40 120-159 142-184 (633)
294 PLN02939 transferase, transfer 41.6 45 0.00098 37.0 5.3 39 8-46 481-525 (977)
295 PRK05299 rpsB 30S ribosomal pr 41.3 2.3E+02 0.0049 26.4 9.2 33 118-150 156-190 (258)
296 PF01075 Glyco_transf_9: Glyco 41.3 80 0.0017 28.8 6.5 102 8-151 105-213 (247)
297 PRK06456 acetolactate synthase 41.1 1.1E+02 0.0024 32.2 8.2 28 356-385 68-101 (572)
298 PF08323 Glyco_transf_5: Starc 40.9 23 0.00049 32.7 2.7 23 24-46 21-43 (245)
299 PRK06276 acetolactate synthase 40.7 1.4E+02 0.003 31.6 8.8 28 356-385 63-96 (586)
300 COG0503 Apt Adenine/guanine ph 40.6 62 0.0014 28.2 5.2 37 108-146 44-82 (179)
301 TIGR00640 acid_CoA_mut_C methy 40.4 92 0.002 25.5 5.9 47 8-54 2-49 (132)
302 PF05728 UPF0227: Uncharacteri 40.4 52 0.0011 28.9 4.7 42 107-150 47-91 (187)
303 TIGR00118 acolac_lg acetolacta 40.1 1.3E+02 0.0028 31.6 8.5 28 356-385 64-97 (558)
304 KOG1250 Threonine/serine dehyd 40.1 3.9E+02 0.0084 26.6 11.5 61 364-441 249-317 (457)
305 TIGR01011 rpsB_bact ribosomal 40.0 2.9E+02 0.0063 25.1 9.7 33 118-150 154-188 (225)
306 PRK05579 bifunctional phosphop 40.0 44 0.00094 33.4 4.6 45 8-53 6-50 (399)
307 CHL00067 rps2 ribosomal protei 40.0 2.6E+02 0.0056 25.5 9.3 33 118-150 160-194 (230)
308 PF07355 GRDB: Glycine/sarcosi 39.8 62 0.0013 31.3 5.3 41 103-145 66-116 (349)
309 KOG3339 Predicted glycosyltran 39.5 77 0.0017 27.6 5.2 25 10-35 40-64 (211)
310 COG0003 ArsA Predicted ATPase 39.1 3.3E+02 0.0072 26.3 10.3 41 9-49 2-43 (322)
311 PRK08322 acetolactate synthase 38.8 1.4E+02 0.0031 31.2 8.6 28 356-385 63-96 (547)
312 COG0299 PurN Folate-dependent 38.6 1.1E+02 0.0023 27.1 6.1 106 294-437 64-172 (200)
313 PRK07710 acetolactate synthase 38.6 1.3E+02 0.0028 31.7 8.2 28 356-385 78-111 (571)
314 PF00448 SRP54: SRP54-type pro 38.6 2.2E+02 0.0048 25.1 8.5 39 10-48 3-41 (196)
315 PF04244 DPRP: Deoxyribodipyri 38.5 46 0.001 30.2 4.2 25 21-45 47-71 (224)
316 cd07025 Peptidase_S66 LD-Carbo 38.1 53 0.0012 31.0 4.7 76 291-388 45-122 (282)
317 PRK10867 signal recognition pa 38.0 3.4E+02 0.0073 27.5 10.5 42 9-50 101-143 (433)
318 PRK11269 glyoxylate carboligas 37.7 1.5E+02 0.0033 31.3 8.6 24 362-385 72-101 (591)
319 PRK13011 formyltetrahydrofolat 37.6 3.3E+02 0.0071 25.8 9.9 102 299-438 156-259 (286)
320 TIGR00959 ffh signal recogniti 37.5 2.8E+02 0.0061 28.0 9.9 42 9-50 100-142 (428)
321 TIGR02193 heptsyl_trn_I lipopo 37.2 1.6E+02 0.0034 28.1 8.0 30 118-149 253-282 (319)
322 COG0489 Mrp ATPases involved i 37.1 2.5E+02 0.0055 26.2 9.0 47 8-54 56-104 (265)
323 PRK12827 short chain dehydroge 36.9 1.5E+02 0.0032 26.7 7.6 37 1-43 1-37 (249)
324 KOG0081 GTPase Rab27, small G 36.9 78 0.0017 26.8 4.8 40 107-146 107-161 (219)
325 cd01141 TroA_d Periplasmic bin 36.7 51 0.0011 28.6 4.2 38 107-147 60-99 (186)
326 COG1698 Uncharacterized protei 36.3 1.6E+02 0.0035 22.2 5.8 53 426-482 11-67 (93)
327 cd05022 S-100A13 S-100A13: S-1 36.2 63 0.0014 24.4 4.0 56 421-483 22-77 (89)
328 PRK14477 bifunctional nitrogen 36.1 3.3E+02 0.0071 30.7 11.1 35 108-147 380-414 (917)
329 cd01840 SGNH_hydrolase_yrhL_li 36.0 1.1E+02 0.0023 25.6 5.8 39 278-317 50-88 (150)
330 PF10083 DUF2321: Uncharacteri 35.5 1.1E+02 0.0025 25.6 5.5 73 384-481 78-151 (158)
331 PRK05632 phosphate acetyltrans 35.4 3.7E+02 0.008 29.2 11.1 35 10-44 4-39 (684)
332 PRK01077 cobyrinic acid a,c-di 35.3 4.8E+02 0.01 26.5 11.4 35 10-44 5-40 (451)
333 COG2910 Putative NADH-flavin r 35.1 37 0.0008 29.6 2.8 33 9-45 1-33 (211)
334 PRK04328 hypothetical protein; 35.0 3.6E+02 0.0078 24.8 11.2 45 10-54 25-69 (249)
335 PRK08266 hypothetical protein; 34.9 2.5E+02 0.0053 29.4 9.6 27 357-385 69-101 (542)
336 TIGR00708 cobA cob(I)alamin ad 34.9 3E+02 0.0066 23.8 11.9 100 8-129 5-107 (173)
337 PRK09219 xanthine phosphoribos 34.8 69 0.0015 28.2 4.6 40 105-146 38-79 (189)
338 PRK06270 homoserine dehydrogen 34.7 2.1E+02 0.0045 27.9 8.4 59 349-408 80-150 (341)
339 PRK13010 purU formyltetrahydro 34.7 3.5E+02 0.0077 25.6 9.6 104 298-439 159-264 (289)
340 PRK07449 2-succinyl-5-enolpyru 34.6 1.2E+02 0.0027 31.8 7.3 79 297-386 12-106 (568)
341 PLN03064 alpha,alpha-trehalose 34.4 4.7E+02 0.01 29.5 11.7 97 352-480 455-560 (934)
342 PF12695 Abhydrolase_5: Alpha/ 34.3 82 0.0018 25.4 4.9 35 11-45 1-35 (145)
343 PRK08589 short chain dehydroge 34.2 1.8E+02 0.004 26.9 7.8 33 10-45 7-39 (272)
344 PRK04940 hypothetical protein; 34.1 89 0.0019 27.2 5.0 31 119-149 60-91 (180)
345 PF03808 Glyco_tran_WecB: Glyc 34.1 3E+02 0.0066 23.6 9.0 86 214-318 51-136 (172)
346 TIGR03877 thermo_KaiC_1 KaiC d 34.0 3.6E+02 0.0078 24.5 9.7 47 9-55 22-68 (237)
347 CHL00076 chlB photochlorophyll 34.0 57 0.0012 33.8 4.6 36 107-147 364-399 (513)
348 CHL00072 chlL photochlorophyll 33.9 77 0.0017 30.1 5.1 36 9-44 1-36 (290)
349 COG4306 Uncharacterized protei 33.9 87 0.0019 25.0 4.4 51 424-481 97-151 (160)
350 PLN02989 cinnamyl-alcohol dehy 33.9 74 0.0016 30.5 5.1 37 1-44 1-37 (325)
351 cd01976 Nitrogenase_MoFe_alpha 33.5 55 0.0012 33.0 4.2 36 106-146 358-393 (421)
352 PRK13982 bifunctional SbtC-lik 33.4 59 0.0013 33.2 4.4 46 8-54 70-115 (475)
353 PRK06249 2-dehydropantoate 2-r 33.3 99 0.0022 29.6 5.9 34 8-46 5-38 (313)
354 TIGR01861 ANFD nitrogenase iro 33.2 3.6E+02 0.0078 28.0 10.1 30 111-145 392-421 (513)
355 PRK12921 2-dehydropantoate 2-r 33.2 69 0.0015 30.4 4.8 31 9-44 1-31 (305)
356 PF02374 ArsA_ATPase: Anion-tr 33.0 66 0.0014 30.8 4.5 40 10-49 2-42 (305)
357 TIGR01007 eps_fam capsular exo 33.0 87 0.0019 27.6 5.1 37 9-45 17-55 (204)
358 PRK00994 F420-dependent methyl 32.8 84 0.0018 28.5 4.6 40 108-149 51-96 (277)
359 TIGR00379 cobB cobyrinic acid 32.6 1.6E+02 0.0035 30.0 7.5 34 11-44 2-36 (449)
360 KOG0541 Alkyl hydroperoxide re 32.4 86 0.0019 26.4 4.4 36 9-44 44-86 (171)
361 TIGR02329 propionate_PrpR prop 32.4 3.2E+02 0.0069 28.5 9.6 29 118-149 144-172 (526)
362 PRK02910 light-independent pro 32.4 68 0.0015 33.4 4.8 35 108-147 353-387 (519)
363 PRK05647 purN phosphoribosylgl 32.3 3.6E+02 0.0078 23.9 9.9 34 9-45 2-37 (200)
364 TIGR03880 KaiC_arch_3 KaiC dom 32.0 3.7E+02 0.0081 24.0 11.4 46 10-55 18-63 (224)
365 cd02034 CooC The accessory pro 31.9 1.2E+02 0.0025 24.2 5.1 37 10-46 1-37 (116)
366 PF13499 EF-hand_7: EF-hand do 31.5 66 0.0014 22.2 3.3 53 421-478 13-65 (66)
367 cd02032 Bchl_like This family 31.3 83 0.0018 29.3 4.9 35 9-43 1-35 (267)
368 PRK06522 2-dehydropantoate 2-r 31.2 59 0.0013 30.8 4.0 31 9-44 1-31 (304)
369 PRK05876 short chain dehydroge 31.1 89 0.0019 29.2 5.1 38 1-44 1-38 (275)
370 TIGR01278 DPOR_BchB light-inde 31.1 73 0.0016 33.1 4.8 36 108-148 355-390 (511)
371 PF13450 NAD_binding_8: NAD(P) 30.9 61 0.0013 22.9 3.0 19 25-43 8-26 (68)
372 cd01981 Pchlide_reductase_B Pc 30.9 74 0.0016 32.1 4.7 36 108-148 361-396 (430)
373 COG1422 Predicted membrane pro 30.8 1.5E+02 0.0033 26.1 5.8 72 370-466 24-96 (201)
374 COG2179 Predicted hydrolase of 30.6 3.3E+02 0.0071 23.5 7.6 98 15-149 41-140 (175)
375 PRK06965 acetolactate synthase 30.5 2.4E+02 0.0052 29.8 8.7 30 355-386 83-118 (587)
376 PF05225 HTH_psq: helix-turn-h 30.5 80 0.0017 20.3 3.2 27 426-455 1-27 (45)
377 TIGR03878 thermo_KaiC_2 KaiC d 30.5 4.4E+02 0.0096 24.4 11.9 38 10-47 38-75 (259)
378 PF00862 Sucrose_synth: Sucros 30.4 82 0.0018 32.2 4.7 36 114-149 396-433 (550)
379 cd00861 ProRS_anticodon_short 30.1 94 0.002 23.2 4.2 35 9-43 2-38 (94)
380 PRK06194 hypothetical protein; 30.1 94 0.002 29.0 5.1 38 1-44 1-38 (287)
381 cd07062 Peptidase_S66_mccF_lik 30.0 83 0.0018 30.2 4.6 75 291-387 49-125 (308)
382 COG2205 KdpD Osmosensitive K+ 29.9 1.3E+02 0.0028 32.7 6.2 39 8-46 22-60 (890)
383 COG4081 Uncharacterized protei 29.9 74 0.0016 25.8 3.4 29 17-45 13-41 (148)
384 PF02826 2-Hacid_dh_C: D-isome 29.8 95 0.0021 26.9 4.7 104 279-436 37-143 (178)
385 TIGR01918 various_sel_PB selen 29.8 1.1E+02 0.0024 30.5 5.4 42 103-146 62-113 (431)
386 PF02844 GARS_N: Phosphoribosy 29.6 74 0.0016 24.7 3.4 36 107-144 52-90 (100)
387 TIGR01917 gly_red_sel_B glycin 29.6 1.1E+02 0.0024 30.5 5.4 42 103-146 62-113 (431)
388 PRK09302 circadian clock prote 29.4 1.7E+02 0.0038 30.2 7.3 46 10-55 275-320 (509)
389 PRK03094 hypothetical protein; 29.2 51 0.0011 24.3 2.3 21 25-45 10-30 (80)
390 PRK08979 acetolactate synthase 29.1 2.8E+02 0.0062 29.2 8.9 28 356-385 67-100 (572)
391 PRK06466 acetolactate synthase 29.0 2.7E+02 0.0058 29.4 8.7 28 356-385 67-100 (574)
392 PF02558 ApbA: Ketopantoate re 28.8 78 0.0017 26.2 3.9 21 26-46 11-31 (151)
393 PRK02155 ppnK NAD(+)/NADH kina 28.8 1.2E+02 0.0027 28.7 5.5 29 355-385 62-94 (291)
394 PF03720 UDPG_MGDP_dh_C: UDP-g 28.7 69 0.0015 25.0 3.3 31 23-53 17-47 (106)
395 TIGR01281 DPOR_bchL light-inde 28.6 99 0.0021 28.7 4.9 34 9-42 1-34 (268)
396 PRK06882 acetolactate synthase 28.6 2.8E+02 0.006 29.2 8.8 28 356-385 67-100 (574)
397 COG3195 Uncharacterized protei 28.6 2.9E+02 0.0062 23.6 6.8 90 355-459 71-164 (176)
398 PRK07064 hypothetical protein; 28.5 3.3E+02 0.0071 28.4 9.2 28 356-385 66-99 (544)
399 PRK12744 short chain dehydroge 28.4 2.6E+02 0.0056 25.5 7.7 39 1-43 1-39 (257)
400 TIGR02720 pyruv_oxi_spxB pyruv 28.3 2.1E+02 0.0046 30.1 7.8 30 355-386 62-97 (575)
401 COG2120 Uncharacterized protei 28.2 1E+02 0.0023 28.2 4.8 37 8-44 10-46 (237)
402 PRK12475 thiamine/molybdopteri 28.2 2.9E+02 0.0064 26.8 8.1 32 8-44 24-56 (338)
403 PF06745 KaiC: KaiC; InterPro 28.1 1.7E+02 0.0037 26.3 6.2 48 9-56 20-68 (226)
404 PF09334 tRNA-synt_1g: tRNA sy 28.1 45 0.00098 33.2 2.6 28 19-46 16-46 (391)
405 cd02072 Glm_B12_BD B12 binding 27.9 1.5E+02 0.0033 24.2 5.1 42 10-51 1-42 (128)
406 PRK13869 plasmid-partitioning 27.9 98 0.0021 31.0 4.9 37 8-44 120-158 (405)
407 TIGR01369 CPSaseII_lrg carbamo 27.9 3.1E+02 0.0066 31.5 9.3 38 8-45 554-597 (1050)
408 cd00672 CysRS_core catalytic c 27.6 3E+02 0.0065 24.7 7.5 29 18-46 35-66 (213)
409 COG2210 Peroxiredoxin family p 27.5 93 0.002 25.6 3.8 34 12-45 7-40 (137)
410 PRK07282 acetolactate synthase 27.5 2.4E+02 0.0053 29.6 8.0 28 356-385 73-106 (566)
411 cd06559 Endonuclease_V Endonuc 27.5 58 0.0013 29.1 2.9 40 107-146 81-127 (208)
412 PF01380 SIS: SIS domain SIS d 27.3 1.3E+02 0.0027 24.0 4.8 33 17-49 61-93 (131)
413 PF03721 UDPG_MGDP_dh_N: UDP-g 27.3 1.1E+02 0.0023 26.8 4.5 39 9-54 1-39 (185)
414 PF00148 Oxidored_nitro: Nitro 27.3 2.6E+02 0.0057 27.7 8.0 94 9-146 272-365 (398)
415 TIGR01380 glut_syn glutathione 27.2 99 0.0021 29.7 4.7 37 9-45 1-40 (312)
416 PF04007 DUF354: Protein of un 27.2 2.4E+02 0.0053 27.4 7.3 81 293-384 12-109 (335)
417 PRK14092 2-amino-4-hydroxy-6-h 27.2 1.5E+02 0.0032 25.4 5.1 29 279-307 7-35 (163)
418 PLN02293 adenine phosphoribosy 27.0 1.5E+02 0.0032 26.1 5.3 43 102-146 47-91 (187)
419 cd01965 Nitrogenase_MoFe_beta_ 27.0 92 0.002 31.5 4.6 35 107-146 361-395 (428)
420 PRK08265 short chain dehydroge 26.8 1.2E+02 0.0027 27.8 5.2 32 10-44 7-38 (261)
421 PRK07525 sulfoacetaldehyde ace 26.8 4.1E+02 0.0089 28.1 9.6 29 355-385 67-101 (588)
422 PF01695 IstB_IS21: IstB-like 26.6 88 0.0019 27.2 3.8 38 8-45 47-84 (178)
423 TIGR03018 pepcterm_TyrKin exop 26.5 1.5E+02 0.0033 26.2 5.6 38 8-45 34-74 (207)
424 PRK07979 acetolactate synthase 26.4 3.6E+02 0.0078 28.4 9.1 28 356-385 67-100 (574)
425 PF02776 TPP_enzyme_N: Thiamin 26.2 1.9E+02 0.004 24.8 5.8 30 355-386 63-98 (172)
426 PF02780 Transketolase_C: Tran 26.2 1.1E+02 0.0025 24.4 4.2 34 8-43 9-42 (124)
427 TIGR00288 conserved hypothetic 25.8 2E+02 0.0043 24.6 5.6 39 11-54 109-148 (160)
428 PRK08673 3-deoxy-7-phosphohept 25.8 6.3E+02 0.014 24.6 12.2 127 281-437 179-325 (335)
429 PF07991 IlvN: Acetohydroxy ac 25.7 87 0.0019 26.8 3.4 35 8-47 4-38 (165)
430 KOG1209 1-Acyl dihydroxyaceton 25.7 1.4E+02 0.003 26.9 4.7 39 1-43 1-39 (289)
431 TIGR00639 PurN phosphoribosylg 25.6 4.6E+02 0.01 23.0 11.2 34 9-45 1-36 (190)
432 cd01983 Fer4_NifH The Fer4_Nif 25.6 1.7E+02 0.0036 21.4 5.0 33 11-43 2-34 (99)
433 TIGR01744 XPRTase xanthine pho 25.6 1.3E+02 0.0027 26.6 4.6 39 106-146 39-79 (191)
434 PRK14619 NAD(P)H-dependent gly 25.3 83 0.0018 30.1 3.8 33 8-45 4-36 (308)
435 PRK10353 3-methyl-adenine DNA 25.2 3.7E+02 0.0081 23.6 7.3 81 383-472 22-116 (187)
436 TIGR01162 purE phosphoribosyla 24.9 4.3E+02 0.0093 22.4 8.8 32 425-461 116-147 (156)
437 cd01715 ETF_alpha The electron 24.9 1.6E+02 0.0035 25.1 5.1 40 105-146 71-113 (168)
438 PF00532 Peripla_BP_1: Peripla 24.8 5.1E+02 0.011 24.2 9.0 99 21-145 102-211 (279)
439 PRK12826 3-ketoacyl-(acyl-carr 24.7 1.5E+02 0.0033 26.7 5.4 27 17-45 13-39 (251)
440 TIGR01286 nifK nitrogenase mol 24.6 1.1E+02 0.0025 31.7 4.8 34 108-146 428-461 (515)
441 TIGR01662 HAD-SF-IIIA HAD-supe 24.6 3E+02 0.0065 22.0 6.6 21 26-46 31-51 (132)
442 PF01738 DLH: Dienelactone hyd 24.6 1.3E+02 0.0028 26.8 4.7 35 8-42 13-47 (218)
443 PF10093 DUF2331: Uncharacteri 24.6 95 0.0021 30.5 3.9 91 288-382 188-286 (374)
444 COG3349 Uncharacterized conser 24.5 75 0.0016 32.4 3.3 31 9-44 1-31 (485)
445 TIGR01285 nifN nitrogenase mol 24.5 1.2E+02 0.0025 30.8 4.8 34 108-146 364-397 (432)
446 PRK06935 2-deoxy-D-gluconate 3 24.4 1.9E+02 0.0041 26.4 6.0 33 10-45 16-48 (258)
447 PRK06222 ferredoxin-NADP(+) re 24.4 1.7E+02 0.0038 27.4 5.7 37 9-47 99-135 (281)
448 PF00070 Pyr_redox: Pyridine n 24.3 1.2E+02 0.0026 22.0 3.7 23 24-46 10-32 (80)
449 PTZ00119 40S ribosomal protein 24.3 2.1E+02 0.0045 26.6 5.7 58 425-482 82-141 (302)
450 PRK07586 hypothetical protein; 24.3 3.4E+02 0.0075 28.1 8.4 29 356-386 64-98 (514)
451 PF03698 UPF0180: Uncharacteri 24.3 70 0.0015 23.7 2.3 22 25-46 10-31 (80)
452 PLN02695 GDP-D-mannose-3',5'-e 24.2 1.5E+02 0.0034 29.1 5.6 33 8-44 21-53 (370)
453 cd01147 HemV-2 Metal binding p 24.1 1.1E+02 0.0025 28.0 4.4 38 108-148 66-106 (262)
454 cd06533 Glyco_transf_WecG_TagA 24.0 4.6E+02 0.01 22.4 9.3 86 214-318 49-134 (171)
455 PHA02754 hypothetical protein; 24.0 1.1E+02 0.0023 20.8 2.9 28 426-461 3-30 (67)
456 PRK09107 acetolactate synthase 23.8 4.6E+02 0.0099 27.8 9.3 29 356-386 74-108 (595)
457 PLN00016 RNA-binding protein; 23.8 1E+02 0.0022 30.4 4.2 36 8-45 52-89 (378)
458 PLN00061 photosystem II protei 23.8 4.3E+02 0.0094 22.0 6.9 55 429-483 62-125 (150)
459 TIGR01012 Sa_S2_E_A ribosomal 23.6 94 0.002 27.5 3.4 33 118-150 107-141 (196)
460 KOG3062 RNA polymerase II elon 23.6 1.6E+02 0.0034 26.8 4.7 33 10-42 3-36 (281)
461 TIGR03029 EpsG chain length de 23.4 1.6E+02 0.0035 27.4 5.3 36 8-43 102-139 (274)
462 TIGR01917 gly_red_sel_B glycin 23.4 4.2E+02 0.0092 26.6 8.0 50 104-155 323-379 (431)
463 PF02572 CobA_CobO_BtuR: ATP:c 23.4 3.3E+02 0.0072 23.5 6.7 99 8-129 3-106 (172)
464 COG2230 Cfa Cyclopropane fatty 23.3 40 0.00087 31.7 1.1 39 365-404 80-121 (283)
465 cd01421 IMPCH Inosine monophos 23.2 2.8E+02 0.0061 24.3 6.2 31 22-54 10-40 (187)
466 PRK10749 lysophospholipase L2; 23.2 1.5E+02 0.0031 28.6 5.1 36 10-45 55-90 (330)
467 PRK01372 ddl D-alanine--D-alan 22.9 1.4E+02 0.0031 28.2 4.9 38 8-45 4-45 (304)
468 KOG2825 Putative arsenite-tran 22.9 4.8E+02 0.01 24.3 7.7 42 8-49 18-60 (323)
469 TIGR03446 mycothiol_Mca mycoth 22.8 6.5E+02 0.014 23.8 11.7 21 104-126 108-128 (283)
470 TIGR00313 cobQ cobyric acid sy 22.8 8.4E+02 0.018 25.0 12.7 28 18-45 9-36 (475)
471 PF13377 Peripla_BP_3: Peripla 22.8 4.3E+02 0.0093 21.6 7.6 28 112-141 63-92 (160)
472 PLN02496 probable phosphopanto 22.7 1E+02 0.0022 27.6 3.4 44 8-53 19-62 (209)
473 PRK09423 gldA glycerol dehydro 22.6 5.5E+02 0.012 25.2 9.1 41 108-150 75-118 (366)
474 TIGR01279 DPOR_bchN light-inde 22.5 5.6E+02 0.012 25.6 9.2 35 8-47 274-308 (407)
475 TIGR00655 PurU formyltetrahydr 22.5 6.6E+02 0.014 23.7 9.4 103 298-438 150-254 (280)
476 PF07015 VirC1: VirC1 protein; 22.5 2.1E+02 0.0045 26.1 5.4 35 17-51 11-45 (231)
477 PRK12815 carB carbamoyl phosph 22.5 4.1E+02 0.0089 30.6 9.1 96 7-144 554-658 (1068)
478 PF06825 HSBP1: Heat shock fac 22.4 1.2E+02 0.0027 20.5 3.0 48 428-481 2-49 (54)
479 PF04493 Endonuclease_5: Endon 22.4 1E+02 0.0023 27.5 3.5 40 107-146 77-123 (206)
480 TIGR03453 partition_RepA plasm 22.3 1.4E+02 0.003 29.7 4.8 38 8-45 103-142 (387)
481 COG2086 FixA Electron transfer 22.3 1.6E+02 0.0035 27.4 4.8 39 106-146 100-144 (260)
482 PF01497 Peripla_BP_2: Peripla 22.1 1.1E+02 0.0023 27.6 3.7 38 110-150 54-93 (238)
483 PHA02857 monoglyceride lipase; 22.1 1.4E+02 0.003 27.6 4.6 38 8-45 24-61 (276)
484 TIGR01829 AcAcCoA_reduct aceto 22.0 3.3E+02 0.0071 24.3 7.0 31 11-44 2-32 (242)
485 PF01993 MTD: methylene-5,6,7, 22.0 1.3E+02 0.0028 27.4 3.9 42 107-150 49-96 (276)
486 PF00282 Pyridoxal_deC: Pyrido 21.9 1.7E+02 0.0036 29.0 5.2 71 359-440 104-191 (373)
487 cd01714 ETF_beta The electron 21.9 1.6E+02 0.0034 26.2 4.6 38 106-145 97-140 (202)
488 cd00860 ThrRS_anticodon ThrRS 21.9 1.8E+02 0.0039 21.3 4.4 34 9-43 2-35 (91)
489 PRK06719 precorrin-2 dehydroge 21.9 1.4E+02 0.003 25.3 4.1 32 9-45 14-45 (157)
490 TIGR00745 apbA_panE 2-dehydrop 21.7 89 0.0019 29.3 3.2 19 27-45 5-23 (293)
491 COG0452 Dfp Phosphopantothenoy 21.7 1.2E+02 0.0027 30.1 4.2 45 9-54 5-49 (392)
492 PRK08057 cobalt-precorrin-6x r 21.7 1.4E+02 0.003 27.6 4.3 38 107-146 55-98 (248)
493 PRK11914 diacylglycerol kinase 21.7 3.1E+02 0.0067 26.1 6.9 25 362-386 68-96 (306)
494 cd06320 PBP1_allose_binding Pe 21.7 6.1E+02 0.013 23.0 9.6 29 118-146 56-88 (275)
495 TIGR03837 efp_adjacent_2 conse 21.7 1.2E+02 0.0026 29.7 3.9 28 18-45 10-38 (371)
496 PRK04020 rps2P 30S ribosomal p 21.6 1.1E+02 0.0023 27.4 3.4 33 118-150 113-147 (204)
497 PF05762 VWA_CoxE: VWA domain 21.5 2E+02 0.0043 25.9 5.3 37 9-45 151-188 (222)
498 PF00391 PEP-utilizers: PEP-ut 21.4 1.2E+02 0.0026 22.3 3.1 28 118-145 29-58 (80)
499 PRK08558 adenine phosphoribosy 21.3 1.4E+02 0.003 27.4 4.2 38 107-146 101-140 (238)
500 COG2099 CobK Precorrin-6x redu 21.3 1.2E+02 0.0027 27.9 3.8 39 106-146 55-99 (257)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=9.1e-72 Score=556.36 Aligned_cols=475 Identities=59% Similarity=1.081 Sum_probs=364.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+++|+|++||++|++.||+.|+.||+.|||++++.+...+..........+..++|+.+|+|...++++++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 68999999999999999999999999999999999999887766655432111122499999998866567887655433
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
..+...+...+......+.+.+++++++.+.+++|||+|.++.|+..+|+++|||++.|++++++....+.+........
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 167 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHL 167 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccc
Confidence 33322344455556667778888888763357899999999999999999999999999999998887655433222111
Q ss_pred CCCCCCcccccCCCCCccccccccCchhhh----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC
Q 011490 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG 243 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 243 (484)
.......+..+||+|+...++..+++.++. ...+...+.+....++++++|||.+||+.+++++...++++++.||
T Consensus 168 ~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VG 247 (491)
T PLN02534 168 SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVG 247 (491)
T ss_pred cCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEEC
Confidence 111222345689988654567777776542 2333333333334567899999999999999999877778899999
Q ss_pred cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 011490 244 PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKG 323 (484)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (484)
|++.......+...+......++++|.+|||.+++++||||||||.....++++.+++.+|+.++.+|||+++......+
T Consensus 248 PL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~ 327 (491)
T PLN02534 248 PVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSE 327 (491)
T ss_pred cccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccc
Confidence 99753211100000011111123569999999998899999999999999999999999999999999999985321111
Q ss_pred chhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcc
Q 011490 324 LEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 403 (484)
Q Consensus 324 ~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~ 403 (484)
..++++|++|.++..+.|+++.+|+||..||+|+++++|||||||||++||+++|||||++|++.||+.||++++|.+|+
T Consensus 328 ~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~v 407 (491)
T PLN02534 328 LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRI 407 (491)
T ss_pred hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcc
Confidence 22222689998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 011490 404 GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 404 g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 482 (484)
|+.+.......|.++++.+..+++++|.++|+++|.+ +++++++|+||++|++.+++++.+||||+.++++|++.|.++
T Consensus 408 Gv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 408 GVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred eEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9998644333333221111248999999999999973 467889999999999999999999999999999999999865
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-69 Score=539.58 Aligned_cols=458 Identities=34% Similarity=0.612 Sum_probs=355.6
Q ss_pred CCCC-CCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCC
Q 011490 1 MASQ-AGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGL 79 (484)
Q Consensus 1 m~~~-~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 79 (484)
|.+. ..+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... ...+++++.+|+|.. +++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCC
Confidence 4444 2338999999999999999999999999999999999999988876655421 112589998887765 478
Q ss_pred CCCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHh
Q 011490 80 PEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~ 159 (484)
+++.+....... +.+..+......+.+.+.+++++.+.+++|||+|.++.|+..+|+++|||++.|++++++.+..+.+
T Consensus 76 PdG~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLPP-SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcch-hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 877665433321 3344455666677778888887644567999999999999999999999999999999999999888
Q ss_pred hhhcccCCC-CCCCCc---ccccCCCCCccccccccCchhhh-------hhhhHHHHHHhhhcccEEEeccccccCHHHH
Q 011490 160 LSVSKAHES-VSSDSE---YFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEEMEPAYV 228 (484)
Q Consensus 160 ~~~~~~~~~-~~~~~~---~~~~Pg~~~~~~l~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 228 (484)
+....+... ...... ...+||++. ++.++++.+++ ...++.+.......++++++|||.+||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 754322211 011111 124678775 67777776553 1222222223345677899999999999999
Q ss_pred HHHHhccC-CceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhC
Q 011490 229 EEYKNARD-GKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEAT 307 (484)
Q Consensus 229 ~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 307 (484)
+++...++ ++++.|||+++..........++...+..+++|.+||+.+++++||||||||+...+.+++.+++.+|+..
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 99987665 68999999975321100000011101112457999999999889999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCC-CCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc
Q 011490 308 KKPFIWVIRPGDQA-KGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 308 ~~~~i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 386 (484)
+++|||+++..... ..... +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 312 ~~~flw~~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 312 GVHFIWCVKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred CCcEEEEECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 99999999853221 11223 8899988888999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCC
Q 011490 387 FADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGG 466 (484)
Q Consensus 387 ~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg 466 (484)
++||+.||++++|++|+|+.+...+ .+.++.+++.++|+++|.+ +++||+||+++++.+++++++||
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~gG 456 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKERG 456 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999866899999995320 1246899999999999942 24999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhh
Q 011490 467 SSYLNIKLLIKDILQQ 482 (484)
Q Consensus 467 ~~~~~~~~~~~~~~~~ 482 (484)
|++.++++|++.|.++
T Consensus 457 SS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 457 SSVKDLDGFVKHVVEL 472 (477)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999999876
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-67 Score=532.53 Aligned_cols=465 Identities=45% Similarity=0.833 Sum_probs=347.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcc--cCCCceEEEEeeCCCccCCCCCCCCc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGI--QSGLRIQVIEFYFPCQEVGLPEGCES 85 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~--~~~~~i~~~~i~~~~~~~~~~~~~~~ 85 (484)
++||+|+|+|++||++|++.||+.|++|||+|||++++.+.+.+++...... ..+..+++..+++|..+++++++.+.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5699999999999999999999999999999999999988876665533211 11223566666666554467766443
Q ss_pred cCCCC---c---cchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHh
Q 011490 86 WDKLP---S---MALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (484)
Q Consensus 86 ~~~~~---~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~ 159 (484)
....+ . ..+...+......+.+.+++++++ .+||+||+|.++.|+..+|+++|||+++|++++++..+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHH
Confidence 32111 1 122333444455677888888877 789999999999999999999999999999999888776654
Q ss_pred hhhcccCCCCCCCCcccccCCCCCccccccccCchhhh---hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccC
Q 011490 160 LSVSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARD 236 (484)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 236 (484)
..................+||+|..+.++..+++..-. +..+.....+...+++++++||+.+||+.+.+.+.+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~ 242 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVA 242 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccC
Confidence 43222111111111223478887433334334432111 334444455556778899999999999998888877666
Q ss_pred CceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEe
Q 011490 237 GKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIR 316 (484)
Q Consensus 237 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (484)
.++++|||+............++...+.++.+|.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+++
T Consensus 243 ~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~ 322 (482)
T PLN03007 243 KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVR 322 (482)
T ss_pred CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 78999999865322110000011111123467999999998889999999999988899999999999999999999998
Q ss_pred CCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHH
Q 011490 317 PGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKL 396 (484)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 396 (484)
......+...+ +|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 323 ~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~ 401 (482)
T PLN03007 323 KNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKL 401 (482)
T ss_pred cCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHH
Confidence 64321111223 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 011490 397 VVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLI 476 (484)
Q Consensus 397 ~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 476 (484)
+++.+++|+.+...+.... +...+++++|+++|+++|.| +++++||+||+++++.+++++.+||||+.++++|+
T Consensus 402 ~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v 475 (482)
T PLN03007 402 VTQVLRTGVSVGAKKLVKV-----KGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFM 475 (482)
T ss_pred HHHhhcceeEecccccccc-----ccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 8766777777642100000 01258999999999999986 56889999999999999999999999999999999
Q ss_pred HHHHh
Q 011490 477 KDILQ 481 (484)
Q Consensus 477 ~~~~~ 481 (484)
+.+.+
T Consensus 476 ~~~~~ 480 (482)
T PLN03007 476 EELNS 480 (482)
T ss_pred HHHHh
Confidence 99875
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.5e-67 Score=522.35 Aligned_cols=434 Identities=27% Similarity=0.445 Sum_probs=342.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH-HCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~-~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+.||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+... ...+++++.+|+|..+ ++++...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCc--
Confidence 56999999999999999999999998 78999999999987665533211 1125899998876542 4431110
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc-c
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK-A 165 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~-~ 165 (484)
.....+......+.+.+++++++...+|++||+|.++.|+..+|+++|||++.|++++++.++.+.+.+... .
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 112233344446677888888764357899999999999999999999999999999998887766654321 1
Q ss_pred CCC-CCCCCcccccCCCCCccccccccCchhhh-----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhc-----
Q 011490 166 HES-VSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNA----- 234 (484)
Q Consensus 166 ~~~-~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~----- 234 (484)
... ...+.++..+||+++ ++..+++..+. ...++....+.+.+++++++|||.+||+.+++++...
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 110 001113456888876 66667775332 1223333334556788999999999999999887642
Q ss_pred -cCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEE
Q 011490 235 -RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIW 313 (484)
Q Consensus 235 -~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (484)
.+++++.|||++...... ..+++|.+||+.+++++||||||||...++.+++.+++.+|+.++++|||
T Consensus 229 ~~~~~v~~VGPl~~~~~~~-----------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQSS-----------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccCCceEEecCccCCcCCC-----------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 135799999997532110 12456999999998889999999999999999999999999999999999
Q ss_pred EEeCCCC---------------CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcC
Q 011490 314 VIRPGDQ---------------AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNG 378 (484)
Q Consensus 314 ~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 378 (484)
++++... .+++.++ +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~G 376 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGG 376 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcC
Confidence 9974211 0112234 89999999999999999999999999999999999999999999999999
Q ss_pred CCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 379 LPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 379 vP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
||||++|+++||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.| ++++.+|++++++++++
T Consensus 377 VP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~~-~~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 377 VPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMVE-EEGEEMRRKVKKLRDTA 444 (481)
T ss_pred CCEEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH
Confidence 99999999999999999995599999999753 1258999999999999986 47889999999999999
Q ss_pred HHHHh--hCCChHHHHHHHHHHHHh
Q 011490 459 KTAIE--EGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 459 ~~~~~--~gg~~~~~~~~~~~~~~~ 481 (484)
++++. +||||+.++++|++.+..
T Consensus 445 ~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 445 EMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHH
Confidence 99994 699999999999999875
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8.3e-67 Score=517.22 Aligned_cols=431 Identities=23% Similarity=0.378 Sum_probs=335.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+++|+|++||++|++.||+.|++|||+|||++++.+...+.+.. .....+++..++.+.. ++++++.+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCccccc
Confidence 789999999999999999999999999999999999887766554421 1112477877766532 36666543221
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
... ......+......+.+.+++++++ .++||||+| ++.|+..+|+++|||++.|++++++... +.+.+. .
T Consensus 79 ~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 79 DIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 111 012233445566788889999988 789999999 5789999999999999999999988653 333221 1
Q ss_pred CCCCCCcccccCCCCCc-cccccccCchhhh----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEe
Q 011490 168 SVSSDSEYFLVPGLPDR-VEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCV 242 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~-~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 242 (484)
.. ...+||+|.. +.++..+++.+.. +..+...+.+...+++++++|||.+||+.+++++.+.++++++.|
T Consensus 150 ~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~v 224 (442)
T PLN02208 150 KL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLT 224 (442)
T ss_pred cc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEE
Confidence 01 1225788752 2345555553211 233333333455678899999999999999999988777899999
Q ss_pred CcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 011490 243 GPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAK 322 (484)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (484)
||+....... ...+++|.+|||.+++++||||||||...++.+++.+++.+++..+.+++|+++.+....
T Consensus 225 Gpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~ 294 (442)
T PLN02208 225 GPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS 294 (442)
T ss_pred eecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc
Confidence 9997542200 012568999999998889999999999999999999999999888999999998642111
Q ss_pred CchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhc
Q 011490 323 GLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR 402 (484)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 402 (484)
....+ +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|
T Consensus 295 ~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 295 TVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred chhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 11223 89999999999999999999999999999999999999999999999999999999999999999999865699
Q ss_pred ceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 403 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 403 ~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
+|+.++..+ ++.+++++|+++|+++|+|+ ++++++|+|++++++.+. +||||..++++|++.+.+
T Consensus 374 ~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 374 VSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred eeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 999997541 12499999999999999876 568899999999999973 478999999999999976
Q ss_pred h
Q 011490 482 Q 482 (484)
Q Consensus 482 ~ 482 (484)
+
T Consensus 440 ~ 440 (442)
T PLN02208 440 Y 440 (442)
T ss_pred h
Confidence 4
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-66 Score=516.35 Aligned_cols=434 Identities=26% Similarity=0.462 Sum_probs=331.9
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLP 80 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 80 (484)
|+.+.. +.||+++|+|++||++|++.||+.|+.||+.|||++++.+... .. ....++++..+|. ++|
T Consensus 1 ~~~~~~-~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~-----glp 67 (451)
T PLN02410 1 MEEKPA-RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPE-----SLP 67 (451)
T ss_pred CCcCCC-CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCC-----CCC
Confidence 776666 8899999999999999999999999999999999999876421 10 1112588888762 555
Q ss_pred CCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhc----CCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHH
Q 011490 81 EGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI----QPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLC 156 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~ 156 (484)
++... .. .....+......+...+++++++. +.+++|||+|.++.|+..+|+++|||++.|++++++.+..
T Consensus 68 ~~~~~--~~---~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~ 142 (451)
T PLN02410 68 ESDFK--NL---GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVC 142 (451)
T ss_pred ccccc--cc---CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHH
Confidence 43111 01 112222222234455566665542 2467999999999999999999999999999999999877
Q ss_pred HHhhhhcc------cCCCCCCCCcccccCCCCCccccccccCchhhh-----hhhhHHHHHHhhhcccEEEeccccccCH
Q 011490 157 LHSLSVSK------AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEEMEP 225 (484)
Q Consensus 157 ~~~~~~~~------~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 225 (484)
+.+.+... +..... ......+||+++ ++.++++.... ...++.... ...+++++++|||.+||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 143 RSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLES 217 (451)
T ss_pred HHHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhH
Confidence 76643221 111110 112345888876 56666665432 122222211 245788999999999999
Q ss_pred HHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHH
Q 011490 226 AYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLE 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 305 (484)
.+++++....++++++|||+....... ...+....+|.+|||.+++++||||||||....+.+++.+++.+|+
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 999999877777999999997542110 0001123468899999988899999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCC-CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecc
Q 011490 306 ATKKPFIWVIRPGDQ-AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW 384 (484)
Q Consensus 306 ~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 384 (484)
.++.+|||+++.+.. ..+..+. +|++|.++... |..+.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 291 ~s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~~-~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 291 SSNQQFLWVIRPGSVRGSEWIES-LPKEFSKIISG-RGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred hcCCCeEEEEccCcccccchhhc-CChhHHHhccC-CeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 999999999985321 1111111 78899888754 45666999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 011490 385 PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEE 464 (484)
Q Consensus 385 P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~ 464 (484)
|++.||+.||+++++.+|+|+.++ . .+++++|+++|+++|.+++ +++||++|+++++++++++++
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~-~-------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVE-G-------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeC-C-------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999975669999997 3 4899999999999998754 889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHh
Q 011490 465 GGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 465 gg~~~~~~~~~~~~~~~ 481 (484)
|||++.++++|++.+..
T Consensus 434 gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 434 GGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999864
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-66 Score=510.23 Aligned_cols=433 Identities=24% Similarity=0.420 Sum_probs=336.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... .....+..+.+..+|. . ++++++.+...
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~--~-~glp~g~e~~~ 79 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPH--V-DGLPVGTETVS 79 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCC--c-CCCCCcccccc
Confidence 57999999999999999999999999999999999999876655442 1001111255555553 2 36776644332
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
.... .....+..+...+.+.+++++++ .++|+||+|. +.|+..+|+++|||++.|++++++.+.++.+ +. .
T Consensus 80 ~~~~-~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~----~ 150 (453)
T PLN02764 80 EIPV-TSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG----G 150 (453)
T ss_pred cCCh-hHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----c
Confidence 2221 23345556666778899999988 6889999995 7899999999999999999999988877653 11 1
Q ss_pred CCCCCCcccccCCCCCc-cccccccCchhhh---------hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCC
Q 011490 168 SVSSDSEYFLVPGLPDR-VEITKAQLPEILK---------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDG 237 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~-~~l~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 237 (484)
.. ...+||+|.. ..++.++++.+.. +..+...+.+...+++++++|||.+||+.+++++....++
T Consensus 151 ~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~ 225 (453)
T PLN02764 151 EL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRK 225 (453)
T ss_pred cC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCC
Confidence 11 1224777631 1234444443211 2233344434456788999999999999999998775557
Q ss_pred ceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeC
Q 011490 238 KVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRP 317 (484)
Q Consensus 238 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 317 (484)
+++.|||+++..... ...+++|.+|||.+++++||||||||....+.+++.++..+|+..+.+|+|+++.
T Consensus 226 ~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 226 KVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred cEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 899999996532100 0124679999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHH
Q 011490 318 GDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLV 397 (484)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~ 397 (484)
....++...+ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 296 ~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l 374 (453)
T PLN02764 296 PRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLL 374 (453)
T ss_pred CCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHH
Confidence 4222222334 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 011490 398 VQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLI 476 (484)
Q Consensus 398 ~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 476 (484)
++.+|+|+.+..++ .+.+++++|+++|+++|+++ ++++++|++++++++.++ +|||++.++++|+
T Consensus 375 ~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv 440 (453)
T PLN02764 375 SDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFI 440 (453)
T ss_pred HHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 65689999875330 12589999999999999876 568899999999999984 6899999999999
Q ss_pred HHHHhhcC
Q 011490 477 KDILQQAK 484 (484)
Q Consensus 477 ~~~~~~~~ 484 (484)
+.+.++++
T Consensus 441 ~~~~~~~~ 448 (453)
T PLN02764 441 ESLQDLVS 448 (453)
T ss_pred HHHHHhcc
Confidence 99998753
No 8
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.1e-66 Score=511.45 Aligned_cols=436 Identities=28% Similarity=0.453 Sum_probs=341.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHC-CCeEEEEeCCCchhhh--hHHHhhcccCCCceEEEEeeCCCccCCC-CCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARF--QNVIERGIQSGLRIQVIEFYFPCQEVGL-PEGC 83 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~r-Gh~V~~~~~~~~~~~v--~~~~~~~~~~~~~i~~~~i~~~~~~~~~-~~~~ 83 (484)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+ ...+.... ...+++++.+|++..+ ++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~-~l~~~~- 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVD-NLVEPD- 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccc-cCCCCC-
Confidence 5799999999999999999999999987 9999999887655433 11111110 1125999999865432 33 111
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCC-cEEEecchHHHHHHHHhhhh
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVP-RIVFHGFSCFCLLCLHSLSV 162 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~ 162 (484)
. +....+......+.+.+++++++...+++|||+|.+++|+..+|+++||| .++|++++++....+++.+.
T Consensus 80 -------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 80 -------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred -------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 1 23334555666788889999987434789999999999999999999999 58888888888777776653
Q ss_pred cc-cCCC-CCCCCcccccCCCCCccccccccCchhhh------hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhc
Q 011490 163 SK-AHES-VSSDSEYFLVPGLPDRVEITKAQLPEILK------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNA 234 (484)
Q Consensus 163 ~~-~~~~-~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 234 (484)
.. .... ......+..+||+|+ ++..+++..+. +..+. ...+...+++++++|||.+||+.+++.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 152 LDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred hhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 21 1111 001123456899986 77777776442 22233 2223467899999999999999999888764
Q ss_pred c------CCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCC
Q 011490 235 R------DGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATK 308 (484)
Q Consensus 235 ~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~ 308 (484)
+ +++++.|||++..... ..++++|.+|||++++++||||||||...++.+++.+++.+|+.++
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred cccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 2 2569999999742110 0123479999999988899999999999999999999999999999
Q ss_pred CCEEEEEeCCCC--------CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCC
Q 011490 309 KPFIWVIRPGDQ--------AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLP 380 (484)
Q Consensus 309 ~~~i~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP 380 (484)
++|||+++.... .++..++ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP 375 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVP 375 (470)
T ss_pred CcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCC
Confidence 999999974211 1113334 8999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHH
Q 011490 381 MVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAK 459 (484)
Q Consensus 381 ~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~r~~a~~l~~~~~ 459 (484)
||++|+++||+.||+++++.+|+|+.+.... ..+.+++++|+++|+++|.+ +++++++|+||++|+++++
T Consensus 376 ~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~ 446 (470)
T PLN03015 376 IVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSE 446 (470)
T ss_pred EEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999977999999996210 01269999999999999963 3678899999999999999
Q ss_pred HHHhhCCChHHHHHHHHHHH
Q 011490 460 TAIEEGGSSYLNIKLLIKDI 479 (484)
Q Consensus 460 ~~~~~gg~~~~~~~~~~~~~ 479 (484)
+++++||||+.++++|++.+
T Consensus 447 ~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 447 RAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHhcCCCcHHHHHHHHHHhc
Confidence 99999999999999999876
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.6e-66 Score=512.53 Aligned_cols=451 Identities=27% Similarity=0.478 Sum_probs=336.7
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH--Hhhc--ccCCC-ceEEEEeeCCCc
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV--IERG--IQSGL-RIQVIEFYFPCQ 75 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~--~~~~--~~~~~-~i~~~~i~~~~~ 75 (484)
|.++.. +.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+... .... ...+. .++|..+|
T Consensus 1 ~~~~~~-~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---- 75 (480)
T PLN02555 1 MESESS-LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---- 75 (480)
T ss_pred CCCCCC-CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----
Confidence 777777 89999999999999999999999999999999999999777655431 1000 00111 24555443
Q ss_pred cCCCCCCCCccCCCCccchHHHHHHHH-HHchHHHHHHHHhc---CCCCeEEEecCCCcchHHHHHHcCCCcEEEecchH
Q 011490 76 EVGLPEGCESWDKLPSMALLPKFFAAI-EMLRLPLETLFKEI---QPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (484)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~---~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~ 151 (484)
++++++.+.. . +. ..+.... ..+.+.+++++++. +.+++|||+|.++.|+..+|+++|||+++|+++++
T Consensus 76 -dglp~~~~~~---~--~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a 148 (480)
T PLN02555 76 -DGWAEDDPRR---Q--DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSC 148 (480)
T ss_pred -CCCCCCcccc---c--CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccH
Confidence 3565543211 1 22 2333333 24566777777643 13349999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcc-cCCCCCCCCcccccCCCCCccccccccCchhhh-------hhhhHHHHHHhhhcccEEEecccccc
Q 011490 152 FCLLCLHSLSVSK-AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEEM 223 (484)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~l 223 (484)
+.+..+++.+... .......+..+..+||+|. ++.++++.++. ..+.+.+..+...+++++++|||.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 149 ACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHH
Confidence 9998887764321 1111111123356899986 67777776543 11222223344567889999999999
Q ss_pred CHHHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHH
Q 011490 224 EPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLG 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a 303 (484)
|+.+++.+.... + ++.|||+......... ......+..+++|.+||+.+++++||||||||+...+.+++.+++.+
T Consensus 226 E~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 226 EKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred hHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 999998886643 4 9999999754211100 00011112346799999999888899999999999999999999999
Q ss_pred HHhCCCCEEEEEeCCCCCCCc-hhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEe
Q 011490 304 LEATKKPFIWVIRPGDQAKGL-EDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMV 382 (484)
Q Consensus 304 l~~~~~~~i~~~~~~~~~~~~-~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 382 (484)
++..+++|||+++........ ..+ +|+++.++. .+|+.+.+|+||.+||.|+++++|||||||||++||+++|||||
T Consensus 302 l~~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l 379 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVV 379 (480)
T ss_pred HHhcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEE
Confidence 999999999999753211001 112 788887664 45667789999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 011490 383 TWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAI 462 (484)
Q Consensus 383 ~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~ 462 (484)
++|+++||+.||+++++.+|+|+.+...+ ...+.++.++|.++|+++|.+ ++++++|+||++|++++++++
T Consensus 380 ~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~--------~~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~ 450 (480)
T PLN02555 380 CFPQWGDQVTDAVYLVDVFKTGVRLCRGE--------AENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAV 450 (480)
T ss_pred eCCCccccHHHHHHHHHHhCceEEccCCc--------cccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999976779999995310 001258999999999999975 578899999999999999999
Q ss_pred hhCCChHHHHHHHHHHHHh
Q 011490 463 EEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 463 ~~gg~~~~~~~~~~~~~~~ 481 (484)
++|||++.++++||++|.+
T Consensus 451 ~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 451 AEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred cCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999874
No 10
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.1e-66 Score=511.13 Aligned_cols=433 Identities=25% Similarity=0.412 Sum_probs=334.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+|+|+|++||++|++.||+.|+++|++|||++++.+...+..... ....++|+.+++|.. ++++++.+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCcccccc
Confidence 8899999999999999999999999999999999999887665544310 112488888876643 37776643322
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
.... .....+......+.+.++++++. .+||+||+|. +.|+..+|+++|||++.|++++++..+++.+...
T Consensus 79 ~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~----- 149 (446)
T PLN00414 79 DLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA----- 149 (446)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-----
Confidence 2221 12334455556777888888877 7899999995 7899999999999999999999988877665211
Q ss_pred CCCCCCcccccCCCCCc-ccccccc--Cchhhh-hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC
Q 011490 168 SVSSDSEYFLVPGLPDR-VEITKAQ--LPEILK-LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG 243 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~-~~l~~~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 243 (484)
.. ...+||+|.. +.++..+ ++.++. ....+....+...+++++++|||.+||+.+++++...++++++.||
T Consensus 150 ~~-----~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VG 224 (446)
T PLN00414 150 EL-----GFPPPDYPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTG 224 (446)
T ss_pred hc-----CCCCCCCCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEc
Confidence 00 0124666531 1122222 223222 1122333345556788999999999999999988876667899999
Q ss_pred cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 011490 244 PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKG 323 (484)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (484)
|+.+..... . . ...+++|.+|||++++++||||||||....+.+++.++..+|+..+.+|+|+++......+
T Consensus 225 Pl~~~~~~~-~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~ 296 (446)
T PLN00414 225 PMLPEPQNK-S----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSST 296 (446)
T ss_pred ccCCCcccc-c----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCccc
Confidence 997532110 0 0 0113568999999999999999999999999999999999999999999999986422222
Q ss_pred chhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcc
Q 011490 324 LEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 403 (484)
Q Consensus 324 ~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~ 403 (484)
...+ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++++|+
T Consensus 297 ~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~ 375 (446)
T PLN00414 297 VQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEV 375 (446)
T ss_pred chhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCe
Confidence 3334 899999999999999999999999999999999999999999999999999999999999999999999768999
Q ss_pred eeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 011490 404 GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 404 g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 482 (484)
|+.+...+ ++.+++++|+++++++|+|+ ++++++|++++++++.+. ++|||+.. +++|++.+.+.
T Consensus 376 g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss~-l~~~v~~~~~~ 441 (446)
T PLN00414 376 SVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSGY-ADKFVEALENE 441 (446)
T ss_pred EEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHHH-HHHHHHHHHHh
Confidence 99996431 12589999999999999865 567889999999999974 55884433 89999999754
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-65 Score=515.42 Aligned_cols=443 Identities=28% Similarity=0.478 Sum_probs=341.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCC----CeEEEEeCCCch----hhhhHHHhhcccCCCceEEEEeeCCCccCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG----ALVTIVTTPMNA----ARFQNVIERGIQSGLRIQVIEFYFPCQEVGL 79 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rG----h~V~~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 79 (484)
+.||+|+|+|++||++|++.||+.|+.|| +.|||++++.+. ..+...+......+.+++++.+|++. .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~ 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE----P 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----C
Confidence 57999999999999999999999999997 789999986542 23443332111122259999987542 2
Q ss_pred CCCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHh
Q 011490 80 PEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~ 159 (484)
+++.+ .....+......+.+.+++++++...+++|||+|.++.|+..+|+++|||++.|++++++.+.++.+
T Consensus 79 p~~~e--------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 79 PTDAA--------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCccc--------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 22211 1112222344567778888888732356999999999999999999999999999999999988877
Q ss_pred hhhcccC--CCCCCCCcccccCCCCCccccccccCchhhh-----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHH
Q 011490 160 LSVSKAH--ESVSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYK 232 (484)
Q Consensus 160 ~~~~~~~--~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 232 (484)
.+..... ........+..+||++. ++..+++.++. ...++....+.+.+++++++|||.+||+.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 6542111 00111012345888876 67777776442 11222233345567889999999999999999887
Q ss_pred hcc------CCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHh
Q 011490 233 NAR------DGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEA 306 (484)
Q Consensus 233 ~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~ 306 (484)
... .++++.|||+....... . ....+++|.+||+.+++++||||||||....+.+++.+++.+|+.
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~-------~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTP-------P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred hccccccCCCCceEEeCCCccccccC-------C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 642 25899999997432110 0 011356799999999989999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCC-------CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCC
Q 011490 307 TKKPFIWVIRPGDQ-------AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGL 379 (484)
Q Consensus 307 ~~~~~i~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 379 (484)
.+.+|||+++.... .....++ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GV 378 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGV 378 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCC
Confidence 99999999985321 0122334 889999999999999999999999999999999999999999999999999
Q ss_pred CEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHH
Q 011490 380 PMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGE-ERDERRRRAREYGETA 458 (484)
Q Consensus 380 P~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~r~~a~~l~~~~ 458 (484)
|||++|+++||+.||+++++.+|+|+.+...+ .+++.+++++|.++|+++|.|++ +++.+|++|++|++++
T Consensus 379 P~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~ 450 (480)
T PLN00164 379 PMAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAAC 450 (480)
T ss_pred CEEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999998766799999986431 00124799999999999998876 4889999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHHhh
Q 011490 459 KTAIEEGGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 459 ~~~~~~gg~~~~~~~~~~~~~~~~ 482 (484)
++++++|||++.++++|++.|.+.
T Consensus 451 ~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 451 RKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999764
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=9.2e-66 Score=513.13 Aligned_cols=440 Identities=28% Similarity=0.471 Sum_probs=331.0
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHH--HHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARL--LAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVG 78 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~--L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~ 78 (484)
|++..+++.||+|+|+|++||++|++.||++ |++||++|||++++.+.+.++.. . .....+++..+| ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~-~---~~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTV-E---KPRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccc-c---CCCCceEEEECC-----CC
Confidence 6666555789999999999999999999999 55999999999999876655332 1 011235555443 35
Q ss_pred CCCCCCccCCCCccchHHHHHHHH-HHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 011490 79 LPEGCESWDKLPSMALLPKFFAAI-EMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~ 157 (484)
++++.. . ... .+.... ..+.+.+++++++ .+||+||+|.++.|+..+|+++|||++.|++.++..+..+
T Consensus 72 lp~~~~-----~--~~~-~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 72 LPKDDP-----R--APE-TLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCcc-----c--CHH-HHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 655431 1 112 233333 3556778888888 7899999999999999999999999999999999888877
Q ss_pred Hhhhhc-ccCCCCCCCCcccccCCCCCccccccccCchhhh------hhhhHHHHHHhhhcccEEEeccccccCHHHHHH
Q 011490 158 HSLSVS-KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEE 230 (484)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 230 (484)
.+.+.. .......+......+|++++ ++.++++.++. +..+...+.+....++++++||+.+||+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 218 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIES 218 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHH
Confidence 765321 11111111112345788875 56667766443 222333343444567899999999999999988
Q ss_pred HHhccCCceEEeCcccCCC---cccchh-hccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHh
Q 011490 231 YKNARDGKVWCVGPVSLCN---KEDIDK-LERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEA 306 (484)
Q Consensus 231 ~~~~~~~~~~~vGp~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~ 306 (484)
+.. . +++++|||+++.. ...... .......+..+.+|.+||+.++++++|||||||....+.+++.+++.+|+.
T Consensus 219 l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~ 296 (456)
T PLN02210 219 MAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKN 296 (456)
T ss_pred Hhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 766 3 6899999997421 100000 000001122356789999999888999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc
Q 011490 307 TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 386 (484)
.+.+|||+++...... .++.+.++...++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 297 ~~~~flw~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~ 370 (456)
T PLN02210 297 RGVPFLWVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPS 370 (456)
T ss_pred CCCCEEEEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 9999999998642111 2344555543344567799999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCC
Q 011490 387 FADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGG 466 (484)
Q Consensus 387 ~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg 466 (484)
++||+.||++++|.+|+|+.+...+ .++.+++++|+++|+++|.| ++++++|+||++|++.+++++++||
T Consensus 371 ~~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gG 440 (456)
T PLN02210 371 WTDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGG 440 (456)
T ss_pred ccccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999964499999996431 01368999999999999976 5577899999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 011490 467 SSYLNIKLLIKDIL 480 (484)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (484)
||+.++++|++.|.
T Consensus 441 SS~~~l~~~v~~~~ 454 (456)
T PLN02210 441 SSARNLDLFISDIT 454 (456)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999999885
No 13
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.8e-65 Score=503.43 Aligned_cols=426 Identities=25% Similarity=0.447 Sum_probs=327.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC-Ccc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC-ESW 86 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~-~~~ 86 (484)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...+++++.+| ++++++. +..
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~~~ 73 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFSSA 73 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccccc
Confidence 67999999999999999999999999999999999998765544221 12359999886 3566532 211
Q ss_pred CCCCccchHHHHHHHH-HHchHHHHHHHHhc--CCCC-eEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhh
Q 011490 87 DKLPSMALLPKFFAAI-EMLRLPLETLFKEI--QPKP-SCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSV 162 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~--~~~~-D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 162 (484)
. . ...+.... ..+.+.+++++++. ..+| +|||+|.++.|+..+|+++|||++.|++++++....+++...
T Consensus 74 ---~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~ 147 (449)
T PLN02173 74 ---G--S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI 147 (449)
T ss_pred ---c--C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh
Confidence 1 2 22333333 35677778777753 1245 999999999999999999999999999998888765543211
Q ss_pred cccCCCCCCCCcccccCCCCCccccccccCchhhh-------hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhcc
Q 011490 163 SKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNAR 235 (484)
Q Consensus 163 ~~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 235 (484)
.. ......+||+|+ ++.++++.++. ...++....+...+++++++|||.+||+.+++++...
T Consensus 148 ---~~----~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 216 (449)
T PLN02173 148 ---NN----GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV- 216 (449)
T ss_pred ---cc----CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-
Confidence 00 112345788876 66677776543 1122222234556788999999999999999888653
Q ss_pred CCceEEeCcccCCCc---cc-chhhccCCCCC-CCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCC
Q 011490 236 DGKVWCVGPVSLCNK---ED-IDKLERGDKTS-NDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKP 310 (484)
Q Consensus 236 ~~~~~~vGp~~~~~~---~~-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 310 (484)
++++.|||+++... .. .........+. ..+++|.+||+.++++++|||||||+...+.+++.+++.+| .+.+
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred -CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 46999999964210 00 00000000010 12346999999999899999999999999999999999999 6788
Q ss_pred EEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccch
Q 011490 311 FIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 390 (484)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 390 (484)
|+|+++..... . +|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 294 flWvvr~~~~~----~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 294 YLWVVRASEES----K--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred EEEEEeccchh----c--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 99999853211 1 78888888777899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 011490 391 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYL 470 (484)
Q Consensus 391 ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~ 470 (484)
+.||+++++.+|+|+.+...+ .++.++.++|+++|+++|.| ++++++|+||+++++++++++++|||+++
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS~~ 437 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGSTDI 437 (449)
T ss_pred hHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999999976679999986541 01247999999999999986 45689999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011490 471 NIKLLIKDIL 480 (484)
Q Consensus 471 ~~~~~~~~~~ 480 (484)
++++|++.+.
T Consensus 438 ~l~~~v~~~~ 447 (449)
T PLN02173 438 NINTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3e-65 Score=505.16 Aligned_cols=430 Identities=25% Similarity=0.463 Sum_probs=325.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCC--CeEEE--EeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTI--VTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rG--h~V~~--~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
+.||+++|+|++||++|++.||+.|+.+| +.|++ ++++.+...+...+.......++++++.+|++.- .+...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 57999999999999999999999999998 44555 5555443333322222111123599999875421 11111
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcC--CCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhh
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQ--PKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLS 161 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 161 (484)
. . .......+......+...+.+++++.. .+++|||+|.++.|+..+|+++|||++.|++++++.++++.+.+
T Consensus 80 ~--~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 T--S---RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred c--c---ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1 1 112222333344456666677777531 24599999999999999999999999999999999998888765
Q ss_pred hcccCC-CCC-CCCcccccCCCCCccccccccCchhhh-----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhc
Q 011490 162 VSKAHE-SVS-SDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNA 234 (484)
Q Consensus 162 ~~~~~~-~~~-~~~~~~~~Pg~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 234 (484)
...... ... ....+..+||+|. ++.++++.+++ ...++....+.+.+++++++|||.+||+.+++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 321110 000 1112356889986 77778887653 1233344445556788999999999999999988765
Q ss_pred cC-CceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEE
Q 011490 235 RD-GKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIW 313 (484)
Q Consensus 235 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (484)
++ ++++.|||++...... . ... ..+.+|.+|||.+++++||||||||...++.+++.+++.+|+.++++|||
T Consensus 232 ~~~~~v~~vGPl~~~~~~~-~----~~~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIE-D----RND--NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCCEEEEeeeccCcccc-c----ccc--chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 43 6899999997432100 0 000 11356999999998889999999999999999999999999999999999
Q ss_pred EEeCCCC----CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccc
Q 011490 314 VIRPGDQ----AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFAD 389 (484)
Q Consensus 314 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 389 (484)
+++.... ..+...| +|++|.++.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 305 ~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 305 VVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 9985311 0123334 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChH
Q 011490 390 QFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSY 469 (484)
Q Consensus 390 Q~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~ 469 (484)
|+.||+++++++|+|+.++..+ .+.+++++|+++|+++|+|+ .||+|++++++..++++++||||+
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~ 449 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSH 449 (451)
T ss_pred chhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999964689999997531 12579999999999999876 899999999999999999999986
Q ss_pred H
Q 011490 470 L 470 (484)
Q Consensus 470 ~ 470 (484)
.
T Consensus 450 ~ 450 (451)
T PLN03004 450 T 450 (451)
T ss_pred C
Confidence 4
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-64 Score=503.09 Aligned_cols=448 Identities=27% Similarity=0.469 Sum_probs=337.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+.... ...+++++.+|+|..+ +++++.+...
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~d-glp~~~~~~~ 81 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVP-GLPSSAESST 81 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccC-CCCCCccccc
Confidence 68999999999999999999999999999999999999877665542111 1225999999987653 7776544322
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
.... .....+......+.+.+++++++ .+++|||+|.++.|+..+|+++|||++.|++++++..+.+.+........
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 82 DVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred ccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 2211 11223445556778888999988 68999999999999999999999999999999998887765443211111
Q ss_pred CCCCCCcc-cccCCCCC---ccccccccCchhhh--------hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhcc
Q 011490 168 SVSSDSEY-FLVPGLPD---RVEITKAQLPEILK--------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNAR 235 (484)
Q Consensus 168 ~~~~~~~~-~~~Pg~~~---~~~l~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 235 (484)
......+. ..+|++.+ .+.++.++++.++. ...+. .....+.+++++++|||.+||+.+++.+...+
T Consensus 159 ~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~ 237 (472)
T PLN02670 159 DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY 237 (472)
T ss_pred cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHHhh
Confidence 11111111 12454422 11245556666542 11222 22234567889999999999999999997766
Q ss_pred CCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEE
Q 011490 236 DGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVI 315 (484)
Q Consensus 236 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (484)
+++++.|||+.+..... ... ..... ...++|.+|||.+++++||||||||+..++.+++.+++.+|+.++++|||++
T Consensus 238 ~~~v~~VGPl~~~~~~~-~~~-~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~ 314 (472)
T PLN02670 238 RKPIIPIGFLPPVIEDD-EED-DTIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVL 314 (472)
T ss_pred CCCeEEEecCCcccccc-ccc-ccccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 67899999996531100 000 00000 0125699999999888999999999999999999999999999999999999
Q ss_pred eCCCC-CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHH
Q 011490 316 RPGDQ-AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNE 394 (484)
Q Consensus 316 ~~~~~-~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 394 (484)
+.... .....++ +|++|.++.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 315 r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (472)
T PLN02670 315 RNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNT 393 (472)
T ss_pred cCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHH
Confidence 85311 1111223 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 011490 395 KLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKL 474 (484)
Q Consensus 395 ~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~ 474 (484)
+++ +++|+|+.++..+ .++.+++++|+++|+++|.| +++++||+||+++++.+++ .+.....++.
T Consensus 394 ~~v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~ 458 (472)
T PLN02670 394 RLL-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGD----MDRNNRYVDE 458 (472)
T ss_pred HHH-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhC----cchhHHHHHH
Confidence 999 5999999997541 01358999999999999976 5677999999999999883 3445677888
Q ss_pred HHHHHHhh
Q 011490 475 LIKDILQQ 482 (484)
Q Consensus 475 ~~~~~~~~ 482 (484)
+++.+.++
T Consensus 459 ~~~~l~~~ 466 (472)
T PLN02670 459 LVHYLREN 466 (472)
T ss_pred HHHHHHHh
Confidence 88887654
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-64 Score=499.43 Aligned_cols=446 Identities=25% Similarity=0.437 Sum_probs=330.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCCch-hhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTIVTTPMNA-ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rG--h~V~~~~~~~~~-~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 84 (484)
+.||+|+|+|++||++|++.||+.|+.+| ..|||++++.+. ..+...+........+++|+.+|.... .++. .
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~-~ 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL-G 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc-c
Confidence 67999999999999999999999999998 999999988765 333333322111112599999984211 1110 0
Q ss_pred ccCCCCccchHHHHHHHHHHc----hHHHHHHHHhc--CCC-CeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 011490 85 SWDKLPSMALLPKFFAAIEML----RLPLETLFKEI--QPK-PSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~-~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~ 157 (484)
. . .+....+......+ .+.+.+++++. +.+ ++|||+|.++.|+..+|+++|||++.|++++++.+..+
T Consensus 79 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~ 153 (468)
T PLN02207 79 ---G-T-QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMM 153 (468)
T ss_pred ---c-c-cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 0 0 12222333333333 44556666542 113 49999999999999999999999999999999888887
Q ss_pred Hhhhhccc-CCCC--CCCCcccccCCC-CCccccccccCchhhh---hhhhHHHHHHhhhcccEEEeccccccCHHHHHH
Q 011490 158 HSLSVSKA-HESV--SSDSEYFLVPGL-PDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEE 230 (484)
Q Consensus 158 ~~~~~~~~-~~~~--~~~~~~~~~Pg~-~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 230 (484)
.+.+.... .... .....+..+||+ ++ ++..+++.++. ....+.+....+.+++++++||+.+||+.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 154 QYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred HHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 76643211 1111 111133568998 44 77778877553 112222333456778899999999999998888
Q ss_pred HHh-ccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCC
Q 011490 231 YKN-ARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKK 309 (484)
Q Consensus 231 ~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (484)
+.. ...++++.|||++....... +......+++|.+||++++++++|||||||....+.+++.+++.+|+.+++
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~-----~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~ 305 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPH-----PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQY 305 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCC-----CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCC
Confidence 855 33478999999976432110 000001236799999999888999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccc
Q 011490 310 PFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFAD 389 (484)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 389 (484)
+|||+++.... ...+| +|++|.++... |..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 306 ~flW~~r~~~~--~~~~~-lp~~f~er~~~-~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~D 381 (468)
T PLN02207 306 RFLWSLRTEEV--TNDDL-LPEGFLDRVSG-RGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAE 381 (468)
T ss_pred cEEEEEeCCCc--ccccc-CCHHHHhhcCC-CeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcccc
Confidence 99999985321 11234 88999877654 4567799999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChH
Q 011490 390 QFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSY 469 (484)
Q Consensus 390 Q~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~ 469 (484)
|+.||+++++++|+|+.+..+. .+ ..++.+++++|+++|+++|++ ++++||+||+++++.+++++++||||+
T Consensus 382 Q~~Na~~~~~~~gvGv~~~~~~--~~----~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS~ 453 (468)
T PLN02207 382 QQLNAFLMVKELKLAVELKLDY--RV----HSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSSF 453 (468)
T ss_pred chhhHHHHHHHhCceEEEeccc--cc----ccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999998866699999884220 00 001246999999999999962 356999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 011490 470 LNIKLLIKDILQQ 482 (484)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (484)
.++++|++++...
T Consensus 454 ~~l~~~v~~~~~~ 466 (468)
T PLN02207 454 AAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 17
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=9.3e-64 Score=498.29 Aligned_cols=421 Identities=25% Similarity=0.447 Sum_probs=323.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+.+.+...... ..+++|+.+|. +++++.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc----
Confidence 67999999999999999999999999999999999999877655543221 12589988763 232211
Q ss_pred CCCccchHHHHHHHHH-HchHHHHHHHHhcC--CCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 88 KLPSMALLPKFFAAIE-MLRLPLETLFKEIQ--PKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
.. ++ ..+..... .+.+.+++++++.. .+++|||+|.++.|+..+|+++|||++.|++++++.+..+.+.+...
T Consensus 73 --~~-~~-~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 --PR-DF-FSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred --cc-cH-HHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 11 22 23444444 57788888887631 23489999999999999999999999999999998887766654321
Q ss_pred cC---CCCCCC--Ccc-cccCCCCCccccccccCchhhh-------hhhhHHHHHHhhhcccEEEeccccccCHHHHHHH
Q 011490 165 AH---ESVSSD--SEY-FLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEY 231 (484)
Q Consensus 165 ~~---~~~~~~--~~~-~~~Pg~~~~~~l~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 231 (484)
.. ...+.+ ..+ ..+||+|. ++.++++.++. ....+.+..+...+++++++|||.+||+.+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 225 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH 225 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH
Confidence 11 111111 111 25788876 67777776542 1223333344556788999999999999888766
Q ss_pred Hh----ccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCc-cCCHHHHHHHHHHHHh
Q 011490 232 KN----ARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLC-DSSTRQLIELGLGLEA 306 (484)
Q Consensus 232 ~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~~ 306 (484)
.. ...++++.|||+........ +....+..+.+|.+||+.++++++|||||||+. ..+.+++.+++.+++.
T Consensus 226 ~~~~~~~~~~~v~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~ 301 (448)
T PLN02562 226 QASYNNGQNPQILQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEA 301 (448)
T ss_pred HhhhccccCCCEEEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHH
Confidence 43 23578999999976432100 011001123567899999988889999999986 5788999999999999
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc
Q 011490 307 TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 386 (484)
.+.+|||+++.+... . +|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 302 ~g~~fiW~~~~~~~~----~--l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 374 (448)
T PLN02562 302 SGRPFIWVLNPVWRE----G--LPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPV 374 (448)
T ss_pred CCCCEEEEEcCCchh----h--CCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCc
Confidence 999999999753211 1 777887665 467788899999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCC
Q 011490 387 FADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGG 466 (484)
Q Consensus 387 ~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg 466 (484)
++||+.||+++++.+|+|+.+. .++.++|.++|+++|+|+ +||+||++++++++++ .+||
T Consensus 375 ~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~gG 434 (448)
T PLN02562 375 AGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EARL 434 (448)
T ss_pred ccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCCC
Confidence 9999999999964579998883 379999999999999877 9999999999999887 7789
Q ss_pred ChHHHHHHHHHHH
Q 011490 467 SSYLNIKLLIKDI 479 (484)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (484)
||++++++|++++
T Consensus 435 SS~~nl~~~v~~~ 447 (448)
T PLN02562 435 RSMMNFTTLKDEL 447 (448)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999986
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-63 Score=499.61 Aligned_cols=434 Identities=28% Similarity=0.450 Sum_probs=328.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCES 85 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 85 (484)
+.||+|+|+|++||++|++.||++|++| ||+|||++++.+.+.+++... ..+++|+.+|. ++++....
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~~~~ 79 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSELVR 79 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCcccc
Confidence 7999999999999999999999999999 999999999988776665321 13699988873 23332211
Q ss_pred cCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhccc
Q 011490 86 WDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (484)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (484)
. .+....+......+.+.+++++++...++|+||+|.++.|+..+|+++|||++.|+++++..+..+.+.+....
T Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 80 A-----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred c-----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 1 12222222333356777888887633468999999999999999999999999999999988777666543211
Q ss_pred CC--CCCC----CCcccccCCCCCccccccccCchhhh-----hhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhc
Q 011490 166 HE--SVSS----DSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNA 234 (484)
Q Consensus 166 ~~--~~~~----~~~~~~~Pg~~~~~~l~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 234 (484)
.. .... ......+||++. ++..+++.++. ..+.+........++.++++||+.+||+.+++++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred ccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 10 0100 011124777765 56666666543 1222233333445678999999999999999988877
Q ss_pred cCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEE
Q 011490 235 RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWV 314 (484)
Q Consensus 235 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (484)
++++++.|||+.+....... . .....+..+.++.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~-~-~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDN-S-SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred cCCceEEecCcccccccCCC-c-cccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 77789999999653211000 0 000001112478899999988899999999998888999999999999999999998
Q ss_pred EeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHH
Q 011490 315 IRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNE 394 (484)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na 394 (484)
++... .++.++. ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 310 ~~~~~-----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na 377 (459)
T PLN02448 310 ARGEA-----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNS 377 (459)
T ss_pred EcCch-----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhH
Confidence 86431 1122221 34778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 011490 395 KLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIK 473 (484)
Q Consensus 395 ~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~ 473 (484)
+++++.+|+|+.+.... .+++.+++++|+++|+++|.++ +++++||+||++|++++++++.+||||+.+++
T Consensus 378 ~~v~~~~g~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~ 449 (459)
T PLN02448 378 KLIVEDWKIGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLD 449 (459)
T ss_pred HHHHHHhCceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99974589999886320 0012589999999999999875 67889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 011490 474 LLIKDILQ 481 (484)
Q Consensus 474 ~~~~~~~~ 481 (484)
+|++.+..
T Consensus 450 ~~v~~~~~ 457 (459)
T PLN02448 450 AFIRDISQ 457 (459)
T ss_pred HHHHHHhc
Confidence 99999864
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=4.4e-63 Score=490.24 Aligned_cols=433 Identities=26% Similarity=0.438 Sum_probs=322.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~-rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. ....... ....+++|+.++ ++++++....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCccccc
Confidence 469999999999999999999999996 699999999985411 1111111 111258888875 3565543211
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhc---CCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhc
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEI---QPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 163 (484)
. ......+......+.+.+.+++++. +.+++|||+|.++.|+..+|+++|||++.|++++++.+..+++....
T Consensus 75 ~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 75 T----DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c----ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 1233344445556667777777753 13459999999999999999999999999999999998887765421
Q ss_pred ccCCCCCCCCcccccCCCCCccccccccCchhhh-------hhhhHHHHHHhhh--cccEEEeccccccCHHHHHHHHhc
Q 011490 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEM--ASYGVIVNSFEEMEPAYVEEYKNA 234 (484)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~-------~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~~~ 234 (484)
. .....+||+|. ++.++++.+++ +..++....+... .++++++|||.+||+.+++.+..
T Consensus 151 ~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 151 N--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred C--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 0 12345888876 66777777553 1223333333332 24689999999999999988854
Q ss_pred cCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEE
Q 011490 235 RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWV 314 (484)
Q Consensus 235 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (484)
.+++.|||+.+...............+.++.++.+|||.+++++||||||||+..++.+++.+++.+|+.++.+|||+
T Consensus 219 --~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv 296 (455)
T PLN02152 219 --IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWV 296 (455)
T ss_pred --CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 269999999753210000000000011124579999999988899999999999999999999999999999999999
Q ss_pred EeCCCCC-----CCchhh-hhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecccccc
Q 011490 315 IRPGDQA-----KGLEDW-LLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA 388 (484)
Q Consensus 315 ~~~~~~~-----~~~~~~-~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 388 (484)
++..... .....+ .+|++|.++.. +|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~-~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 297 ITDKLNREAKIEGEEETEIEKIAGFRHELE-EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EecCcccccccccccccccccchhHHHhcc-CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 9853110 000001 03678877654 4556779999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCCh
Q 011490 389 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSS 468 (484)
Q Consensus 389 DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~ 468 (484)
||+.||+++++.+|+|+.+...+ ++.+++++|+++|+++|+|+ +++||+||++|++++++++.+|||+
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~~~ggsS 443 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAGGEGGSS 443 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 99999999975568887775321 12479999999999999743 5579999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011490 469 YLNIKLLIKDI 479 (484)
Q Consensus 469 ~~~~~~~~~~~ 479 (484)
+.++++|++.|
T Consensus 444 ~~nl~~li~~i 454 (455)
T PLN02152 444 DKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.1e-63 Score=499.21 Aligned_cols=447 Identities=26% Similarity=0.422 Sum_probs=325.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCCchhhh---hHHHhhccc-CCCceEEEEeeCCCccCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTIVTTPMNAARF---QNVIERGIQ-SGLRIQVIEFYFPCQEVGLPE 81 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rG--h~V~~~~~~~~~~~v---~~~~~~~~~-~~~~i~~~~i~~~~~~~~~~~ 81 (484)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ...+..... ...+++++.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 57999999999999999999999999998 889999998765422 111111110 122599999875421 11
Q ss_pred CCCccCCCCccchHHHHHHHHHHchHHHHHHHHhc---CCC-CeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHH
Q 011490 82 GCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI---QPK-PSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~ 157 (484)
.. .......+......+.+.+++++.+. ..+ .+|||+|.++.|+..+|+++|||++.|++++++.++++
T Consensus 78 -----~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 -----TE--DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred -----cc--chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 00 10112222222234445555554331 113 38999999999999999999999999999999999888
Q ss_pred HhhhhcccC---C--CCCCCCcccccCCCCCccccccccCchhhh---hhhhHHHHHHhhhcccEEEeccccccCHHHHH
Q 011490 158 HSLSVSKAH---E--SVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEEMEPAYVE 229 (484)
Q Consensus 158 ~~~~~~~~~---~--~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 229 (484)
.+.+..... . .......+..+||++.+ ++..+++..+. +..++....+.+.+++++++||+.+||+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 877543211 1 11111233458888421 56666665432 22333344455677889999999999998888
Q ss_pred HHHhc--cCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhC
Q 011490 230 EYKNA--RDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEAT 307 (484)
Q Consensus 230 ~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 307 (484)
.+.+. ..++++.|||+......... . ....+++|.+||+.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~-----~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDD-----S-KDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccc-----c-ccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 77653 33789999999432111000 0 0012467999999998888999999999989999999999999999
Q ss_pred CCCEEEEEeCCCC---------CCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcC
Q 011490 308 KKPFIWVIRPGDQ---------AKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNG 378 (484)
Q Consensus 308 ~~~~i~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 378 (484)
+++|||+++.... ..+..++ +|++|.++... |+++.+|+||.+||.|+++++|||||||||++||+++|
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTKD-IGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhcc-CceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 9999999975210 1122333 68898877654 55667999999999999999999999999999999999
Q ss_pred CCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHH
Q 011490 379 LPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD-EGEERDERRRRAREYGET 457 (484)
Q Consensus 379 vP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~r~~a~~l~~~ 457 (484)
||||++|+++||+.||+++++++|+|+.++... ..+. ..+..+.+++++|+++|+++|+ |+ .||+||++++++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~-~~~~-~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~~ 454 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW-RGDL-LAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSEK 454 (481)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEeeccc-cccc-cccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHHH
Confidence 999999999999999955337999999996410 0000 0001236899999999999996 43 999999999999
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHh
Q 011490 458 AKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 458 ~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
+++++++|||++.++++|+++|..
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-62 Score=493.31 Aligned_cols=449 Identities=29% Similarity=0.469 Sum_probs=321.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCC---eEEEEeCCCchh-hhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGA---LVTIVTTPMNAA-RFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh---~V~~~~~~~~~~-~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
+.||+|+|+|++||++|++.||+.|+.+|. .||+++++.+.. .....+........+++|+.+|++.. +...
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~~~ 78 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PPPM 78 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cccc
Confidence 679999999999999999999999999984 567766543221 11122211111112599999886431 1111
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhc-------CC-CCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHH
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI-------QP-KPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLL 155 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~ 155 (484)
.... . .....+......+.+.+++.++++ +. +++|||+|.++.|+..+|+++|||++.|++++++.++
T Consensus 79 ~~~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 79 ELFV--K--ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred cccc--c--chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 1000 0 111122233333444444444332 01 4599999999999999999999999999999998888
Q ss_pred HHHhhhhcc-cCC-CC--CCCCcccccCCCCCccccccccCchhhh---hhhhHHHHHHhhhcccEEEeccccccCHHHH
Q 011490 156 CLHSLSVSK-AHE-SV--SSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEEMEPAYV 228 (484)
Q Consensus 156 ~~~~~~~~~-~~~-~~--~~~~~~~~~Pg~~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 228 (484)
.+++.+... ... .. ....++..+||+++. ++..+++..++ ....+....+...+++++++|||.+||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 877654321 111 10 011133458888432 55666665332 1122233334556788999999999999999
Q ss_pred HHHHhcc--CCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHh
Q 011490 229 EEYKNAR--DGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEA 306 (484)
Q Consensus 229 ~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~ 306 (484)
+++.... .+++++|||++....... ...+..++.+|.+||+.++++++|||||||+...+.+++.+++.+|+.
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 8886531 268999999976421100 000011235799999999888999999999998999999999999999
Q ss_pred CCCCEEEEEeCCCCC-CCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccc
Q 011490 307 TKKPFIWVIRPGDQA-KGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 307 ~~~~~i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 385 (484)
++++|||+++..... .....+ +|++|.++....+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred CCCcEEEEEecCcccccchhhh-CChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 999999999853211 111223 8889988877665 5569999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhC
Q 011490 386 FFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEG 465 (484)
Q Consensus 386 ~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~g 465 (484)
+++||+.||+++++++|+|+.+.... ..+ +++.+++++|+++|+++|+++ ++||+||+++++.+++++.+|
T Consensus 386 ~~~DQ~~na~~~~~~~g~g~~~~~~~----~~~--~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 386 MYAEQQLNAFTMVKELGLAVELRLDY----VSA--YGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred ccccchhhHHHHHHHhCeeEEeeccc----ccc--cCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCC
Confidence 99999999987437999999986430 000 012579999999999999754 389999999999999999999
Q ss_pred CChHHHHHHHHHHHHhh
Q 011490 466 GSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 466 g~~~~~~~~~~~~~~~~ 482 (484)
||++.++++|++.|.+.
T Consensus 457 GsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 457 GSSFVAVKRFIDDLLGD 473 (475)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999999764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.3e-47 Score=385.88 Aligned_cols=385 Identities=17% Similarity=0.182 Sum_probs=266.7
Q ss_pred CcEEEEE-cCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCcc--CCCCCCCC
Q 011490 8 QLHFILF-PFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQE--VGLPEGCE 84 (484)
Q Consensus 8 ~~kil~~-~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~--~~~~~~~~ 84 (484)
..||+.+ |.++.+|+.-+-.|+++|++|||+||++++..... .... ...+++.+.++..... +.... ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~-~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKS-SA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhh-hh
Confidence 3468766 77899999999999999999999999997753110 0000 0124555544321110 00000 00
Q ss_pred cc---CCC-CccchHHHH----HHHHH--HchHHHHHHHH--hcCCCCeEEEecCCCcchHHHHHHc-CCCcEEEecchH
Q 011490 85 SW---DKL-PSMALLPKF----FAAIE--MLRLPLETLFK--EIQPKPSCLISDVCLPWTVSSACKF-NVPRIVFHGFSC 151 (484)
Q Consensus 85 ~~---~~~-~~~~~~~~~----~~~~~--~~~~~l~~~l~--~~~~~~D~vI~D~~~~~a~~~A~~l-gIP~v~~~~~~~ 151 (484)
.. ... ......... ....+ ...+.+.++++ + .++|+||+|.+..|+..+|+++ ++|.|.+++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 000 000000001 11111 12345567776 5 7899999999888999999999 999888877554
Q ss_pred HHHHHHHhhhhcccCCCCC-CCCcccccCCCC----CccccccccCchhhh------hhh-------hHHH--------H
Q 011490 152 FCLLCLHSLSVSKAHESVS-SDSEYFLVPGLP----DRVEITKAQLPEILK------LKS-------FGEP--------I 205 (484)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Pg~~----~~~~l~~~~l~~~~~------~~~-------~~~~--------~ 205 (484)
...... .++ .+..+.++|.+. ..|++..|..+.+.. +.. ..+. .
T Consensus 170 ~~~~~~----------~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 170 LAENFE----------TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred chhHHH----------hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 432211 112 345566777443 344444332222111 000 1111 1
Q ss_pred HHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEe
Q 011490 206 LAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVC 285 (484)
Q Consensus 206 ~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs 285 (484)
.+...+...+++|+...++ +++++++++++|||+..+.... ...++++.+|++.++ +++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d------~~rp~~p~v~~vGgi~~~~~~~----------~~l~~~l~~fl~~~~-~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFD------NNRPVPPSVQYLGGLHLHKKPP----------QPLDDYLEEFLNNST-NGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCcccc------CCCCCCCCeeeecccccCCCCC----------CCCCHHHHHHHhcCC-CcEEEEE
Confidence 2233445677899988887 3467889999999997642111 012678999998775 4699999
Q ss_pred cCCCcc---CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCcccc
Q 011490 286 LGSLCD---SSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGF 362 (484)
Q Consensus 286 ~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~ 362 (484)
|||+.. .+.+++..+++|+++.+.+|||+.++... + ...++|+.+.+|+||.+||+|+.+++|
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~---------~-----~~~p~Nv~i~~w~Pq~~lL~hp~v~~f 368 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE---------A-----INLPANVLTQKWFPQRAVLKHKNVKAF 368 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC---------c-----ccCCCceEEecCCCHHHHhcCCCCCEE
Confidence 999864 46788999999999999999999986431 1 012679999999999999999999999
Q ss_pred ccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCCh
Q 011490 363 LTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGE 442 (484)
Q Consensus 363 I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 442 (484)
|||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++.. .+++++|.++|+++++|+
T Consensus 369 ItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~- 433 (507)
T PHA03392 369 VTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP- 433 (507)
T ss_pred EecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH-
Confidence 99999999999999999999999999999999999 599999999987 699999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 011490 443 ERDERRRRAREYGETAKTA 461 (484)
Q Consensus 443 ~~~~~r~~a~~l~~~~~~~ 461 (484)
+||+||+++++.+++.
T Consensus 434 ---~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 434 ---KYRKNLKELRHLIRHQ 449 (507)
T ss_pred ---HHHHHHHHHHHHHHhC
Confidence 9999999999999854
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.6e-48 Score=398.75 Aligned_cols=382 Identities=23% Similarity=0.292 Sum_probs=224.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc--C
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW--D 87 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~--~ 87 (484)
||+++|. ++||+.++..|+++|++|||+||++++... ..+... ....+++..++.+............. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-cccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888884 889999999999999999999999986421 111111 01245565554332211111111100 0
Q ss_pred CCCcc---chHHHHHHHH-------H-Hc-----hHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchH
Q 011490 88 KLPSM---ALLPKFFAAI-------E-ML-----RLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (484)
Q Consensus 88 ~~~~~---~~~~~~~~~~-------~-~~-----~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~ 151 (484)
..... .......... . .+ ...+.+.+++ .++|++|+|.+..|+..+|++++||.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 00000 0011111111 0 01 0122233455 6899999999888999999999999986432211
Q ss_pred HHHHHHHhhhhcccCCCCCCCCcccccCCC----CCccccccccCchhhh-hhhhHHH-------------------HHH
Q 011490 152 FCLLCLHSLSVSKAHESVSSDSEYFLVPGL----PDRVEITKAQLPEILK-LKSFGEP-------------------ILA 207 (484)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~----~~~~~l~~~~l~~~~~-~~~~~~~-------------------~~~ 207 (484)
... ......+.+..+.++|.. +..|++..|..+.+.. ...+... ..+
T Consensus 152 ~~~---------~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (500)
T PF00201_consen 152 MYD---------LSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRE 222 (500)
T ss_dssp CSC---------CTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHH
T ss_pred cch---------hhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHH
Confidence 110 000111223445555533 3344544443332221 0111000 011
Q ss_pred hhhcccEEEeccccccCHHHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecC
Q 011490 208 AEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLG 287 (484)
Q Consensus 208 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~G 287 (484)
.+.+...+++|+...++ ++ ..++|++++||++.....++ .++++.+|++...++++||||||
T Consensus 223 ~~~~~~l~l~ns~~~ld-----~p-rp~~p~v~~vGgl~~~~~~~------------l~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 223 LLSNASLVLINSHPSLD-----FP-RPLLPNVVEVGGLHIKPAKP------------LPEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp HHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----T------------CHHHHHHHTSTTTTTEEEEEE-T
T ss_pred HHHHHHHHhhhccccCc-----CC-cchhhcccccCccccccccc------------cccccchhhhccCCCCEEEEecC
Confidence 11222334455555544 23 33458999999987654433 25778899988556779999999
Q ss_pred CCccCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCcccccccc
Q 011490 288 SLCDSST-RQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHC 366 (484)
Q Consensus 288 S~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~Hg 366 (484)
|+....+ +.++.+++++++++.+|||+..+.. +..+ ++|+.+.+|+||.+||.|+++++|||||
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~----------~~~l-----~~n~~~~~W~PQ~~lL~hp~v~~fitHg 349 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP----------PENL-----PKNVLIVKWLPQNDLLAHPRVKLFITHG 349 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH----------GCHH-----HTTEEEESS--HHHHHTSTTEEEEEES-
T ss_pred cccchhHHHHHHHHHHHHhhCCCcccccccccc----------cccc-----cceEEEeccccchhhhhcccceeeeecc
Confidence 9976444 4478899999999999999997732 1111 4699999999999999999999999999
Q ss_pred chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHH
Q 011490 367 GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDE 446 (484)
Q Consensus 367 G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 446 (484)
|+||++||+++|||||++|+++||+.||+++ ++.|+|+.++.. .+|+++|.++|+++|+|+ +
T Consensus 350 G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~----~ 411 (500)
T PF00201_consen 350 GLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP----S 411 (500)
T ss_dssp -HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH----H
T ss_pred ccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh----H
Confidence 9999999999999999999999999999999 699999999988 699999999999999998 9
Q ss_pred HHHHHHHHHHHHHHH
Q 011490 447 RRRRAREYGETAKTA 461 (484)
Q Consensus 447 ~r~~a~~l~~~~~~~ 461 (484)
|++||+++++.+++.
T Consensus 412 y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 412 YKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998854
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.9e-44 Score=356.68 Aligned_cols=367 Identities=21% Similarity=0.229 Sum_probs=246.4
Q ss_pred EcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccc
Q 011490 14 FPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMA 93 (484)
Q Consensus 14 ~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (484)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+++. +++|..++.........+. ........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcchHH
Confidence 46899999999999999999999999999999888777776 6888877643211001110 00001111
Q ss_pred hHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCCCCCCCC
Q 011490 94 LLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSDS 173 (484)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (484)
....+..........+.+++++ ++||+||+|.+++++..+|+++|||+|.+++.+.... .++. ..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~---------~~ 133 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEE---------MV 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccc---------cc
Confidence 2222222222333445556666 8999999999888999999999999998854321110 0000 00
Q ss_pred cccccCCCCCccccccccCchhhh-hhhhHHHHH-------Hhh-hcccEEEeccccccCHHHHHHHHhccCCceEEeCc
Q 011490 174 EYFLVPGLPDRVEITKAQLPEILK-LKSFGEPIL-------AAE-MASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGP 244 (484)
Q Consensus 174 ~~~~~Pg~~~~~~l~~~~l~~~~~-~~~~~~~~~-------~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 244 (484)
+...+.+........+....... ...+...+. ... ......+. ..++++++.+..++++++++||
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~-----~~~~~l~~~~~~~~~~~~~~Gp 207 (392)
T TIGR01426 134 -SPAGEGSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLV-----YTPKAFQPAGETFDDSFTFVGP 207 (392)
T ss_pred -cccchhhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEE-----eCChHhCCCccccCCCeEEECC
Confidence 00000000000000000000000 111111100 000 00000111 2234444445677889999999
Q ss_pred ccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCc
Q 011490 245 VSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGL 324 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (484)
+..... +...|+....++++||||+||+.......+..+++++.+.+.+++|.++++.....+
T Consensus 208 ~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~ 270 (392)
T TIGR01426 208 CIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADL 270 (392)
T ss_pred CCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHh
Confidence 865321 122466666667899999999877667788889999999999999998765321111
Q ss_pred hhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcce
Q 011490 325 EDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIG 404 (484)
Q Consensus 325 ~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g 404 (484)
.. .++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||.++ +++|+|
T Consensus 271 ~~-----------~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~g 336 (392)
T TIGR01426 271 GE-----------LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGLG 336 (392)
T ss_pred cc-----------CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCCE
Confidence 11 2579999999999999999998 999999999999999999999999999999999999 599999
Q ss_pred eEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011490 405 VTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 461 (484)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~ 461 (484)
+.+... .+++++|.++|+++++|+ +|+++++++++.++..
T Consensus 337 ~~l~~~-------------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 337 RHLPPE-------------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA 376 (392)
T ss_pred EEeccc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc
Confidence 999876 689999999999999988 8999999999999854
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.4e-43 Score=352.25 Aligned_cols=371 Identities=16% Similarity=0.122 Sum_probs=238.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc-C
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW-D 87 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~ 87 (484)
+||+|+++|+.||++|+++||++|++|||+|+|++++.+...++.. |++|..++............... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999776666654 68888775422110000000000 0
Q ss_pred CCCc---cchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 88 KLPS---MALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
.... ......+..........+.+.+++ ++||+||+|.+..++..+|+++|||++.+++++.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc---------
Confidence 0000 011111122223333444445555 89999999998888999999999999998776532211
Q ss_pred cCCCCCCCCcccccCCCCCccccccccCchhhh---hhhhHHHHHHhhhcccEEE------ecccccc--CHHHHHHHHh
Q 011490 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVI------VNSFEEM--EPAYVEEYKN 233 (484)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~------~~s~~~l--~~~~~~~~~~ 233 (484)
...|-+ . ........... +........+..++..++- ......+ -.+.+...+.
T Consensus 141 -----------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 141 -----------AFPPPL-G---RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred -----------cCCCcc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 000000 0 00000000000 1111111111111111110 0000000 0111122334
Q ss_pred ccCCceEEeC-cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCH-HHHHHHHHHHHhCCCCE
Q 011490 234 ARDGKVWCVG-PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSST-RQLIELGLGLEATKKPF 311 (484)
Q Consensus 234 ~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~ 311 (484)
+++++..++| ++...+.. ...+.++..|++.. +++|||++||+..... ..+..++++++..+.++
T Consensus 206 ~~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPYN-----------GPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred CccccCcEeCCCCCCCCCC-----------CCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 4556666665 33221111 01245667787653 5689999999987554 56677999999999999
Q ss_pred EEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchh
Q 011490 312 IWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 391 (484)
Q Consensus 312 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 391 (484)
||+++...... ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+
T Consensus 273 i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 273 ILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred EEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 99998754211 012569999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011490 392 CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 461 (484)
Q Consensus 392 ~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~ 461 (484)
.||+++ +++|+|+.++.. .+++++|.++|++++++ .++++++++++.+++.
T Consensus 338 ~~a~~~-~~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~ 388 (401)
T cd03784 338 FWAARV-AELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIREE 388 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc
Confidence 999999 699999999877 58999999999999984 5566677777776533
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-41 Score=330.11 Aligned_cols=387 Identities=18% Similarity=0.224 Sum_probs=245.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++||+++..|++||++|+++||++|.++||+|+|++++.+.+.++++ ++.|...+..... ... ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~---~~~--~~~ 66 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSE---LAT--EDG 66 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCCh---hhh--hhh
Confidence 46899999999999999999999999999999999999888888887 5566555422000 000 000
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
.......+.............+.+++.+ ..+|+++.|...... .+++..++|++............... ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 138 (406)
T COG1819 67 KFAGVKSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLP 138 (406)
T ss_pred hhhccchhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Ccc
Confidence 0111111111223333445555666777 799999999875444 89999999998743332221110000 000
Q ss_pred CCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccE--E-------EeccccccCHHHHHH--HH-hcc
Q 011490 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYG--V-------IVNSFEEMEPAYVEE--YK-NAR 235 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~-------~~~s~~~l~~~~~~~--~~-~~~ 235 (484)
.... ......+..+ ++.....+.. ...+.... ...+.... . +..+-..++..+.+. .+ ..+
T Consensus 139 ~~~~-~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (406)
T COG1819 139 PVGI-AGKLPIPLYP----LPPRLVRPLI-FARSWLPK-LVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRL 211 (406)
T ss_pred cccc-cccccccccc----cChhhccccc-cchhhhhh-hhhhhhccccccccchHHHhcCCCCccccccccccCCCCCC
Confidence 0000 0000011110 0000000000 00000000 00000000 0 001111111111100 00 122
Q ss_pred CCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEE
Q 011490 236 DGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVI 315 (484)
Q Consensus 236 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (484)
|....++||+.... ..+...|. ..++++||+|+||.... .+.++.+++++..++.++|+.+
T Consensus 212 p~~~~~~~~~~~~~----------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~ 272 (406)
T COG1819 212 PFIGPYIGPLLGEA----------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSL 272 (406)
T ss_pred CCCcCccccccccc----------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEec
Confidence 23334445443321 22333342 23456999999999977 8888999999999999999999
Q ss_pred eCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHH
Q 011490 316 RPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEK 395 (484)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 395 (484)
+... . +... .+.|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||++||.
T Consensus 273 ~~~~-~-~~~~-----------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~ 337 (406)
T COG1819 273 GGAR-D-TLVN-----------VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAE 337 (406)
T ss_pred cccc-c-cccc-----------CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHH
Confidence 7621 1 1111 3679999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 011490 396 LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLL 475 (484)
Q Consensus 396 ~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~ 475 (484)
|+ |++|+|+.+..+ .++++.|+++|+++|+|+ .|+++++++++.+++. +| ...+.++
T Consensus 338 rv-e~~G~G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g--~~~~a~~ 394 (406)
T COG1819 338 RV-EELGAGIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG--PAKAADL 394 (406)
T ss_pred HH-HHcCCceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc--HHHHHHH
Confidence 99 699999999988 699999999999999998 9999999999999976 66 4556666
Q ss_pred HHHHH
Q 011490 476 IKDIL 480 (484)
Q Consensus 476 ~~~~~ 480 (484)
++...
T Consensus 395 le~~~ 399 (406)
T COG1819 395 LEEFA 399 (406)
T ss_pred HHHHH
Confidence 66543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.5e-40 Score=340.63 Aligned_cols=393 Identities=30% Similarity=0.422 Sum_probs=247.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEE---EEeeCCCccCCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQV---IEFYFPCQEVGLPEGCE 84 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~---~~i~~~~~~~~~~~~~~ 84 (484)
+.+++++++|++||++|++.||+.|+++||+||++++............ ...+.. ...+.....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSK-----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCccc-----ceeeeeeecChHHhhhhhhhhccchH
Confidence 4688999999999999999999999999999999998754432221000 001111 11111000011222111
Q ss_pred ccCCCCccchHHHHHHHHHHchHHHHH----HHHhcCCCCeEEEecCCCcchHHHHHHcC-CCcEEEecchHHHHHHHHh
Q 011490 85 SWDKLPSMALLPKFFAAIEMLRLPLET----LFKEIQPKPSCLISDVCLPWTVSSACKFN-VPRIVFHGFSCFCLLCLHS 159 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~D~vI~D~~~~~a~~~A~~lg-IP~v~~~~~~~~~~~~~~~ 159 (484)
... .............+...+.+ +......++|++|+|.+..+...++.... |+..++.+.++.......+
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 80 DDD----LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 100 00011111111222222222 22221234999999998767777776665 8988888877776654433
Q ss_pred hhhcccCCCCCCCCcccccCCCCC-----ccccccccCchhhh-hhhhHH---------HHH-Hhh-------hcccEEE
Q 011490 160 LSVSKAHESVSSDSEYFLVPGLPD-----RVEITKAQLPEILK-LKSFGE---------PIL-AAE-------MASYGVI 216 (484)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~Pg~~~-----~~~l~~~~l~~~~~-~~~~~~---------~~~-~~~-------~~~~~~~ 216 (484)
.+. .++|.... .+.+..+....... ...+.. ... ... .....++
T Consensus 156 ~~~-------------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 156 SPL-------------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred Ccc-------------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 222 12332221 11111111100000 000000 000 000 0111233
Q ss_pred ecc-ccccCHHHHHHH-HhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCC--cEEEEecCCCc--
Q 011490 217 VNS-FEEMEPAYVEEY-KNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPG--SAVYVCLGSLC-- 290 (484)
Q Consensus 217 ~~s-~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~V~vs~GS~~-- 290 (484)
.++ +..+++...... +....+++++|||+........ ...+.+|++..+.. ++|||||||+.
T Consensus 223 ~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~ 290 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNS 290 (496)
T ss_pred hcCeEEEEccCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCccccc
Confidence 333 555554443333 3335689999999987632211 11466777776654 79999999998
Q ss_pred -cCCHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhh-cCCCCccccccccc
Q 011490 291 -DSSTRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVI-LSHPAIGGFLTHCG 367 (484)
Q Consensus 291 -~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~l-l~~~~~~~~I~HgG 367 (484)
.++.++..+++.+++.. +++|+|+........ +++++..+ ...|+...+|+||.++ |+|+++++||||||
T Consensus 291 ~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG 363 (496)
T KOG1192|consen 291 ADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGG 363 (496)
T ss_pred ccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCc
Confidence 68899999999999999 889999998753211 12222111 2458888899999998 69999999999999
Q ss_pred hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHH
Q 011490 368 WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDER 447 (484)
Q Consensus 368 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~ 447 (484)
||||+|++++|||||++|+++||+.||++++ +.|.|..++.. ..+.+.+.+++..+++++ +|
T Consensus 364 ~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y 425 (496)
T KOG1192|consen 364 WNSTLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EY 425 (496)
T ss_pred ccHHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HH
Confidence 9999999999999999999999999999995 88877777766 466666999999999988 99
Q ss_pred HHHHHHHHHHHH
Q 011490 448 RRRAREYGETAK 459 (484)
Q Consensus 448 r~~a~~l~~~~~ 459 (484)
+++++++++..+
T Consensus 426 ~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 426 KEAAKRLSEILR 437 (496)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=7.6e-28 Score=234.42 Aligned_cols=322 Identities=16% Similarity=0.152 Sum_probs=206.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (484)
||+|.+.++-||++|.++||++|.++||+|+|++.....+ .. .....++.+..++.. ++... .
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e---~~----l~~~~g~~~~~~~~~----~l~~~----~-- 65 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE---KT----IIEKENIPYYSISSG----KLRRY----F-- 65 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc---cc----cCcccCCcEEEEecc----CcCCC----c--
Confidence 6999999999999999999999999999999998764322 11 111225777766521 11110 0
Q ss_pred CccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC--cchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCL--PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
....+...+... ...-....++++ .+||+||+...+ ..+..+|..+++|++.
T Consensus 66 -~~~~~~~~~~~~-~~~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i---------------------- 119 (352)
T PRK12446 66 -DLKNIKDPFLVM-KGVMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLL---------------------- 119 (352)
T ss_pred -hHHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEE----------------------
Confidence 001111111111 122233456778 899999998854 3577899999999998
Q ss_pred CCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccC-CceEEeCccc
Q 011490 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARD-GKVWCVGPVS 246 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~ 246 (484)
.+...+||+.. +...+....+.-+|++. ...++ .++.++|+.+
T Consensus 120 -----~e~n~~~g~~n-----------------------r~~~~~a~~v~~~f~~~--------~~~~~~~k~~~tG~Pv 163 (352)
T PRK12446 120 -----HESDMTPGLAN-----------------------KIALRFASKIFVTFEEA--------AKHLPKEKVIYTGSPV 163 (352)
T ss_pred -----ECCCCCccHHH-----------------------HHHHHhhCEEEEEccch--------hhhCCCCCeEEECCcC
Confidence 33444555542 11122222233344321 11222 4678899654
Q ss_pred CCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCCch
Q 011490 247 LCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSST-RQLIELGLGLEATKKPFIWVIRPGDQAKGLE 325 (484)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (484)
....... ..+...+.+.-.+++++|+|+.||.+.... +.+.+++..+.. +.+++|++|.+.
T Consensus 164 r~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~------ 225 (352)
T PRK12446 164 REEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN------ 225 (352)
T ss_pred Ccccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch------
Confidence 3321100 011111223333456799999999987543 334444544432 488999998763
Q ss_pred hhhhhhHHHHHhcCCCeEeeCcC-C-hhhhcCCCCccccccccchhhHHHHHHcCCCEeccccc-----cchhhHHHHHH
Q 011490 326 DWLLAEKFEERIEGRGLLIRGWA-P-QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF-----ADQFCNEKLVV 398 (484)
Q Consensus 326 ~~~l~~~~~~~~~~~nv~~~~~~-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~~~ 398 (484)
+.+.. .. ..++.+.+|+ + -.++|..+++ +|||||.+|++|++++|+|+|++|+. .||..||..+
T Consensus 226 ---~~~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l- 296 (352)
T PRK12446 226 ---LDDSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF- 296 (352)
T ss_pred ---HHHHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-
Confidence 21111 11 1355667887 4 4569999999 99999999999999999999999984 4899999999
Q ss_pred HHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011490 399 QVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 399 e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~ 453 (484)
++.|+|..+... .++++.|.+++.++++|++ .+++++++
T Consensus 297 ~~~g~~~~l~~~-------------~~~~~~l~~~l~~ll~~~~---~~~~~~~~ 335 (352)
T PRK12446 297 ERQGYASVLYEE-------------DVTVNSLIKHVEELSHNNE---KYKTALKK 335 (352)
T ss_pred HHCCCEEEcchh-------------cCCHHHHHHHHHHHHcCHH---HHHHHHHH
Confidence 599999999876 6999999999999998752 34444433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4e-25 Score=212.53 Aligned_cols=326 Identities=19% Similarity=0.204 Sum_probs=211.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGA-LVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh-~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
++|++...++-||+.|.++|+++|.++|+ +|.+..+....+... ....++.++.++.. ++...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l-------~~~~~~~~~~I~~~----~~~~~----- 64 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL-------VKQYGIEFELIPSG----GLRRK----- 64 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee-------ccccCceEEEEecc----ccccc-----
Confidence 47899999999999999999999999999 577776553322111 11225777776532 11111
Q ss_pred CCCccchHHHHHHHH--HHchHHHHHHHHhcCCCCeEEEecCCC--cchHHHHHHcCCCcEEEecchHHHHHHHHhhhhc
Q 011490 88 KLPSMALLPKFFAAI--EMLRLPLETLFKEIQPKPSCLISDVCL--PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 163 (484)
..+..+...+ .......++++++ .+||+||+.+-+ ..+..+|..+|||.+.
T Consensus 65 -----~~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i------------------ 119 (357)
T COG0707 65 -----GSLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII------------------ 119 (357)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE------------------
Confidence 1111111111 1223455778888 899999997743 5677899999999998
Q ss_pred ccCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC
Q 011490 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 243 (484)
++.+.+||... ....+....+..++...+. +. -+.+++.+|
T Consensus 120 ---------hEqn~~~G~an-----------------------k~~~~~a~~V~~~f~~~~~----~~---~~~~~~~tG 160 (357)
T COG0707 120 ---------HEQNAVPGLAN-----------------------KILSKFAKKVASAFPKLEA----GV---KPENVVVTG 160 (357)
T ss_pred ---------EecCCCcchhH-----------------------HHhHHhhceeeeccccccc----cC---CCCceEEec
Confidence 67778888863 1112222223444442110 00 013577788
Q ss_pred -cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCC
Q 011490 244 -PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSST-RQLIELGLGLEATKKPFIWVIRPGDQA 321 (484)
Q Consensus 244 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (484)
|....-.. . +..-.... ...++++|+|+.||++...- +.+..++..+.+ +.++++.+|.+..
T Consensus 161 ~Pvr~~~~~-~------------~~~~~~~~-~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~- 224 (357)
T COG0707 161 IPVRPEFEE-L------------PAAEVRKD-GRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL- 224 (357)
T ss_pred CcccHHhhc-c------------chhhhhhh-ccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH-
Confidence 43221110 0 01111111 11146699999999987442 223334444433 5788888887641
Q ss_pred CCchhhhhhhHHHHHhcCCC-eEeeCcCCh-hhhcCCCCccccccccchhhHHHHHHcCCCEeccccc----cchhhHHH
Q 011490 322 KGLEDWLLAEKFEERIEGRG-LLIRGWAPQ-VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF----ADQFCNEK 395 (484)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~n-v~~~~~~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~ 395 (484)
+.........| +.+.+|.++ ..++..+++ +||++|.+|+.|++++|+|+|.+|+. .||..||.
T Consensus 225 ---------~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 225 ---------EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred ---------HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 12223333334 888899876 559999999 99999999999999999999999983 38999999
Q ss_pred HHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 396 LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 396 ~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
.+ |+.|.|..++.. .+|.+.|.+.|.+++++++..+.|++++++++
T Consensus 294 ~l-~~~gaa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 294 FL-EKAGAALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HH-HhCCCEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99 699999999988 69999999999999998755555555554443
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.5e-24 Score=210.51 Aligned_cols=306 Identities=18% Similarity=0.199 Sum_probs=190.6
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 9 LHFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 9 ~kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
|||++...+ +.||+..+++||++| |||+|+|++.....+.+.+. +.+..++.... .... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~~---~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLGP----IQEN---G 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCceE----eccC---C
Confidence 589999888 999999999999999 69999999987544333222 33433321100 0000 0
Q ss_pred CCCccchHHHHH---HHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 88 KLPSMALLPKFF---AAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
............ .........+.+++++ .+||+||+|.. +.+..+|+..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 011111111111 1223444556667777 89999999975 4467889999999999866653321
Q ss_pred cCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHh--hhcccEEEeccccccCHHHHHHHHhccCCceEEe
Q 011490 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAA--EMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCV 242 (484)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 242 (484)
|... +... .. +..+...+... ...+...+.-++. . +.....++.++
T Consensus 129 --------------~~~~----~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-~--------~~~~~~~~~~~ 176 (318)
T PF13528_consen 129 --------------PNFW----LPWD--QD---FGRLIERYIDRYHFPPADRRLALSFY-P--------PLPPFFRVPFV 176 (318)
T ss_pred --------------ccCC----cchh--hh---HHHHHHHhhhhccCCcccceecCCcc-c--------ccccccccccc
Confidence 0000 0000 00 11111111111 1222222222222 0 01111345567
Q ss_pred CcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCC-CCEEEEEeCCCCC
Q 011490 243 GPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATK-KPFIWVIRPGDQA 321 (484)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~ 321 (484)
||+...... +... .+++.|+|++|..... .++++++..+ +++++. +....
T Consensus 177 ~p~~~~~~~-------------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~- 227 (318)
T PF13528_consen 177 GPIIRPEIR-------------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA- 227 (318)
T ss_pred Cchhccccc-------------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc-
Confidence 776543211 1111 1334788999876543 5667777765 666666 54421
Q ss_pred CCchhhhhhhHHHHHhcCCCeEeeCcC--ChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc--ccchhhHHHHH
Q 011490 322 KGLEDWLLAEKFEERIEGRGLLIRGWA--PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF--FADQFCNEKLV 397 (484)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~nv~~~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~~ 397 (484)
....+|+.+..|. ...++|..+++ +|+|||+||++|++++|+|+|++|. ..+|..||+++
T Consensus 228 --------------~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l 291 (318)
T PF13528_consen 228 --------------DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL 291 (318)
T ss_pred --------------cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH
Confidence 1136799998886 35679999999 9999999999999999999999999 67999999999
Q ss_pred HHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHH
Q 011490 398 VQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINML 437 (484)
Q Consensus 398 ~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 437 (484)
+++|+|+.++.. +++++.|+++|+++
T Consensus 292 -~~~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 292 -EELGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred -HHCCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 699999999887 79999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=2e-21 Score=188.08 Aligned_cols=304 Identities=15% Similarity=0.095 Sum_probs=171.8
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceE-EEEeeCCCccCCCCCCCCccC
Q 011490 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQ-VIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 10 kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~~ 87 (484)
||++...+ +.||+.|.++||++|++ ||+|+|+++......+... ++. +..+|..... ...+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~--~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLK--GEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEe--ecCC-----
Confidence 57787777 55999999999999999 9999999877533333332 222 2222210000 0011
Q ss_pred CCCccchHHHHH---HHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 88 KLPSMALLPKFF---AAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
. .+....+. ...........+++++ .+||+||+|.- +.+..+|+.+|||++.+..+....
T Consensus 64 ~---~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d~~-~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 64 K---VNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISDFE-YSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred c---CcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEECCc-hHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 0 11122221 1101223344567888 89999999965 456889999999999876532110
Q ss_pred cCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhh-hcccEEEeccccccCHHHHHHHHhccCCceE-Ee
Q 011490 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAE-MASYGVIVNSFEEMEPAYVEEYKNARDGKVW-CV 242 (484)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~-~v 242 (484)
.|+... . ...+.+.....+ ..+.......+.... ...++.+. .-
T Consensus 127 -------------~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~p~~~~~~~ 172 (321)
T TIGR00661 127 -------------YPLKTD-------L------IVYPTMAALRIFNERCERFIVPDYPFPY--------TICPKIIKNME 172 (321)
T ss_pred -------------CCcccc-------h------hHHHHHHHHHHhccccceEeeecCCCCC--------CCCccccccCC
Confidence 011100 0 000011111111 111122112211111 00000000 00
Q ss_pred CcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCC
Q 011490 243 GPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAK 322 (484)
Q Consensus 243 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (484)
+|.. ..+..++... .++.|+|.+|+... ..+++++++.+. +.+.++....
T Consensus 173 ~~~~-------------------~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~-- 222 (321)
T TIGR00661 173 GPLI-------------------RYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV-- 222 (321)
T ss_pred Cccc-------------------chhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC--
Confidence 1110 1112223222 23467777787442 345677766553 2233222211
Q ss_pred CchhhhhhhHHHHHhcCCCeEeeCcCC--hhhhcCCCCccccccccchhhHHHHHHcCCCEecccccc--chhhHHHHHH
Q 011490 323 GLEDWLLAEKFEERIEGRGLLIRGWAP--QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA--DQFCNEKLVV 398 (484)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~nv~~~~~~p--q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~ 398 (484)
..+. -++|+.+.+|.| ...+|+.+++ +|||||++|++|++++|+|+|++|... ||..||+.+
T Consensus 223 ------~~~~-----~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l- 288 (321)
T TIGR00661 223 ------AKNS-----YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL- 288 (321)
T ss_pred ------Cccc-----cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-
Confidence 1110 146899889997 4567888888 999999999999999999999999965 899999999
Q ss_pred HHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 399 QVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 399 e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
++.|+|+.++.. ++ ++.+++.++++|+
T Consensus 289 ~~~g~~~~l~~~-------------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 289 EDLGCGIALEYK-------------EL---RLLEAILDIRNMK 315 (321)
T ss_pred HHCCCEEEcChh-------------hH---HHHHHHHhccccc
Confidence 599999999876 34 6777777788776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=3.1e-19 Score=176.04 Aligned_cols=324 Identities=17% Similarity=0.135 Sum_probs=193.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
+||+|+..+..||...++.|+++|.++||+|++++.+.... ....+ ..+++++.++.+ +....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~~------ 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLVP-----KAGIEFHFIPSG----GLRRK------ 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhccc-----cCCCcEEEEecc----CcCCC------
Confidence 47999999889999999999999999999999998764211 01100 125666665421 11100
Q ss_pred CCccchHHHHHHH--HHHchHHHHHHHHhcCCCCeEEEecCC--CcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 89 LPSMALLPKFFAA--IEMLRLPLETLFKEIQPKPSCLISDVC--LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 89 ~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
.....+... .......+.+++++ .+||+|++... ...+..+++..++|++.....
T Consensus 65 ----~~~~~l~~~~~~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~--------------- 123 (357)
T PRK00726 65 ----GSLANLKAPFKLLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN--------------- 123 (357)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC---------------
Confidence 111111111 12334456777888 89999999973 334556788889999863110
Q ss_pred cCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeCc
Q 011490 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGP 244 (484)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 244 (484)
..|+. ..++ ....++.++..+... +. ..-+.++.++|+
T Consensus 124 ------------~~~~~--------------------~~r~--~~~~~d~ii~~~~~~-----~~---~~~~~~i~vi~n 161 (357)
T PRK00726 124 ------------AVPGL--------------------ANKL--LARFAKKVATAFPGA-----FP---EFFKPKAVVTGN 161 (357)
T ss_pred ------------CCccH--------------------HHHH--HHHHhchheECchhh-----hh---ccCCCCEEEECC
Confidence 00000 0000 011222323222111 10 122367888886
Q ss_pred ccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHH-HHHHHHhCCC--CEEEEEeCCCCC
Q 011490 245 VSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIE-LGLGLEATKK--PFIWVIRPGDQA 321 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~ 321 (484)
.+...... +....+-+...++.++|++..|+... ..+.. +.+++++... .+++.+|.+..
T Consensus 162 ~v~~~~~~-------------~~~~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~~- 224 (357)
T PRK00726 162 PVREEILA-------------LAAPPARLAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGDL- 224 (357)
T ss_pred CCChHhhc-------------ccchhhhccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCcH-
Confidence 54332100 00000111212234467776666432 22222 3366654433 45566666531
Q ss_pred CCchhhhhhhHHHHHhc-CCCeEeeCcCC-hhhhcCCCCccccccccchhhHHHHHHcCCCEecccc----ccchhhHHH
Q 011490 322 KGLEDWLLAEKFEERIE-GRGLLIRGWAP-QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEK 395 (484)
Q Consensus 322 ~~~~~~~l~~~~~~~~~-~~nv~~~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~ 395 (484)
++ + .+... .-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+.
T Consensus 225 ---~~--~----~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 293 (357)
T PRK00726 225 ---EE--V----RAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANAR 293 (357)
T ss_pred ---HH--H----HHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHH
Confidence 11 1 11112 22378889984 5789999999 9999999999999999999999997 368999999
Q ss_pred HHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 396 LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 396 ~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
.+ .+.|.|..++.+ .++++.|.++|.++++|++..++++++++++
T Consensus 294 ~i-~~~~~g~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 294 AL-VDAGAALLIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HH-HHCCCEEEEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 99 499999999877 5789999999999999885555555544433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=3.8e-18 Score=167.91 Aligned_cols=328 Identities=19% Similarity=0.173 Sum_probs=196.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (484)
+|++.+.++.||+...+.|++.|.++||+|++++...... . ... ...++++..++... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~----~~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLV-----PKAGIPLHTIPVGG----LRRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hcc-----cccCCceEEEEecC----cCCC-------
Confidence 5889999999999999999999999999999998753211 0 110 01246666665321 1000
Q ss_pred CccchHHHHHHH--HHHchHHHHHHHHhcCCCCeEEEecCC--CcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhccc
Q 011490 90 PSMALLPKFFAA--IEMLRLPLETLFKEIQPKPSCLISDVC--LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (484)
Q Consensus 90 ~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (484)
..+..+... .-.....+.+++++ .+||+|++... ...+..+|...|+|++.....
T Consensus 63 ---~~~~~~~~~~~~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~---------------- 121 (350)
T cd03785 63 ---GSLKKLKAPFKLLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN---------------- 121 (350)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC----------------
Confidence 111121111 12233456677888 89999998763 345667888899999862110
Q ss_pred CCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeCcc
Q 011490 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGPV 245 (484)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~ 245 (484)
..|+. .... ....++.++..+-...+ + ..+.++.++|+.
T Consensus 122 -----------~~~~~--------------------~~~~--~~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n~ 160 (350)
T cd03785 122 -----------AVPGL--------------------ANRL--LARFADRVALSFPETAK-----Y---FPKDKAVVTGNP 160 (350)
T ss_pred -----------CCccH--------------------HHHH--HHHhhCEEEEcchhhhh-----c---CCCCcEEEECCC
Confidence 00110 0000 11223444443322111 1 113567778864
Q ss_pred cCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCCc
Q 011490 246 SLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSST-RQLIELGLGLEATKKPFIWVIRPGDQAKGL 324 (484)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (484)
........ .+. .+.+...+++++|++..|+...... +.+..++..+...+..+++.+|.+. .
T Consensus 161 v~~~~~~~------------~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~----~ 223 (350)
T cd03785 161 VREEILAL------------DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD----L 223 (350)
T ss_pred CchHHhhh------------hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc----H
Confidence 43211000 001 1222222334466666676543211 2222334444433455666776652 1
Q ss_pred hhhhhhhHHHHHhcCCCeEeeCcC-ChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc----ccchhhHHHHHHH
Q 011490 325 EDWLLAEKFEERIEGRGLLIRGWA-PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEKLVVQ 399 (484)
Q Consensus 325 ~~~~l~~~~~~~~~~~nv~~~~~~-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~~~e 399 (484)
++ +.+...+ . ..|+.+.+|+ +...+|..+++ +|+++|.++++||+++|+|+|++|. ..+|..|+..+.
T Consensus 224 ~~--l~~~~~~-~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~- 296 (350)
T cd03785 224 EE--VKKAYEE-L-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV- 296 (350)
T ss_pred HH--HHHHHhc-c-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-
Confidence 11 2221211 1 4689999998 55779999999 9999999999999999999999986 357889999994
Q ss_pred HhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 400 VLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 400 ~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
+.|.|..++.. ..+.++|.++|..+++|++..+.+++++++.
T Consensus 297 ~~g~g~~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 297 KAGAAVLIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred hCCCEEEEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 89999999765 4689999999999998875555555555443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=7.4e-17 Score=158.60 Aligned_cols=320 Identities=16% Similarity=0.158 Sum_probs=179.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
|||+|++.+..||+...+.||++|.++||+|++++.+.... .... ...+++++.++.. . ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~-------~-~~~--- 62 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG-------G-LRR--- 62 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc-------C-cCC---
Confidence 47999999999999988899999999999999998643211 0110 0125666665421 0 000
Q ss_pred CCccchHHHHHH--HHHHchHHHHHHHHhcCCCCeEEEecCCC--cchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc
Q 011490 89 LPSMALLPKFFA--AIEMLRLPLETLFKEIQPKPSCLISDVCL--PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (484)
Q Consensus 89 ~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 164 (484)
......+.. ........+.+++++ .+||+|++.... ..+..+++..++|.+.+.. .
T Consensus 63 ---~~~~~~l~~~~~~~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~-------------- 122 (348)
T TIGR01133 63 ---KGSFRLIKTPLKLLKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-N-------------- 122 (348)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-C--------------
Confidence 011111111 112234456778888 899999998643 3455678889999874210 0
Q ss_pred cCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeCc
Q 011490 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGP 244 (484)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 244 (484)
..++. ..+. ..+.++.++..+-. .. ..+ ...++|.
T Consensus 123 ------------~~~~~--------------------~~~~--~~~~~d~ii~~~~~-~~--------~~~--~~~~i~n 157 (348)
T TIGR01133 123 ------------AVPGL--------------------TNKL--LSRFAKKVLISFPG-AK--------DHF--EAVLVGN 157 (348)
T ss_pred ------------CCccH--------------------HHHH--HHHHhCeeEECchh-Hh--------hcC--CceEEcC
Confidence 00000 0000 11223344433321 11 111 2245664
Q ss_pred ccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCC
Q 011490 245 VSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLE---ATKKPFIWVIRPGDQA 321 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~ 321 (484)
-+....... +. -.+++.-.++.++|.+..|+... ......+.++++ ..+.++++..+++.
T Consensus 158 ~v~~~~~~~------------~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~-- 220 (348)
T TIGR01133 158 PVRQEIRSL------------PV-PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND-- 220 (348)
T ss_pred CcCHHHhcc------------cc-hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch--
Confidence 322110000 00 01122222233355554555442 121122334443 33456665554432
Q ss_pred CCchhhhhhhHHHHHhcCCCe-EeeCcC--ChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccc---cchhhHHH
Q 011490 322 KGLEDWLLAEKFEERIEGRGL-LIRGWA--PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF---ADQFCNEK 395 (484)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~nv-~~~~~~--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~ 395 (484)
. +.+.......++ .+..|. +...+|+.+++ +|+++|.++++||+++|+|+|++|.. .+|..|+.
T Consensus 221 -------~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 290 (348)
T TIGR01133 221 -------L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAK 290 (348)
T ss_pred -------H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHH
Confidence 1 112121222121 222333 45778999999 99999988999999999999999873 46788998
Q ss_pred HHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011490 396 LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAR 452 (484)
Q Consensus 396 ~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~ 452 (484)
.+ +..|.|..++.. ..++++|.+++.++++|++..+.+.++++
T Consensus 291 ~i-~~~~~G~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 291 FL-EDLGAGLVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HH-HHCCCEEEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99 589999988766 46899999999999998744444444443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=3.2e-16 Score=155.07 Aligned_cols=351 Identities=14% Similarity=0.068 Sum_probs=200.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
+||+|.+.++.||++|. +|+++|+++|++|.|++.... .+++..- . ..+++..++. .++.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~---~--~~~~~~~l~v----~G~~-------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC---E--VLYSMEELSV----MGLR-------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC---c--cccChHHhhh----ccHH--------
Confidence 58999999999999999 999999999999999975421 2333210 0 0133322221 0110
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC-CCcc--hHHHHHHcCCCcEEEecchHHHHHHHHhhhhccc
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV-CLPW--TVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~~--a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (484)
..+..+.. .........+++++ .+||+||.-. .... ....|+.+|||++.+.+.....+
T Consensus 66 ----~~l~~~~~-~~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw----------- 127 (385)
T TIGR00215 66 ----EVLGRLGR-LLKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAW----------- 127 (385)
T ss_pred ----HHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhc-----------
Confidence 01112111 12334466777888 8999999644 2223 23388899999997532211110
Q ss_pred CCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhh-hcccEEEeccccccCHHHHHHHHhccCCceEEeCc
Q 011490 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAE-MASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVGP 244 (484)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 244 (484)
... . .+.+ +.++. +.-+++ .+... +.. .+.+..+||.
T Consensus 128 ----------------------~~~-----------~---~r~l~~~~d~-v~~~~~-~e~~~---~~~-~g~~~~~vGn 165 (385)
T TIGR00215 128 ----------------------RKW-----------R---AKKIEKATDF-LLAILP-FEKAF---YQK-KNVPCRFVGH 165 (385)
T ss_pred ----------------------Ccc-----------h---HHHHHHHHhH-hhccCC-CcHHH---HHh-cCCCEEEECC
Confidence 000 0 0111 11222 222222 23222 221 2346677884
Q ss_pred ccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCC
Q 011490 245 VSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGD 319 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~ 319 (484)
-......... .+..+..+-+.-.+++++|.+..||....-......++++++.. +.++++......
T Consensus 166 Pv~~~~~~~~---------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~ 236 (385)
T TIGR00215 166 PLLDAIPLYK---------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK 236 (385)
T ss_pred chhhhccccC---------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch
Confidence 3322110000 00111222223333456888888887653233444556555432 344555544322
Q ss_pred CCCCchhhhhhhHHHHHhc-CCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecc----cccc------
Q 011490 320 QAKGLEDWLLAEKFEERIE-GRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW----PFFA------ 388 (484)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~-~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~------ 388 (484)
.... + +.+..... ...+.+..+ +...++..+++ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 237 ~~~~-----~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~ 306 (385)
T TIGR00215 237 RRLQ-----F-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRL 306 (385)
T ss_pred hHHH-----H-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 1111 1 11111111 123333332 33568999999 9999999988 999999999999 8742
Q ss_pred ---chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHH
Q 011490 389 ---DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG----EERDERRRRAREYGETAKTA 461 (484)
Q Consensus 389 ---DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~----~~~~~~r~~a~~l~~~~~~~ 461 (484)
.|..|+..++ ..++...+-.. ..|++.|.+.+.++++|+ ++.+.+++..+++.+.+.
T Consensus 307 ~~~~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~-- 370 (385)
T TIGR00215 307 VKTDYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY-- 370 (385)
T ss_pred HcCCeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc--
Confidence 2778999995 88888887766 599999999999999998 888888888888877763
Q ss_pred HhhCCChHHHHHHHH
Q 011490 462 IEEGGSSYLNIKLLI 476 (484)
Q Consensus 462 ~~~gg~~~~~~~~~~ 476 (484)
++|.+.++.+.++
T Consensus 371 --~~~~~~~~a~~i~ 383 (385)
T TIGR00215 371 --CNADSERAAQAVL 383 (385)
T ss_pred --CCCHHHHHHHHHh
Confidence 4455555555443
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=1.6e-14 Score=143.72 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHh--cCCCeEeeCcCCh-hhh
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERI--EGRGLLIRGWAPQ-VVI 353 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~nv~~~~~~pq-~~l 353 (484)
++++|++..|+.... +.+..+++++.+. +.++++..|.+.. +-+.+.... .+.|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 445788877887542 2345677777653 5677777664321 112222211 1358999999987 479
Q ss_pred cCCCCccccccccchhhHHHHHHcCCCEecc-ccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 354 LSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW-PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 354 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
+..+++ +|+..|..|+.||+++|+|+|+. |..+.+..|+..+ ++.|+|+.. -+.++|.+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~-----------------~~~~~l~~ 330 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI-----------------RDDEEVFA 330 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE-----------------CCHHHHHH
Confidence 999999 99999988999999999999985 6777778899988 588988754 26789999
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 011490 433 AINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 433 ai~~vl~~~~~~~~~r~~a~~ 453 (484)
+|.++++|++..+.+++++++
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 331 KTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred HHHHHHCCHHHHHHHHHHHHH
Confidence 999999988555555555444
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.67 E-value=2.8e-15 Score=141.57 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=78.5
Q ss_pred cEEEEecCCCccCCHHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCchhhhhhhHHHHHh-cCCCeEeeCcCChh-hhcC
Q 011490 280 SAVYVCLGSLCDSSTRQLIELGLGLEAT--KKPFIWVIRPGDQAKGLEDWLLAEKFEERI-EGRGLLIRGWAPQV-VILS 355 (484)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~nv~~~~~~pq~-~ll~ 355 (484)
+.|+|++|..... .....+++++... +.++.+++|++.. ..+.+.... ..+|+.+..|+++. .+|.
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 4689999865532 2445567777653 5678888887542 112222222 24689999999975 7999
Q ss_pred CCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHH
Q 011490 356 HPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKL 396 (484)
Q Consensus 356 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 396 (484)
.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999 999999 9999999999999999999999999864
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=3.1e-14 Score=141.74 Aligned_cols=332 Identities=15% Similarity=0.066 Sum_probs=171.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
+||+|+..++.||++|.+ |+++|+++++++.+++.... .+++.. . ...+.++.++ -
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~---~--~~~~~~~~l~---------~------- 57 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG---C--ESLFDMEELA---------V------- 57 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC---C--ccccCHHHhh---------h-------
Confidence 589999999999999999 99999998888888764321 222220 0 0012222211 0
Q ss_pred CCccchHHHHHH--HHHHchHHHHHHHHhcCCCCeEEEecCC-Ccch--HHHHHHcCCCcEEEecchHHHHHHHHhhhhc
Q 011490 89 LPSMALLPKFFA--AIEMLRLPLETLFKEIQPKPSCLISDVC-LPWT--VSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (484)
Q Consensus 89 ~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~D~vI~D~~-~~~a--~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 163 (484)
..+...+.. ........+.+++++ .+||+|++-.. ..+. ...|.+.|||++.+.... .+
T Consensus 58 ---~g~~~~~~~~~~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~~--------- 121 (380)
T PRK00025 58 ---MGLVEVLPRLPRLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--VW--------- 121 (380)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--hh---------
Confidence 011111111 122345567788888 89999887442 2233 334778899988642110 00
Q ss_pred ccCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC
Q 011490 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 243 (484)
...++. .+. ..+.++.++..+ .. +... +.. .+-++.++|
T Consensus 122 ------------~~~~~~--------------------~~~---~~~~~d~i~~~~-~~-~~~~---~~~-~g~~~~~~G 160 (380)
T PRK00025 122 ------------AWRQGR--------------------AFK---IAKATDHVLALF-PF-EAAF---YDK-LGVPVTFVG 160 (380)
T ss_pred ------------hcCchH--------------------HHH---HHHHHhhheeCC-cc-CHHH---HHh-cCCCeEEEC
Confidence 000000 011 112223333332 11 2121 221 223477788
Q ss_pred cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCC
Q 011490 244 PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPG 318 (484)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~ 318 (484)
.......... .....+.+.+.-.+++++|.+..||...........++++++.. +.+++|+.+..
T Consensus 161 ~p~~~~~~~~----------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~ 230 (380)
T PRK00025 161 HPLADAIPLL----------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP 230 (380)
T ss_pred cCHHHhcccc----------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh
Confidence 3322110000 00111222232223345677777775542222234445544322 34667765422
Q ss_pred CCCCCchhhhhhhHHHHHhcC---CCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchh-hH-
Q 011490 319 DQAKGLEDWLLAEKFEERIEG---RGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF-CN- 393 (484)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~---~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~n- 393 (484)
. .-+.+...... -++.+.. -.-..++..+++ +|+.+|.+++ |++++|+|+|++|-..--+ ..
T Consensus 231 ~---------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~ 297 (380)
T PRK00025 231 K---------RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIA 297 (380)
T ss_pred h---------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHH
Confidence 2 11122222211 1333322 123568899999 9999999888 9999999999995432111 11
Q ss_pred -----------HHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 394 -----------EKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 394 -----------a~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
+..+ +..+++..+... ..++++|.+++.++++|++..++++++++++.+.+
T Consensus 298 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 298 KRLVKVPYVSLPNLL-AGRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred HHHHcCCeeehHHHh-cCCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 1222 122333333333 47899999999999999966666666665555543
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.62 E-value=1.7e-14 Score=143.61 Aligned_cols=148 Identities=12% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHH-h-CCCCEEEEEeCCCCCCCchhhhhhhHHHHHh-cCCCeEeeCcCCh-hhh
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLE-A-TKKPFIWVIRPGDQAKGLEDWLLAEKFEERI-EGRGLLIRGWAPQ-VVI 353 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~nv~~~~~~pq-~~l 353 (484)
++++|+++.|+.+.. ..+..+++++. . .+.++++..|.+.. +-+.+.+.. ...++.+.+|+++ ..+
T Consensus 201 ~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 455888888987631 34455555543 2 24577676664421 112222222 2458889999975 469
Q ss_pred cCCCCccccccccchhhHHHHHHcCCCEecc-ccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 354 LSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW-PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 354 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
+..+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+ ++.|+|+.. -+.+++.+
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~~ 330 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAIK 330 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHHH
Confidence 999999 99988888999999999999998 7767778899999 599999764 26788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 011490 433 AINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 433 ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
+|.++++|++..+.+++|+++++
T Consensus 331 ~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 331 IVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999998765556666665543
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=4.8e-13 Score=132.58 Aligned_cols=142 Identities=19% Similarity=0.154 Sum_probs=92.4
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHhC----CCCEEEEEeCCCCCCCchhhhhhh-HHHH---------HhcCCCeEe
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEAT----KKPFIWVIRPGDQAKGLEDWLLAE-KFEE---------RIEGRGLLI 344 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~l~~-~~~~---------~~~~~nv~~ 344 (484)
+++|.+--||....-.+.+..++++++.. +..|++.+.++.....+... +.+ ++.. ....+++.+
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~~~~~~~v 283 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAI-LEDLGWQLEGSSEDQTSLFQKGTLEV 283 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHH-HHhcCceecCCccccchhhccCceEE
Confidence 45899999998653334444555555543 67788888544321111110 000 0000 000123555
Q ss_pred eCcCC-hhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHh----cceeEeccCCCCCCcccc
Q 011490 345 RGWAP-QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL----RIGVTIGAERPPSLADEE 419 (484)
Q Consensus 345 ~~~~p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~----G~g~~l~~~~~~~~~~~~ 419 (484)
..+.. ...++..+++ +|+-.|..| .|++..|+|+|++|.-..|. |+... ++. |.++.+...
T Consensus 284 ~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~~--------- 349 (396)
T TIGR03492 284 LLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLASK--------- 349 (396)
T ss_pred EechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCCC---------
Confidence 55543 4669999999 999999766 99999999999999877776 88776 454 767776533
Q ss_pred cCCCccCHHHHHHHHHHHhcCC
Q 011490 420 RNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 420 ~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
+.+.|.+++.++++|+
T Consensus 350 ------~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 350 ------NPEQAAQVVRQLLADP 365 (396)
T ss_pred ------CHHHHHHHHHHHHcCH
Confidence 4599999999999886
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.57 E-value=5.2e-13 Score=122.82 Aligned_cols=337 Identities=15% Similarity=0.140 Sum_probs=192.6
Q ss_pred CcEEEEEcCC--CCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 8 QLHFILFPFL--AQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 8 ~~kil~~~~~--~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
.+||+|++.- +.||+..++.+|+.|++. |.+|++++.......+. ...+++|+.+|.-... .++.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPsl~k~---~~G~ 77 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPSLIKG---DNGE 77 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCceEec---CCCc
Confidence 5699999987 669999999999999998 99999998753222111 1247999998732111 1111
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhc
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 163 (484)
........ + ..+........+...++. .+||++|+|.+-.+. .-+.+ |..- +. -.
T Consensus 78 ~~~~d~~~-~----l~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~Gl--r~EL~--ptL~-----------yl--~~- 132 (400)
T COG4671 78 YGLVDLDG-D----LEETKKLRSQLILSTAET--FKPDIFIVDKFPFGL--RFELL--PTLE-----------YL--KT- 132 (400)
T ss_pred eeeeecCC-C----HHHHHHHHHHHHHHHHHh--cCCCEEEEeccccch--hhhhh--HHHH-----------HH--hh-
Confidence 11111111 1 222222334455666677 899999999974331 01100 1100 00 00
Q ss_pred ccCCCCCCCCcccccCCCCCccccccccCchhhh----hhhhHHHHHHhhhcccEEEeccccccCHHHHH-HHHhccCCc
Q 011490 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEEMEPAYVE-EYKNARDGK 238 (484)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~-~~~~~~~~~ 238 (484)
..+..+-++.+ .++.+.... .....+.+.+ .-+.+++-..+.+...... .+.......
T Consensus 133 ---------~~t~~vL~lr~-----i~D~p~~~~~~w~~~~~~~~I~r---~yD~V~v~GdP~f~d~~~~~~~~~~i~~k 195 (400)
T COG4671 133 ---------TGTRLVLGLRS-----IRDIPQELEADWRRAETVRLINR---FYDLVLVYGDPDFYDPLTEFPFAPAIRAK 195 (400)
T ss_pred ---------cCCcceeehHh-----hhhchhhhccchhhhHHHHHHHH---hheEEEEecCccccChhhcCCccHhhhhh
Confidence 00000011111 111111111 1111111111 1223333333322211000 112223368
Q ss_pred eEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHh-CCCC--EEEEE
Q 011490 239 VWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEA-TKKP--FIWVI 315 (484)
Q Consensus 239 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~ 315 (484)
+.|+|-+ -.+..... . .|... +++--|+||-|--.. ..+.+...++|... .+.+ .++.+
T Consensus 196 ~~ytG~v-q~~~~~~~-----------~----p~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivt 257 (400)
T COG4671 196 MRYTGFV-QRSLPHLP-----------L----PPHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVT 257 (400)
T ss_pred eeEeEEe-eccCcCCC-----------C----CCcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEe
Confidence 8999987 22111100 0 01111 333368888875442 23555556666554 3433 77778
Q ss_pred eCCCCCCCchhhhhhhHHHH---Hh--cCCCeEeeCcCCh-hhhcCCCCccccccccchhhHHHHHHcCCCEecccccc-
Q 011490 316 RPGDQAKGLEDWLLAEKFEE---RI--EGRGLLIRGWAPQ-VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA- 388 (484)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~---~~--~~~nv~~~~~~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~- 388 (484)
|+. +|..... .. +.+++.+.+|-.+ ..++..++. +|+-||+||++|-|.+|+|.|++|...
T Consensus 258 GP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p 325 (400)
T COG4671 258 GPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAP 325 (400)
T ss_pred CCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCC
Confidence 876 4432111 11 2379999999865 668888888 999999999999999999999999854
Q ss_pred --chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 389 --DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 389 --DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
+|-.=|.|+ +++|+.-.+-++ .+++..++++|...++-|
T Consensus 326 ~eEQliRA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~~P 366 (400)
T COG4671 326 REEQLIRAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALARP 366 (400)
T ss_pred cHHHHHHHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhcccCC
Confidence 899999999 699999888887 699999999999988733
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=5.2e-16 Score=135.46 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=98.7
Q ss_pred EEEEecCCCccCC-HHHHHHHHHHHHh--CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhc-CCCeEeeCcCC-hhhhcC
Q 011490 281 AVYVCLGSLCDSS-TRQLIELGLGLEA--TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIE-GRGLLIRGWAP-QVVILS 355 (484)
Q Consensus 281 ~V~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~nv~~~~~~p-q~~ll~ 355 (484)
+|+|+.||..... .+.+..++..+.. ...++++.+|..... + ....+ .. ..++.+.+|.+ ..+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~----~--~~~~~---~~~~~~v~~~~~~~~m~~~m~ 71 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE----E--LKIKV---ENFNPNVKVFGFVDNMAELMA 71 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH----H--HCCCH---CCTTCCCEEECSSSSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH----H--HHHHH---hccCCcEEEEechhhHHHHHH
Confidence 5899999877521 1122223333333 257899999876321 1 11111 01 26899999999 788999
Q ss_pred CCCccccccccchhhHHHHHHcCCCEecccccc----chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 356 HPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA----DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 356 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
.+++ +|||||.||++|++.+|+|+|++|... +|..||..+ ++.|+|..+... ..+.+.|.
T Consensus 72 ~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~-------------~~~~~~L~ 135 (167)
T PF04101_consen 72 AADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES-------------ELNPEELA 135 (167)
T ss_dssp HHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC-------------C-SCCCHH
T ss_pred HcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc-------------cCCHHHHH
Confidence 9999 999999999999999999999999988 999999999 499999999877 57899999
Q ss_pred HHHHHHhcCC
Q 011490 432 KAINMLMDEG 441 (484)
Q Consensus 432 ~ai~~vl~~~ 441 (484)
++|.++++++
T Consensus 136 ~~i~~l~~~~ 145 (167)
T PF04101_consen 136 EAIEELLSDP 145 (167)
T ss_dssp HHHHCHCCCH
T ss_pred HHHHHHHcCc
Confidence 9999999876
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=3.2e-12 Score=127.10 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=98.8
Q ss_pred CCCcEEEEecCCCccCCHHHHHHHHHHHHh---------CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCc
Q 011490 277 QPGSAVYVCLGSLCDSSTRQLIELGLGLEA---------TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGW 347 (484)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~ 347 (484)
+++++|.+..|+...... ..+++++.. .+.++++.+|.+.. +-+.+.......++.+.+|
T Consensus 204 ~~~~~il~~Gg~~g~~~~---~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPL---EETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGF 272 (382)
T ss_pred CCCcEEEEECCCcccccH---HHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEec
Confidence 445677777776654332 233333322 34566777765421 2122222212346888899
Q ss_pred CCh-hhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchh-hHHHHHHHHhcceeEeccCCCCCCcccccCCCcc
Q 011490 348 APQ-VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF-CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPV 425 (484)
Q Consensus 348 ~pq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~ 425 (484)
+++ ..++..+++ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+. +.|.|+.+ .
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~--------------- 332 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--E--------------- 332 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec--C---------------
Confidence 985 569999999 999999999999999999999998777775 6898884 88998754 3
Q ss_pred CHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDE-GEERDERRRRAR 452 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~-~~~~~~~r~~a~ 452 (484)
++++|.++|.++++| ++..+.++++++
T Consensus 333 ~~~~la~~i~~ll~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSDELEAMSENAL 360 (382)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999987 533334444433
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=1.1e-13 Score=116.85 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=79.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCC
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLP 90 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (484)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.+ ..+.... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~---~~~~~~~---~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD---SRLPRSL---EPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC---GGGGHHH---HHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC---cCcCccc---chhh
Confidence 78999999999999999999999999999999999888877665 7999987632 0000000 0000
Q ss_pred ccchHHHHHHHHHHchHHHHHHHHhc------CCCCeEEEecCCCcchHHHHHHcCCCcEEEecch
Q 011490 91 SMALLPKFFAAIEMLRLPLETLFKEI------QPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
................+.+.+...+. ....|+++++.....+..+|+++|||++.....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 00001111111222223333322221 1467888888887889999999999999976554
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.38 E-value=2.8e-10 Score=111.93 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=91.7
Q ss_pred EEEEecCCCcc-CCHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhh---hcC
Q 011490 281 AVYVCLGSLCD-SSTRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVV---ILS 355 (484)
Q Consensus 281 ~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~---ll~ 355 (484)
.+++..|+... ...+.+.+++..+... +..+++.. .+.. .+.+. ....|+.+.+|+++.+ ++.
T Consensus 198 ~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G-~~~~---------~~~~~--~~~~~v~~~g~~~~~~~~~~~~ 265 (364)
T cd03814 198 PVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVG-DGPA---------RARLE--ARYPNVHFLGFLDGEELAAAYA 265 (364)
T ss_pred eEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEe-CCch---------HHHHh--ccCCcEEEEeccCHHHHHHHHH
Confidence 56667777553 2233344444444332 34544443 3321 11111 2367899999998655 788
Q ss_pred CCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 356 HPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 356 ~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
.+++ +|+.+. .++++||+++|+|+|+.+..+ +...+ +..+.|...+.. +.+++.
T Consensus 266 ~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~~---------------~~~~l~ 323 (364)
T cd03814 266 SADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEPG---------------DAEAFA 323 (364)
T ss_pred hCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCCC---------------CHHHHH
Confidence 9998 887664 378999999999999887554 45556 466888777544 778899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 011490 432 KAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 432 ~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
++|.++++|++..+.+.+++++..
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 324 AALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999866556655555544
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.35 E-value=9.4e-10 Score=112.38 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=94.7
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhh---hcCC
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVV---ILSH 356 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~---ll~~ 356 (484)
.+++..|++.. .+.+..++++++.. +.++++ +|.+. .-+.+.......++.+.+++++.+ ++..
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 44555677653 33455677777765 455554 44332 222333344456899999998544 7888
Q ss_pred CCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHH---hcceeEeccCCCCCCcccccCCCccCHHH
Q 011490 357 PAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV---LRIGVTIGAERPPSLADEERNGVPVKKED 429 (484)
Q Consensus 357 ~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~---~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
+++ +|.-.. -+++.||+++|+|+|+.... .....+ +. -+.|..++.. +.++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~~ 389 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVDD 389 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHHH
Confidence 888 885443 34688999999999987643 233344 34 5678777654 7899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011490 430 VKKAINMLMDEGEERDERRRRAREYGE 456 (484)
Q Consensus 430 l~~ai~~vl~~~~~~~~~r~~a~~l~~ 456 (484)
+.++|.++++|++..+.+.+++++..+
T Consensus 390 la~~i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 390 CVEKLETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999988766677777766543
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=4.9e-09 Score=102.77 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=88.0
Q ss_pred cEEEEecCCCccCCHHHHHHHHHHHHhC---CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhh---h
Q 011490 280 SAVYVCLGSLCDSSTRQLIELGLGLEAT---KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVV---I 353 (484)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~---l 353 (484)
+.+++..|++... +....++++++.. +.++++. |..... ...........++.+.+|+++.+ +
T Consensus 191 ~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~l~i~-G~~~~~--------~~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 191 RLRFGFIGQLTPH--KGVDLLLEAFKRLPRGDIELVIV-GNGLEL--------EEESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred ceEEEEEecCccc--cCHHHHHHHHHHHHhcCcEEEEE-cCchhh--------hHHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 3566677776542 2333444454433 4555544 333211 00000012357899999997544 6
Q ss_pred cCCCCccccccc----cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHH
Q 011490 354 LSHPAIGGFLTH----CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKE 428 (484)
Q Consensus 354 l~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 428 (484)
+..+++ +|+. .|. .++.||+++|+|+|+.+. ..+...+ +..+.|...+.. +.+
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~---------------d~~ 317 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG---------------DAE 317 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC---------------CHH
Confidence 888888 7732 333 478999999999998754 3456666 465578777654 689
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 011490 429 DVKKAINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 429 ~l~~ai~~vl~~~~~~~~~r~~a~~ 453 (484)
++.+++.++++|++..+.+++++++
T Consensus 318 ~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 318 DLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred HHHHHHHHHHhChHHHHHHHHhHHH
Confidence 9999999999988555555555443
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.27 E-value=3.6e-09 Score=104.72 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=93.0
Q ss_pred CcEEEEecCCCccC-CHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhh---h
Q 011490 279 GSAVYVCLGSLCDS-STRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVV---I 353 (484)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~---l 353 (484)
++.+++..|+.... ..+.+..++..+... +.++++ +|.+.... . +. .+......+|+.+.+++++.+ +
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~~~---~--~~-~~~~~~~~~~v~~~g~~~~~~~~~~ 291 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPEKE---E--LK-ELAKALGLDNVTFLGRVPKEELPEL 291 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcccHH---H--HH-HHHHHcCCCcEEEeCCCChHHHHHH
Confidence 34677777876542 233344444444333 445444 44332111 1 11 111233467899999998654 6
Q ss_pred cCCCCccccccccc---------hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCc
Q 011490 354 LSHPAIGGFLTHCG---------WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVP 424 (484)
Q Consensus 354 l~~~~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~ 424 (484)
+..+++ +|.... -+++.||+++|+|+|+.+..+.+.... ..+.|...+..
T Consensus 292 ~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~-----~~~~g~~~~~~-------------- 350 (394)
T cd03794 292 LAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVE-----EAGAGLVVPPG-------------- 350 (394)
T ss_pred HHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhc-----cCCcceEeCCC--------------
Confidence 788888 764332 234799999999999988766544332 33667776544
Q ss_pred cCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011490 425 VKKEDVKKAINMLMDEGEERDERRRRAREYGE 456 (484)
Q Consensus 425 ~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~ 456 (484)
+.+++.++|.++++|++..+.+++++++...
T Consensus 351 -~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 351 -DPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred -CHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7899999999999988777777777666655
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=3.6e-10 Score=101.25 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=102.3
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHh-cCCCeEeeCcCC-hhhhcCCCC
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERI-EGRGLLIRGWAP-QVVILSHPA 358 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~nv~~~~~~p-q~~ll~~~~ 358 (484)
-|+|++|-.- +....-+++..++..++.+-++++... +.++ .+..+. ..+|+....... ...++..++
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~--p~l~------~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN--PTLK------NLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC--cchh------HHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 5999998532 233556688888887777666776432 2222 222222 356776655554 456999999
Q ss_pred ccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 359 IGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 359 ~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
+ .|+-||. |+.|++.-|+|.+++|+...|--.|... |.+|+-..++.. +..+.....+..+.
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~ 291 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH--------------LKDLAKDYEILQIQ 291 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC--------------CchHHHHHHHHHhh
Confidence 9 9998885 8999999999999999999999999999 699988877654 66777777788888
Q ss_pred cCChhHHHHHHHHHH
Q 011490 439 DEGEERDERRRRARE 453 (484)
Q Consensus 439 ~~~~~~~~~r~~a~~ 453 (484)
+|. ..|.+...
T Consensus 292 ~d~----~~rk~l~~ 302 (318)
T COG3980 292 KDY----ARRKNLSF 302 (318)
T ss_pred hCH----HHhhhhhh
Confidence 877 55554443
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.22 E-value=2e-08 Score=100.55 Aligned_cols=97 Identities=19% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCCeEeeCcCChhh---hcCCCCcccccc---ccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+.. .......+ +.-..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~~- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDFF- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCCC-
Confidence 56899999999754 6778888 653 2232 48999999999999864 34455555 354567766544
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
+++++.++|.++++|++..+.+.+++++..+.
T Consensus 352 --------------d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 352 --------------DPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred --------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 79999999999999886666666666655443
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.21 E-value=1.8e-08 Score=99.85 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCeEeeCcCCh-hhhcCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCC
Q 011490 339 GRGLLIRGWAPQ-VVILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 413 (484)
Q Consensus 339 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~ 413 (484)
.+++.+.++.++ ..++..+++ +|.- |.-.++.||+++|+|+|+... ...+..+ ++-..|...+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~~--- 321 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDVG--- 321 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCCC---
Confidence 457888888775 558888888 6633 334599999999999998644 3455555 354567666543
Q ss_pred CCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 414 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
+.+++.+++..+++|++...++++++++.
T Consensus 322 ------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 322 ------------DVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78999999999999886666666666665
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.19 E-value=2.2e-08 Score=98.64 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCeEeeCcCChhh---hcCCCCcccccccc----chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+|+.+.+++|+.+ ++..+++ +|... ..+++.||+++|+|+|+... ...+..+ +..+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 56899999998754 6888888 77443 34689999999999998653 4455666 466778888655
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
+. ++.+++.++++|++..+.+.+++++..+..
T Consensus 330 --------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 330 --------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred --------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 22 999999999998866666666666666554
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.18 E-value=4.4e-08 Score=98.48 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=67.1
Q ss_pred cCCCeEee-CcCChhh---hcCCCCcccccc-c---cc---hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeE
Q 011490 338 EGRGLLIR-GWAPQVV---ILSHPAIGGFLT-H---CG---WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 406 (484)
Q Consensus 338 ~~~nv~~~-~~~pq~~---ll~~~~~~~~I~-H---gG---~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~ 406 (484)
.-+|++.. +|+|..+ +|..+++ +|. + -| -+++.||+++|+|+|+... ......+ ++-+.|..
T Consensus 292 ~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~l 364 (415)
T cd03816 292 KLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLV 364 (415)
T ss_pred CCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEE
Confidence 33566655 5887544 6888898 663 1 12 3479999999999999643 3455556 57677877
Q ss_pred eccCCCCCCcccccCCCccCHHHHHHHHHHHhcC---ChhHHHHHHHHHHHH
Q 011490 407 IGAERPPSLADEERNGVPVKKEDVKKAINMLMDE---GEERDERRRRAREYG 455 (484)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~---~~~~~~~r~~a~~l~ 455 (484)
+ . +.++|+++|..+++| ++..+.+++++++..
T Consensus 365 v--~---------------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 365 F--G---------------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred E--C---------------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 6 2 579999999999998 766777777777665
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=1.5e-08 Score=101.25 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=92.4
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCCc--hhhhhhhHHHHHhc-CCCeEeeCcCChhh
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAKGL--EDWLLAEKFEERIE-GRGLLIRGWAPQVV 352 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~--~~~~l~~~~~~~~~-~~nv~~~~~~pq~~ 352 (484)
.+++..|+.... +....+++++... +.++++..+........ .. + ..+.+... ..|+.+.+|+|+.+
T Consensus 221 ~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~--~-~~~~~~~~~~~~v~~~g~~~~~~ 295 (398)
T cd03800 221 PRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEE--L-RELARELGVIDRVDFPGRVSRED 295 (398)
T ss_pred cEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHH--H-HHHHHhcCCCceEEEeccCCHHH
Confidence 566677876542 2334445555432 45555555443211000 00 0 01111112 46899999999765
Q ss_pred ---hcCCCCcccccccc---c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCcc
Q 011490 353 ---ILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPV 425 (484)
Q Consensus 353 ---ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~ 425 (484)
++..+++ +++.. | -.++.||+++|+|+|+.+..+ ....+ +..+.|...+..
T Consensus 296 ~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~~--------------- 353 (398)
T cd03800 296 LPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDPR--------------- 353 (398)
T ss_pred HHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCCC---------------
Confidence 5888888 77542 2 358999999999999876433 45556 466788877644
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
+.+++.++|.++++|++..+.+.+++++..
T Consensus 354 ~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 354 DPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 789999999999998866666666665554
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.14 E-value=5.3e-08 Score=95.06 Aligned_cols=329 Identities=16% Similarity=0.129 Sum_probs=170.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (484)
||++++....|+......|+++|.++||+|++++....... .. ...++++..++.. .. . .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~-----~~~~~~~~~~~~~-------~~--~---~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---EL-----EALGVKVIPIPLD-------RR--G---I 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---cc-----ccCCceEEecccc-------cc--c---c
Confidence 57888887889999999999999999999999987654332 10 1124666554421 00 0 0
Q ss_pred CccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc--chHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCC
Q 011490 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLP--WTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (484)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (484)
..+..+. ....+..++++ .+||+|++..... .+..++...+.|.+.+.........
T Consensus 61 ---~~~~~~~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 ---NPFKDLK-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ---ChHhHHH-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 1111111 12245566777 7999999886432 2344455466666654322211100
Q ss_pred CCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHH-HhhhcccEEEeccccccCHHHHHHHHhccC---CceEEeC
Q 011490 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPIL-AAEMASYGVIVNSFEEMEPAYVEEYKNARD---GKVWCVG 243 (484)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~~vG 243 (484)
.... . .......+. .....++.++..+....+ .+..... .....+.
T Consensus 119 ------------~~~~---~----------~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~ 168 (359)
T cd03808 119 ------------TSGG---L----------KRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIP 168 (359)
T ss_pred ------------ccch---h----------HHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEec
Confidence 0000 0 000011111 122344555555533221 2222111 1222222
Q ss_pred cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccC-CHHHHHHHHHHHHh--CCCCEEEEEeCCCC
Q 011490 244 PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDS-STRQLIELGLGLEA--TKKPFIWVIRPGDQ 320 (484)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~ 320 (484)
|......... .... . ..+++.+++..|+.... ..+.+.+.+..+.+ .+.++++.. ....
T Consensus 169 ~~~~~~~~~~------------~~~~-~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G-~~~~ 230 (359)
T cd03808 169 GSGVDLDRFS------------PSPE-P----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVG-DGDE 230 (359)
T ss_pred CCCCChhhcC------------cccc-c----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEc-CCCc
Confidence 2211110000 0000 0 12234677777876542 23334444444433 234444443 3322
Q ss_pred CCCchhhhhhhHHHHHhcCCCeEeeCcCCh-hhhcCCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHH
Q 011490 321 AKGLEDWLLAEKFEERIEGRGLLIRGWAPQ-VVILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEK 395 (484)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq-~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~ 395 (484)
...... . .........++.+.++..+ ..++..+++ +|.... -+++.||+++|+|+|+.+.. .+..
T Consensus 231 ~~~~~~--~--~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~ 300 (359)
T cd03808 231 ENPAAI--L--EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCRE 300 (359)
T ss_pred chhhHH--H--HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchh
Confidence 111000 0 0111122467888787543 558888988 775443 57899999999999986544 3445
Q ss_pred HHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 396 LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 396 ~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
.+ +..+.|...+.. +.+++.++|.++++|++..+.+.+++++.
T Consensus 301 ~i-~~~~~g~~~~~~---------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 301 AV-IDGVNGFLVPPG---------------DAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred hh-hcCcceEEECCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 55 456678777544 78999999999999886655666565555
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.13 E-value=7.1e-08 Score=94.38 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=69.2
Q ss_pred cCCCeEeeCcCChh---hhcCCCCcccccc----ccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC
Q 011490 338 EGRGLLIRGWAPQV---VILSHPAIGGFLT----HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 338 ~~~nv~~~~~~pq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
...++.+.+++++. .++..+++ +|. -|.-++++||+++|+|+|+.+. ..+...+ +..+.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCCC
Confidence 46789999999743 47888888 773 2456789999999999998765 4456666 466778777544
Q ss_pred CCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011490 411 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAR 452 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~ 452 (484)
+.+++.++|.++++|++..+++.++++
T Consensus 327 ---------------~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 327 ---------------DPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ---------------CHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 689999999999998854444444444
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.12 E-value=3.7e-07 Score=91.89 Aligned_cols=165 Identities=19% Similarity=0.155 Sum_probs=98.8
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC----CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChh---hh
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT----KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQV---VI 353 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~---~l 353 (484)
.+++..|+... .+.+..+++|++.. +.+++ .+|.+...+. + ..........|+.+.+|+|+. .+
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~~~~-----l-~~~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGGGKAR-----L-EKMAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCChhHHH-----H-HHHHHHcCCCceEEeCCCCHHHHHHH
Confidence 55666787753 33455566666543 23444 3443321111 1 111122234589999999864 47
Q ss_pred cCCCCccccccccch------hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCH
Q 011490 354 LSHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKK 427 (484)
Q Consensus 354 l~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~ 427 (484)
+..+++-.+.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++.. +.
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~---------------d~ 360 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE---------------SV 360 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC---------------CH
Confidence 888888434344332 236899999999999865431 122233 3 678888655 78
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 428 EDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 428 ~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
++++++|.++++|++..+.+++++++..+. --+....++++.+.+.+
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHH
Confidence 999999999999886666777777665543 22333555566555554
No 58
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.12 E-value=5e-08 Score=93.36 Aligned_cols=302 Identities=19% Similarity=0.191 Sum_probs=161.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
|||.+--. ..-|+.-+..+.++|.++||+|.+.+-... .+.+.+.. .++++..+... ..
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~~------g~------- 59 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGKH------GD------- 59 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcCC------CC-------
Confidence 34555443 344999999999999999999999886542 33333331 26888776521 00
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCCC
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHES 168 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 168 (484)
....++..... ....+.+++++ .+||++|+-.. +.+..+|..+|+|+|.|.-............|.
T Consensus 60 ----~~~~Kl~~~~~-R~~~l~~~~~~--~~pDv~is~~s-~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pl------ 125 (335)
T PF04007_consen 60 ----SLYGKLLESIE-RQYKLLKLIKK--FKPDVAISFGS-PEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPL------ 125 (335)
T ss_pred ----CHHHHHHHHHH-HHHHHHHHHHh--hCCCEEEecCc-HHHHHHHHHhCCCeEEEecCchhhccceeehhc------
Confidence 22333333332 23445556666 79999997554 678889999999999986654332110000000
Q ss_pred CCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEE-eccccccCHHHHHHHHhccCCceEEeCcccC
Q 011490 169 VSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVI-VNSFEEMEPAYVEEYKNARDGKVWCVGPVSL 247 (484)
Q Consensus 169 ~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~ 247 (484)
......|..-+ ..++. +...+ ..+. .+.+.|+- ++-|+-+
T Consensus 126 ----a~~i~~P~~~~---------------~~~~~---~~G~~-~~i~~y~G~~E~a----------------yl~~F~P 166 (335)
T PF04007_consen 126 ----ADVIITPEAIP---------------KEFLK---RFGAK-NQIRTYNGYKELA----------------YLHPFKP 166 (335)
T ss_pred ----CCeeECCcccC---------------HHHHH---hcCCc-CCEEEECCeeeEE----------------eecCCCC
Confidence 00111111100 00000 00001 1112 33333322 2222111
Q ss_pred CCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCcc----CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC
Q 011490 248 CNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCD----SSTRQLIELGLGLEATKKPFIWVIRPGDQAKG 323 (484)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (484)
+++..+-++.. +.+.|++-+-+..+ .....+..+++.+++.+..+|...+...+.
T Consensus 167 ------------------d~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~-- 225 (335)
T PF04007_consen 167 ------------------DPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQR-- 225 (335)
T ss_pred ------------------ChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchh--
Confidence 23333344322 34577777776444 223446678999988887755444333221
Q ss_pred chhhhhhhHHHHHhcCCCeEe-eCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhc
Q 011490 324 LEDWLLAEKFEERIEGRGLLI-RGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR 402 (484)
Q Consensus 324 ~~~~~l~~~~~~~~~~~nv~~-~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 402 (484)
+ +-+ .-++.+ ..-++..++|.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+. +.|
T Consensus 226 --~--~~~-------~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~G 289 (335)
T PF04007_consen 226 --E--LFE-------KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKG 289 (335)
T ss_pred --h--HHh-------ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCC
Confidence 1 111 112322 244555689999999 998887 6677999999999985 2233222334453 555
Q ss_pred ceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 403 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 403 ~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
+ .. . ..+.+++.+.+.+.+
T Consensus 290 l--l~-~--------------~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 290 L--LY-H--------------STDPDEIVEYVRKNL 308 (335)
T ss_pred C--eE-e--------------cCCHHHHHHHHHHhh
Confidence 4 22 2 257777777665544
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.10 E-value=7.8e-08 Score=93.44 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCeEeeCcCC-hhhhcCCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhc-ceeEeccCCC
Q 011490 339 GRGLLIRGWAP-QVVILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR-IGVTIGAERP 412 (484)
Q Consensus 339 ~~nv~~~~~~p-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G-~g~~l~~~~~ 412 (484)
..++.+.++.. -..++..+++ +|.... -+++.||+++|+|+|+.+..+.+.. +. ..+ .|...+..
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~-~~~~~g~~~~~~-- 304 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----II-EDGVNGLLVPNG-- 304 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hh-ccCcceEEeCCC--
Confidence 45677777743 3568888888 776542 4689999999999998765444332 32 333 77777544
Q ss_pred CCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 413 PSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
+.+++.++|.++++|++..+.++++++++.+.+
T Consensus 305 -------------~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 -------------DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred -------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999977667777766555543
No 60
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.09 E-value=3.2e-07 Score=91.63 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=67.2
Q ss_pred CCCeEeeCcCChh---hhcCCCCccccccc---cc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTH---CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+++.+.+++|.. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+ ...+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC---
Confidence 4689999999965 46888888 6642 22 25789999999999997443 333445 3545566652
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
.+.+++.++|.++++|++..+.+.+++++..
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3689999999999998866667777666543
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=7.1e-08 Score=94.81 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=95.2
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCC-CCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChh---hhcCC
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATK-KPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQV---VILSH 356 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~---~ll~~ 356 (484)
.+++..|+... .+....++++++... .++++...+. ... . +..-..+.....||.+.+|+|+. .++..
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~-~~~---~--~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP-LEA---E--LEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh-hHH---H--HHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 46677777653 344556777777666 5555444322 111 0 11111112235799999999974 47778
Q ss_pred CCcccccc---ccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHH-hcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 357 PAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV-LRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 357 ~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~-~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
+++-++-+ +.|. .++.||+++|+|+|+....+... .+ +. .+.|...+.. +.+++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i-~~~~~~g~~~~~~---------------d~~~~~ 323 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YV-NLHGVTGLVVPPG---------------DPAALA 323 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HH-hhCCCceEEeCCC---------------CHHHHH
Confidence 88822223 2343 37899999999999975554443 33 23 4667666543 899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 432 KAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 432 ~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
++|.++++|++..+.+++++++..++
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999997777777777776544
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.08 E-value=8.5e-08 Score=96.95 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=64.6
Q ss_pred hhhcCCCCccccccc-----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCcc
Q 011490 351 VVILSHPAIGGFLTH-----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPV 425 (484)
Q Consensus 351 ~~ll~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~ 425 (484)
..++..+++ ++.. +|..+++||+++|+|+|+.|...++......+ ++.|+++.. -
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~-----------------~ 373 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV-----------------E 373 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE-----------------C
Confidence 457788887 4432 33345999999999999999988888887777 466665543 3
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
++++|.++|..+++|++..+.+.+++++..+.
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 67999999999999886666666666655544
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.04 E-value=3.1e-07 Score=92.25 Aligned_cols=96 Identities=16% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCCeEeeCcCChh---hhcCCCCcccccc---ccc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLT---HCG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+++.+.+++|+. .++..+++ +|. +-| -.+++||+++|+|+|+.... .....+ +.-+.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCCC-
Confidence 4689999999864 57889998 664 223 35899999999999986543 344455 465667776544
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGE 456 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~ 456 (484)
+.+++.++|.++++|++..+.+++++++..+
T Consensus 354 --------------d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 354 --------------DPADWADALARLLDDPRTRIRMGAAAVEHAA 384 (405)
T ss_pred --------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 7899999999999988666677777666543
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.03 E-value=8.7e-07 Score=86.93 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred CCCeEeeCcCChh---hhcCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+|+.+.+++++. .++..+++ +|.. |.-+++.||+++|+|+|+-+.. .....+ +..+.|...+..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~~~- 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVPPG- 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEECCC-
Confidence 5789999999864 56788888 6632 4567899999999999986543 344556 466667776544
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCCh
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGE 442 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 442 (484)
+.+++.++|.+++++++
T Consensus 330 --------------~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 330 --------------DPEALAEAILRLLADPW 346 (377)
T ss_pred --------------CHHHHHHHHHHHhcCcH
Confidence 89999999999999874
No 65
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.99 E-value=8.1e-08 Score=92.70 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=86.3
Q ss_pred cEEEEecCCCccCCHHHHHHHHHHHHhCC---CCEEEEEeCCCCCCCchhhhhhhHHHHHhcC-CCeEeeCcCChhhhcC
Q 011490 280 SAVYVCLGSLCDSSTRQLIELGLGLEATK---KPFIWVIRPGDQAKGLEDWLLAEKFEERIEG-RGLLIRGWAPQVVILS 355 (484)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~---~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~-~nv~~~~~~pq~~ll~ 355 (484)
++|.+--||..+--...+..++++.+... ..+++. +... . +.+.+.... ..+.+.+ .-.+++.
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~-~a~~---------~-~~i~~~~~~~~~~~~~~--~~~~~m~ 234 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVP-SFFK---------G-KDLKEIYGDISEFEISY--DTHKALL 234 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEe-CCCc---------H-HHHHHHHhcCCCcEEec--cHHHHHH
Confidence 58999999987633344454455554332 223332 2221 1 112121111 2222322 3356889
Q ss_pred CCCccccccccchhhHHHHHHcCCCEeccccc--cchhhHHHHHHH---HhcceeEecc---CCCCCCcccccCCCccCH
Q 011490 356 HPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF--ADQFCNEKLVVQ---VLRIGVTIGA---ERPPSLADEERNGVPVKK 427 (484)
Q Consensus 356 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~~~e---~~G~g~~l~~---~~~~~~~~~~~~~~~~~~ 427 (484)
.+++ +|+-.|..|+ |++.+|+|||+ +.- .-|..||+++ . ..|+.-.+-. ++...++-. +...|+
T Consensus 235 ~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEll---Q~~~t~ 306 (347)
T PRK14089 235 EAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELL---QEFVTV 306 (347)
T ss_pred hhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhh---cccCCH
Confidence 9999 9999999999 99999999999 443 3678899998 5 4454433311 000000000 125899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 428 EDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 428 ~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
+.|.+++... ..+.+++...++++.+
T Consensus 307 ~~la~~i~~~-----~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 307 ENLLKAYKEM-----DREKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 9999999761 1224555555554443
No 66
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.98 E-value=5.9e-07 Score=88.34 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=67.3
Q ss_pred CCCeEeeCc-CCh---hhhcCCCCccccccc------cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEec
Q 011490 339 GRGLLIRGW-APQ---VVILSHPAIGGFLTH------CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 408 (484)
Q Consensus 339 ~~nv~~~~~-~pq---~~ll~~~~~~~~I~H------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~ 408 (484)
..++.+.+. +|+ ..++..+++ +|.- |..++++||+++|+|+|+.+..+ ...+ +..+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 467777654 885 458888888 6632 33468899999999999987654 2334 3556777765
Q ss_pred cCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 409 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
.. +.+++.+++.++++|++..+++++++++..+.
T Consensus 318 ~~---------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 PG---------------DPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred CC---------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 44 68999999999999875555555555554443
No 67
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.98 E-value=8.7e-08 Score=94.80 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=81.3
Q ss_pred cEEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCCchhhhhhhHHHHHh-cCCCeEeeCcCCh---
Q 011490 280 SAVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAKGLEDWLLAEKFEERI-EGRGLLIRGWAPQ--- 350 (484)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~nv~~~~~~pq--- 350 (484)
.+|+++.+-.... .+.+..+++++... +.++++...++.. .-..+.+.. ..+++.+.+.+++
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHHH
Confidence 4666655432221 24466677777653 4566665443321 111122222 2357888877664
Q ss_pred hhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHH
Q 011490 351 VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 430 (484)
Q Consensus 351 ~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 430 (484)
..++..+++ +|+..|. .+.||+++|+|+|+++-.++++. +. ..|.+..+ . .++++|
T Consensus 269 ~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv--~--------------~d~~~i 324 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLV--G--------------TDKENI 324 (365)
T ss_pred HHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-hcCceEEe--C--------------CCHHHH
Confidence 456778888 9997764 47999999999999976555552 22 35666554 2 378999
Q ss_pred HHHHHHHhcCC
Q 011490 431 KKAINMLMDEG 441 (484)
Q Consensus 431 ~~ai~~vl~~~ 441 (484)
.+++.++++|+
T Consensus 325 ~~ai~~ll~~~ 335 (365)
T TIGR00236 325 TKAAKRLLTDP 335 (365)
T ss_pred HHHHHHHHhCh
Confidence 99999999887
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.97 E-value=8e-07 Score=87.32 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=89.7
Q ss_pred cEEEEecCCCccC-CHHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCCh-hhhcC
Q 011490 280 SAVYVCLGSLCDS-STRQLIELGLGLEAT--KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQ-VVILS 355 (484)
Q Consensus 280 ~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq-~~ll~ 355 (484)
..+++..|+.... ..+.+.+++..+... +.+++++ |.+.......+. +-.........+++.+.+|.+. ..++.
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~iv-G~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIV-GDAQGRRFYYAE-LLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEE-ECCcccchHHHH-HHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 3566777776542 234455555555543 3444444 433221111110 1001111112467888888653 55888
Q ss_pred CCCcccccccc----c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHH
Q 011490 356 HPAIGGFLTHC----G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 430 (484)
Q Consensus 356 ~~~~~~~I~Hg----G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 430 (484)
.+++ +|+-. | -++++||+++|+|+|+.... .....+ +.-+.|..++.. +.+++
T Consensus 263 ~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~---------------~~~~l 320 (355)
T cd03819 263 LADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLVPPG---------------DAEAL 320 (355)
T ss_pred hCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEeCCC---------------CHHHH
Confidence 8998 55322 3 35999999999999987533 344455 355578777544 88999
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHHHH
Q 011490 431 KKAINMLM-DEGEERDERRRRAREYGET 457 (484)
Q Consensus 431 ~~ai~~vl-~~~~~~~~~r~~a~~l~~~ 457 (484)
.++|..++ .|+++.++++++|++..+.
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 321 AQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 99996554 4676666777777666654
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=8.7e-07 Score=86.96 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=68.1
Q ss_pred CCCeEeeCcCChh---hhcCCCCccccccc----------cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhccee
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTH----------CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGV 405 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 405 (484)
.+|+.+.+++|+. .++..+++ +|.- |.-++++||+++|+|+|+.+..+ ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 5789999999854 46778888 6652 33468999999999999876532 23344 3544777
Q ss_pred EeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 406 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
..+.. +.+++.++|..+++|++..+.+++++++..
T Consensus 308 ~~~~~---------------~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 308 LVPPG---------------DPEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred EeCCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 77543 889999999999998865555555555443
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.94 E-value=6.3e-07 Score=88.35 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCeEeeCcCC-hh---hhcCCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC
Q 011490 339 GRGLLIRGWAP-QV---VILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 339 ~~nv~~~~~~p-q~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
..++...+|++ +. .++..+++ +|.... .+++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 45788889998 43 46888888 777533 47999999999999986543 333344 24446666653
Q ss_pred CCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 411 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
.+.+++.+++.++++|++..+.+.+++++..
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3789999999999998854555555555443
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.91 E-value=3.4e-06 Score=82.83 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=67.3
Q ss_pred CCCeEeeCcCChhh---hcCCCCcccccccc---c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+++.+.+|+++.+ ++..+++ +|.-. | -+++.||+++|+|+|+.+. ......+ +. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--
Confidence 57899999999544 5788888 65432 2 4689999999999999754 3455555 35 77766643
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 --------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34999999999999886666666666665
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.89 E-value=5.3e-07 Score=87.65 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=82.0
Q ss_pred cEEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCCh-hhh
Q 011490 280 SAVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQ-VVI 353 (484)
Q Consensus 280 ~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq-~~l 353 (484)
+.+++..|+... .+....++++++.. +.++++. |.+..... +-..........++.+.++.+. ..+
T Consensus 189 ~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (353)
T cd03811 189 GPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPLREE-----LEALAKELGLADRVHFLGFQSNPYPY 260 (353)
T ss_pred ceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCccHHH-----HHHHHHhcCCCccEEEecccCCHHHH
Confidence 367777787663 23344445555432 3444444 33321111 1111111112467888888774 468
Q ss_pred cCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHH
Q 011490 354 LSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKED 429 (484)
Q Consensus 354 l~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
+..+++ +|.- |.-+++.||+++|+|+|+.... .....+ +..+.|...+.. +.+.
T Consensus 261 ~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~---------------~~~~ 318 (353)
T cd03811 261 LKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG---------------DEAA 318 (353)
T ss_pred HHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---------------CHHH
Confidence 888888 6643 3346899999999999986443 555666 577788877654 6666
Q ss_pred H---HHHHHHHhcCChhHHHHHH
Q 011490 430 V---KKAINMLMDEGEERDERRR 449 (484)
Q Consensus 430 l---~~ai~~vl~~~~~~~~~r~ 449 (484)
+ .+++..++++++..+.+++
T Consensus 319 ~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 319 LAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHHHHHhccCChHHHHHHHH
Confidence 6 6666666776644444444
No 73
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.87 E-value=1.2e-06 Score=88.85 Aligned_cols=275 Identities=12% Similarity=0.007 Sum_probs=146.2
Q ss_pred HchHHHHHHHHhcCCCCeEEE-ecC--CCcchHHHHHHcCC--CcEEEecchHHHHHHHHhhhhcccCCCCCCCCccccc
Q 011490 104 MLRLPLETLFKEIQPKPSCLI-SDV--CLPWTVSSACKFNV--PRIVFHGFSCFCLLCLHSLSVSKAHESVSSDSEYFLV 178 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI-~D~--~~~~a~~~A~~lgI--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (484)
...+.+.+.+++ .+||++| .|. +..-.+-.+++.|+ |++.+.+.....|
T Consensus 297 ~~~~~l~~~i~~--~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAW------------------------ 350 (608)
T PRK01021 297 YRYRKLYKTILK--TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAW------------------------ 350 (608)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceee------------------------
Confidence 344555566666 7999887 587 45556677888996 9888644332221
Q ss_pred CCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC-cccCCCcccchhhc
Q 011490 179 PGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG-PVSLCNKEDIDKLE 257 (484)
Q Consensus 179 Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~ 257 (484)
+..+ .+.+. +..+. +-+...+|.+++. ..+-++.||| |+........
T Consensus 351 ---------R~~R----------ikki~---k~vD~--ll~IfPFE~~~y~----~~gv~v~yVGHPL~d~i~~~~---- 398 (608)
T PRK01021 351 ---------RPKR----------KTILE---KYLDL--LLLILPFEQNLFK----DSPLRTVYLGHPLVETISSFS---- 398 (608)
T ss_pred ---------Ccch----------HHHHH---HHhhh--heecCccCHHHHH----hcCCCeEEECCcHHhhcccCC----
Confidence 1111 11111 11111 1234456665543 2467899999 7654321100
Q ss_pred cCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHH--hC--CCCEEEEEeCCCCCCCchhhhhhhHH
Q 011490 258 RGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLE--AT--KKPFIWVIRPGDQAKGLEDWLLAEKF 333 (484)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~l~~~~ 333 (484)
+..+..+.+.-.+++++|-+--||..+-=...+..++++.+ .. +.++++...+.. ..+.+
T Consensus 399 -------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~~~~i 462 (608)
T PRK01021 399 -------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------YDHLI 462 (608)
T ss_pred -------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------hHHHH
Confidence 12223333433445568999999976532344455666665 32 456666443322 11222
Q ss_pred HHHhcCCC---eEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEecccc-ccchhhHHHHHHHHh--c-cee-
Q 011490 334 EERIEGRG---LLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF-FADQFCNEKLVVQVL--R-IGV- 405 (484)
Q Consensus 334 ~~~~~~~n---v~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~~~~e~~--G-~g~- 405 (484)
.+.....+ +.+..--...+++..+++ .+.-+|- .++|+...|+|||++=- ..=-...++++. +. . +|+
T Consensus 463 ~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLp 538 (608)
T PRK01021 463 LEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLP 538 (608)
T ss_pred HHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehh
Confidence 22222212 122210012578889998 7777774 56899999999999621 112234566664 31 0 110
Q ss_pred EeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011490 406 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 458 (484)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~ 458 (484)
.+-.++...++=-. ++.+.+++.|.+++ ++|.|++.++++++..+++.+.+
T Consensus 539 NIIagr~VvPEllq-gQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 539 NIILGSTIFPEFIG-GKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHhcCCCcchhhcC-CcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 00001111111010 01268999999997 88888877777777777777665
No 74
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.87 E-value=2.2e-07 Score=91.88 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=84.7
Q ss_pred CcEEEEecCCCccC-CHHHHHHHHHHHHhCCC-CEEEEEeCCCC-CCCchhhhhhhHHHHHhc--CCCeEeeCcCChh--
Q 011490 279 GSAVYVCLGSLCDS-STRQLIELGLGLEATKK-PFIWVIRPGDQ-AKGLEDWLLAEKFEERIE--GRGLLIRGWAPQV-- 351 (484)
Q Consensus 279 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~nv~~~~~~pq~-- 351 (484)
++.|++++|..... ..+.+..++++++.... ++.+...++.. ... +-+.. .... ..++.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~-----l~~~~-~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPR-----IREAG-LEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHH-----HHHHH-HhhccCCCCEEEECCcCHHHH
Confidence 45788888876653 35667778888876533 24444433221 011 21111 1111 4678777766543
Q ss_pred -hhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHH
Q 011490 352 -VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 430 (484)
Q Consensus 352 -~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 430 (484)
.++..+++ +|+..| |.+.||+++|+|+|+++.. |. +..+. +.|++..+ . -+.++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~--~--------------~~~~~i 327 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLV--G--------------TDPEAI 327 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEec--C--------------CCHHHH
Confidence 46778888 999999 7788999999999998643 22 33342 55666544 2 258899
Q ss_pred HHHHHHHhcCC
Q 011490 431 KKAINMLMDEG 441 (484)
Q Consensus 431 ~~ai~~vl~~~ 441 (484)
.++|.++++|+
T Consensus 328 ~~~i~~ll~~~ 338 (363)
T cd03786 328 LAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHhcCc
Confidence 99999999876
No 75
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.82 E-value=5.5e-06 Score=84.04 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCCeEeeCcCChhhh---cCCC----Ccccccccc---c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEe
Q 011490 339 GRGLLIRGWAPQVVI---LSHP----AIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTI 407 (484)
Q Consensus 339 ~~nv~~~~~~pq~~l---l~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l 407 (484)
.+++.+.+++++.++ +..+ ++ ||... | -.+++||+++|+|+|+.... .+...+ +.-.-|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEe
Confidence 456778788876554 5544 55 77643 3 35899999999999988543 344444 354567777
Q ss_pred ccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011490 408 GAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~ 453 (484)
+.. +++++.++|.++++|++..+.+.+++++
T Consensus 389 ~~~---------------d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 389 DVL---------------DLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred CCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 654 7899999999999988555555555544
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.82 E-value=1.6e-06 Score=85.56 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=87.7
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCC--CCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCCh--h---hh
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATK--KPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQ--V---VI 353 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq--~---~l 353 (484)
.+++..|.......+.+..+++++.... .+++ .+|.+... ++ +-....+.....++.+.+|+++ . ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~~~---~~--l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGSDF---EK--CKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCccH---HH--HHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 4556667654323344666777776653 3444 44433221 11 2111111112568999999853 2 23
Q ss_pred cCCCCccccccc----cchhhHHHHHHcCCCEeccc-cccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHH
Q 011490 354 LSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWP-FFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKE 428 (484)
Q Consensus 354 l~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~ 428 (484)
+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~---------------~d~~ 312 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP---------------GNID 312 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---------------CCHH
Confidence 445676 6643 22469999999999999875 322 22344 45556776654 4899
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHHHH
Q 011490 429 DVKKAINMLMDEGE--ERDERRRRAREYGET 457 (484)
Q Consensus 429 ~l~~ai~~vl~~~~--~~~~~r~~a~~l~~~ 457 (484)
++.++|.++++|++ ..+..+++++++...
T Consensus 313 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 313 EFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999999885 244455555555443
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.79 E-value=2.5e-05 Score=76.32 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=64.1
Q ss_pred CCCeEeeCcCC-hhhhcCCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCC
Q 011490 339 GRGLLIRGWAP-QVVILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 413 (484)
Q Consensus 339 ~~nv~~~~~~p-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~ 413 (484)
..++.+.+... ...++..+++ +|.... -+++.||+++|+|+|+.. ...+...+ +. .|..++..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~~~--- 317 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVPPG--- 317 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeCCC---
Confidence 34666666554 3568888998 776554 379999999999999854 44455555 34 56666544
Q ss_pred CCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 414 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 318 ------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (365)
T cd03807 318 ------------DPEALAEAIEALLADPALRQALGEAARER 346 (365)
T ss_pred ------------CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 68999999999999875444444444433
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.79 E-value=4e-06 Score=83.95 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=67.2
Q ss_pred cCCCeEeeCcCCh-hhhcCCCCccccc--cc--cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 338 EGRGLLIRGWAPQ-VVILSHPAIGGFL--TH--CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 338 ~~~nv~~~~~~pq-~~ll~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
..+++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+. .. +..|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C-
Confidence 3578999999985 457888888 66 32 354 3699999999999998764322 11 2345676664 3
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
+++++.++|.++++|++..+.+.+++++..
T Consensus 348 --------------~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 --------------DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred --------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 789999999999998865566666665543
No 79
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.73 E-value=1.1e-05 Score=78.44 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=77.7
Q ss_pred EEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHh-cCCCeEeeCcCChh---hhcCCC
Q 011490 282 VYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERI-EGRGLLIRGWAPQV---VILSHP 357 (484)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~nv~~~~~~pq~---~ll~~~ 357 (484)
+.+..|... ..+....+++++++.+.++++...+.. ... +-....... ..+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~-~~~-----~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD-PDY-----FYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC-HHH-----HHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 344556663 234456677888888888776544322 110 111111111 25789999999975 468888
Q ss_pred Ccccccc----ccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 358 AIGGFLT----HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 358 ~~~~~I~----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
++ +|. +-|. .++.||+++|+|+|+.... .+...+ +.-..|... . ..+++.+
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~--~---------------~~~~l~~ 300 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLV--D---------------SVEELAA 300 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEe--C---------------CHHHHHH
Confidence 88 553 2343 4799999999999987653 333344 233345544 2 2889999
Q ss_pred HHHHHhcC
Q 011490 433 AINMLMDE 440 (484)
Q Consensus 433 ai~~vl~~ 440 (484)
++.+++++
T Consensus 301 ~l~~l~~~ 308 (335)
T cd03802 301 AVARADRL 308 (335)
T ss_pred HHHHHhcc
Confidence 99988753
No 80
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.73 E-value=6e-06 Score=81.58 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCeEeeCcCChhh---hcCCCCcccccccc----------chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhccee
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTHC----------GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGV 405 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~Hg----------G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 405 (484)
..++.+.+++|+.+ ++..+++ +|... --+++.||+++|+|+|+-+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 56899999998644 5888888 66422 246899999999999987654 355556 4667787
Q ss_pred EeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 406 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
.++.. +.+++.++|.++++|++..+.++.++++..
T Consensus 317 ~~~~~---------------d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 317 LVPEG---------------DVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred EECCC---------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 77644 779999999999998755555555555443
No 81
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.73 E-value=2.3e-05 Score=78.48 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCeEeeCcCChh---hhcCCCCccccccc---cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTH---CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
.+++.+.+|+|+. .++..+++ +|.- -|. .++.||+++|+|+|+.+..+ ....+ +. |.+ .+. .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~~-~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LLA-E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-eec-C-
Confidence 4568889999854 47778888 6642 244 39999999999999987653 22333 23 333 222 2
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCCh
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGE 442 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 442 (484)
.+.+++.+++.+++++..
T Consensus 318 -------------~~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 318 -------------PDVESIVRKLEEAISILR 335 (398)
T ss_pred -------------CCHHHHHHHHHHHHhChh
Confidence 378999999999998653
No 82
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.69 E-value=2.9e-05 Score=83.98 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=67.1
Q ss_pred CCCeEeeCcCChhh---hcCCC----Cccccccc---cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEe
Q 011490 339 GRGLLIRGWAPQVV---ILSHP----AIGGFLTH---CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTI 407 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~----~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l 407 (484)
..+|.+.+++++.+ ++..+ ++ ||.- =|. .++.||+++|+|+|+....+ ....+ +.-.-|+.+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEE
Confidence 45677888888654 45444 35 7764 233 58899999999999986543 23333 344457777
Q ss_pred ccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011490 408 GAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGE 456 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~ 456 (484)
+.. +.++|+++|.++++|++..+.+.+++++..+
T Consensus 620 dP~---------------D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 620 DPH---------------DQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred CCC---------------CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 654 7899999999999998766777777666544
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.69 E-value=1.5e-05 Score=79.01 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCeEeeCcCC-hhhhcCCCCcccccc--c--cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCC
Q 011490 340 RGLLIRGWAP-QVVILSHPAIGGFLT--H--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPS 414 (484)
Q Consensus 340 ~nv~~~~~~p-q~~ll~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~ 414 (484)
.++.+.++.. -..++..+++ +|. + |--++++||+++|+|+|+.... .+...+ +.-..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~~---- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPPG---- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCCC----
Confidence 4566655544 3568888998 663 2 3356899999999999997653 344455 354567777544
Q ss_pred CcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011490 415 LADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 324 -----------d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 324 -----------DAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred -----------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78999999999998875444555555443
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.69 E-value=2e-05 Score=78.51 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=88.1
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCchhhhhhhHHHHHh---c--CCCeEe-eCcCCh--
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT--KKPFIWVIRPGDQAKGLEDWLLAEKFEERI---E--GRGLLI-RGWAPQ-- 350 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~---~--~~nv~~-~~~~pq-- 350 (484)
.+++..|.... .+.+..++++++.. +.++++..++..... +-+.+.... . ..++.. .+++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 45556676553 24456666777654 456665554432111 111121111 1 233553 467775
Q ss_pred -hhhcCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCcc
Q 011490 351 -VVILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPV 425 (484)
Q Consensus 351 -~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~ 425 (484)
..++..+++ +|.- +.-.+++||+++|+|+|+... ..+...+ +.-+.|..++..+. +..-
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~---------~~~~ 337 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS---------DADG 337 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC---------cccc
Confidence 346888888 7753 223577999999999998654 3455556 46567888765510 0011
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
..+++.++|.++++|++..+.+.+++++..
T Consensus 338 ~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 338 FQAELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 238999999999998866666666665543
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.68 E-value=2.2e-05 Score=77.26 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=78.5
Q ss_pred EEecCCCccCCHHHHHHHHHHHHhCC--CCEEEEEeCCCCCCCchhhhhhhHHH-HHhcCCCeEeeCcCChhh---hcCC
Q 011490 283 YVCLGSLCDSSTRQLIELGLGLEATK--KPFIWVIRPGDQAKGLEDWLLAEKFE-ERIEGRGLLIRGWAPQVV---ILSH 356 (484)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~nv~~~~~~pq~~---ll~~ 356 (484)
++..|+... .+.+..+++++.... .+++++. ....... +-..+. .....++|.+.+++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG-~~~~~~~-----~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVG-NADHNTP-----YGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEc-CCCCcch-----HHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 234555667776553 5554444 3322111 212222 122357899999998754 5666
Q ss_pred CCccccccccch-----hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 357 PAIGGFLTHCGW-----NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 357 ~~~~~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
+++ ++.+.-. +++.||+++|+|+|+....+ +...+ +. -|...+.. + .+.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~---------------~--~l~ 321 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG---------------D--DLA 321 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc---------------h--HHH
Confidence 777 6554333 47899999999999876543 22223 23 23333322 1 299
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 011490 432 KAINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 432 ~ai~~vl~~~~~~~~~r~~a~~ 453 (484)
++|.++++|++..+.+.+++++
T Consensus 322 ~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 322 SLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred HHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999987544444444443
No 86
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.68 E-value=5.7e-06 Score=80.45 Aligned_cols=277 Identities=19% Similarity=0.162 Sum_probs=144.3
Q ss_pred HchHHHHHHHHhcCCCCeEEE-ecC--CCcchHHHHHHcCCC--cEEEecchHHHHHHHHhhhhcccCCCCCCCCccccc
Q 011490 104 MLRLPLETLFKEIQPKPSCLI-SDV--CLPWTVSSACKFNVP--RIVFHGFSCFCLLCLHSLSVSKAHESVSSDSEYFLV 178 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI-~D~--~~~~a~~~A~~lgIP--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (484)
.....+.+.+.+ .+||+|| +|+ |..-.+-.+++.|+| ++.|.+...+.|
T Consensus 69 ~~~~~~~~~~~~--~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAW------------------------ 122 (373)
T PF02684_consen 69 RLFRKLVERIKE--EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAW------------------------ 122 (373)
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeee------------------------
Confidence 344555666666 7999877 787 555666778889998 666433222111
Q ss_pred CCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccCCceEEeC-cccCCCcccchhhc
Q 011490 179 PGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARDGKVWCVG-PVSLCNKEDIDKLE 257 (484)
Q Consensus 179 Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~ 257 (484)
+..+ .+.+. +..+. +-....+|++++. ..+-++.||| |+........
T Consensus 123 ---------r~~R----------~~~i~---~~~D~--ll~ifPFE~~~y~----~~g~~~~~VGHPl~d~~~~~~---- 170 (373)
T PF02684_consen 123 ---------RPGR----------AKKIK---KYVDH--LLVIFPFEPEFYK----KHGVPVTYVGHPLLDEVKPEP---- 170 (373)
T ss_pred ---------CccH----------HHHHH---HHHhh--eeECCcccHHHHh----ccCCCeEEECCcchhhhccCC----
Confidence 1100 11111 11222 2233445655432 3356899999 7654322110
Q ss_pred cCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHh-----CCCCEEEEEeCCCCCCCchhhhhhhH
Q 011490 258 RGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEA-----TKKPFIWVIRPGDQAKGLEDWLLAEK 332 (484)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~ 332 (484)
.+....+.+ -.+++++|-+--||...-=...+..++++.+. .+.++++...+.. ..+.
T Consensus 171 -------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~---------~~~~ 233 (373)
T PF02684_consen 171 -------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV---------HEEL 233 (373)
T ss_pred -------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH---------HHHH
Confidence 012222232 22345689999999765222333444555442 3567776665442 1111
Q ss_pred HHHHh--cCCCeEeeC-cCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccc-cchhhHHHHHHHHhcceeEe-
Q 011490 333 FEERI--EGRGLLIRG-WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF-ADQFCNEKLVVQVLRIGVTI- 407 (484)
Q Consensus 333 ~~~~~--~~~nv~~~~-~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~~~~e~~G~g~~l- 407 (484)
+.... ...++.+.. .-.-.+++..+++ .+.-.| ..|+|+..+|+|||++=-. .=....|+++. +... +.+
T Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~ 308 (373)
T PF02684_consen 234 IEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKY-ISLP 308 (373)
T ss_pred HHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCE-eech
Confidence 11111 122222222 2234567888888 666666 3678999999999987321 12344666664 3332 111
Q ss_pred ----ccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChH
Q 011490 408 ----GAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSY 469 (484)
Q Consensus 408 ----~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~ 469 (484)
+..--++.- +...+++.|.+++..+++|++. ++..+...+.+++.+..|.++.
T Consensus 309 Niia~~~v~PEli-----Q~~~~~~~i~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 309 NIIAGREVVPELI-----QEDATPENIAAELLELLENPEK----RKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred hhhcCCCcchhhh-----cccCCHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHhhhhccCCH
Confidence 111001111 2368999999999999998843 4444444444444444455443
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=0.0001 Score=71.11 Aligned_cols=324 Identities=15% Similarity=0.214 Sum_probs=180.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEe-CCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQH--GALVTIVT-TPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~-~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
.+.+-.-+.|-++-.++|.++|+++ ++.|++-+ ++...+.++... +..+....+|.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~--------------- 109 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPL--------------- 109 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCc---------------
Confidence 5555566889999999999999999 88888877 455555555542 22244444441
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC-CCcc-hHHHHHHcCCCcEEEecchHHHHHHHHhhhhccc
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV-CLPW-TVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~~-a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (484)
+. ...++.+++. ++||++|.-- -+|. ...-+++.|||.+.+..=
T Consensus 110 -----D~-----------~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------- 155 (419)
T COG1519 110 -----DL-----------PIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------- 155 (419)
T ss_pred -----Cc-----------hHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------
Confidence 11 1123566777 8999877544 4432 335677899999985220
Q ss_pred CCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHhccC-CceEEeCc
Q 011490 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKNARD-GKVWCVGP 244 (484)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~vGp 244 (484)
+..+....+-+...+.+.+. .+.+.++..+-.+-+ .+.. +| +++.-.|.
T Consensus 156 ---------------------LS~rS~~~y~k~~~~~~~~~---~~i~li~aQse~D~~-----Rf~~-LGa~~v~v~GN 205 (419)
T COG1519 156 ---------------------LSDRSFARYAKLKFLARLLF---KNIDLILAQSEEDAQ-----RFRS-LGAKPVVVTGN 205 (419)
T ss_pred ---------------------echhhhHHHHHHHHHHHHHH---HhcceeeecCHHHHH-----HHHh-cCCcceEEecc
Confidence 11111121111223333332 344444444422211 1111 22 34566666
Q ss_pred ccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHHHHHHHHHHhCC--CCEEEEEeCCCCCC
Q 011490 245 VSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQLIELGLGLEATK--KPFIWVIRPGDQAK 322 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~ 322 (484)
+=.......... ..-..+...++.. + .+.|..+|.. ...+..-....++.+.. ...||+ ..+
T Consensus 206 lKfd~~~~~~~~-------~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlV-PRH---- 269 (419)
T COG1519 206 LKFDIEPPPQLA-------AELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILV-PRH---- 269 (419)
T ss_pred eeecCCCChhhH-------HHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEe-cCC----
Confidence 522211000000 0001233344332 2 3556666633 23344444555554432 223333 221
Q ss_pred CchhhhhhhHH---HHHhcCC-----------------CeEeeCcCC-hhhhcCCCCc----cccccccchhhHHHHHHc
Q 011490 323 GLEDWLLAEKF---EERIEGR-----------------GLLIRGWAP-QVVILSHPAI----GGFLTHCGWNSVLEAVSN 377 (484)
Q Consensus 323 ~~~~~~l~~~~---~~~~~~~-----------------nv~~~~~~p-q~~ll~~~~~----~~~I~HgG~~s~~eal~~ 377 (484)
|+.| .+..... +|++.+-+- ...++.-+++ +-++-+||+| ..|++++
T Consensus 270 -------pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~ 341 (419)
T COG1519 270 -------PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAF 341 (419)
T ss_pred -------hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHc
Confidence 1111 1111122 334434333 2223333443 2245689988 6799999
Q ss_pred CCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 378 GLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 378 GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
|+|+|.=|+...|.+.++++ +..|.|+.++ +++.|.+++..+++|++.++.|.+++.++-+.
T Consensus 342 ~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~-----------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 342 GTPVIFGPYTFNFSDIAERL-LQAGAGLQVE-----------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred CCCEEeCCccccHHHHHHHH-HhcCCeEEEC-----------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6999999983 37889999999999888888888888888877
Q ss_pred HHHH
Q 011490 458 AKTA 461 (484)
Q Consensus 458 ~~~~ 461 (484)
.+.+
T Consensus 404 ~~ga 407 (419)
T COG1519 404 NRGA 407 (419)
T ss_pred hhHH
Confidence 7644
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.63 E-value=1.2e-05 Score=78.92 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=76.7
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCCh-hhhc
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQ-VVIL 354 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq-~~ll 354 (484)
.+++..|+... .+.+..+++++... +.++++...+.. .+ . +-.........+|+.+.++..+ ..++
T Consensus 189 ~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~---~--~~~~~~~~~~~~~v~~~g~~~~~~~~~ 260 (360)
T cd04951 189 FVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL-RA---T--LERLIKALGLSNRVKLLGLRDDIAAYY 260 (360)
T ss_pred EEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc-HH---H--HHHHHHhcCCCCcEEEecccccHHHHH
Confidence 56777777653 23333444444322 456665543321 11 1 1111111112457888888754 5688
Q ss_pred CCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHH
Q 011490 355 SHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 430 (484)
Q Consensus 355 ~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 430 (484)
..+++ +|.-.. -+++.||+++|+|+|+. |...+...+ +. .|..+.. -+.+++
T Consensus 261 ~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---------------~~~~~~ 316 (360)
T cd04951 261 NAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---------------SDPEAL 316 (360)
T ss_pred Hhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC---------------CCHHHH
Confidence 88888 665432 46899999999999974 445555556 35 4444543 478899
Q ss_pred HHHHHHHhcCC
Q 011490 431 KKAINMLMDEG 441 (484)
Q Consensus 431 ~~ai~~vl~~~ 441 (484)
.+++.++++++
T Consensus 317 ~~~i~~ll~~~ 327 (360)
T cd04951 317 ANKIDEILKMS 327 (360)
T ss_pred HHHHHHHHhCC
Confidence 99999998533
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.63 E-value=8.5e-06 Score=80.09 Aligned_cols=139 Identities=17% Similarity=0.122 Sum_probs=81.5
Q ss_pred EEEEecCCCccC-CHHHHHHHHHHHHhC--CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCCh-hhhcCC
Q 011490 281 AVYVCLGSLCDS-STRQLIELGLGLEAT--KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQ-VVILSH 356 (484)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq-~~ll~~ 356 (484)
.+.+..|+.... ..+.+...+..+.+. +.+++++ |.+..... +-...+......++.+.++..+ ..++..
T Consensus 193 ~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~g~~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 266 (358)
T cd03812 193 FVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLV-GDGELEEE-----IKKKVKELGLEDKVIFLGVRNDVPELLQA 266 (358)
T ss_pred EEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEE-eCCchHHH-----HHHHHHhcCCCCcEEEecccCCHHHHHHh
Confidence 566667776532 233344444444332 3444444 33321111 1111111122467888887544 568888
Q ss_pred CCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 357 PAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 357 ~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
+++ +|+- |--++++||+++|+|+|+....+ ....+ +. +.|..... -+++++++
T Consensus 267 adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---------------~~~~~~a~ 323 (358)
T cd03812 267 MDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---------------ESPEIWAE 323 (358)
T ss_pred cCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC---------------CCHHHHHH
Confidence 888 6654 34578999999999999865543 34445 35 55555432 36899999
Q ss_pred HHHHHhcCChhHHHHH
Q 011490 433 AINMLMDEGEERDERR 448 (484)
Q Consensus 433 ai~~vl~~~~~~~~~r 448 (484)
+|.++++|++..+.++
T Consensus 324 ~i~~l~~~~~~~~~~~ 339 (358)
T cd03812 324 EILKLKSEDRRERSSE 339 (358)
T ss_pred HHHHHHhCcchhhhhh
Confidence 9999999995444443
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.56 E-value=7.4e-06 Score=80.55 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=89.5
Q ss_pred EEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChh---hhcCCCC
Q 011490 282 VYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQV---VILSHPA 358 (484)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~---~ll~~~~ 358 (484)
.++..|++.. .+....++++++..+.+++++..+. ..+.+.. ...+||.+.+++|+. .++..++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRA-KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 3445666553 3446678888888777766554332 1122222 346899999999974 4788888
Q ss_pred cccccc--ccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHH
Q 011490 359 IGGFLT--HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 435 (484)
Q Consensus 359 ~~~~I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 435 (484)
+ +|. .-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++.. +.+++.++|.
T Consensus 264 ~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~---------------~~~~la~~i~ 321 (351)
T cd03804 264 A--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ---------------TVESLAAAVE 321 (351)
T ss_pred E--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC---------------CHHHHHHHHH
Confidence 8 553 3333 35789999999999986533 33345 355678777654 7888999999
Q ss_pred HHhcCC-hhHHHHHHHHH
Q 011490 436 MLMDEG-EERDERRRRAR 452 (484)
Q Consensus 436 ~vl~~~-~~~~~~r~~a~ 452 (484)
.+++|+ ..++.++++++
T Consensus 322 ~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 322 RFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred HHHhCcccCHHHHHHHHH
Confidence 999987 33344444443
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.50 E-value=2.6e-05 Score=76.53 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=65.7
Q ss_pred cCCCeEeeCcCChh---hhcCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC
Q 011490 338 EGRGLLIRGWAPQV---VILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 338 ~~~nv~~~~~~pq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
...++.+.+++|+. .++..+++ +|.. |..+++.||+++|+|+|+....+ ....+ +. .|..++.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--ceeeeCC-
Confidence 46789999999865 46788887 6543 23458999999999999865422 22222 22 2444443
Q ss_pred CCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 411 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
-+.+++.++|.++++|++....+.+++++..+.
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGLARAKR 353 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 378999999999999986666666666544433
No 92
>PLN02949 transferase, transferring glycosyl groups
Probab=98.47 E-value=0.00029 Score=71.56 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=62.5
Q ss_pred CCCeEeeCcCChhh---hcCCCCcccccc---ccchh-hHHHHHHcCCCEeccccccchhhHHHHHHHH-hc-ceeEecc
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLT---HCGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQV-LR-IGVTIGA 409 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~-~G-~g~~l~~ 409 (484)
.++|.+.+++|+.+ +|..+++ +|+ +=|.| ++.||+++|+|.|+....+--... +.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC--
Confidence 56899999998654 6778887 763 23333 799999999999998653310000 1000 01 12111
Q ss_pred CCCCCCcccccCCCccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHH
Q 011490 410 ERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAK 459 (484)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~r~~a~~l~~~~~ 459 (484)
-+.++++++|.+++++ ++.++++.+++++..+++.
T Consensus 407 ---------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS 442 (463)
T PLN02949 407 ---------------TTVEEYADAILEVLRMRETERLEIAAAARKRANRFS 442 (463)
T ss_pred ---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 2689999999999984 4555567777766554433
No 93
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.46 E-value=0.0002 Score=71.07 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCCeEeeCcC--Ch---hhhcCCCCcccccccc---c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEecc
Q 011490 339 GRGLLIRGWA--PQ---VVILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGA 409 (484)
Q Consensus 339 ~~nv~~~~~~--pq---~~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~ 409 (484)
.+++.+..+. ++ ..+++.+++ ++... | -.++.||+++|+|+|+....+ ....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC-
Confidence 4567777776 43 247788888 77543 2 348999999999999875432 33345 3545565442
Q ss_pred CCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 410 ERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
+.+++..+|.++++|++..+.+.+++++.... .-+-...++++++.+.
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~-------~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHVRE-------NFLITRHLKDYLYLIS 370 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHH
Confidence 34567789999998875555666665554322 2333344555555443
No 94
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=4.3e-05 Score=72.83 Aligned_cols=225 Identities=17% Similarity=0.125 Sum_probs=117.7
Q ss_pred cccccCHHHHHHHHhccCCceEEeC-cccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCCHHHH
Q 011490 219 SFEEMEPAYVEEYKNARDGKVWCVG-PVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSSTRQL 297 (484)
Q Consensus 219 s~~~l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~~~~~ 297 (484)
.+..+|+.+++.. +-+..||| |+....+... +++.+.+-+....+++++.+--||..+-=...+
T Consensus 142 ailPFE~~~y~k~----g~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 142 AILPFEPAFYDKF----GLPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred eecCCCHHHHHhc----CCCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 3445676654422 33489999 6644322111 133344445444556699999999765222223
Q ss_pred HHHHHHHHh-----CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCe-EeeCcC-C-h-hhhcCCCCccccccccch
Q 011490 298 IELGLGLEA-----TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGL-LIRGWA-P-Q-VVILSHPAIGGFLTHCGW 368 (484)
Q Consensus 298 ~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv-~~~~~~-p-q-~~ll~~~~~~~~I~HgG~ 368 (484)
..+.++.+. .+.+|++-+.+... +.........+. ....++ + + ..++..+++ .+.-+|-
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT 274 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNAKY----------RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT 274 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcHHH----------HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH
Confidence 334444443 25788877655421 111111111111 111222 2 2 236777887 7777774
Q ss_pred hhHHHHHHcCCCEeccccc-cchhhHHHHHHHHhcceeEec--cCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHH
Q 011490 369 NSVLEAVSNGLPMVTWPFF-ADQFCNEKLVVQVLRIGVTIG--AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERD 445 (484)
Q Consensus 369 ~s~~eal~~GvP~l~~P~~-~DQ~~na~~~~e~~G~g~~l~--~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~ 445 (484)
-++|+..+|+|||+.=-. .=-...+++.. +....--.+ .++.+. -+--+...+++.|.+++..++.|++..+
T Consensus 275 -~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~iv---PEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 275 -ATLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIV---PELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred -HHHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccc---hHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 467999999999986110 01123344443 322111000 000000 0000125889999999999999986666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 011490 446 ERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDI 479 (484)
Q Consensus 446 ~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 479 (484)
.+++...++++.++ ++++++.+.+-+++.+
T Consensus 350 ~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 350 ALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 77777777776655 3446566665555443
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=98.45 E-value=0.00075 Score=66.88 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=53.0
Q ss_pred cCCCeEeeC-cCChhh---hcCCCCcccccc-c-----cc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeE
Q 011490 338 EGRGLLIRG-WAPQVV---ILSHPAIGGFLT-H-----CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 406 (484)
Q Consensus 338 ~~~nv~~~~-~~pq~~---ll~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~ 406 (484)
.-+|+.+.. |+|+.+ +|..+++ +|. + -| -+++.||+++|+|+|+... ..+...+ ++-+.|..
T Consensus 284 ~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~l 356 (371)
T PLN02275 284 NLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLL 356 (371)
T ss_pred CCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEE
Confidence 345666655 788755 5889998 763 1 12 2479999999999999753 2355555 46667877
Q ss_pred eccCCCCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 407 IGAERPPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
++ +++++.++|.+++
T Consensus 357 v~-----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 357 FS-----------------SSSELADQLLELL 371 (371)
T ss_pred EC-----------------CHHHHHHHHHHhC
Confidence 62 3678888887764
No 96
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.43 E-value=6.1e-05 Score=74.19 Aligned_cols=319 Identities=16% Similarity=0.132 Sum_probs=162.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC-CCeEEEEeCCC-chhh----hhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPM-NAAR----FQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r-Gh~V~~~~~~~-~~~~----v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
||++++ +++-.+.=+-+|.++|++. +.++.++.+.. ..+. ...... . +|... +. ..-..
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~----~--~~~~~--~~------~~~~~ 66 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK----D--GFDID--EK------IEILL 66 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH----c--CCCCC--Cc------ccccc
Confidence 666655 8888999999999999985 77877776542 2221 111110 0 12110 00 00000
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--C-CcchHHHHHHcCCCcEEEecchHHHHHHHHhh
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV--C-LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSL 160 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~-~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 160 (484)
... . ..............+.+++++ .+||+||+-. . +.+++.+|.++|||++-+...-
T Consensus 67 ~~~---~----~~~~~~~~~~~~~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~---------- 127 (365)
T TIGR03568 67 DSD---S----NAGMAKSMGLTIIGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE---------- 127 (365)
T ss_pred CCC---C----CCCHHHHHHHHHHHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc----------
Confidence 000 0 011223333455677888888 8999999766 2 2478899999999999542210
Q ss_pred hhcccCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHH-Hhcc-CCc
Q 011490 161 SVSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEY-KNAR-DGK 238 (484)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~-~~~~-~~~ 238 (484)
...+.+. +..+.+...+ +...+..+ ....+.. .... +.+
T Consensus 128 ----------------rs~~~~e----------------E~~r~~i~~l--a~l~f~~t-----~~~~~~L~~eg~~~~~ 168 (365)
T TIGR03568 128 ----------------VTEGAID----------------ESIRHAITKL--SHLHFVAT-----EEYRQRVIQMGEDPDR 168 (365)
T ss_pred ----------------cCCCCch----------------HHHHHHHHHH--HhhccCCC-----HHHHHHHHHcCCCCCc
Confidence 0011111 0111111111 11111111 1111111 1111 246
Q ss_pred eEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCc--c-CCHHHHHHHHHHHHhCCCCEEEEE
Q 011490 239 VWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLC--D-SSTRQLIELGLGLEATKKPFIWVI 315 (484)
Q Consensus 239 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~ 315 (484)
++.+|....+.-.... ....+++.+.+.-.++++.|+|++=... . ...+.+..+++++...+.++++..
T Consensus 169 i~~tG~~~iD~l~~~~--------~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~ 240 (365)
T TIGR03568 169 VFNVGSPGLDNILSLD--------LLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTY 240 (365)
T ss_pred EEEECCcHHHHHHhhh--------ccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEE
Confidence 7777754332110000 0001222222222223357778775433 3 335778899999988776666655
Q ss_pred eCCCCCCCchhhhhhhHHHHHhc-CCCeEeeCcCC---hhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchh
Q 011490 316 RPGDQAKGLEDWLLAEKFEERIE-GRGLLIRGWAP---QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 391 (484)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~-~~nv~~~~~~p---q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 391 (484)
..... ... . +-+.+..... .+|+.+.+-++ ...++.++++ +|+.++.+- .||.+.|+|.|.+- +.+
T Consensus 241 P~~~p-~~~-~--i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~ 310 (365)
T TIGR03568 241 PNADA-GSR-I--INEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ 310 (365)
T ss_pred eCCCC-Cch-H--HHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc
Confidence 33211 100 0 1122222222 46888887665 4568889999 998885554 99999999999773 311
Q ss_pred hHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhc
Q 011490 392 CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 439 (484)
Q Consensus 392 ~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 439 (484)
.-+ +.|..+.+- . .++++|.+++.++++
T Consensus 311 ---e~~--~~g~nvl~v-g--------------~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 311 ---KGR--LRADSVIDV-D--------------PDKEEIVKAIEKLLD 338 (365)
T ss_pred ---hhh--hhcCeEEEe-C--------------CCHHHHHHHHHHHhC
Confidence 111 223332211 2 578999999999553
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.37 E-value=0.00018 Score=72.55 Aligned_cols=96 Identities=23% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCCeEeeCcCChh---hhcCCCCcccccccc---ch-hhHHHHHHcCCCEeccccccchhhHHHHHHH---HhcceeEec
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTHC---GW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQ---VLRIGVTIG 408 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e---~~G~g~~l~ 408 (484)
.++|.+.+++|+. .+|..+++ +|+-. |. .++.||+++|+|.|+.-..+.- ...+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 4689999999864 47888888 66421 22 4889999999999986533211 1111 2 23355442
Q ss_pred cCCCCCCcccccCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHH
Q 011490 409 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEE-RDERRRRAREYGET 457 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~r~~a~~l~~~ 457 (484)
-+++++.++|.++++++++ .+.+++++++..+.
T Consensus 377 ----------------~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~ 410 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSLSEEERLRIRRAARSSVKR 410 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 2789999999999987642 22334444443333
No 98
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.37 E-value=1.4e-06 Score=70.57 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=80.5
Q ss_pred EEEEecCCCccCC-HHH--HHHHHHHHHhCCC-CEEEEEeCCCCCCCchhhhhhhHHHHHhcCCC--eEeeCcCCh-hhh
Q 011490 281 AVYVCLGSLCDSS-TRQ--LIELGLGLEATKK-PFIWVIRPGDQAKGLEDWLLAEKFEERIEGRG--LLIRGWAPQ-VVI 353 (484)
Q Consensus 281 ~V~vs~GS~~~~~-~~~--~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~n--v~~~~~~pq-~~l 353 (484)
.+||+-||....+ ... -.+....+.+.|+ +.++..|.+... .++..+......+ +...+|-|- .+.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 7999999977411 011 1346677777775 667778776321 2332322222333 445667785 566
Q ss_pred cCCCCccccccccchhhHHHHHHcCCCEecccc----ccchhhHHHHHHHHhcceeEe
Q 011490 354 LSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEKLVVQVLRIGVTI 407 (484)
Q Consensus 354 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~~~e~~G~g~~l 407 (484)
...+++ +|+|+|.||++|.|..|+|.|+++. -..|-..|..++ +.|.=..=
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 777888 9999999999999999999999995 457999999995 77764443
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.0011 Score=70.30 Aligned_cols=97 Identities=27% Similarity=0.294 Sum_probs=65.3
Q ss_pred CCCeEeeCcCCh-hhhcCCCCcccccc---ccc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCC
Q 011490 339 GRGLLIRGWAPQ-VVILSHPAIGGFLT---HCG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 413 (484)
Q Consensus 339 ~~nv~~~~~~pq-~~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~ 413 (484)
.++|.+.+|.++ ..++..+++ +|. +.| -++++||+++|+|+|+.... .....+ +.-.-|..++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 467888899875 458888888 665 445 46889999999999997653 344445 354468888766
Q ss_pred CCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 414 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
..+.+++.+++.+++.+......+++++++..
T Consensus 643 ----------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 ----------TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred ----------CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 46677777777776654322225655554443
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.26 E-value=0.0011 Score=70.54 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCeEeeCcC-Ch---hhhcCC----CCccccccc---cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeE
Q 011490 339 GRGLLIRGWA-PQ---VVILSH----PAIGGFLTH---CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 406 (484)
Q Consensus 339 ~~nv~~~~~~-pq---~~ll~~----~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~ 406 (484)
.++|.+.++. +. ..++.+ +++ ||.- =|. .++.||+++|+|+|+.-.. .....+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEE
Confidence 3567776664 32 234432 234 6643 222 4899999999999986543 345555 35456888
Q ss_pred eccCCCCCCcccccCCCccCHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 011490 407 IGAERPPSLADEERNGVPVKKEDVKKAINMLM----DEGEERDERRRRARE 453 (484)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl----~~~~~~~~~r~~a~~ 453 (484)
++.. ++++++++|.+++ +|++..+.+.+++++
T Consensus 691 Vdp~---------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 691 IDPY---------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8655 7788888888775 577555566555543
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.21 E-value=2.8e-06 Score=82.77 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=127.2
Q ss_pred HHHHHHchHHHHHHHHhcCCCCeEEEecC--C-CcchHHHHHHcCCCcEEEecchHHHHHHHHhhhhcccCCCCCCCCcc
Q 011490 99 FAAIEMLRLPLETLFKEIQPKPSCLISDV--C-LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSDSEY 175 (484)
Q Consensus 99 ~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~-~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (484)
..........+.+++++ .+||+||+-+ . +.+++.+|.+++||++-+...- .. .
T Consensus 49 ~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl-Rs---------------------~ 104 (346)
T PF02350_consen 49 AKSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL-RS---------------------G 104 (346)
T ss_dssp HHHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES---------------------------S
T ss_pred HHHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC-Cc---------------------c
Confidence 34444566777888888 7999988666 2 3577899999999977542210 00 0
Q ss_pred cccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHHHHHh-cc-CCceEEeCcccCCCcccc
Q 011490 176 FLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVEEYKN-AR-DGKVWCVGPVSLCNKEDI 253 (484)
Q Consensus 176 ~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~-~~~~~~vGp~~~~~~~~~ 253 (484)
...-|++ .+..+..... -++..+..+-. +.+...+ .. +.+++.+|....+.-...
T Consensus 105 d~~~g~~----------------de~~R~~i~~--la~lhf~~t~~-----~~~~L~~~G~~~~rI~~vG~~~~D~l~~~ 161 (346)
T PF02350_consen 105 DRTEGMP----------------DEINRHAIDK--LAHLHFAPTEE-----ARERLLQEGEPPERIFVVGNPGIDALLQN 161 (346)
T ss_dssp -TTSSTT----------------HHHHHHHHHH--H-SEEEESSHH-----HHHHHHHTT--GGGEEE---HHHHHHHHH
T ss_pred ccCCCCc----------------hhhhhhhhhh--hhhhhccCCHH-----HHHHHHhcCCCCCeEEEEChHHHHHHHHh
Confidence 0001222 2223333222 23334444322 1111211 11 367888896543211100
Q ss_pred hhhccCCCCCCCCccc--ccccCCCCCCcEEEEecCCCccCC-H---HHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchh
Q 011490 254 DKLERGDKTSNDGSGC--LKWLDSWQPGSAVYVCLGSLCDSS-T---RQLIELGLGLEAT-KKPFIWVIRPGDQAKGLED 326 (484)
Q Consensus 254 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~ 326 (484)
. .. ..+.. ...+.. .+++.|++++=...+.. + ..+..+++++.+. +.++||...+...
T Consensus 162 ~----~~----~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------ 226 (346)
T PF02350_consen 162 K----EE----IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------ 226 (346)
T ss_dssp H----HT----TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------
T ss_pred H----HH----HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------
Confidence 0 00 01111 012112 45668999985555554 3 3455567777665 7889999874321
Q ss_pred hhhhhHHHHHhc-CCCeEeeCcCC---hhhhcCCCCccccccccchhhHH-HHHHcCCCEeccccccchhhHHHHHHHHh
Q 011490 327 WLLAEKFEERIE-GRGLLIRGWAP---QVVILSHPAIGGFLTHCGWNSVL-EAVSNGLPMVTWPFFADQFCNEKLVVQVL 401 (484)
Q Consensus 327 ~~l~~~~~~~~~-~~nv~~~~~~p---q~~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~~~e~~ 401 (484)
....+.+... -+|+.+.+-++ ...+|.++++ +|+..| ++. ||.++|+|.|.+ -|+-..-.-+ ..
T Consensus 227 --~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~ 295 (346)
T PF02350_consen 227 --GSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ER 295 (346)
T ss_dssp --HHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HT
T ss_pred --HHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hh
Confidence 1112222222 14888887776 4668889999 999999 666 999999999999 3333322222 23
Q ss_pred cceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcC
Q 011490 402 RIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE 440 (484)
Q Consensus 402 G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 440 (484)
|..+.+ . .+.++|.+++.+++++
T Consensus 296 ~~nvlv--~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 296 GSNVLV--G--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp TSEEEE--T--------------SSHHHHHHHHHHHHH-
T ss_pred cceEEe--C--------------CCHHHHHHHHHHHHhC
Confidence 444443 2 6899999999999975
No 102
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.20 E-value=0.00074 Score=67.88 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=51.0
Q ss_pred EeeCcCChhhhcCCCCcccccccc----chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCccc
Q 011490 343 LIRGWAPQVVILSHPAIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADE 418 (484)
Q Consensus 343 ~~~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~ 418 (484)
++.++.+...++...++ ||.-+ =-++++||+++|+|+|+.-..+ + ..+ +.-+-|... .
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--~-------- 348 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--D-------- 348 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--C--------
Confidence 34566666679988888 88774 3468999999999999985443 2 333 233333333 2
Q ss_pred ccCCCccCHHHHHHHHHHHhcCC
Q 011490 419 ERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 419 ~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
+.+++.+++.++|+++
T Consensus 349 -------~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 349 -------DGKGFVRATLKALAEE 364 (462)
T ss_pred -------CHHHHHHHHHHHHccC
Confidence 5779999999998754
No 103
>PLN00142 sucrose synthase
Probab=98.17 E-value=0.00039 Score=73.82 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=48.0
Q ss_pred cccc---cchh-hHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHH-
Q 011490 362 FLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINM- 436 (484)
Q Consensus 362 ~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~- 436 (484)
||.- -|.| ++.||+++|+|+|+.... .....+ +.-.-|..++.. ++++++++|.+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV-~dG~tG~LV~P~---------------D~eaLA~aI~~l 729 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEII-VDGVSGFHIDPY---------------HGDEAANKIADF 729 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeCCC---------------CHHHHHHHHHHH
Confidence 6653 3444 899999999999986543 344455 354468777655 67777777765
Q ss_pred ---HhcCChhHHHHHHHHHH
Q 011490 437 ---LMDEGEERDERRRRARE 453 (484)
Q Consensus 437 ---vl~~~~~~~~~r~~a~~ 453 (484)
+++|++..+.+.+++++
T Consensus 730 LekLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 730 FEKCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 45777666666666544
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.16 E-value=0.0022 Score=65.68 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=71.5
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHH---hCCCCEEEEEeCCCCCCCchhhhhhhHHHHHh--cCCCeE-eeCcCCh--hh
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLE---ATKKPFIWVIRPGDQAKGLEDWLLAEKFEERI--EGRGLL-IRGWAPQ--VV 352 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~nv~-~~~~~pq--~~ 352 (484)
.+++..|.... .+.+..+++|++ +.+.++++..++... +-+.+.... .+.++. ...|-.. ..
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~~--------~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDPE--------LEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcHH--------HHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 45666677653 233344444444 336676666432210 111221111 134444 3455322 24
Q ss_pred hcCCCCccccccc---cchh-hHHHHHHcCCCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccC
Q 011490 353 ILSHPAIGGFLTH---CGWN-SVLEAVSNGLPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK 426 (484)
Q Consensus 353 ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 426 (484)
++..+++ +|.- -|.| +.+||+++|+|.|+....+ |.......-. ..+-|..++.. +
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~-~~~~G~lv~~~---------------d 414 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPED-GEATGFVFDDF---------------N 414 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCC-CCCceEEeCCC---------------C
Confidence 7888888 7753 2443 7889999999999875432 2111110001 22667777654 7
Q ss_pred HHHHHHHHHHHhc
Q 011490 427 KEDVKKAINMLMD 439 (484)
Q Consensus 427 ~~~l~~ai~~vl~ 439 (484)
+++|.++|.++++
T Consensus 415 ~~~la~~i~~~l~ 427 (466)
T PRK00654 415 AEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999886
No 105
>PLN02316 synthase/transferase
Probab=98.15 E-value=0.0028 Score=69.24 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=72.6
Q ss_pred CCeEeeCcCChh---hhcCCCCcccccccc---c-hhhHHHHHHcCCCEecccccc--chhhHH----HHH--HHHhcce
Q 011490 340 RGLLIRGWAPQV---VILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFA--DQFCNE----KLV--VQVLRIG 404 (484)
Q Consensus 340 ~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~na----~~~--~e~~G~g 404 (484)
.++.+....+.. .++..+++ |+.-. | -.+.+||+++|+|.|+....+ |..... .+. ...-+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 456655444543 57888888 77532 2 248899999999888765433 222111 000 0012456
Q ss_pred eEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 011490 405 VTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 482 (484)
...+. .+++.|..+|.+++.+ +.+....+++..++.|.+.-|-...+++.++-..+.
T Consensus 978 flf~~---------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 978 FSFDG---------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred EEeCC---------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 66654 4889999999999963 334455566666666666666666666666555444
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.10 E-value=0.0031 Score=64.84 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=72.3
Q ss_pred EEEEecCCCccCC-HHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhc--CCCeEeeCcCChh---hhc
Q 011490 281 AVYVCLGSLCDSS-TRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIE--GRGLLIRGWAPQV---VIL 354 (484)
Q Consensus 281 ~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~--~~nv~~~~~~pq~---~ll 354 (484)
.+++..|.+.... .+.+.+.+..+.+.+.++++...+.. . +-+.+.+... ..|+.+....++. .++
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~---~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP---E-----YEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH---H-----HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 4566667765322 23333333333334556555543321 0 1122222212 4677654444432 467
Q ss_pred CCCCccccccc-----cchhhHHHHHHcCCCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCH
Q 011490 355 SHPAIGGFLTH-----CGWNSVLEAVSNGLPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKK 427 (484)
Q Consensus 355 ~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~ 427 (484)
..+++ ++.. +| .+.+||+++|+|.|+....+ |........ ...|.|..++.. ++
T Consensus 369 ~~aDv--~l~pS~~E~~g-l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~~---------------~~ 429 (476)
T cd03791 369 AGADF--FLMPSRFEPCG-LTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEGY---------------NA 429 (476)
T ss_pred HhCCE--EECCCCCCCCc-HHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCCC---------------CH
Confidence 78888 6643 33 37799999999999876543 221111111 123468777654 78
Q ss_pred HHHHHHHHHHhc
Q 011490 428 EDVKKAINMLMD 439 (484)
Q Consensus 428 ~~l~~ai~~vl~ 439 (484)
+++.++|.++++
T Consensus 430 ~~l~~~i~~~l~ 441 (476)
T cd03791 430 DALLAALRRALA 441 (476)
T ss_pred HHHHHHHHHHHH
Confidence 999999999885
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.09 E-value=0.0046 Score=63.48 Aligned_cols=129 Identities=11% Similarity=-0.009 Sum_probs=73.3
Q ss_pred EEEEecCCCccC-CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHH--hcCCCeEeeCcCChh---hhc
Q 011490 281 AVYVCLGSLCDS-STRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEER--IEGRGLLIRGWAPQV---VIL 354 (484)
Q Consensus 281 ~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~nv~~~~~~pq~---~ll 354 (484)
.+++..|..... ..+.+.+.+..+.+.+.++++...+.. . ..+.+... ..+.++.+....+.. .++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~---~-----~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDP---E-----LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCH---H-----HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 455666776542 223333333333334566665543321 0 11222221 124566665555543 478
Q ss_pred CCCCccccccc---cchh-hHHHHHHcCCCEeccccccchhhHHHHHHHHh------cceeEeccCCCCCCcccccCCCc
Q 011490 355 SHPAIGGFLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL------RIGVTIGAERPPSLADEERNGVP 424 (484)
Q Consensus 355 ~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~------G~g~~l~~~~~~~~~~~~~~~~~ 424 (484)
..+++ +|.- -|.| +.+||+++|+|.|+....+ ....+ +.. +.|..++..
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~~-------------- 422 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEEY-------------- 422 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCCC--------------
Confidence 88888 7743 2433 7889999999999875533 22222 122 677777544
Q ss_pred cCHHHHHHHHHHHhc
Q 011490 425 VKKEDVKKAINMLMD 439 (484)
Q Consensus 425 ~~~~~l~~ai~~vl~ 439 (484)
+++++.++|.+++.
T Consensus 423 -d~~~la~~i~~~l~ 436 (473)
T TIGR02095 423 -DPGALLAALSRALR 436 (473)
T ss_pred -CHHHHHHHHHHHHH
Confidence 78899999999886
No 108
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.09 E-value=0.00033 Score=69.40 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCeEeeCcCCh-hhhcCCCCccccccc--cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCC
Q 011490 339 GRGLLIRGWAPQ-VVILSHPAIGGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSL 415 (484)
Q Consensus 339 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~ 415 (484)
..++.+.++.++ ..++..+++=.+.++ |...+++||+++|+|+|+..... .....+ +.-..|..++..
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~~----- 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPKG----- 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCCC-----
Confidence 457888777665 458888888333333 23458999999999999965432 123344 355677777544
Q ss_pred cccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 011490 416 ADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAK 459 (484)
Q Consensus 416 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~ 459 (484)
+.+++.++|..+++|++..+.+.+++++.++.+.
T Consensus 331 ----------d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 331 ----------DIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred ----------cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998777778888877766554
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.95 E-value=0.014 Score=57.98 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCeEeeCcCChhh---hcCCCCccccc------cccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEec
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFL------THCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 408 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I------~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~ 408 (484)
.+||...+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|+.++ ...+ +..+ +..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 57999999998655 67788883321 22332 358999999999998763 2222 2333 33332
Q ss_pred cCCCCCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 409 AERPPSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
. -+.+++.++|.+++.++
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhcC
Confidence 2 37899999999977544
No 110
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.95 E-value=0.0024 Score=65.55 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=68.3
Q ss_pred CCCeEeeCcCChhhhcCCCCcccccccc----chhhHHHHHHcCCCEeccccccchhhHHHHHHHHh-----c-ceeEec
Q 011490 339 GRGLLIRGWAPQVVILSHPAIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL-----R-IGVTIG 408 (484)
Q Consensus 339 ~~nv~~~~~~pq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~-----G-~g~~l~ 408 (484)
.++|.+.+...-..++..+++ +|... --++++||+++|+|+|+. |.......+ +.. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 468888886666778888888 66442 346899999999999995 344444455 342 2 677775
Q ss_pred cCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011490 409 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGE 456 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~ 456 (484)
.. +.+++.++|.++++|++..+.+.+++++..+
T Consensus 426 ~~---------------d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~ 458 (475)
T cd03813 426 PA---------------DPEALARAILRLLKDPELRRAMGEAGRKRVE 458 (475)
T ss_pred CC---------------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44 7899999999999998666666666654433
No 111
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.84 E-value=0.0045 Score=57.23 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (484)
||.|-. .-.-|+.-+-.|-++|.++||+|.+.+-... .+.+.+.. .||.+.++.- .+..
T Consensus 2 kVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Igk--------~g~~----- 60 (346)
T COG1817 2 KVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIGK--------HGGV----- 60 (346)
T ss_pred eEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeecc--------cCCc-----
Confidence 344433 3345889999999999999999999875432 22233221 2677776641 0000
Q ss_pred CccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchHHH
Q 011490 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSCFC 153 (484)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~~~ 153 (484)
..-..+.. .......|.+++.+ .+||+.+. -.++.+..+|--+|+|.+.+.-.....
T Consensus 61 ---tl~~Kl~~-~~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 61 ---TLKEKLLE-SAERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred ---cHHHHHHH-HHHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 11112222 22334566778888 89999999 557789999999999999986655444
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.82 E-value=0.00071 Score=67.96 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCeEeeCcCChhh---hcCCCCccccccccc----hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
..++...+|+++.+ ++..+++.++|...- -++++||+++|+|+|+... ......+ +..+.|..++..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC-
Confidence 45788999999764 444433333765543 4589999999999998653 3355566 455578777644
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 457 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~ 457 (484)
-+.+++.++|.++++|++..+.+++++++..+.
T Consensus 362 -------------~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~ 394 (407)
T cd04946 362 -------------PTPNELVSSLSKFIDNEEEYQTMREKAREKWEE 394 (407)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 478999999999999886666666666665443
No 113
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.81 E-value=0.00078 Score=67.56 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=77.2
Q ss_pred CCCeEeeCcCChhh---hcCCCCccccccc---------cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhccee
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTH---------CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGV 405 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~ 405 (484)
.+++.+.+|+|+.+ ++..+++ +|.- -|. ++++||+++|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46799999999754 7888888 7653 244 5789999999999997543 234445 3545677
Q ss_pred EeccCCCCCCcccccCCCccCHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 406 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
.++.. +.+++.++|.++++ |++..+++.+++++..+. --+.....+++.+.++
T Consensus 351 lv~~~---------------d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPEN---------------DAQALAQRLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLLQ 404 (406)
T ss_pred EeCCC---------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHh
Confidence 77544 79999999999998 886566666666554433 2233355555555544
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00018 Score=57.52 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=74.0
Q ss_pred EEEecCCCccCCHHHHH--HHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC-hhhhcCCCC
Q 011490 282 VYVCLGSLCDSSTRQLI--ELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP-QVVILSHPA 358 (484)
Q Consensus 282 V~vs~GS~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p-q~~ll~~~~ 358 (484)
|||+-||....=...+. ++.+-.+.-..++|+..|+++. .| ...-.++-+.+.+ -+.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp------vagl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP------VAGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc------ccccEEEeechHHHHHHHhhcce
Confidence 78999998431112211 1233333445688999988642 22 0111233334445 355666677
Q ss_pred ccccccccchhhHHHHHHcCCCEecccccc--------chhhHHHHHHHHhcceeEeccC
Q 011490 359 IGGFLTHCGWNSVLEAVSNGLPMVTWPFFA--------DQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 359 ~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
+ +|+|||.||++.++..++|.+++|-.. .|-..|..++ +.++=+...+.
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spt 124 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPT 124 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCC
Confidence 6 999999999999999999999999643 5788999997 88877777544
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.78 E-value=0.019 Score=59.05 Aligned_cols=155 Identities=13% Similarity=0.159 Sum_probs=89.7
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhC-----CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcC
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILS 355 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~ 355 (484)
.++++.|.+.. .+.+..+++|+... +.+ ++.+|.+..... +.+-..+....++|...++.+...++.
T Consensus 320 ~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~-l~i~G~G~~~~~-----l~~~i~~~~l~~~V~f~G~~~~~~~~~ 391 (500)
T TIGR02918 320 FSIITASRLAK--EKHIDWLVKAVVKAKKSVPELT-FDIYGEGGEKQK-----LQKIINENQAQDYIHLKGHRNLSEVYK 391 (500)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeE-EEEEECchhHHH-----HHHHHHHcCCCCeEEEcCCCCHHHHHH
Confidence 45566677653 34455566665432 233 334555432111 211111111245688888888888999
Q ss_pred CCCcccccc---ccch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC-CCCCCcccccCCCccC-HHH
Q 011490 356 HPAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE-RPPSLADEERNGVPVK-KED 429 (484)
Q Consensus 356 ~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~-~~~~~~~~~~~~~~~~-~~~ 429 (484)
.+++ +|. .=|. .+++||+++|+|+|+....+ .....+ +.-.-|..++.. ++ . -.-+ .++
T Consensus 392 ~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~-----~----d~~~~~~~ 456 (500)
T TIGR02918 392 DYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEE-----D----DEDQIITA 456 (500)
T ss_pred hCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccc-----c----chhHHHHH
Confidence 9998 775 2333 58999999999999975431 123334 343456666522 00 0 0012 788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 011490 430 VKKAINMLMDEGEERDERRRRAREYGETAK 459 (484)
Q Consensus 430 l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~ 459 (484)
|+++|.++++ ++..+.+.+++.+.++.+.
T Consensus 457 la~~I~~ll~-~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 457 LAEKIVEYFN-SNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHHHhC-hHHHHHHHHHHHHHHHhcC
Confidence 9999999995 5456677777776655544
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.68 E-value=0.00023 Score=61.95 Aligned_cols=146 Identities=19% Similarity=0.253 Sum_probs=91.5
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHh-----CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC---h
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEA-----TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP---Q 350 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p---q 350 (484)
++.+++..|+.... +.+..+++++.. ...-.++.+|.... ... +-..........++.+..+++ .
T Consensus 14 ~~~~il~~g~~~~~--K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~---~~~--~~~~~~~~~~~~~i~~~~~~~~~~l 86 (172)
T PF00534_consen 14 KKKIILFIGRLDPE--KGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY---KKE--LKNLIEKLNLKENIIFLGYVPDDEL 86 (172)
T ss_dssp TSEEEEEESESSGG--GTHHHHHHHHHHHHHHHHTTEEEEEESHCCH---HHH--HHHHHHHTTCGTTEEEEESHSHHHH
T ss_pred CCeEEEEEecCccc--cCHHHHHHHHHHHHhhcCCCeEEEEEccccc---ccc--ccccccccccccccccccccccccc
Confidence 34666777776542 334445555543 22333444442211 000 111111222356888989997 2
Q ss_pred hhhcCCCCccccccc----cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccC
Q 011490 351 VVILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK 426 (484)
Q Consensus 351 ~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~ 426 (484)
..++..+++ +|+. |..+++.||+++|+|+|+. |...+...+ +..+.|..++.. +
T Consensus 87 ~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~~---------------~ 144 (172)
T PF00534_consen 87 DELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDPN---------------D 144 (172)
T ss_dssp HHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEESTT---------------S
T ss_pred cccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCCC---------------C
Confidence 558888888 8877 5667999999999999975 455666666 466668777643 8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011490 427 KEDVKKAINMLMDEGEERDERRRRARE 453 (484)
Q Consensus 427 ~~~l~~ai~~vl~~~~~~~~~r~~a~~ 453 (484)
.+++.++|.++++|++..+.+++++++
T Consensus 145 ~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 145 IEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 999999999999988767777777665
No 117
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.64 E-value=0.0049 Score=55.71 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCCeEeeCcCCh----hhhcCCCCccccccccc----hhhHHHHHHcCCCEeccccccch
Q 011490 339 GRGLLIRGWAPQ----VVILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQ 390 (484)
Q Consensus 339 ~~nv~~~~~~pq----~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ 390 (484)
..|+.+.+++++ ..++..+++ +|+... .++++||+++|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 568888888732 224444777 887776 68999999999999998876543
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.0015 Score=65.22 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHH-hcCCCeEeeCcCChhh---h
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEER-IEGRGLLIRGWAPQVV---I 353 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~nv~~~~~~pq~~---l 353 (484)
++.++|.||.+....+++.+..-.+.|++.+.-.+|........ ... +-..+... ..++.+.+.++.|+.+ .
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EAR--LRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHH--HHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHH--HHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 44599999999999999999998999999888889887654311 011 22222111 1245677777777544 4
Q ss_pred cCCCCccccc---cccchhhHHHHHHcCCCEeccccccc-hhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHH
Q 011490 354 LSHPAIGGFL---THCGWNSVLEAVSNGLPMVTWPFFAD-QFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKED 429 (484)
Q Consensus 354 l~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~D-Q~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
+..+++ +. ..+|.+|++|||+.|||+|++|--.= ...-+..+ ..+|+...+- .+.++
T Consensus 359 ~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA----------------~s~~e 419 (468)
T PF13844_consen 359 YQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA----------------DSEEE 419 (468)
T ss_dssp GGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSHHH
T ss_pred hhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC----------------CCHHH
Confidence 445666 43 46788999999999999999996432 23444556 4788875542 34444
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 011490 430 VKKAINMLMDEGEERDERRRR 450 (484)
Q Consensus 430 l~~ai~~vl~~~~~~~~~r~~ 450 (484)
-.+..-++-+|+++.+.+|++
T Consensus 420 Yv~~Av~La~D~~~l~~lR~~ 440 (468)
T PF13844_consen 420 YVEIAVRLATDPERLRALRAK 440 (468)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 444444666777444444433
No 119
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.015 Score=55.96 Aligned_cols=323 Identities=13% Similarity=0.103 Sum_probs=167.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCC-CeEEEEeCC-Cch-hhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG-ALVTIVTTP-MNA-ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rG-h~V~~~~~~-~~~-~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 84 (484)
++||++ .+|++=.++-+-+|.+++.+.+ .+..++.+. ... +.....++ ...++.|..+ +.-.
T Consensus 3 ~~Kv~~-I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le----------~~~i~~pdy~--L~i~-- 67 (383)
T COG0381 3 MLKVLT-IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLE----------LFGIRKPDYD--LNIM-- 67 (383)
T ss_pred ceEEEE-EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHH----------HhCCCCCCcc--hhcc--
Confidence 345554 4599999999999999999997 565555443 322 33333322 1112111111 0000
Q ss_pred ccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--C-CcchHHHHHHcCCCcEEEecchHHHHHHHHhhh
Q 011490 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV--C-LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLS 161 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~-~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 161 (484)
+....+..........+.+++++ .+||+|++.+ . +.+++++|.+.+||+.-+-..--+
T Consensus 68 --------~~~~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt--------- 128 (383)
T COG0381 68 --------KPGQTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT--------- 128 (383)
T ss_pred --------ccCCCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc---------
Confidence 00112333444566777888888 8999999776 2 356688999999998864211000
Q ss_pred hcccCCCCCCCCcccccCCCCCccccccccCchhhhhhhhHHHHHHhhhcccEEEeccccccCHHHHH-HHHhccCC-ce
Q 011490 162 VSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEEMEPAYVE-EYKNARDG-KV 239 (484)
Q Consensus 162 ~~~~~~~~~~~~~~~~~Pg~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~-~~~~~~~~-~~ 239 (484)
-..+ +|. +..+.+...+ +...+..+- .+.. ..+...++ ++
T Consensus 129 ------------~~~~---~PE----------------E~NR~l~~~~--S~~hfapte-----~ar~nLl~EG~~~~~I 170 (383)
T COG0381 129 ------------GDLY---FPE----------------EINRRLTSHL--SDLHFAPTE-----IARKNLLREGVPEKRI 170 (383)
T ss_pred ------------CCCC---CcH----------------HHHHHHHHHh--hhhhcCChH-----HHHHHHHHcCCCccce
Confidence 0000 111 0011111100 111111110 0011 11222333 46
Q ss_pred EEeCcccCCCcccchhhccCCCCCCCCcccccc-cCCCCCCcEEEEecCCCccCCHHHHHHHHHHH----HhC-CCCEEE
Q 011490 240 WCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKW-LDSWQPGSAVYVCLGSLCDSSTRQLIELGLGL----EAT-KKPFIW 313 (484)
Q Consensus 240 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al----~~~-~~~~i~ 313 (484)
+.+|....+.-.... .. ...+.+.... ++. +.+..|.+|+=-..+.. +.+..+..++ +.. ++.+|.
T Consensus 171 fvtGnt~iDal~~~~----~~--~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viy 242 (383)
T COG0381 171 FVTGNTVIDALLNTR----DR--VLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIY 242 (383)
T ss_pred EEeCChHHHHHHHHH----hh--hccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEE
Confidence 667754322100000 00 0001111111 222 22337888775554444 4444444444 333 455555
Q ss_pred EEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeC---cCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccch
Q 011490 314 VIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRG---WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 390 (484)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~---~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 390 (484)
.+-.. ...++ +. +...-..+++.+.+ |.+...++.++-+ ++|-.| |-.-||-..|+|.+++=...++
T Consensus 243 p~H~~---~~v~e---~~-~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TER 312 (383)
T COG0381 243 PVHPR---PRVRE---LV-LKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTER 312 (383)
T ss_pred eCCCC---hhhhH---HH-HHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCC
Confidence 54333 11222 11 11222234666554 5677889999988 999887 4567999999999999888888
Q ss_pred hhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 391 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 391 ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
|. ++ ..|.-+.+. .+.+.|.+++.++++++
T Consensus 313 PE---~v--~agt~~lvg----------------~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 313 PE---GV--EAGTNILVG----------------TDEENILDAATELLEDE 342 (383)
T ss_pred cc---ce--ecCceEEeC----------------ccHHHHHHHHHHHhhCh
Confidence 87 33 334444442 56799999999999987
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.38 E-value=0.013 Score=58.27 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCCeEeeCcCChhh---hcCCCCccccccc----cch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC
Q 011490 339 GRGLLIRGWAPQVV---ILSHPAIGGFLTH----CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 339 ~~nv~~~~~~pq~~---ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
..++.+.+++|+.+ ++..+++ +|.. -|. .++.||+++|+|+|+.... .+...+ +.-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 45788889998644 6888888 7653 333 5778999999999997653 234445 354567655322
Q ss_pred CCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 411 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
.+.+++.++|.++++|++. .++ ++..++...+--+-....+++.+.+.
T Consensus 329 --------------~d~~~la~~I~~ll~d~~~-~~~-------~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADPEL-TQI-------AEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCHHH-HHH-------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4899999999999998732 223 33333222233344445555555544
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.05 E-value=0.0013 Score=54.69 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=50.2
Q ss_pred CCCeEeeCcCCh-hhhcCCCCccccccc--cc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCC
Q 011490 339 GRGLLIRGWAPQ-VVILSHPAIGGFLTH--CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPS 414 (484)
Q Consensus 339 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~ 414 (484)
.+|+.+.+|++. ..++..+++.+..+. .| -+++.|++++|+|+|+.+.. ..... +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~---- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--A---- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--C----
Confidence 459999999974 558889999555442 22 48999999999999997661 22333 356778777 3
Q ss_pred CcccccCCCccCHHHHHHHHHHHhcC
Q 011490 415 LADEERNGVPVKKEDVKKAINMLMDE 440 (484)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~ai~~vl~~ 440 (484)
-+++++.++|.++++|
T Consensus 120 ----------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ----------NDPEELAEAIERLLND 135 (135)
T ss_dssp ----------T-HHHHHHHHHHHHH-
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 3899999999999875
No 122
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.90 E-value=0.0097 Score=49.63 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (484)
||++++.....| ...+++.|+++||+|++++.....+..... .++.++.++.+ .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~-------~-------- 54 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP-------R-------- 54 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC-------C--------
Confidence 578887766656 457899999999999999985443222221 26777776411 0
Q ss_pred CccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc---chHHHHHHcC-CCcEE
Q 011490 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLP---WTVSSACKFN-VPRIV 145 (484)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---~a~~~A~~lg-IP~v~ 145 (484)
. ..+..+ . .. .+..++++ .+||+|.+..... .+..++...+ +|.+.
T Consensus 55 k--~~~~~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 55 K--SPLNYI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred C--ccHHHH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 0 111111 1 12 66888888 8999998877543 2445667788 88886
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.78 E-value=0.011 Score=57.73 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCCeEeeCcCChhhh---cCCCCccccccc-------cch------hhHHHHHHcCCCEeccccccchhhHHHHHHHHhc
Q 011490 339 GRGLLIRGWAPQVVI---LSHPAIGGFLTH-------CGW------NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR 402 (484)
Q Consensus 339 ~~nv~~~~~~pq~~l---l~~~~~~~~I~H-------gG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G 402 (484)
.+|+...+|+|+.++ |.. +.+++... +.+ +-+.+.+++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 468999999998765 443 33222221 111 2277889999999986 456778888 6999
Q ss_pred ceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 011490 403 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIK 477 (484)
Q Consensus 403 ~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 477 (484)
+|+.++ +.+++.+++..+. .++.++|++|+++++++++ .|.-...++++++.
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 999984 3468899888754 3566789999999999977 35555555555543
No 124
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.37 E-value=0.18 Score=48.69 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN 53 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~ 53 (484)
||+++-....|++.-..++.++|+++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58999999999999999999999998 999999999866554443
No 125
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.35 E-value=0.12 Score=51.73 Aligned_cols=178 Identities=10% Similarity=0.093 Sum_probs=99.7
Q ss_pred ccccCCCCCCcEEEEecCCCccC------C----HHHHHHHHHHHHhCCCCEEEEEeCCC----CCCCchhhhhhhHHHH
Q 011490 270 LKWLDSWQPGSAVYVCLGSLCDS------S----TRQLIELGLGLEATKKPFIWVIRPGD----QAKGLEDWLLAEKFEE 335 (484)
Q Consensus 270 ~~~l~~~~~~~~V~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~~ 335 (484)
..|+.....+++|.|+....... . .+.+.++++.+...|+++++..--.. ..++.. ....+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~---~~~~l~~ 301 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM---VALNLRQ 301 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH---HHHHHHH
Confidence 34554333445788886654421 1 12334455655556888776542110 111111 1233333
Q ss_pred HhcC-CCeE--eeCcCCh--hhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeE-ecc
Q 011490 336 RIEG-RGLL--IRGWAPQ--VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT-IGA 409 (484)
Q Consensus 336 ~~~~-~nv~--~~~~~pq--~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~-l~~ 409 (484)
.... .++. ..++-|. ..+++++++ +|..= +=++.-|+..|||.+.++. | +-....+ +.+|+... .+.
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~ 374 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDI 374 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEech
Confidence 3332 2222 2223343 367888887 77432 2356678899999999988 3 4444555 58888855 566
Q ss_pred CCCCCCcccccCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 410 ERPPSLADEERNGVPVKKEDVKKAINMLMDEGEE-RDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
+ .++.++|.+.+.++++|.++ ++.+++++.+++++.. ....++++.|.
T Consensus 375 ~-------------~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~~~----------~~~~~~~~~~~ 423 (426)
T PRK10017 375 R-------------HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQTGM----------QMVQSVLERIG 423 (426)
T ss_pred h-------------hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhc
Confidence 5 68999999999999987532 2233444444444333 44666666554
No 126
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.32 E-value=0.3 Score=47.98 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=69.8
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceE-EEEeeCCCccC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQ-VIEFYFPCQEV 77 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~ 77 (484)
|++.. +||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+...++.. +.++ ++.++
T Consensus 1 ~~~~~---~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~------ 63 (352)
T PRK10422 1 MDKPF---RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIK------ 63 (352)
T ss_pred CCCCC---ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEec------
Confidence 55543 489999999999999999999999998 8999999988766644432 2332 22221
Q ss_pred CCCCCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 78 GLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
.. .. .....+.. .. .+...+++ .++|++|.-........++...|.|..+
T Consensus 64 ---~~-------~~-~~~~~~~~----~~-~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 64 ---NK-------KA-GASEKIKN----FF-SLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ---cc-------cc-cHHHHHHH----HH-HHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00 00 00111111 11 22334555 6999999766554556677777888765
No 127
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.28 E-value=1.4 Score=44.09 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=66.4
Q ss_pred EEecCCCccCCHHHHHHHHHHHHhCCCCE-EEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC-h---hhhcCCC
Q 011490 283 YVCLGSLCDSSTRQLIELGLGLEATKKPF-IWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP-Q---VVILSHP 357 (484)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p-q---~~ll~~~ 357 (484)
++..|.......+.+..+++|+...+..+ ++.+|.+... ...++...++.. + ..++..+
T Consensus 244 il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~----------------~~~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 244 IAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF----------------TAGNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc----------------cccceEEecCcCCHHHHHHHHHhC
Confidence 33444422223344567888888765433 4445543210 123555556653 2 3456667
Q ss_pred Ccccccccc----chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHH
Q 011490 358 AIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKA 433 (484)
Q Consensus 358 ~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 433 (484)
++ ||.-. --++++||+++|+|+|+....+ ....+ +. +-|..++.. +.++|+++
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~---------------d~~~La~~ 364 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE---------------EVLQLAQL 364 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC---------------CHHHHHhc
Confidence 77 77543 2368999999999999997765 22223 23 468888655 67778765
Q ss_pred H
Q 011490 434 I 434 (484)
Q Consensus 434 i 434 (484)
+
T Consensus 365 ~ 365 (405)
T PRK10125 365 S 365 (405)
T ss_pred c
Confidence 3
No 128
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.01 E-value=0.92 Score=42.81 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN 53 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~ 53 (484)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58999999999999999999999997 489999999866654444
No 129
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.98 E-value=1.8 Score=45.61 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=52.7
Q ss_pred CeEeeCcCChh-hhcCCCCcccccccc---c-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCC
Q 011490 341 GLLIRGWAPQV-VILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSL 415 (484)
Q Consensus 341 nv~~~~~~pq~-~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~ 415 (484)
++.+.++.++. .++..+++ ||.-. | -++++||+++|+|+|+....+... + .. |.+..+.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec-------
Confidence 36666777754 48888888 87633 2 468899999999999987755321 2 12 2222221
Q ss_pred cccccCCCccCHHHHHHHHHHHhcCC
Q 011490 416 ADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 416 ~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
-+.+++.++|.++++|+
T Consensus 666 ---------~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 666 ---------KTSEDFVAKVKEALANE 682 (794)
T ss_pred ---------CCHHHHHHHHHHHHhCc
Confidence 26899999999999877
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.16 Score=51.25 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=84.0
Q ss_pred CCCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhc-----CCCeEeeCcCC--
Q 011490 277 QPGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIE-----GRGLLIRGWAP-- 349 (484)
Q Consensus 277 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~nv~~~~~~p-- 349 (484)
+++-+||+|++......++.+..=+.-++..+.-++|..+++.... +...++.... ...+++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 3456999999999999999999888888889999999998864332 2233333222 34556666655
Q ss_pred -hhhhcCCCCcccccc---ccchhhHHHHHHcCCCEeccccccchhh--HHHHHHHHhcceeEe
Q 011490 350 -QVVILSHPAIGGFLT---HCGWNSVLEAVSNGLPMVTWPFFADQFC--NEKLVVQVLRIGVTI 407 (484)
Q Consensus 350 -q~~ll~~~~~~~~I~---HgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~~~e~~G~g~~l 407 (484)
|.+=+..+++ |.. =||..|+.|+|..|||+|..+ ++|+. |+.-++..+|+-..+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 3444555665 653 589999999999999999985 56654 444443455555444
No 131
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.91 E-value=1.7 Score=41.65 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=42.2
Q ss_pred ChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhh---HHHHHHHHhcceeEeccC
Q 011490 349 PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFC---NEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 349 pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~---na~~~~e~~G~g~~l~~~ 410 (484)
|+...|..++. .+||---.+-+.||+..|+|+.++|...-... ....+ ++.|+-..++..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L-~~~g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL-EERGAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-HHCCCEEECCCc
Confidence 57778888886 46666667888999999999999998762122 33345 356766666544
No 132
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.90 E-value=0.0093 Score=46.08 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCcccccccCCCCCCcEEEEecCCCccC---CH--HHHHHHHHHHHhCCCCEEEEEeCCC
Q 011490 265 DGSGCLKWLDSWQPGSAVYVCLGSLCDS---ST--RQLIELGLGLEATKKPFIWVIRPGD 319 (484)
Q Consensus 265 ~~~~~~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~ 319 (484)
.+..+..|+...+.+|.|+||+||.... .. ..+..++++++.++..+|.+++...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 3567789999999999999999998863 22 4688899999999999999998664
No 133
>PRK14098 glycogen synthase; Provisional
Probab=95.84 E-value=0.18 Score=51.81 Aligned_cols=82 Identities=10% Similarity=-0.024 Sum_probs=53.6
Q ss_pred CCCeEeeCcCChh---hhcCCCCcccccccc---ch-hhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTHC---GW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
+.++.+..+++.. .+++.+++ ++... |. .+.+||+++|+|.|+....+-........ +.-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeCC--
Confidence 5678888888764 57888888 77532 22 37789999999888876533111110011 12356766654
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
.++++|.++|.+++
T Consensus 436 -------------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 -------------YTPEALVAKLGEAL 449 (489)
T ss_pred -------------CCHHHHHHHHHHHH
Confidence 47899999999876
No 134
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.79 E-value=0.91 Score=44.37 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceE-EEEeeCCCccCCCCCCCCcc
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQ-VIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~~~~ 86 (484)
||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++ ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~---------~~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLD---------RKKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeC---------hhhh--
Confidence 58999999999999999999999997 8999999998766555443 2333 22221 1000
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
. .....+. .... +...+++ .++|++|.-........++...|.|.-+
T Consensus 62 ---~--~~~~~~~----~~~~-l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 62 ---K--AGERKLA----NQFH-LIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---c--chHHHHH----HHHH-HHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 0001111 1111 2333555 6999999766555667888888999766
No 135
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.72 E-value=0.012 Score=49.92 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHHHHHH
Q 011490 24 PMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIE 103 (484)
Q Consensus 24 P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (484)
-+..|+++|+++||+|+++++......-+. ...++.+..++.+... .. .......
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~---~~~~~~~-------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRP-------WP---LRLLRFL-------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SS-------SG---GGHCCHH--------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccc-------hh---hhhHHHH--------
Confidence 367899999999999999997544331110 1125777777643111 00 0001111
Q ss_pred HchHHHHHHH--HhcCCCCeEEEecCCC-cchHHHHH-HcCCCcEEE
Q 011490 104 MLRLPLETLF--KEIQPKPSCLISDVCL-PWTVSSAC-KFNVPRIVF 146 (484)
Q Consensus 104 ~~~~~l~~~l--~~~~~~~D~vI~D~~~-~~a~~~A~-~lgIP~v~~ 146 (484)
..+..++ +. .+||+|.+.... .....+++ ..++|+|.-
T Consensus 61 ---~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 61 ---RRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp ---HHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred ---HHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 2223344 45 899999988842 23334444 789999884
No 136
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.39 E-value=0.14 Score=44.24 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=65.9
Q ss_pred EEcCCCCCCHHHHHHHHHHH-HHC-CCeEEEEeCCCch--hhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 13 LFPFLAQGHMIPMIDIARLL-AQH-GALVTIVTTPMNA--ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 13 ~~~~~~~GHv~P~l~La~~L-~~r-Gh~V~~~~~~~~~--~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
++..++-||+.=|+.|.+.+ .++ .++..+++..+.. ..+.+. ++.. +...++..+|. ...
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~-~~~~--~~~~~~~~~~r---------~r~---- 65 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQL-EKSS--SKRHKILEIPR---------ARE---- 65 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHH-HHhc--cccceeeccce---------EEE----
Confidence 34457889999999999999 333 5666666654432 222222 1110 00112333221 000
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCC--CcchHHHHHHc------CCCcEEE
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVC--LPWTVSSACKF------NVPRIVF 146 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~l------gIP~v~~ 146 (484)
. ........+.........+.-+.+. +||+||+.+. +.....+|..+ |.+.|.+
T Consensus 66 v-~q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 66 V-GQSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred e-chhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 0 0123334444444555566666655 8999999994 45677889999 9999986
No 137
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.39 E-value=0.65 Score=45.48 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.++.. +.++-+- + ++.. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi-~-------~~~~-~-- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAI-P-------MPLG-H-- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEE-e-------cccc-c--
Confidence 479999999999999999999999996 9999999988665544443 2333221 1 0000 0
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
. ...+.. ...+...+++ .++|++|.-....-...++...|+|.-.
T Consensus 62 ------~-~~~~~~-----~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 ------G-ALEIGE-----RRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ------c-hhhhHH-----HHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 000000 1122344555 6999999776555666778888888765
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.32 E-value=1.9 Score=41.86 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceEE-EEeeCCCccCCCCCCCCcc
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQV-IEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~~i~~~~~~~~~~~~~~~~ 86 (484)
||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+...++.. +.++- +.++ .. .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~---------~~-~-- 60 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP---------LG-H-- 60 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC---------Cc-c--
Confidence 58999999999999999999999997 8999999987655544433 12322 1111 00 0
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
. ...+. ....+...++. .++|++|.-........++...|+|.-.
T Consensus 61 ------~-~~~~~-----~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 61 ------G-ALELT-----ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ------c-chhhh-----HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 00000 01123344555 6999999877665666777888888654
No 139
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.32 E-value=0.46 Score=48.41 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=78.8
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHH-HhcCCCeEeeCcCChhh----
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEE-RIEGRGLLIRGWAPQVV---- 352 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~nv~~~~~~pq~~---- 352 (484)
++-+||++|--....+++.++.-++-+++.+.-++|........+ . . +-..... -..++.|++.+-++-.+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge-~-r--f~ty~~~~Gl~p~riifs~va~k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE-Q-R--FRTYAEQLGLEPDRIIFSPVAAKEEHVRR 832 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch-H-H--HHHHHHHhCCCccceeeccccchHHHHHh
Confidence 455999999888889999999999999999999999987642111 0 0 1111111 11245555544444222
Q ss_pred -hcCCCCccccccccchhhHHHHHHcCCCEeccccccch-hhHHHHHHHHhcceeEe
Q 011490 353 -ILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ-FCNEKLVVQVLRIGVTI 407 (484)
Q Consensus 353 -ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ-~~na~~~~e~~G~g~~l 407 (484)
.|....++-..+ -|..|.++.|+.|||||.+|.-.-- ..-+-.++ ..|+|.-+
T Consensus 833 ~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hli 887 (966)
T KOG4626|consen 833 GQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLI 887 (966)
T ss_pred hhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHH
Confidence 232223333333 4688999999999999999986533 33344554 78888744
No 140
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.28 E-value=0.55 Score=48.27 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCCeEeeCcCCh-hhhcCCCCccccccc---cc-hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccC
Q 011490 339 GRGLLIRGWAPQ-VVILSHPAIGGFLTH---CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 410 (484)
Q Consensus 339 ~~nv~~~~~~pq-~~ll~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~ 410 (484)
.++|.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 478889888654 457888998 8753 44 4699999999999998754 3445555 355667777654
No 141
>PRK14099 glycogen synthase; Provisional
Probab=95.22 E-value=4.4 Score=41.72 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=28.9
Q ss_pred CcEEEEEcCCC------CCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLA------QGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~------~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
++||++++.-. -|=-.-.-+|.++|+++||+|.++.|..
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 78999998632 1222335678899999999999998744
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.80 E-value=0.25 Score=37.67 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=51.4
Q ss_pred ccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhH
Q 011490 365 HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEER 444 (484)
Q Consensus 365 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~ 444 (484)
+|-..-+.|++++|+|+|+-+. ......+ .-|...-.- . +.+++.++|..+++|+++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~~-------------~-~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIITY-------------N-DPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEEE-------------C-CHHHHHHHHHHHHCCHHHH
Confidence 4455688999999999998755 2333222 223222222 2 8999999999999998544
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 011490 445 DERRRRAREYGETAKTAIEEGGSSYLNIKLLI 476 (484)
Q Consensus 445 ~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 476 (484)
+++.+++++ .+.+..+....+++++
T Consensus 67 ~~ia~~a~~-------~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARE-------RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHH-------HHHHhCCHHHHHHHHH
Confidence 444444433 3333555555555554
No 143
>PHA01633 putative glycosyl transferase group 1
Probab=94.45 E-value=0.32 Score=47.09 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCeEee---CcCChh---hhcCCCCcccccccc---ch-hhHHHHHHcCCCEecccc------ccch------hhHHHH
Q 011490 339 GRGLLIR---GWAPQV---VILSHPAIGGFLTHC---GW-NSVLEAVSNGLPMVTWPF------FADQ------FCNEKL 396 (484)
Q Consensus 339 ~~nv~~~---~~~pq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~------~~DQ------~~na~~ 396 (484)
..++.+. +++++. .++..+++ ||.-. |+ .+++||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4577776 455543 57888888 87642 43 578899999999998633 2232 222322
Q ss_pred HHH-HhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcC
Q 011490 397 VVQ-VLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE 440 (484)
Q Consensus 397 ~~e-~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 440 (484)
.++ ..|.|..++ ..++++++++|.++++.
T Consensus 278 ~~~~~~g~g~~~~---------------~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIH---------------KFQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeec---------------CCCHHHHHHHHHHHHhc
Confidence 211 234444443 36999999999998553
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=94.02 E-value=0.53 Score=45.72 Aligned_cols=40 Identities=20% Similarity=0.065 Sum_probs=28.5
Q ss_pred CcCChhh---hcCCCCcccccc---ccc-hhhHHHHHHcCCCEeccccc
Q 011490 346 GWAPQVV---ILSHPAIGGFLT---HCG-WNSVLEAVSNGLPMVTWPFF 387 (484)
Q Consensus 346 ~~~pq~~---ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~ 387 (484)
.++|+.+ ++..+++ +|. ..| -.++.||+++|+|+|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 3466443 6888888 663 233 45899999999999998654
No 145
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.86 E-value=0.75 Score=39.63 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred HCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHHHHHHHchHHHHHHH
Q 011490 34 QHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLF 113 (484)
Q Consensus 34 ~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 113 (484)
++||+|++++...... +. .+++...+..+ ..... ........+..-..........+.++.
T Consensus 1 q~gh~v~fl~~~~~~~-~~----------~GV~~~~y~~~-------~~~~~-~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPP-IP----------PGVRVVRYRPP-------RGPTP-GTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCC-CC----------CCcEEEEeCCC-------CCCCC-CCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 5799999999543222 11 25666665321 11100 001111222222233344555666665
Q ss_pred HhcCCCCeEEEecCCCcchHHHHHHc-CCCcEEEecc
Q 011490 114 KEIQPKPSCLISDVCLPWTVSSACKF-NVPRIVFHGF 149 (484)
Q Consensus 114 ~~~~~~~D~vI~D~~~~~a~~~A~~l-gIP~v~~~~~ 149 (484)
++ +..||+||+.+---.+..+-..+ ++|.+.++-.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 55 89999999999755566777778 8999987443
No 146
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.53 E-value=2.4 Score=40.98 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAA 49 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~ 49 (484)
+||+++-..+.|++.=..++.+.|+++ +.+|++++.+.+..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 489999999999999999999999997 99999999875544
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.65 E-value=0.25 Score=42.44 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 18 AQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
..|=-.-+..|+++|+++||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 44566778999999999999999998763
No 148
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.16 E-value=9.5 Score=37.08 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+||+++-..+.|++.=.+++-+.|+++ +.++++++++...+.+... +.++-+- .......
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi----------~~~~~~~ 63 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVI----------IIDKKKK 63 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhc----------ccccccc
Confidence 589999999999999999999999998 6999999988665544433 1222211 0000000
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
. ........+...+++ .++|+||.=...+=...++...++|.-.
T Consensus 64 ------~-------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 ------G-------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------c-------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 001112233455666 6899999888776677777788888776
No 149
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=12 Score=35.88 Aligned_cols=125 Identities=15% Similarity=-0.007 Sum_probs=74.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (484)
+.+++++..|--||--.|--=|..|++.|.+|.+++....... ++.+ ..++++++.++.++.-...+
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~-----~hprI~ih~m~~l~~~~~~p------- 78 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL-----NHPRIRIHGMPNLPFLQGGP------- 78 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh-----cCCceEEEeCCCCcccCCCc-------
Confidence 7899999999999999999999999999999999976433211 1111 13579999887443211111
Q ss_pred CCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC-CCcchHHHHH----HcCCCcEEEecchHH
Q 011490 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV-CLPWTVSSAC----KFNVPRIVFHGFSCF 152 (484)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~~a~~~A~----~lgIP~v~~~~~~~~ 152 (484)
..+......+-+....+-.++.- .++|.+++-. -+.....+|. ..|...++=+....+
T Consensus 79 -----~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 79 -----RVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 11222222222233333344434 7899888765 3333444443 346666664444333
No 150
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.33 E-value=1.8 Score=44.02 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=66.5
Q ss_pred eeCcCChhh---hcCCCCcccccc---ccchh-hHHHHHHcCCC----EeccccccchhhHHHHHHHHhcceeEeccCCC
Q 011490 344 IRGWAPQVV---ILSHPAIGGFLT---HCGWN-SVLEAVSNGLP----MVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 412 (484)
Q Consensus 344 ~~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~ 412 (484)
+.+.+++.+ ++..+++ ++. +=|+| ++.||+++|+| +|+--+.+ .+..+ +-|+.+++.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP~-- 407 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNPY-- 407 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECCC--
Confidence 344566544 5778888 775 44655 77799999999 65554443 22222 346777654
Q ss_pred CCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 413 PSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
+.++++++|.++++++.+ +.+++.+++.+.+. .-+...-++++++++.
T Consensus 408 -------------d~~~lA~aI~~aL~~~~~--er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 -------------DIDGMADAIARALTMPLE--EREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred -------------CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 889999999999986521 34444444545433 3566666777776653
No 151
>PLN02939 transferase, transferring glycosyl groups
Probab=91.31 E-value=6 Score=43.50 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCCeEeeCcCChh---hhcCCCCcccccccc---c-hhhHHHHHHcCCCEecccccc--chhhH--HHHHHHHhcceeEe
Q 011490 339 GRGLLIRGWAPQV---VILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFA--DQFCN--EKLVVQVLRIGVTI 407 (484)
Q Consensus 339 ~~nv~~~~~~pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~~~e~~G~g~~l 407 (484)
.++|.+..+.+.. .++..+++ ||.-. | -.+.+||+++|+|.|+....+ |.... ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578887888754 47888888 88532 2 247899999999999876544 22111 11110122456666
Q ss_pred ccCCCCCCcccccCCCccCHHHHHHHHHHHhc
Q 011490 408 GAERPPSLADEERNGVPVKKEDVKKAINMLMD 439 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 439 (484)
+. .+++.+.++|.+++.
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 43 378888888888764
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.21 E-value=2.6 Score=43.58 Aligned_cols=93 Identities=11% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCeEeeCcCC--h-hhhcCCCCcccccccc---chhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCC
Q 011490 340 RGLLIRGWAP--Q-VVILSHPAIGGFLTHC---GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 413 (484)
Q Consensus 340 ~nv~~~~~~p--q-~~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~ 413 (484)
..|.+.++.. + ..++....+ +|.=+ |.++.+||+++|+|+| .......| +...=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 4677777777 3 447777777 88766 6789999999999999 22233344 344445444 2
Q ss_pred CCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 011490 414 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAK 459 (484)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~ 459 (484)
+..+|.++|..+|.+++.-+.+...+-+.+++..
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999988666667667766666655
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.72 E-value=4.1 Score=32.70 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
||++.+.++-.|.....-++..|.++|++|++.......+.+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~ 46 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA 46 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999999999999998887654444444443
No 154
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=90.17 E-value=3.6 Score=39.43 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=87.1
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHh---CCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEe-eCcCC---hhhh
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEA---TKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLI-RGWAP---QVVI 353 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~-~~~~p---q~~l 353 (484)
.+.|-.|..+..+++.+.. ++++.+ .+.++++=.+-+.......+- +-..-.+.....++.+ .+++| +..+
T Consensus 185 ~ltILvGNSgd~sNnHiea-L~~L~~~~~~~~kIivPLsYg~~n~~Yi~~-V~~~~~~lF~~~~~~iL~e~mpf~eYl~l 262 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEA-LEALKQQFGDDVKIIVPLSYGANNQAYIQQ-VIQAGKELFGAENFQILTEFMPFDEYLAL 262 (360)
T ss_pred ceEEEEcCCCCCCccHHHH-HHHHHHhcCCCeEEEEECCCCCchHHHHHH-HHHHHHHhcCccceeEhhhhCCHHHHHHH
Confidence 4666677777666554433 333432 346666655443211101000 1111112233457754 57888 6779
Q ss_pred cCCCCccccccc--cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 354 LSHPAIGGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 354 l~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
|..|+++.|.|. =|.|++.-.+..|+|.+.- .+-+.|-... +.|+-+-...+ .++...|+
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~--~~~ipVlf~~d-------------~L~~~~v~ 324 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK--EQGIPVLFYGD-------------ELDEALVR 324 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH--hCCCeEEeccc-------------cCCHHHHH
Confidence 999999777764 5899999999999999875 5556666554 55766665555 69999999
Q ss_pred HHHHHHhc
Q 011490 432 KAINMLMD 439 (484)
Q Consensus 432 ~ai~~vl~ 439 (484)
++=+.+.+
T Consensus 325 ea~rql~~ 332 (360)
T PF07429_consen 325 EAQRQLAN 332 (360)
T ss_pred HHHHHHhh
Confidence 99888764
No 155
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.85 E-value=8.7 Score=38.84 Aligned_cols=125 Identities=11% Similarity=0.064 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeC-cCC--hhhh
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLEAT-KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRG-WAP--QVVI 353 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~-~~p--q~~l 353 (484)
++.++++| ..+.++.+....+.. +..|=+..+.. ....+......+|+++.. +.+ -.++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y~nvvly~~~~~~~l~~l 344 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKYDNVKLYPNITTQKIQEL 344 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhcCCcEEECCcChHHHHHH
Confidence 34477776 145555555555554 45554433222 111121111236766665 466 3669
Q ss_pred cCCCCccccccccc--hhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 354 LSHPAIGGFLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 354 l~~~~~~~~I~HgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
+..|++-+-|+||. ..++.||+.+|+|++..=..... ...+. . |-..... +.+++.
T Consensus 345 y~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~-~---g~l~~~~---------------~~~~m~ 402 (438)
T TIGR02919 345 YQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIA-S---ENIFEHN---------------EVDQLI 402 (438)
T ss_pred HHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---ccccc-C---CceecCC---------------CHHHHH
Confidence 99999988899977 57999999999999998544322 22331 3 4444433 689999
Q ss_pred HHHHHHhcCC
Q 011490 432 KAINMLMDEG 441 (484)
Q Consensus 432 ~ai~~vl~~~ 441 (484)
++|.++|.|+
T Consensus 403 ~~i~~lL~d~ 412 (438)
T TIGR02919 403 SKLKDLLNDP 412 (438)
T ss_pred HHHHHHhcCH
Confidence 9999999987
No 156
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.77 E-value=4.6 Score=37.32 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=31.7
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 4 QAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 4 ~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
+++ +||||+..=-+. |---+.+|+++|.+.| +|+++.|.....
T Consensus 2 ~~~-~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 2 QDK-KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCC-CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 456 899998875444 3346778999999888 799998875544
No 157
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.59 E-value=1.1 Score=37.26 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
+.||++.+.++-+|-.-..-++..|.++|++|++.....-.+.+.+..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a 50 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA 50 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 789999999999999999999999999999999998765555554443
No 158
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.45 E-value=6.7 Score=37.10 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEEecCCCccCCHHHHHHHHHHHH-hC--CCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeE-eeCcCC---hhhhc
Q 011490 282 VYVCLGSLCDSSTRQLIELGLGLE-AT--KKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLL-IRGWAP---QVVIL 354 (484)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~-~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~-~~~~~p---q~~ll 354 (484)
+-|-.|..+..+++.+. +++++. .. +.+++.-.+-........+= +-..-.+....+++. +.+++| +..+|
T Consensus 147 ~tIlvGNSgd~SN~Hie-~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~-V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGDRSNRHIE-ALRALHQQFGDNVKIIVPMGYPANNQAYIEE-VRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCCCcccHHH-HHHHHHHHhCCCeEEEEECCcCCCCHHHHHH-HHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 55566777765655443 444443 23 44666555442111100000 111111223335655 455777 67899
Q ss_pred CCCCccccccc--cchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 355 SHPAIGGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 355 ~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
++|+++.|+|+ =|.|++.-.++.|+|.+.- .+-+.|.... +.|+-+-.+.+ .++...+.+
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~d-------------~L~~~~v~e 286 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTGD-------------DLDEDIVRE 286 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecCC-------------cccHHHHHH
Confidence 99999888876 4899999999999999876 4556666643 56777666666 688888888
Q ss_pred HHHHHh
Q 011490 433 AINMLM 438 (484)
Q Consensus 433 ai~~vl 438 (484)
+=+++.
T Consensus 287 ~~rql~ 292 (322)
T PRK02797 287 AQRQLA 292 (322)
T ss_pred HHHHHH
Confidence 755544
No 159
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.05 E-value=3.2 Score=38.03 Aligned_cols=114 Identities=21% Similarity=0.250 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
||||+..=-+. |---+.+|+++|+ .+++|+++++...+.-+...+.- .-.++...+. ........
T Consensus 1 mrILlTNDDGi-~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl----~~Plr~~~~~---------~~~~av~G 65 (252)
T COG0496 1 MRILLTNDDGI-HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTL----HEPLRVRQVD---------NGAYAVNG 65 (252)
T ss_pred CeEEEecCCcc-CCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccc----ccCceeeEec---------cceEEecC
Confidence 35555544332 4445677888888 99999999988655422222100 0012221111 10000010
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC-------------CCcchHHHHHHcCCCcEEEecch
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV-------------CLPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-------------~~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
.+ .+-..-.+..++++ ..||+||+-. -+.+|+.=|..+|||.|.++...
T Consensus 66 TP-----------aDCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 66 TP-----------ADCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred Ch-----------HHHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 01 01112245666666 5699999643 12456677888999999976653
No 160
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.47 E-value=2.9 Score=39.03 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=48.6
Q ss_pred hhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchh--hHHHHHHHHhcceeEeccCCCCCCcccccCCCccCH
Q 011490 350 QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF--CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKK 427 (484)
Q Consensus 350 q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~--~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~ 427 (484)
..++|.++++ .|--.|- .+-.++--|+|+|.+|-.+-|+ ..|.|=..-+|+.+.+-.. .+
T Consensus 305 fadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~---------------~a 366 (412)
T COG4370 305 FADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP---------------EA 366 (412)
T ss_pred HHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---------------ch
Confidence 3445544444 3333321 2234577899999999999984 4666543456777777544 23
Q ss_pred HHHHHHHHHHhcCChhHHHHH
Q 011490 428 EDVKKAINMLMDEGEERDERR 448 (484)
Q Consensus 428 ~~l~~ai~~vl~~~~~~~~~r 448 (484)
..-..+.++++.|+++...+|
T Consensus 367 q~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 367 QAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred hhHHHHHHHHhcChHHHHHHH
Confidence 333334445999996555555
No 161
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.12 E-value=30 Score=32.52 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=53.9
Q ss_pred CCCeEeeCcCC---hhhhcCCCCccccccc---cchhh-HHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 339 GRGLLIRGWAP---QVVILSHPAIGGFLTH---CGWNS-VLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 339 ~~nv~~~~~~p---q~~ll~~~~~~~~I~H---gG~~s-~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
..++...++++ ...++..+++ ++.. .|.|. +.||+++|+|+|.... ......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC-
Confidence 46788889988 3346776776 6666 35543 5999999999966543 3333333 2332465 4333
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
.+.+++.+++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 26899999999999876
No 162
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.10 E-value=3.1 Score=42.47 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=48.1
Q ss_pred eeCcCChhh---hcCCCCcccccc---ccchh-hHHHHHHcCCC----EeccccccchhhHHHHHHHHhcceeEeccCCC
Q 011490 344 IRGWAPQVV---ILSHPAIGGFLT---HCGWN-SVLEAVSNGLP----MVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 412 (484)
Q Consensus 344 ~~~~~pq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~ 412 (484)
+.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+--+.+ .+ +...-|+.++..
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~----~~~~~g~lv~p~-- 412 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AA----EELSGALLVNPY-- 412 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----ch----hhcCCCEEECCC--
Confidence 446777654 5788888 763 44655 67899999999 44432221 11 122235666544
Q ss_pred CCCcccccCCCccCHHHHHHHHHHHhcCC
Q 011490 413 PSLADEERNGVPVKKEDVKKAINMLMDEG 441 (484)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 441 (484)
+.++++++|.++++++
T Consensus 413 -------------d~~~la~ai~~~l~~~ 428 (460)
T cd03788 413 -------------DIDEVADAIHRALTMP 428 (460)
T ss_pred -------------CHHHHHHHHHHHHcCC
Confidence 7899999999999876
No 163
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=83.79 E-value=4 Score=32.72 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~ 56 (484)
.|+++.+.+..-|-.-+..|+..|.++||+|.++......+.+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~ 48 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR 48 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh
Confidence 479999999999999999999999999999999966554455544443
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.75 E-value=1.7 Score=34.92 Aligned_cols=38 Identities=5% Similarity=-0.118 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCC---CHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 9 LHFILFPFLAQG---HMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 9 ~kil~~~~~~~G---Hv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
+||+|+.-|-.+ .-.-.++|+.+-++|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 578888777543 34568899999999999999998653
No 165
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=83.66 E-value=1.3 Score=36.31 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
+||++...|+.+=+. ...+.++|+++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 488998888877666 999999999999999999998766655555
No 166
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=82.80 E-value=15 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
.+.+ +++|+|- +++.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555 8888774 578899999999999963
No 167
>PRK06849 hypothetical protein; Provisional
Probab=80.61 E-value=14 Score=36.86 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
+++|+++-. ...-.+.+|+.|.++||+|+.+....
T Consensus 4 ~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGA----RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 677888753 33368999999999999999997653
No 168
>PRK12342 hypothetical protein; Provisional
Probab=80.04 E-value=35 Score=31.65 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC-cc-----hHHHHHHcCCCcEEEec
Q 011490 107 LPLETLFKEIQPKPSCLISDVCL-PW-----TVSSACKFNVPRIVFHG 148 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~-~~-----a~~~A~~lgIP~v~~~~ 148 (484)
..|...++. .+||+|++...+ .. +..+|+.||+|++++..
T Consensus 99 ~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 99 KALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 344556666 579999976533 23 78999999999998644
No 169
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.00 E-value=9.5 Score=41.83 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=59.3
Q ss_pred hhhcCCCCccccccc---cchh-hHHHHHHcCCC---EeccccccchhhHHHHHHHHhc-ceeEeccCCCCCCcccccCC
Q 011490 351 VVILSHPAIGGFLTH---CGWN-SVLEAVSNGLP---MVTWPFFADQFCNEKLVVQVLR-IGVTIGAERPPSLADEERNG 422 (484)
Q Consensus 351 ~~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G-~g~~l~~~~~~~~~~~~~~~ 422 (484)
..++..+++ ||.- -|+| +..|++++|.| ++++. +--..+ +.+| -|+.+++.
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~----~~l~~~allVnP~------------ 428 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAG----QSLGAGALLVNPW------------ 428 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCch----hhhcCCeEEECCC------------
Confidence 357778888 7744 4877 66699999999 44443 222222 2344 46777654
Q ss_pred CccCHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 423 VPVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 423 ~~~~~~~l~~ai~~vl~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
+.++++++|.++|+ +++ +-+++.+++.+..+ .-+...-.++|++.+.+
T Consensus 429 ---D~~~lA~AI~~aL~m~~~---er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 429 ---NITEVSSAIKEALNMSDE---ERETRHRHNFQYVK-----THSAQKWADDFMSELND 477 (797)
T ss_pred ---CHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHH
Confidence 88999999999998 432 22233333433333 33444555566655543
No 170
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=79.69 E-value=16 Score=33.24 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCCCeEEE-ecCCC-cchHHHHHHcCCCcEEEecch
Q 011490 117 QPKPSCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 117 ~~~~D~vI-~D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..-||+++ .|+.. --|..=|.++|||+|.++-+.
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 34499765 67754 467788999999999975553
No 171
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=79.66 E-value=2 Score=33.00 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHHHHHHH
Q 011490 25 MIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEM 104 (484)
Q Consensus 25 ~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (484)
++.+|+.|++.|+++ ++++...+.+++. ++....+.... +.++.. ....
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~---~~~~~~-------~g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKI---GEGESP-------DGRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEH---STG-GG-------THCH----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeec---ccCccC-------Cchh----------
Confidence 578999999999765 4456555556554 56644331000 000000 0000
Q ss_pred chHHHHHHHHhcCCCCeEEEecCCCcc---------hHHHHHHcCCCcE
Q 011490 105 LRLPLETLFKEIQPKPSCLISDVCLPW---------TVSSACKFNVPRI 144 (484)
Q Consensus 105 ~~~~l~~~l~~~~~~~D~vI~D~~~~~---------a~~~A~~lgIP~v 144 (484)
.+.+++++ .++|+||....-.. -..+|...+||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 56777888 89999998774321 1357788888876
No 172
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.09 E-value=16 Score=39.79 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=64.1
Q ss_pred EeeCcCChhh---hcCCCCccccccc---cchh-hHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCC
Q 011490 343 LIRGWAPQVV---ILSHPAIGGFLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSL 415 (484)
Q Consensus 343 ~~~~~~pq~~---ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~ 415 (484)
++.+++++.+ ++..+++ ++.- -|+| ++.|++++|+|-..+|...+--.-+. .+.-|+.+++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~P~----- 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVNPN----- 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEECCC-----
Confidence 4556777654 6778887 6653 3554 77899999776333333232222222 22237777654
Q ss_pred cccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 416 ADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 416 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
+.++++++|.++++++.+ +.+++.+++.+.++ .-+...-++++++.+.+
T Consensus 414 ----------d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 414 ----------DIEGIAAAIKRALEMPEE--EQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred ----------CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 799999999999986521 22233333333322 34555666666666654
No 173
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.19 E-value=6.9 Score=34.87 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
+.||++.+.++-.|-....-++..|.++|++|+++....-.+.+.+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~ 129 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV 129 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 579999999999999999999999999999999887654444444443
No 174
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.90 E-value=5.4 Score=29.45 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
.-++++..+...|...+-.+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5799999999999999999999999999999876
No 175
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=76.01 E-value=39 Score=31.11 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
|||+.-=-+. |---+.+|+++|++.| +|+++.+.....
T Consensus 2 ~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 2 KILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred eEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 5555543222 3345678999999998 899999876544
No 176
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.74 E-value=56 Score=28.78 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC---C--CchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT---P--MNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEG 82 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~---~--~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 82 (484)
+-.|.+++.++.|-....+.+|-+.+.+|+.|.++=- . ..+..+-+. ..++++...+... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~-------l~~v~~~~~g~~~-------~ 87 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF-------GGGVEFHVMGTGF-------T 87 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc-------CCCcEEEECCCCC-------c
Confidence 5689999999999999999999999999999998832 1 111111111 1257777644210 0
Q ss_pred CCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc
Q 011490 83 CESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLP 130 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 130 (484)
+. . .. ...-...........++.+.+ .++|+||.|-...
T Consensus 88 ~~--~--~~---~~e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 88 WE--T--QD---RERDIAAAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred cc--C--CC---cHHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11 1 11 111122333445555666666 8999999999753
No 177
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=75.69 E-value=8.7 Score=39.86 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=47.6
Q ss_pred hhhhcCCCCcccccc---ccchh-hHHHHHHcCCCEeccccccchhhHHHHHHHHh-cceeEeccCCCCCCcccccCCCc
Q 011490 350 QVVILSHPAIGGFLT---HCGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL-RIGVTIGAERPPSLADEERNGVP 424 (484)
Q Consensus 350 q~~ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~-G~g~~l~~~~~~~~~~~~~~~~~ 424 (484)
..+++..|++ +|. +=|+| +++||+++|+|+|+....+=- .+...+...- ..|+.+...+ ..+-.
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~--------~~~~~ 536 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRR--------FKSPD 536 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCC--------ccchH
Confidence 5667777787 665 34544 899999999999998664311 1112121111 2566665331 00112
Q ss_pred cCHHHHHHHHHHHhcC
Q 011490 425 VKKEDVKKAINMLMDE 440 (484)
Q Consensus 425 ~~~~~l~~ai~~vl~~ 440 (484)
-+.++|++++.++++.
T Consensus 537 e~v~~La~~m~~~~~~ 552 (590)
T cd03793 537 ESVQQLTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4567888888888853
No 178
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=75.09 E-value=40 Score=31.23 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
||||+.-=-+. |---+.+|+++|++ +|+|+++.|.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 35665543332 22337889999975 68999999876544
No 179
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=74.73 E-value=8.9 Score=35.39 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
||||+..=-+. |---+.+|+++|++ +|+|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 35666554333 33447788889875 68999999875544
No 180
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=74.26 E-value=8.5 Score=31.92 Aligned_cols=44 Identities=20% Similarity=0.079 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhh
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v 51 (484)
|+||++.+.+..||=.-.--+++.|+..|.+|.....-..-+++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 89999999999999999999999999999999998764443433
No 181
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=73.73 E-value=5.8 Score=35.06 Aligned_cols=42 Identities=12% Similarity=-0.080 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
.+||++...|+.|=+.-...|.++|.++||+|.++.++...+
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 468888888876555547999999999999999999886544
No 182
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=73.18 E-value=38 Score=31.28 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
|||+.-=-+. |---+.+|+++|++. |+|+++.+.....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 5555543333 334477899999998 7999999875444
No 183
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=73.02 E-value=25 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCeEEEecCC---------CcchHHHHHHcCCCcE
Q 011490 109 LETLFKEIQPKPSCLISDVC---------LPWTVSSACKFNVPRI 144 (484)
Q Consensus 109 l~~~l~~~~~~~D~vI~D~~---------~~~a~~~A~~lgIP~v 144 (484)
+.+.++. .++|+||.... ......+|...+||++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5667777 89999998542 1123457888899986
No 184
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=72.37 E-value=10 Score=33.67 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHh
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~ 56 (484)
+.||++.+.++-.|-....-++..|.++|++|++++...-.+.+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~ 132 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK 132 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999987665555555543
No 185
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=72.35 E-value=83 Score=29.19 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=56.0
Q ss_pred EEEEecCCCcc--CCHHHHHH----HHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEe-----eCcCC
Q 011490 281 AVYVCLGSLCD--SSTRQLIE----LGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLI-----RGWAP 349 (484)
Q Consensus 281 ~V~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~-----~~~~p 349 (484)
|.++-.|+... ...++... +.+.+++.|..|+.+...... +... .-+........+++ .++=|
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp-~~~~-----s~l~~~l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTP-DTVK-----SILKNNLNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCc-HHHH-----HHHHhccccCceeEeCCCCCCCCc
Confidence 55555666555 33444333 556667789999998876531 1111 11111111112222 24558
Q ss_pred hhhhcCCCCccccccccchhhHHHHHHcCCCEecc
Q 011490 350 QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW 384 (484)
Q Consensus 350 q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 384 (484)
+.+.|+.++. .++|--..|-..||++.|+|+-++
T Consensus 238 Y~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 238 YIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred hHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 9999987776 244555567788999999997654
No 186
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=72.05 E-value=36 Score=29.03 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.0
Q ss_pred cccccc------hhhHHHHHHcCCCEecccc
Q 011490 362 FLTHCG------WNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 362 ~I~HgG------~~s~~eal~~GvP~l~~P~ 386 (484)
+++|.| .+++.+|...++|+|++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 666666 3578899999999999964
No 187
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=71.75 E-value=36 Score=29.14 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
++.+ +++|+|- +++.||...++|+|++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 4555 7788774 578899999999999953
No 188
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=71.74 E-value=11 Score=32.39 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=29.2
Q ss_pred HchHHHHHHHHhcCCCCeEEEecCCCcchH-H--H-HHH-c-CCCcEEEec
Q 011490 104 MLRLPLETLFKEIQPKPSCLISDVCLPWTV-S--S-ACK-F-NVPRIVFHG 148 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~-~--~-A~~-l-gIP~v~~~~ 148 (484)
...+.+.+++++ .+||+||+.+.+.... . + .+. + ++|.+++.|
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 455688889999 9999999999764333 1 1 122 4 578776544
No 189
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.44 E-value=16 Score=34.01 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCeEEEecCCC------cchHHHHHHcCCCcEEE
Q 011490 109 LETLFKEIQPKPSCLISDVCL------PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 109 l~~~l~~~~~~~D~vI~D~~~------~~a~~~A~~lgIP~v~~ 146 (484)
+.+++++ .++|+||--..- --+..+|+.+|||++.|
T Consensus 57 l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 57 LREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 5677777 899988833321 23567899999999996
No 190
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=70.89 E-value=1.1e+02 Score=31.57 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=71.0
Q ss_pred eEeeCcCChhh---hcCCCCcccccc--ccchhhHH-HHHHcCC----CEeccccccchhhHHHHHHHHhcceeEeccCC
Q 011490 342 LLIRGWAPQVV---ILSHPAIGGFLT--HCGWNSVL-EAVSNGL----PMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 411 (484)
Q Consensus 342 v~~~~~~pq~~---ll~~~~~~~~I~--HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~ 411 (484)
+++.+.+|+.+ ++..+++ ++|| .-|+|-+. |.++++. |+|+=-+. -|. +.+.-++.+++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllVNP~- 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLTNPY- 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEECCC-
Confidence 46667788655 5667777 3333 45898665 9999977 43332221 121 255557888754
Q ss_pred CCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhc
Q 011490 412 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 483 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 483 (484)
+.++++++|.+.|+.+.+ +-+++.+++.+.++ .-....=.+.|++++..+|
T Consensus 434 --------------d~~~~A~ai~~AL~m~~~--Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 434 --------------DPVRMDETIYVALAMPKA--EQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQA 484 (487)
T ss_pred --------------CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhcc
Confidence 899999999999987632 33455555555554 3455566778888887665
No 191
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.71 E-value=25 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred CeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccc
Q 011490 341 GLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 341 nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 385 (484)
.+.+.+-++-.+++.+++. +||-.+ .+-.||+.+|+|++++.
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEec
Confidence 3445566778899999998 887765 47789999999999974
No 192
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=68.65 E-value=22 Score=31.25 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=49.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCC-chhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPM-NAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+++-+-..+-|-++-...|+++|.++ |+.|.+-++.. ..+.+.+.... .+....+|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~------~v~~~~~P~-------------- 81 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD------RVDVQYLPL-------------- 81 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG------G-SEEE-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC------CeEEEEeCc--------------
Confidence 45555567889999999999999998 89988887643 33334333211 122222331
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchH--HHHHHcCCCcEEEec
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTV--SSACKFNVPRIVFHG 148 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~--~~A~~lgIP~v~~~~ 148 (484)
+. ...++.+++. ++||++|.--.-.|.. ..|++.|||.+.+..
T Consensus 82 ------D~-----------~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 82 ------DF-----------PWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------SS-----------HHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------cC-----------HHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11 1123566777 8999887655444443 467778999998643
No 193
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.56 E-value=16 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
||++.+.++-.|..-..-++.-|+..|++|.+.....-.+.+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~ 45 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEA 45 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 589999999999999999999999999999999875444444333
No 194
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=67.94 E-value=14 Score=33.22 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
+.||++.+.++-.|-....-++..|..+|++|++++...-.+.+.+..
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 679999999999999999999999999999999998755444444443
No 195
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=67.54 E-value=22 Score=33.58 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
...|.+.-.|+.|--.=.=.|+++|.++||.|-++.-.+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 567889999999999999999999999999999997543
No 196
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=67.45 E-value=49 Score=32.07 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=59.9
Q ss_pred cEEEEEcCCCC-----CCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 9 LHFILFPFLAQ-----GHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 9 ~kil~~~~~~~-----GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
+.|+|.+.-+. --..-+..|++.|.++|.+|.++.++...+..++.... +... ..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~~~------------~~- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LPNA------------VI- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cCCc------------cc-
Confidence 46677666233 13557899999999999999998887433433333210 1000 00
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecch
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
+.. .....++..++ ...|++|+--. +...+|..+|.|+|.++...
T Consensus 236 -----l~~-----------k~sL~e~~~li----~~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 -----LAG-----------KTSLEELAALI----AGADLVIGNDS--GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -----cCC-----------CCCHHHHHHHH----hcCCEEEccCC--hHHHHHHHcCCCEEEEECCC
Confidence 000 01122234444 36888886554 57899999999999986543
No 197
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.31 E-value=70 Score=28.05 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCCHHHHH-HHHHHHHHCCCeEEEEeCCCch
Q 011490 19 QGHMIPMI-DIARLLAQHGALVTIVTTPMNA 48 (484)
Q Consensus 19 ~GHv~P~l-~La~~L~~rGh~V~~~~~~~~~ 48 (484)
+|=+-=++ .|+..|+++||+|++++.....
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 45554443 5788888899999999875443
No 198
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=67.17 E-value=84 Score=29.27 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCeEEEecC----------CC---cchHHHHHHcCCCcEEEec
Q 011490 118 PKPSCLISDV----------CL---PWTVSSACKFNVPRIVFHG 148 (484)
Q Consensus 118 ~~~D~vI~D~----------~~---~~a~~~A~~lgIP~v~~~~ 148 (484)
.+||+||+-. ++ .+|+.-|..+|||.+.++.
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 4899999643 22 3566777889999999875
No 199
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=67.03 E-value=56 Score=25.65 Aligned_cols=84 Identities=21% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHH
Q 011490 20 GHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFF 99 (484)
Q Consensus 20 GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (484)
.+-.-++.+++.|.+.|+++. +++...+.+++. ++....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 466778999999999999984 345444444443 4554443210 00
Q ss_pred HHHHHchHHHHHHHHhcCCCCeEEEecCC-------CcchHHHHHHcCCCcEE
Q 011490 100 AAIEMLRLPLETLFKEIQPKPSCLISDVC-------LPWTVSSACKFNVPRIV 145 (484)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-------~~~a~~~A~~lgIP~v~ 145 (484)
..+.+.+.+++ .++|+||.... .......|-.+|||+++
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12345666777 89999998542 13445678899999986
No 200
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=65.49 E-value=10 Score=33.55 Aligned_cols=121 Identities=18% Similarity=0.151 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
||||+..=-+. +---+..|+++|.+.||+|+++++...+.-....+. ....++......+. ....... ..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~~----~~~~~~~-~~ 70 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPGH----DPGGVEA-YA 70 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-TT----CCSTTEE-EE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEecc----cCCCCCE-EE
Confidence 46777665555 555678999999888999999998766543322211 11124443321000 0111110 00
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC----------C---CcchHHHHHHcCCCcEEEecc
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV----------C---LPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~----------~---~~~a~~~A~~lgIP~v~~~~~ 149 (484)
... .-... ..-.+..++.+ .+||+||+-. + +.+|+..|...|||.+.++..
T Consensus 71 v~G-TPaDc-------v~~al~~~~~~--~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 71 VSG-TPADC-------VKLALDGLLPD--KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp ESS--HHHH-------HHHHHHCTSTT--SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred EcC-cHHHH-------HHHHHHhhhcc--CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 100 11111 11233444444 4699999643 1 135666777889999998654
No 201
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=64.99 E-value=5.5 Score=34.94 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFLAQGHMIP------------MIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P------------~l~La~~L~~rGh~V~~~~~~ 45 (484)
+||++.+.|+.-.+.| -..||+++..|||+|+++..+
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 4677666666555544 478999999999999999987
No 202
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.84 E-value=54 Score=33.18 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
.+.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 368 e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 368 HLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 44666777 79999999885 467899999999875
No 203
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.67 E-value=44 Score=28.53 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
.+||.+.-.|+-|-..-.+.++..|.++|+.|-=+-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 67999999999999999999999999999998755555
No 204
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=64.57 E-value=80 Score=27.44 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCe--EEEE-eCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCc
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGAL--VTIV-TTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCES 85 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~--V~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 85 (484)
|||+|+.+++. ..+..+..+|.+++|+ |..+ +.+........... .++....+.. .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~--------~---- 59 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE--------K---- 59 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG--------G----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc--------c----
Confidence 58999876554 5677778899999997 4444 44333222222211 1122221110 0
Q ss_pred cCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-cchHHHHHHcCCCcEEEec
Q 011490 86 WDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCL-PWTVSSACKFNVPRIVFHG 148 (484)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~a~~~A~~lgIP~v~~~~ 148 (484)
. ........+.+.+.+++ .+||++|+-.+. .-...+-......++-+++
T Consensus 60 -------~-----~~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 60 -------N-----FQPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp -------G-----SSSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred -------C-----CCchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 0 00011233456777888 899999887753 3333444555555565433
No 205
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=64.08 E-value=5.7 Score=39.16 Aligned_cols=116 Identities=11% Similarity=0.186 Sum_probs=65.9
Q ss_pred CCCeEeeC-cCChhhhcCCCCccccccccchhhHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcc
Q 011490 339 GRGLLIRG-WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLAD 417 (484)
Q Consensus 339 ~~nv~~~~-~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~ 417 (484)
..+++..+ ..+..++|..+++ +||--. +.+.|.++.+.|++....-.|... +.. |...+..+ ...
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~------~~r--g~~~~~~~---~~p 316 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYE------KER--GFYFDYEE---DLP 316 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTT------TTS--SBSS-TTT---SSS
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHh------hcc--CCCCchHh---hCC
Confidence 45666544 4467889999999 999984 588999999999998766555542 122 33333210 000
Q ss_pred cccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 011490 418 EERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLL 475 (484)
Q Consensus 418 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~ 475 (484)
. ...-+.++|.++|..++++++ .++++.+++.+++-.. ..|.++.+.++.+
T Consensus 317 g---~~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I 367 (369)
T PF04464_consen 317 G---PIVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFKY-NDGNSSERIVNYI 367 (369)
T ss_dssp S----EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHSTT---S-HHHHHHHHH
T ss_pred C---ceeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCCC-CCchHHHHHHHHH
Confidence 0 113578999999999887652 4556666677776543 4565554444433
No 206
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.74 E-value=41 Score=29.94 Aligned_cols=146 Identities=11% Similarity=0.084 Sum_probs=74.3
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCC
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPA 358 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~ 358 (484)
+.++.|+.|.++ ...++.|...+..+.++. +. +.+.+........+.......+..-+..++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 458888888665 334455556676665553 32 111222222233455544444455677777
Q ss_pred ccccccccchhhHHHHHH----cCCCEeccccccchhhH-----HHHHHHHhcceeEeccCCCCCCcccccCCCccCHHH
Q 011490 359 IGGFLTHCGWNSVLEAVS----NGLPMVTWPFFADQFCN-----EKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKED 429 (484)
Q Consensus 359 ~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~n-----a~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
+ +|.--+.-.+.+.++ .+++.-+ .|.+.. -..+ ++-++-+.+... + ....-+..
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G-~sP~la~~ 135 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------G-ASPKLAKK 135 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------C-CChHHHHH
Confidence 7 888777655554443 4555433 344332 2233 233333333332 1 11233456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011490 430 VKKAINMLMDEGEERDERRRRAREYGETAKTA 461 (484)
Q Consensus 430 l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~ 461 (484)
|++.|..++ ++....+-+...++++.+++.
T Consensus 136 lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 136 IRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 777777777 333334555666666666543
No 207
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=63.63 E-value=1.4e+02 Score=28.67 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCC-----CHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 9 LHFILFPFLAQG-----HMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 9 ~kil~~~~~~~G-----Hv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
.-|+|.+..+.| ...-+..|++.|.++|++|.+.+++...+..+...+.. + -.... +..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~---~--~~~~~---------l~g-- 238 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL---P--GELRN---------LAG-- 238 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC---C--ccccc---------CCC--
Confidence 345555543333 23468899999999999999888776554443331100 0 00000 000
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
......+..+++ +.|++|+.-. +...+|..+|+|+|.++..
T Consensus 239 -------------------~~sL~el~ali~----~a~l~I~~DS--Gp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 239 -------------------ETSLDEAVDLIA----LAKAVVTNDS--GLMHVAAALNRPLVALYGS 279 (334)
T ss_pred -------------------CCCHHHHHHHHH----hCCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 011223345554 5899997665 5788999999999997553
No 208
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=63.43 E-value=14 Score=33.88 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCcEEEEecCCCcc---CCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC---hh
Q 011490 278 PGSAVYVCLGSLCD---SSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP---QV 351 (484)
Q Consensus 278 ~~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p---q~ 351 (484)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..++.+.. .+ ..+.+........+.+.+-.. ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE---KE--IADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH---HH--HHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH---HH--HHHHHHHhcccceEeecCCCCHHHHH
Confidence 34577777777554 457888999999988776766555443210 01 111111111112333433333 34
Q ss_pred hhcCCCCccccccccchhhHHHHHHcCCCEecc
Q 011490 352 VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW 384 (484)
Q Consensus 352 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 384 (484)
.++.++++ +|+.-. |.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEESS-HHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEecCC-hHHHHHHHHhCCEEEE
Confidence 68889998 887654 7888899999999998
No 209
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=63.40 E-value=28 Score=33.47 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCCeEEE-ecCC-CcchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLI-SDVC-LPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI-~D~~-~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+|| .|.. ...+..=|.++|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 4799877 4553 3578889999999999975544
No 210
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.08 E-value=61 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.4
Q ss_pred HHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 111 TLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 111 ~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
+.+++ .+||++|..+. +..+|+++|||.+.+
T Consensus 344 ~~~~~--~~pDl~Ig~s~---~~~~a~~~giP~~r~ 374 (416)
T cd01980 344 AAVEE--YRPDLAIGTTP---LVQYAKEKGIPALYY 374 (416)
T ss_pred HHHhh--cCCCEEEeCCh---hhHHHHHhCCCEEEe
Confidence 34455 69999998843 566899999999885
No 211
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.08 E-value=87 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|+.++..+.. .+.+++.|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6777776555 888999999999999988665
No 212
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=62.85 E-value=76 Score=25.18 Aligned_cols=87 Identities=22% Similarity=0.154 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHHH
Q 011490 21 HMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFA 100 (484)
Q Consensus 21 Hv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (484)
+-.-++.+++.|.+.|++|. +++...+.+.+. ++....+.. ..+. ...+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~~-------~~~~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSEE-------PQND------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccCC-------CCCC-------
Confidence 55678899999999999984 455444444443 344333210 1000 0000
Q ss_pred HHHHchHHHHHHHHhcCCCCeEEEecCC---------CcchHHHHHHcCCCcEE
Q 011490 101 AIEMLRLPLETLFKEIQPKPSCLISDVC---------LPWTVSSACKFNVPRIV 145 (484)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~---------~~~a~~~A~~lgIP~v~ 145 (484)
.+.+.+++++ .++|+||.-+. .......|-.+|||+++
T Consensus 60 -----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1456777777 89999998442 13345678899999974
No 213
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.64 E-value=70 Score=28.57 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=72.3
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCC
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPA 358 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~ 358 (484)
++++.|+.|..+ ..-+..|.+.|..+.++.. .. .+.+.+.....++....--.+...+..+.
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~~----------~~~l~~l~~~~~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-EL----------ESELTLLAEQGGITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-CC----------CHHHHHHHHcCCEEEEeCCCCHHHhCCcE
Confidence 358888888655 2334555567777665543 21 11222222233555433223344566677
Q ss_pred ccccccccchhhHH-----HHHHcCCCEecc--ccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHH
Q 011490 359 IGGFLTHCGWNSVL-----EAVSNGLPMVTW--PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 431 (484)
Q Consensus 359 ~~~~I~HgG~~s~~-----eal~~GvP~l~~--P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~ 431 (484)
+ +|..-|...+. +|-..|+|+-++ |-..| +.+-..+ ++-++-+.+... +++ ..-+..|+
T Consensus 72 l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~---------G~s-P~la~~lr 137 (205)
T TIGR01470 72 L--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG---------GAA-PVLARLLR 137 (205)
T ss_pred E--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC---------CCC-cHHHHHHH
Confidence 6 88877765333 444578888433 33223 2222233 232333333322 011 23345677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011490 432 KAINMLMDEGEERDERRRRAREYGETAKT 460 (484)
Q Consensus 432 ~ai~~vl~~~~~~~~~r~~a~~l~~~~~~ 460 (484)
+.|.+++. +++ ..+-+...++++.+++
T Consensus 138 ~~ie~~l~-~~~-~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 138 ERIETLLP-PSL-GDLATLAATWRDAVKK 164 (205)
T ss_pred HHHHHhcc-hhH-HHHHHHHHHHHHHHHh
Confidence 77777774 222 2344445555555443
No 214
>PRK10490 sensor protein KdpD; Provisional
Probab=62.43 E-value=15 Score=41.02 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
++||-+=..|+-|-.+-|+.-|++|+++|++|.+-.-+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 7999999999999999999999999999999988765443
No 215
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=62.29 E-value=9.7 Score=33.31 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
||++...++.|=+. ...+.+.|+++|++|.++.++...+.+.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 78888888776665 8999999999999999999887655554
No 216
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=61.80 E-value=55 Score=29.52 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=33.0
Q ss_pred EEEEEcCC--CCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 10 HFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 10 kil~~~~~--~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
+|++++++ +-|-..-.-+|+-+|+++|+.|.++-..-.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 58888887 779999999999999999999999966543
No 217
>PRK06321 replicative DNA helicase; Provisional
Probab=61.72 E-value=85 Score=32.16 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCchhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARF 51 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~-rGh~V~~~~~~~~~~~v 51 (484)
|++..-|+.|-..-.+.+|...+. .|+.|.|++-+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 677788899999999999999874 59999999887765543
No 218
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=61.62 E-value=1.1e+02 Score=31.50 Aligned_cols=48 Identities=4% Similarity=-0.061 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~ 56 (484)
.-+++.-.|+.|-..=.+.++.+.+++|..|.+++.+...+.+.+..+
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~ 311 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY 311 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH
Confidence 346777777999999999999999999999999998877666655544
No 219
>PLN02470 acetolactate synthase
Probab=61.51 E-value=47 Score=35.14 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred ecCCCccCCH--HHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeC--c------CC--hhh
Q 011490 285 CLGSLCDSST--RQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRG--W------AP--QVV 352 (484)
Q Consensus 285 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~--~------~p--q~~ 352 (484)
+|||....+. .....+++.|++.|.+.|+-+.++.... +-+.+. ..+++.... . +- +..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 4666555432 2245688888888888888876664211 212221 122332211 1 11 112
Q ss_pred hcCCCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 353 ILSHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 353 ll~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
+-.++.+ +++|.|- +++++|...++|+|++.
T Consensus 73 ~tg~~gv--~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGV--CIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEE--EEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 2233444 8888884 58889999999999995
No 220
>PRK05920 aromatic acid decarboxylase; Validated
Probab=61.13 E-value=12 Score=33.37 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
.+||++...|+.+= +=.+.|.+.|.+.||+|.++.++...+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 35888887776654 689999999999999999999887655554
No 221
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=60.95 E-value=1.4e+02 Score=29.56 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
+++.-.|+.|-..=++.+|..++++|..|.+++.+...+.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 556666799999999999999999999999998876555443
No 222
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=60.42 E-value=1.7e+02 Score=28.42 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHC--CCeEEEEeCCCc--hhhhhHHHhh---cccCCCceEEEEeeCCCccCCCCCCCCccCCCCcc
Q 011490 20 GHMIPMIDIARLLAQH--GALVTIVTTPMN--AARFQNVIER---GIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSM 92 (484)
Q Consensus 20 GHv~P~l~La~~L~~r--Gh~V~~~~~~~~--~~~v~~~~~~---~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (484)
|-=.-+..-.+.+++. .|...++++..+ .+.+-.-..+ ...+..++.|+.+-.- -.-. ...+
T Consensus 58 GGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R--------~lVe---a~~~ 126 (465)
T KOG1387|consen 58 GGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLR--------YLVE---ASTW 126 (465)
T ss_pred CcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEee--------eeee---cccc
Confidence 4444455555666664 566666665532 2222221111 1123335666665321 0111 1112
Q ss_pred chHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcc-hHHHHHHcCCCcEEEecchHHHHH
Q 011490 93 ALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPW-TVSSACKFNVPRIVFHGFSCFCLL 155 (484)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~-a~~~A~~lgIP~v~~~~~~~~~~~ 155 (484)
.-+..+..+...+.-.++.+++ ..||+.|-..-++. -..+.+..++|++++..-|....-
T Consensus 127 ~hfTllgQaigsmIl~~Eai~r---~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~D 187 (465)
T KOG1387|consen 127 KHFTLLGQAIGSMILAFEAIIR---FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTD 187 (465)
T ss_pred cceehHHHHHHHHHHHHHHHHh---CCchheEecCCCcchhHHHHHHccCceEEEEecccccHH
Confidence 3344445555556666777776 49999986665543 445666889999998766655543
No 223
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=59.37 E-value=98 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 15 PFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 15 ~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
+-+.-|-..=.+.|++.|+++|..|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456788899999999999999999986
No 224
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=59.28 E-value=57 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCCCeEEEecC-C-CcchHHHHHHcCCCcEEEecch
Q 011490 117 QPKPSCLISDV-C-LPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 117 ~~~~D~vI~D~-~-~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
...||+||+-. . ...+..-|.++|||++.+.-+.
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 36899877544 3 3567888999999999986554
No 225
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=59.13 E-value=14 Score=32.50 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCch
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~ 48 (484)
+||++...|+.|=+.-.+.+.++|.+.|++|.++.++...
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 3788888888888887789999999999999999887543
No 226
>PRK05595 replicative DNA helicase; Provisional
Probab=58.53 E-value=71 Score=32.44 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-HCCCeEEEEeCCCchhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~-~rGh~V~~~~~~~~~~~v 51 (484)
+++...|+.|-..-.+.+|..++ ++|+.|.|++.+...+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 56677889999999999999876 569999999987765544
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.79 E-value=12 Score=32.56 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCCccccccccchhhHHHHHHcCCCEeccccc
Q 011490 355 SHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF 387 (484)
Q Consensus 355 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 387 (484)
..+++ +|++||...+..... ++|+|-+|..
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCC
Confidence 34555 999999999888877 9999999983
No 228
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.68 E-value=34 Score=28.18 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
.+|++-+..+.+|-.----++..|.+.|++|......-..+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4899999999999999999999999999999999875544444333
No 229
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=56.60 E-value=71 Score=33.60 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=49.8
Q ss_pred cCCCccCCH-HHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcC--------C--hhhhc
Q 011490 286 LGSLCDSST-RQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWA--------P--QVVIL 354 (484)
Q Consensus 286 ~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~--------p--q~~ll 354 (484)
.||...... .....+++.|++.|.+.+.-+.++.... +-+.+. ..+++....-. - +..+-
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~------l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILP------LYDALS---QSTQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHHHc
Confidence 444443332 3345578888888888887776653211 212221 12233221111 0 12222
Q ss_pred CCCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 355 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 355 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
.++.+ +++|.|- +++++|...++|+|++-
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44555 7888774 48899999999999985
No 230
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=56.04 E-value=63 Score=32.27 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=25.9
Q ss_pred EEEE-cCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 11 FILF-PFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 11 il~~-~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
|++. +..+.|-..=.+.|.++|++||+.|-=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4444 3347799999999999999999999765
No 231
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=55.18 E-value=12 Score=30.52 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
..-.+.-.+-|+..|+++||+|++++++.....++-
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 455666788899999999999999999865554443
No 232
>PRK08506 replicative DNA helicase; Provisional
Probab=54.69 E-value=1.1e+02 Score=31.27 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
=+++...|+.|-..-.+.+|...+++|+.|.|++.+.....+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 3677788899999999999999988999999999877655443
No 233
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=54.49 E-value=62 Score=27.93 Aligned_cols=45 Identities=11% Similarity=-0.066 Sum_probs=37.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
+++.-.|+.|=..=.+.++.+.++.|..|.|++.+...+.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHH
Confidence 566777899999999999999999999999999877666555443
No 234
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=54.45 E-value=56 Score=29.69 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
-+++.-.++.|-..-...++.+.+++|..|.|++.+...+.+.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~ 71 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ 71 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH
Confidence 466667779999999999998888899999999987655544443
No 235
>PRK08760 replicative DNA helicase; Provisional
Probab=54.00 E-value=65 Score=33.07 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCchhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARF 51 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~-rGh~V~~~~~~~~~~~v 51 (484)
=+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 3677788899999999999998875 59999999887765543
No 236
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=53.98 E-value=99 Score=26.05 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCcc
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIG 360 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~ 360 (484)
.|-|-+||.. +....+++...|+..+..+-..+-+-+. .|+.+.+ ++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--------~p~~l~~-----------~~~~~~~-~~~~v- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--------TPERLLE-----------FVKEYEA-RGADV- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--------SHHHHHH-----------HHHHTTT-TTESE-
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHHH-----------HHHHhcc-CCCEE-
Confidence 4556667655 5677788888998888766555544321 3332221 1111000 12334
Q ss_pred ccccccchh----hHHHHHHcCCCEeccccccchhh----HHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHH
Q 011490 361 GFLTHCGWN----SVLEAVSNGLPMVTWPFFADQFC----NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 432 (484)
Q Consensus 361 ~~I~HgG~~----s~~eal~~GvP~l~~P~~~DQ~~----na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (484)
||.=.|.. ++..++ .-.|+|.+|....+.. ....+.--.|+++..-.- +...++.-+.-
T Consensus 59 -iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~A~ 125 (150)
T PF00731_consen 59 -IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALLAA 125 (150)
T ss_dssp -EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHHHH
T ss_pred -EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHHHH
Confidence 77777754 333333 3789999998776432 122221123555444321 01245555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011490 433 AINMLMDEGEERDERRRRAREYGETAKT 460 (484)
Q Consensus 433 ai~~vl~~~~~~~~~r~~a~~l~~~~~~ 460 (484)
.|-.+ .|+ +++++.+..++++++
T Consensus 126 ~ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 126 RILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHHhc-CCH----HHHHHHHHHHHHHHc
Confidence 44333 345 778888887777664
No 237
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=53.84 E-value=82 Score=30.67 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCC---C--HHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 9 LHFILFPFLAQG---H--MIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 9 ~kil~~~~~~~G---H--v~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
.-|+|.|..+.| + ..-+..|++.|.++|++|.+.+++...+..++.... .... .....
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~-------~~~~----------~~~~~ 243 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA-------LNTE----------QQAWC 243 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh-------cccc----------cccce
Confidence 346666633222 1 335789999999889999988877655444433210 0000 00000
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
. . .. -.....++..+++ +.|++|+.-. +...+|..+|+|+|.++..
T Consensus 244 ~--~-l~-----------g~~sL~el~ali~----~a~l~I~nDT--Gp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 244 R--N-LA-----------GETQLEQAVILIA----ACKAIVTNDS--GLMHVAAALNRPLVALYGP 289 (348)
T ss_pred e--e-cc-----------CCCCHHHHHHHHH----hCCEEEecCC--hHHHHHHHhCCCEEEEECC
Confidence 0 0 00 0011223344554 5889997665 6789999999999997653
No 238
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=53.14 E-value=15 Score=32.03 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
||++...|+-|-+.- ..|.+.|+++|++|.++.++...+.+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 466666666665554 899999999999999999987666554
No 239
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=52.74 E-value=97 Score=31.31 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEecc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTW 384 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~ 384 (484)
++.+ +++|.|- +.+.+|.+.++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4555 8888774 4788999999999999
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.73 E-value=1.5e+02 Score=25.32 Aligned_cols=99 Identities=10% Similarity=-0.069 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEE---EeCC--CchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTI---VTTP--MNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~---~~~~--~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~ 83 (484)
--|.+++.++.|-....+.+|-+.+.+|+.|.| +-.. ..+..+-+.+ +++.+...+.. ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-------~~v~~~~~g~~-------~~~ 68 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-------PNIEIHRMGRG-------FFW 68 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-------CCcEEEECCCC-------Ccc
Confidence 358888999999999999999999999999999 4332 1222121111 25676654311 111
Q ss_pred CccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc
Q 011490 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLP 130 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~ 130 (484)
.. . . ...-...........++.+++ ..+|+||.|-...
T Consensus 69 ~~----~--~-~~~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 69 TT----E--N-DEEDIAAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred CC----C--C-hHHHHHHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 10 0 1 112122233444555666666 7999999999753
No 241
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.51 E-value=27 Score=31.27 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=67.9
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeCCC-chhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCcc
Q 011490 9 LHFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTPM-NAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (484)
Q Consensus 9 ~kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~~~-~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~ 86 (484)
+=+-++-.- +..|+...+.+...++.||=.+.|+++.. +.+.+++...+. .+..+.-..++ |+-......
T Consensus 80 ~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~--~gy~~~~~w~~------G~lTN~~~l 151 (251)
T KOG0832|consen 80 LGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA--GGYSHNRKWLG------GLLTNAREL 151 (251)
T ss_pred cCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh--cCceeeeeecc------ceeecchhh
Confidence 334444443 66788899999999999999999998744 555566554322 12111111111 221111100
Q ss_pred CCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEe-cCCC-cchHHHHHHcCCCcEEEecchH
Q 011490 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLIS-DVCL-PWTVSSACKFNVPRIVFHGFSC 151 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~-D~~~-~~a~~~A~~lgIP~v~~~~~~~ 151 (484)
.. ...+ -....+....++.. ..+|+||+ |..- -.|..-|.+++||+|.+.-+.+
T Consensus 152 ~g-----~~~~----~~~~~pd~~~f~~t--~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 152 FG-----ALVR----KFLSLPDALCFLPT--LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cc-----cccc----cccCCCcceeeccc--CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 00 0000 00112222334444 67798775 4433 4788899999999999755443
No 242
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=52.40 E-value=9.7 Score=32.36 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
||.++-.|..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666554 89999999999999998764
No 243
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.02 E-value=1.4e+02 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
++.+ +++|+|- +.+.+|...++|+|++.-
T Consensus 59 ~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3455 7888663 578899999999999964
No 244
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=51.98 E-value=1.4e+02 Score=29.93 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-HCCCeEEEEeCCCchhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~-~rGh~V~~~~~~~~~~~v 51 (484)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+...+.+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 67777889999999999998887 679999999987765544
No 245
>PRK07206 hypothetical protein; Provisional
Probab=51.92 E-value=58 Score=32.61 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+|+++-.... ...++++++++|+++..++..
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 7888875433 356999999999999888765
No 246
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=51.89 E-value=41 Score=26.85 Aligned_cols=44 Identities=14% Similarity=-0.018 Sum_probs=35.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
++..+.++..|......++..|.++|++|.+.......+.+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHH
Confidence 57778889999999999999999999999999765444444433
No 247
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=51.61 E-value=21 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCchhhhhHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~-rGh~V~~~~~~~~~~~v~~~ 54 (484)
||++...|+-| .+=...|.++|.+ .||+|.++.++...+.+...
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 68888888777 6669999999999 59999999998766655543
No 248
>PRK05636 replicative DNA helicase; Provisional
Probab=51.21 E-value=72 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=33.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-HCCCeEEEEeCCCchhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~-~rGh~V~~~~~~~~~~~v 51 (484)
|++...|+.|-..-.+.+|...+ ++|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 57778889999999999998877 458899999887765443
No 249
>PRK09165 replicative DNA helicase; Provisional
Probab=51.13 E-value=1.1e+02 Score=31.49 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHC---------------CCeEEEEeCCCchhhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQH---------------GALVTIVTTPMNAARFQ 52 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~r---------------Gh~V~~~~~~~~~~~v~ 52 (484)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 6777788999999999999988754 78899998877665543
No 250
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=50.82 E-value=32 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=26.0
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEE
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWV 314 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (484)
.+|+|+||........++..+.++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999988777777888888888776433333
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=50.42 E-value=29 Score=32.26 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
...++|+-.|+-|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34689999999999999999999999889999999988655544443
No 252
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=50.05 E-value=44 Score=33.75 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
++|||++-.+++-| +|++.|++-++...+++.|
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 67899999998877 7899999988654444444
No 253
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.78 E-value=1.4e+02 Score=29.53 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
=|+|+-.-+.|-..-+-.||..++++|+.+.+++...+..
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 3555555689999999999999999999999999877654
No 254
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.75 E-value=34 Score=31.80 Aligned_cols=41 Identities=10% Similarity=-0.054 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC------cchHHHHHHcCCCcEEEecc
Q 011490 107 LPLETLFKEIQPKPSCLISDVCL------PWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~------~~a~~~A~~lgIP~v~~~~~ 149 (484)
..|...+++ ..||+||+...+ .-+..+|+.||+|++++...
T Consensus 102 ~~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 344556666 579999975532 24678999999999986543
No 255
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=1.5e+02 Score=29.49 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
=|++---|+-|--.=++.++..|+++| .|.+++.+....+++-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 356666778999999999999999999 9999999876555543
No 256
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=49.57 E-value=15 Score=37.39 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred hHHHHHHcCCCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHH
Q 011490 370 SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRR 449 (484)
Q Consensus 370 s~~eal~~GvP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~ 449 (484)
++.||+++|.|++.+=.. .-+.-+ +..--|...++. .-....+++++-++..|++....+++
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788999999999987332 223333 233346666554 34556899999999999955555544
Q ss_pred HHH
Q 011490 450 RAR 452 (484)
Q Consensus 450 ~a~ 452 (484)
+-.
T Consensus 443 ~G~ 445 (495)
T KOG0853|consen 443 NGL 445 (495)
T ss_pred HHH
Confidence 433
No 257
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=48.70 E-value=2e+02 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=26.7
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 11 FILFPF-LAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 11 il~~~~-~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
|.+... ...|-..=.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344433 367999999999999999999998875
No 258
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=48.62 E-value=2e+02 Score=29.10 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
..+.+++++ .+||++|.++. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 355777777 79999999986 357899999999874
No 259
>PRK11823 DNA repair protein RadA; Provisional
Probab=48.56 E-value=2.2e+02 Score=28.91 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
-+++.-.|+.|-..=++.++..++++|+.|.|++.+...+.+..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 35666677999999999999999999999999998766555443
No 260
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.98 E-value=1.9e+02 Score=29.05 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
.+.+.++. .+||++|.+... ..+|+++|||++.+
T Consensus 347 e~~~~i~~--~~pDl~ig~s~~---~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKE--KKADLLVAGGKE---RYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhh--cCCCEEEECCcc---hhhHHhcCCCEEEc
Confidence 44566777 799999999653 46799999999853
No 261
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.46 E-value=20 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
||++...++.| .+-...|.+.|+++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67777777664 5566799999999999999998886554443
No 262
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=47.42 E-value=26 Score=35.72 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCCCCHHHH------------HHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLAQGHMIPM------------IDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~------------l~La~~L~~rGh~V~~~~~~~ 46 (484)
.+||++...|+.-.+.|. .+||+++..+|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 468999998888888774 689999999999999999773
No 263
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=47.30 E-value=2.7e+02 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
++..+++ +.|++|+.-. +...+|..+|+|+|.++..
T Consensus 253 el~ali~----~a~l~Vs~DS--Gp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 253 QLAALID----HARLFIGVDS--VPMHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHHHH----hCCEEEecCC--HHHHHHHHcCCCEEEEECC
Confidence 3445554 5899997754 6789999999999997653
No 264
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=46.89 E-value=2.1e+02 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=29.4
Q ss_pred HchHHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEE
Q 011490 104 MLRLPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~ 145 (484)
......++.+++ .+.|+|+... +..-+..+.+.+|||++=
T Consensus 161 ~l~~~~~~a~~e--dgAeaIiLGCAGms~la~~Lq~~~gvPVID 202 (230)
T COG4126 161 LLVIEAAEALKE--DGAEAIILGCAGMSDLADQLQKAFGVPVID 202 (230)
T ss_pred HHHHHHHHHhhh--cCCCEEEEcCccHHHHHHHHHHHhCCCccc
Confidence 344566777777 8999999655 444566789999999874
No 265
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.78 E-value=2.6e+02 Score=26.41 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=30.0
Q ss_pred CeEeeCcCCh---hhhcCCCCccccccccchhhHHHHHHcCCCEe
Q 011490 341 GLLIRGWAPQ---VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMV 382 (484)
Q Consensus 341 nv~~~~~~pq---~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 382 (484)
.+.+.+|+|| +.+|--|++ -+-. |=-|...|..+|.|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcE
Confidence 5677899997 458888887 3333 5678999999999987
No 266
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.74 E-value=1.8e+02 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCchhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARF 51 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~-rGh~V~~~~~~~~~~~v 51 (484)
=+++...|+.|=..-.+.+|..++. .|+.|.|++.+...+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3667777899999999999999886 59999999988766554
No 267
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.70 E-value=2.2e+02 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
++.+.+++ .+||++|... ....+|+++|||++.
T Consensus 384 e~~~~i~~--~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKE--AKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhh--cCCCEEEecC---chhhhhhhcCCCEEE
Confidence 34556666 7999999974 455789999999984
No 268
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=46.66 E-value=1.6e+02 Score=27.37 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccchHHHHHHH
Q 011490 22 MIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAA 101 (484)
Q Consensus 22 v~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (484)
..-+..|++.|.++|++|.+++.+...+..+...+.. + ...... +. ..
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~---~-~~~~~~---------~~---------~~---------- 186 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAAL---G-GPRVVN---------LA---------GK---------- 186 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhc---C-CCcccc---------Cc---------CC----------
Confidence 3468899999999999999988776544444432100 0 000000 00 00
Q ss_pred HHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 102 IEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
....++..+++ +.|++|+-.. +...+|..+|+|++.++..
T Consensus 187 --~~l~e~~~li~----~~~l~I~~Ds--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 187 --TSLRELAALLA----RADLVVTNDS--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred --CCHHHHHHHHH----hCCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 01123344443 5899997553 5678889999999998654
No 269
>PRK11519 tyrosine kinase; Provisional
Probab=46.41 E-value=73 Score=34.68 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=31.6
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPF--LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~--~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+.|+++++. |+-|-..-...||..|++.|+.|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 557777766 47789999999999999999999999543
No 270
>PRK13604 luxD acyl transferase; Provisional
Probab=46.38 E-value=40 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
+.+++++.++..++-.-+..+|+.|+++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 55788888898888777999999999999998876
No 271
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=46.34 E-value=37 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc-hhhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN-AARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~-~~~v~~~ 54 (484)
++||-|=..|+-|-.+-|+.=|++|+++|.+|.+..-+.. .......
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l 52 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEAL 52 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHH
Confidence 7999999999999999999999999999999999866543 3334443
No 272
>PRK09620 hypothetical protein; Provisional
Probab=46.26 E-value=37 Score=30.98 Aligned_cols=38 Identities=16% Similarity=-0.082 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIP------------MIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P------------~l~La~~L~~rGh~V~~~~~~ 45 (484)
.+||++.+.|+.-.+.| -..||++|.++||+|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35777776665544333 367999999999999999765
No 273
>PRK00784 cobyric acid synthase; Provisional
Probab=46.15 E-value=1.8e+02 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.3
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 10 kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
.|.+.... .-|-..=...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 46666444 579999999999999999999987754
No 274
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.03 E-value=1.5e+02 Score=25.98 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=44.4
Q ss_pred CcE-EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC---CchhhhhHHHhhcccCCCceEEEEee
Q 011490 8 QLH-FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP---MNAARFQNVIERGIQSGLRIQVIEFY 71 (484)
Q Consensus 8 ~~k-il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~---~~~~~v~~~~~~~~~~~~~i~~~~i~ 71 (484)
+.+ |+|+..+..-|---+..+++.|++.|..|.+++-. .+.+.++...+... .+.+-.|+.+|
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 346 88888887778777889999999999998888643 34555666555443 23356777765
No 275
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=45.54 E-value=34 Score=29.63 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=30.7
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHH-CCCeEEEEeCCCchhhhh
Q 011490 11 FILFPFLAQGHMIP-MIDIARLLAQ-HGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 11 il~~~~~~~GHv~P-~l~La~~L~~-rGh~V~~~~~~~~~~~v~ 52 (484)
|+..-.++ ||... .+.+.++|++ +||+|.++.++...+.+.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 45555554 78766 8999999985 599999999887665444
No 276
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=45.16 E-value=28 Score=34.55 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
.+||++...|+.|= .-.+.|.+.|.+.|++|.++.++...+.+...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 45888888876655 55899999999999999999988766655443
No 277
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.05 E-value=1.6e+02 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
..+.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 385 ~e~~~~i~~--~~pDl~ig~~~---~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLE--YKADLLIAGGK---ERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhh--cCCCEEEEccc---hHHHHHhcCCCEEEc
Confidence 345667777 79999998743 355788999999874
No 278
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.98 E-value=33 Score=31.38 Aligned_cols=44 Identities=7% Similarity=-0.060 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCCchhhhhH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN 53 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r--Gh~V~~~~~~~~~~~v~~ 53 (484)
||++.-.|+.+=+.=.+.|.+.|+++ ||+|.++.++...+.+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 35555555555557899999999999 999999998865554443
No 279
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.72 E-value=2.2e+02 Score=28.64 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
+..|+++-.=+.|-..-.-.||+.|+++|+.|.+++...+......+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 34566666669999999999999999999999999987776543333
No 280
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.31 E-value=33 Score=29.77 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHH-HHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCcc--CC---CCCCCCccC--CCCc
Q 011490 20 GHMIPMIDIARLL-AQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQE--VG---LPEGCESWD--KLPS 91 (484)
Q Consensus 20 GHv~P~l~La~~L-~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~--~~---~~~~~~~~~--~~~~ 91 (484)
+.+.=.+.+|+.| .+.|.+|.+.-+. ....+++.. .+..+.++....+ .. ......... ...+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5778889999999 7889999887643 333333331 3555555433222 00 000000000 0000
Q ss_pred -cchHHHHHHHH------------HHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecch
Q 011490 92 -MALLPKFFAAI------------EMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 92 -~~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
......+...+ ......+.++.+ .+.|+||.+.. +..+|+++|+|++.+.+..
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 01122222222 233334444443 58999999985 4688999999999876543
No 281
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=44.09 E-value=1.1e+02 Score=23.46 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCCh
Q 011490 389 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSS 468 (484)
Q Consensus 389 DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~ 468 (484)
|+..|.... |..|.+.+. ++++.++.+++-++++.. ..=.+.+-+.+.+. |++
T Consensus 21 ~~~gWr~LA-e~lg~~~~f----------------r~S~~el~~cslkvl~p~------gSPsk~LL~~~~~r---g~T- 73 (97)
T cd08783 21 DGKGWRKLA-ELAGSRGRF----------------RLSCLDLEQCSLKVLEPE------GSPSRSLLKLLGER---GCT- 73 (97)
T ss_pred ccCCHHHHH-HHHccCCcc----------------ccCHHHHHHHHHHHhcCC------CCchHHHHHHHHHc---CCc-
Confidence 556677777 688887733 589999999999999732 12244454554433 665
Q ss_pred HHHHHHHHHHHHhh
Q 011490 469 YLNIKLLIKDILQQ 482 (484)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (484)
++++++.+.+|
T Consensus 74 ---v~~Ll~~L~~M 84 (97)
T cd08783 74 ---VTELSEFLQAM 84 (97)
T ss_pred ---HHHHHHHHHHh
Confidence 66677766665
No 282
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=43.92 E-value=2.8e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 118 PKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 118 ~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
.+.|++|+.-. +...+|..+|+|+|.++..
T Consensus 252 ~~a~l~I~nDS--Gp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 252 AGAKAVVSVDT--GLSHLTAALDRPNITLYGP 281 (322)
T ss_pred HhCCEEEecCC--cHHHHHHHhCCCEEEEECC
Confidence 35899997765 5789999999999998764
No 283
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.70 E-value=92 Score=28.04 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcc-------cCCCceEEEEeeCCCccCCCCCCCCccCCCC
Q 011490 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGI-------QSGLRIQVIEFYFPCQEVGLPEGCESWDKLP 90 (484)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~-------~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (484)
+.|--.=...++..+...||.|++++++.....+-+..++.. ..| .+.|.++..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~------------------ 98 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNL------------------ 98 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecc------------------
Confidence 667777788899999999999999999876655444433210 011 133332210
Q ss_pred ccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcc
Q 011490 91 SMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPW 131 (484)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~ 131 (484)
.....-....+...+.+.+.++. ++-|++|.|++...
T Consensus 99 --~~~~~~~~~~~~~L~~l~~~~k~--~~~dViIIDSls~~ 135 (235)
T COG2874 99 --EPVNWGRRSARKLLDLLLEFIKR--WEKDVIIIDSLSAF 135 (235)
T ss_pred --cccccChHHHHHHHHHHHhhHHh--hcCCEEEEecccHH
Confidence 00111122233455556666666 89999999998753
No 284
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=43.30 E-value=31 Score=31.42 Aligned_cols=21 Identities=38% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 011490 25 MIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 25 ~l~La~~L~~rGh~V~~~~~~ 45 (484)
-..||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 367889999999999998744
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=43.29 E-value=2.8e+02 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~ 52 (484)
-+++.-.|+.|-..=++.++..++++|+.|.|++.+...+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 3566666799999999999999999999999998876554443
No 286
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=43.13 E-value=1.2e+02 Score=31.91 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 66 ~~gv--~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 66 KVGV--AIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 8888874 58899999999999984
No 287
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.11 E-value=30 Score=30.86 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|++.-+|+.|-..-.-.||++|.+++|+|.-++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 6677788999999999999999999999987764
No 288
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=42.98 E-value=1.5e+02 Score=31.19 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +.+++|...++|+|++-
T Consensus 71 ~~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 71 RPGI--CFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 8888884 58889999999999883
No 289
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=42.97 E-value=1.9e+02 Score=28.21 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
++..+++ +.|++|+.-. +...+|..+|+|+|.++..
T Consensus 255 el~ali~----~a~l~v~nDS--Gp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 255 ELGALID----HAQLFIGVDS--APAHIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHHHH----hCCEEEecCC--HHHHHHHHcCCCEEEEECC
Confidence 3445554 5899997765 6789999999999997653
No 290
>PTZ00445 p36-lilke protein; Provisional
Probab=42.74 E-value=84 Score=28.16 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=60.8
Q ss_pred CCHHH-HHHHHHHHHHCCCeEEEEeCCCchh--------------hhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCC
Q 011490 20 GHMIP-MIDIARLLAQHGALVTIVTTPMNAA--------------RFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (484)
Q Consensus 20 GHv~P-~l~La~~L~~rGh~V~~~~~~~~~~--------------~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 84 (484)
+|+.| +..+.++|.+.|..|+++|..+... .++..+... ...+....+- ...|.-+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s---~~~~~i~~~~-----~yyp~~w~ 145 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS---KCDFKIKKVY-----AYYPKFWQ 145 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc---Cccceeeeee-----eeCCcccC
Confidence 45667 8899999999999999999755432 444444322 1111111110 01122111
Q ss_pred ccCCCCccchHHHHHHHH-HHch--HHHHHHHHhcCCCC-eEEEecCCCcchHHHHHHcCCCcEEEe
Q 011490 85 SWDKLPSMALLPKFFAAI-EMLR--LPLETLFKEIQPKP-SCLISDVCLPWTVSSACKFNVPRIVFH 147 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~--~~l~~~l~~~~~~~-D~vI~D~~~~~a~~~A~~lgIP~v~~~ 147 (484)
.. ..+..+...- .... -.++.++++.+..| ++++.|-. ..-+..|+.+|+-.+.+.
T Consensus 146 ~p------~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 146 EP------SDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVT 205 (219)
T ss_pred Ch------hhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcC
Confidence 11 0111110000 0111 13367777755555 47778876 467789999999998864
No 291
>PRK07773 replicative DNA helicase; Validated
Probab=42.26 E-value=1.9e+02 Score=32.49 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHC-CCeEEEEeCCCchhhhh
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQ 52 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~r-Gh~V~~~~~~~~~~~v~ 52 (484)
|++..-|+.|-..-.+.+|...+.+ |..|.|++-+...+.+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 6777888999999999999998865 88999998877665543
No 292
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=42.06 E-value=1.6e+02 Score=23.63 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHchHHHHHHHHhcCCCCeEEEecCC
Q 011490 102 IEMLRLPLETLFKEIQPKPSCLISDVC 128 (484)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~D~vI~D~~ 128 (484)
.......+.+++++ .+||+|++-..
T Consensus 85 ~~~~~~~l~~~i~~--~~p~~V~t~~~ 109 (128)
T PF02585_consen 85 WEELVRDLEDLIRE--FRPDVVFTPDP 109 (128)
T ss_dssp HHHHHHHHHHHHHH--H-ESEEEEE-S
T ss_pred HHHHHHHHHHHHHH--cCCCEEEECCC
Confidence 34566678888888 89999987653
No 293
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=41.71 E-value=37 Score=35.45 Aligned_cols=40 Identities=8% Similarity=-0.194 Sum_probs=28.4
Q ss_pred CeEEEecCC---CcchHHHHHHcCCCcEEEecchHHHHHHHHh
Q 011490 120 PSCLISDVC---LPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (484)
Q Consensus 120 ~D~vI~D~~---~~~a~~~A~~lgIP~v~~~~~~~~~~~~~~~ 159 (484)
-.-||+... +..+....++..+++.+++|+.++...-+..
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~ 184 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLA 184 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHT
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhh
Confidence 456666553 3457788999999999999999998876553
No 294
>PLN02939 transferase, transferring glycosyl groups
Probab=41.64 E-value=45 Score=37.04 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=29.0
Q ss_pred CcEEEEEcCCC-----CCCH-HHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLA-----QGHM-IPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~-----~GHv-~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
++||+|+++-. .|-+ .-.-.|.++|+++||+|.+++|..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 79999997532 1222 234578999999999999999754
No 295
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=41.34 E-value=2.3e+02 Score=26.42 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCeEEE-ecCCC-cchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI-~D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+|| .|... ..|..=|.++|||+|.+.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 5799877 55533 467889999999999975543
No 296
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=41.33 E-value=80 Score=28.79 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCC----CHHHHHHHHHHHHHCCCeEEEEeCCCch-hhhhHHHhhcccCCCceE--EEEeeCCCccCCCC
Q 011490 8 QLHFILFPFLAQG----HMIPMIDIARLLAQHGALVTIVTTPMNA-ARFQNVIERGIQSGLRIQ--VIEFYFPCQEVGLP 80 (484)
Q Consensus 8 ~~kil~~~~~~~G----Hv~P~l~La~~L~~rGh~V~~~~~~~~~-~~v~~~~~~~~~~~~~i~--~~~i~~~~~~~~~~ 80 (484)
+..|+|.+..+.. -..-+..|++.|.++|.+|.+++++... ......+.. ++. ...+ .
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~------~~~~~~~~~---------~ 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA------GLQNPVINL---------A 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT------THTTTTEEE---------T
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH------hcccceEee---------c
Confidence 4566776655331 1233689999999999899888877652 222222110 010 1110 0
Q ss_pred CCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEecchH
Q 011490 81 EGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~~~ 151 (484)
. . . . ..++..+++ ..|++|+--. +...+|..+|+|++.++....
T Consensus 170 ~---------~-~---~--------l~e~~ali~----~a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~t~ 213 (247)
T PF01075_consen 170 G---------K-T---S--------LRELAALIS----RADLVIGNDT--GPMHLAAALGTPTVALFGPTN 213 (247)
T ss_dssp T---------T-S------------HHHHHHHHH----TSSEEEEESS--HHHHHHHHTT--EEEEESSS-
T ss_pred C---------C-C---C--------HHHHHHHHh----cCCEEEecCC--hHHHHHHHHhCCEEEEecCCC
Confidence 0 0 0 1 112344454 5899997665 678999999999999876653
No 297
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=41.06 E-value=1.1e+02 Score=32.18 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=22.3
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
.+.+ +++|.|- +.+.+|...++|+|++-
T Consensus 68 ~~gv--~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGV--CTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEE--EEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 4455 7778774 57899999999999995
No 298
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.87 E-value=23 Score=32.67 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCC
Q 011490 24 PMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 24 P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
-.-.|+++|+++||+|++++|..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35679999999999999999755
No 299
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=40.73 E-value=1.4e+02 Score=31.64 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCCccccccccc------hhhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCG------WNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.| .+++++|...++|+|++-
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4555 888877 458899999999999984
No 300
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.59 E-value=62 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEEE
Q 011490 108 PLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~~ 146 (484)
.+.+.++. .++|.|++=. -++.|..+|.++|+|+|.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 55666666 6899999544 3467899999999999984
No 301
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.41 E-value=92 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.021 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCch-hhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA-ARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~-~~v~~~ 54 (484)
++||++...+..+|-.----++..|+..|++|......... +.++..
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa 49 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA 49 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999999999999999998764433 333443
No 302
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=40.41 E-value=52 Score=28.90 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCC--eEEEecCCC-cchHHHHHHcCCCcEEEecch
Q 011490 107 LPLETLFKEIQPKP--SCLISDVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 107 ~~l~~~l~~~~~~~--D~vI~D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..+++++++ ..+ .++|..++- +.|..+|+++|+|.|.+.|.-
T Consensus 47 ~~l~~~i~~--~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEE--LKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHh--CCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 445667776 343 366666643 577889999999999876553
No 303
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=40.15 E-value=1.3e+02 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCCccccccccc------hhhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCG------WNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.| .+++++|...++|+|++-
T Consensus 64 ~~gv--~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGV--VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 888877 458899999999999994
No 304
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=40.09 E-value=3.9e+02 Score=26.58 Aligned_cols=61 Identities=23% Similarity=0.191 Sum_probs=35.3
Q ss_pred cccchhhHHHHHHcCCCEec--cccccch------hhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHH
Q 011490 364 THCGWNSVLEAVSNGLPMVT--WPFFADQ------FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 435 (484)
Q Consensus 364 ~HgG~~s~~eal~~GvP~l~--~P~~~DQ------~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 435 (484)
---|..++..|+.+|.|+-. ++..+|- -.|+.++++.+--.+. .++.+++..+|.
T Consensus 249 Et~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-----------------vV~~~ei~aaI~ 311 (457)
T KOG1250|consen 249 ETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-----------------VVEDDEIAAAIL 311 (457)
T ss_pred eecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-----------------EeccHHHHHHHH
Confidence 33456788889999988532 1112221 2234444322222222 478889999999
Q ss_pred HHhcCC
Q 011490 436 MLMDEG 441 (484)
Q Consensus 436 ~vl~~~ 441 (484)
++++|.
T Consensus 312 ~l~ede 317 (457)
T KOG1250|consen 312 RLFEDE 317 (457)
T ss_pred HHHHhh
Confidence 999754
No 305
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=40.04 E-value=2.9e+02 Score=25.09 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCeEEE-ecCC-CcchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLI-SDVC-LPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI-~D~~-~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+|| .|+. ...|..=|.++|||+|.+.-+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 5799877 5553 3567889999999999975543
No 306
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.04 E-value=44 Score=33.39 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
.+||++...|+. ..+=...|.++|+++|++|.++.++...+.+..
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 568988888876 555789999999999999999998876665543
No 307
>CHL00067 rps2 ribosomal protein S2
Probab=40.00 E-value=2.6e+02 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCCeEEEe-cCCC-cchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLIS-DVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI~-D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+||+ |+.. .-+..-|.++|||+|.+.-+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 57998774 5543 468889999999999985554
No 308
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=39.75 E-value=62 Score=31.30 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHchHHHHHHHHhcCCCCeEEEecCCCcc------h----HHHHHHcCCCcEE
Q 011490 103 EMLRLPLETLFKEIQPKPSCLISDVCLPW------T----VSSACKFNVPRIV 145 (484)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~D~vI~D~~~~~------a----~~~A~~lgIP~v~ 145 (484)
+.....+.+++++ .+||+||+-+.+.. + ..+.++++||.++
T Consensus 66 eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 66 EEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 3456677788888 89999999995521 1 1356689999997
No 309
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=39.53 E-value=77 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQH 35 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~r 35 (484)
++++ -.|+-||.-=|+.|-+.|.++
T Consensus 40 ~~lV-vlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLV-VLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEE-EEcCCCcHHHHHHHHHHHHhh
Confidence 4444 458999999999999999876
No 310
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.12 E-value=3.3e+02 Score=26.29 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=32.2
Q ss_pred cEEEEEcC-CCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 9 LHFILFPF-LAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 9 ~kil~~~~-~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
.||+|++. |+-|-..=.-++|-.|++.|..|.++++...+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 46676665 477998889999999999998888887765443
No 311
>PRK08322 acetolactate synthase; Reviewed
Probab=38.79 E-value=1.4e+02 Score=31.17 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 63 ~~gv--~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGV--CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3445 8888774 58899999999999985
No 312
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=38.64 E-value=1.1e+02 Score=27.07 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=67.6
Q ss_pred HHHHH-HHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHH
Q 011490 294 TRQLI-ELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVL 372 (484)
Q Consensus 294 ~~~~~-~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~ 372 (484)
.+.+. .+.+.+...+..+|+..|...- |...|..++...-+-+ ||++ .=.++|..+..
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGyMrI--------L~~~fl~~~~grIlNI-----------HPSL--LP~f~G~h~~~ 122 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGYMRI--------LGPEFLSRFEGRILNI-----------HPSL--LPAFPGLHAHE 122 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcchHHH--------cCHHHHHHhhcceEec-----------Cccc--ccCCCCchHHH
Confidence 34444 4888888888888888776542 4555555444432223 8998 99999999999
Q ss_pred HHHHcCCCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHH
Q 011490 373 EAVSNGLPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINML 437 (484)
Q Consensus 373 eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 437 (484)
+|+.+|+..-.+-.+. +..+-+-.++ ...+.+... -|.|.|.+.|.+.
T Consensus 123 ~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~--------------Dt~etl~~RV~~~ 172 (200)
T COG0299 123 QALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPG--------------DTAETLEARVLEQ 172 (200)
T ss_pred HHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecCC--------------CCHHHHHHHHHHH
Confidence 9999999976665432 2233332221 122333333 3888888877653
No 313
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=38.63 E-value=1.3e+02 Score=31.70 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=22.6
Q ss_pred CCCccccccccchh------hHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGWN------SVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|-| ++.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 88888854 7889999999999984
No 314
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.56 E-value=2.2e+02 Score=25.13 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCch
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~ 48 (484)
-|+|+-..+-|-..=...||..++.+|..|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 456666668999999999999999999999999987654
No 315
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=38.50 E-value=46 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 21 HMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 21 Hv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|+..|...|.+|+++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999876
No 316
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=38.10 E-value=53 Score=31.00 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhh
Q 011490 291 DSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNS 370 (484)
Q Consensus 291 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s 370 (484)
..+.+..+.+.+|+...+.+.||.++++... ..+.++++...+-.+|.. ||=..=..+
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga--------------------~rlL~~ld~~~~~~~pK~--~iGySDiTa 102 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYGA--------------------NRLLPYLDYDLIRANPKI--FVGYSDITA 102 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH--------------------HHhhhhCCHHHHhhCCeE--EEEecHHHH
Confidence 3456677889999999999999999887531 134455666655567776 776666666
Q ss_pred HHHHHHc--CCCEecccccc
Q 011490 371 VLEAVSN--GLPMVTWPFFA 388 (484)
Q Consensus 371 ~~eal~~--GvP~l~~P~~~ 388 (484)
++-+++. |++.+--|...
T Consensus 103 L~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 103 LHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHHHHHhcCceEEECcccc
Confidence 7767653 77777777543
No 317
>PRK10867 signal recognition particle protein; Provisional
Probab=37.96 E-value=3.4e+02 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHC-CCeEEEEeCCCchhh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAAR 50 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~r-Gh~V~~~~~~~~~~~ 50 (484)
.-|+|+-.++.|-..-...||..|+++ |+.|.+++...+...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 345666666999999999999999999 999999988766543
No 318
>PRK11269 glyoxylate carboligase; Provisional
Probab=37.68 E-value=1.5e+02 Score=31.32 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=20.5
Q ss_pred cccccc------hhhHHHHHHcCCCEeccc
Q 011490 362 FLTHCG------WNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 362 ~I~HgG------~~s~~eal~~GvP~l~~P 385 (484)
+++|.| .+++++|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666 779999999999999985
No 319
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=37.61 E-value=3.3e+02 Score=25.79 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHcC
Q 011490 299 ELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNG 378 (484)
Q Consensus 299 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~G 378 (484)
.+++.++..+..+++..+...- +++.|.......-+-+ ||++ .=.+.|.+.+..|+.+|
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i--------l~~~~l~~~~~~iiNi-----------HpSL--LP~~rG~~~~~~ai~~G 214 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYMQV--------LSPELCRKLAGRAINI-----------HHSF--LPGFKGAKPYHQAYERG 214 (286)
T ss_pred HHHHHHHHhCcCEEEEeChhhh--------CCHHHHhhccCCeEEe-----------cccc--CCCCCCCcHHHHHHHCC
Confidence 4677788888888888877642 6776655443332333 6666 66678999999999999
Q ss_pred CCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 379 LPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 379 vP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
+..-.+-.+. +..+-+.-+. .-.+.+..+ -|.++|.+.+.++-
T Consensus 215 ~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~~--------------dt~~~L~~r~~~~E 259 (286)
T PRK13011 215 VKLIGATAHYVTDDLDEGPIIE---QDVERVDHA--------------YSPEDLVAKGRDVE 259 (286)
T ss_pred CCeEEEEEEEEcCCCcCCCcEE---EEEEEcCCC--------------CCHHHHHHHHHHHH
Confidence 9988777543 3334444432 223455544 58999999887643
No 320
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.53 E-value=2.8e+02 Score=28.04 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-HCCCeEEEEeCCCchhh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAAR 50 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~-~rGh~V~~~~~~~~~~~ 50 (484)
.-|+++..++.|-..=...||..|+ ++|+.|.+++...+...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 3466666679999999999999997 58999999988766544
No 321
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=37.24 E-value=1.6e+02 Score=28.15 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 118 PKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 118 ~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
.+.|++|+.-. +...+|..+|+|++.++..
T Consensus 253 ~~a~l~I~~DS--gp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 253 AGADAVVGVDT--GLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred HcCCEEEeCCC--hHHHHHHHcCCCEEEEECC
Confidence 35899997665 5788999999999998654
No 322
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=37.10 E-value=2.5e+02 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=33.2
Q ss_pred CcEEEEEcCC--CCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 8 QLHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~--~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
..|++.++++ +-|--.-...||.+|++.|.+|.++=-......+...
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~ 104 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM 104 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH
Confidence 3566666555 6678888899999999999999999544333333333
No 323
>PRK12827 short chain dehydrogenase; Provisional
Probab=36.93 E-value=1.5e+02 Score=26.71 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
|.++++ ++++ ++ ++.|.+- ..||+.|.++||+|+++.
T Consensus 1 ~~~~~~--~~il-It-Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLDS--RRVL-IT-GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcCC--CEEE-EE-CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 455433 3444 33 5556663 588999999999998865
No 324
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=78 Score=26.76 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHhc-----CCCCeEEEecCCC----------cchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEI-----QPKPSCLISDVCL----------PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~-----~~~~D~vI~D~~~----------~~a~~~A~~lgIP~v~~ 146 (484)
-.++.++..+ ++.||+|++..-+ --+..+|.++|||+.-.
T Consensus 107 LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 107 LNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 3445555443 7999999987632 23667899999998753
No 325
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.66 E-value=51 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCcc--hHHHHHHcCCCcEEEe
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLPW--TVSSACKFNVPRIVFH 147 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~--a~~~A~~lgIP~v~~~ 147 (484)
..++.+++ .+||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~---l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA---LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc---cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 45566665 49999998664322 3344567999998863
No 326
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.33 E-value=1.6e+02 Score=22.18 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=30.6
Q ss_pred CHHHHHH---HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHhh
Q 011490 426 KKEDVKK---AINMLMDEGEERDERRRRAREYGETAKTAIEE-GGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 426 ~~~~l~~---ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~-gg~~~~~~~~~~~~~~~~ 482 (484)
+++.+.+ .++++++|. .+-+|.++.++...+.+.. |.+...-....|..+++.
T Consensus 11 ~~e~i~q~~~lL~~Ii~Dt----tVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeei 67 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDT----TVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEI 67 (93)
T ss_pred hHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 4444444 445567777 5556666666655544443 666666666666666554
No 327
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=36.16 E-value=63 Score=24.42 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=39.2
Q ss_pred CCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhc
Q 011490 421 NGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 483 (484)
Q Consensus 421 ~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~~ 483 (484)
+++.++.++|+..+..-+.+ .+.. ...+.+.++.. +..|.....+++|++.|.+++
T Consensus 22 ~~g~i~~~ELk~ll~~elg~-----~ls~-~~~v~~mi~~~-D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 22 GKESLTASEFQELLTQQLPH-----LLKD-VEGLEEKMKNL-DVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CCCeECHHHHHHHHHHHhhh-----hccC-HHHHHHHHHHh-CCCCCCCCcHHHHHHHHHHHH
Confidence 35689999999999875531 2221 14566666654 667777889999999888765
No 328
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=36.05 E-value=3.3e+02 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEe
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFH 147 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~ 147 (484)
.+.+++++ .+||++|..... ..+|+++|||++-..
T Consensus 380 el~~~i~~--~~pDLlig~~~~---~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMRE--KMPDLIVAGGKT---KFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHh--cCCCEEEecCch---hhHHHHcCCCeEEcc
Confidence 44566777 799999997743 447999999999754
No 329
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.99 E-value=1.1e+02 Score=25.56 Aligned_cols=39 Identities=23% Similarity=0.104 Sum_probs=30.0
Q ss_pred CCcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeC
Q 011490 278 PGSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRP 317 (484)
Q Consensus 278 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 317 (484)
.+.+|+|++||......+.++++++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3448999999998877888888888885 35777776544
No 330
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.54 E-value=1.1e+02 Score=25.63 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=51.7
Q ss_pred cccccchhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHH
Q 011490 384 WPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAKTAI 462 (484)
Q Consensus 384 ~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~r~~a~~l~~~~~~~~ 462 (484)
.|+...+-.+|+.++ +. -..|+. -..+.+.+.+..++.| | .-+-.+.+++..+.++
T Consensus 78 yPWt~~~L~aa~el~-ee--~eeLs~---------------deke~~~~sl~dL~~d~P----kT~vA~~rfKk~~~K~- 134 (158)
T PF10083_consen 78 YPWTENALEAANELI-EE--DEELSP---------------DEKEQFKESLPDLTKDTP----KTKVAATRFKKILSKA- 134 (158)
T ss_pred CchHHHHHHHHHHHH-HH--hhcCCH---------------HHHHHHHhhhHHHhhcCC----ccHHHHHHHHHHHHHH-
Confidence 577778888888776 31 112222 2456788888888754 4 6677888999999888
Q ss_pred hhCCChHHHHHHHHHHHHh
Q 011490 463 EEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 463 ~~gg~~~~~~~~~~~~~~~ 481 (484)
|-+...++++++-++.+
T Consensus 135 --g~~v~~~~~dIlVdv~S 151 (158)
T PF10083_consen 135 --GSIVGDAIRDILVDVAS 151 (158)
T ss_pred --hHHHHHHHHHHHHHHHH
Confidence 87778888888777654
No 331
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=35.41 E-value=3.7e+02 Score=29.15 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.2
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 10 kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
.|.+.+.. ..|-..=.+.|++.|+++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 46666555 579999999999999999999999864
No 332
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=35.31 E-value=4.8e+02 Score=26.54 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 10 kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+|++.... ..|-..=...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45555443 568999999999999999999988854
No 333
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=35.13 E-value=37 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|||.++.. .|++- -.|.++..+|||+||-++-.
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 46666643 45443 36789999999999999865
No 334
>PRK04328 hypothetical protein; Provisional
Probab=35.02 E-value=3.6e+02 Score=24.75 Aligned_cols=45 Identities=13% Similarity=-0.061 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
-+++.-.|+.|-..=.+.++.+-+++|+.+.|++.+...+.+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 466666778899888888877767889999999987666555444
No 335
>PRK08266 hypothetical protein; Provisional
Probab=34.94 E-value=2.5e+02 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 357 PAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 357 ~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
+.+ +++|.|- +++.||...++|+|++-
T Consensus 69 ~~v--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGV--CSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeE--EEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 444 7788774 58899999999999984
No 336
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=34.88 E-value=3e+02 Score=23.81 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEE---eCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV---TTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~---~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~ 84 (484)
+--|.+++..+.|-..-.+.+|-+.+.+|+.|.++ -........ ..++. .++++...+. ++.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~-~~l~~-----~~~~~~~~g~---------g~~ 69 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGER-AAFEP-----HGVEFQVMGT---------GFT 69 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChH-HHHHh-----cCcEEEECCC---------CCe
Confidence 44688888899999999999999999999999655 222111111 11111 1466665431 111
Q ss_pred ccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC
Q 011490 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCL 129 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (484)
... .... .-...........++.+.+ .++|+||.|-..
T Consensus 70 ~~~--~~~~---~~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 70 WET--QNRE---ADTAIAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred ecC--CCcH---HHHHHHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 111 1101 1122233444555666666 799999999975
No 337
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.84 E-value=69 Score=28.19 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.0
Q ss_pred chHHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEEE
Q 011490 105 LRLPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 105 ~~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~~ 146 (484)
....+.+.+++ .++|+|++=. -++.|..+|..+|+|++.+
T Consensus 38 i~~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 38 IGKEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred HHHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 34444455555 6899998544 3467888999999999985
No 338
>PRK06270 homoserine dehydrogenase; Provisional
Probab=34.73 E-value=2.1e+02 Score=27.87 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=36.4
Q ss_pred ChhhhcCCCCcccccc------ccc---hhhHHHHHHcCCCEec---cccccchhhHHHHHHHHhcceeEec
Q 011490 349 PQVVILSHPAIGGFLT------HCG---WNSVLEAVSNGLPMVT---WPFFADQFCNEKLVVQVLRIGVTIG 408 (484)
Q Consensus 349 pq~~ll~~~~~~~~I~------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~~~~e~~G~g~~l~ 408 (484)
...+++..+++..+|- |+| ..-+.+||.+|+++|+ -|+...-....... ++.|+.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 4456675554444665 443 4456899999999999 47754333343334 5667766543
No 339
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.67 E-value=3.5e+02 Score=25.62 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHc
Q 011490 298 IELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN 377 (484)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~ 377 (484)
..+++.++..+..+++..+-..- +++.|...+...-+-+ ||++ .=...|.+....|+.+
T Consensus 159 ~~~~~~l~~~~~Dlivlagym~i--------l~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~ai~~ 217 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYMQV--------LSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQAHAR 217 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhhhh--------CCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHHHHc
Confidence 35777888888899988887642 6666655433332323 5555 5555799999999999
Q ss_pred CCCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhc
Q 011490 378 GLPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 439 (484)
Q Consensus 378 GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 439 (484)
|+....+-.+. +..+.+.-+. .--+.+..+ -|.++|.+.+..+-.
T Consensus 218 G~k~tG~TvH~v~~~lD~GpII~---Q~~v~V~~~--------------dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 218 GVKLIGATAHFVTDDLDEGPIIE---QDVERVDHS--------------YSPEDLVAKGRDVEC 264 (289)
T ss_pred CCCeEEEEEEEEcCCCCCCCceE---EEEEEcCCC--------------CCHHHHHHHHHHHHH
Confidence 99998877543 4445555443 223444444 478888888876543
No 340
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=34.60 E-value=1.2e+02 Score=31.79 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC----------hhhhcCCCCcccccccc
Q 011490 297 LIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP----------QVVILSHPAIGGFLTHC 366 (484)
Q Consensus 297 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p----------q~~ll~~~~~~~~I~Hg 366 (484)
...+++.|++.|.+.++-+.++.... +-+.+ ...+++.+..-.. +...=.++.+ ++.|.
T Consensus 12 a~~l~~~L~~~GV~~vFgvpG~~~~~------l~~~l---~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v--~~vt~ 80 (568)
T PRK07449 12 AAVILEELTRLGVRHVVIAPGSRSTP------LTLAA---AEHPRLRLHTHFDERSAGFLALGLAKASKRPVA--VIVTS 80 (568)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccHH------HHHHH---HhCCCcEEEeecCcccHHHHHHHHHHhhCCCEE--EEECC
Confidence 34578888888888888776654211 11111 1223333222111 1112224445 77777
Q ss_pred c------hhhHHHHHHcCCCEecccc
Q 011490 367 G------WNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 367 G------~~s~~eal~~GvP~l~~P~ 386 (484)
| .++++||-..++|+|++.-
T Consensus 81 GpG~~N~l~~i~~A~~~~~Pvl~IsG 106 (568)
T PRK07449 81 GTAVANLYPAVIEAGLTGVPLIVLTA 106 (568)
T ss_pred ccHHHhhhHHHHHHhhcCCcEEEEEC
Confidence 7 4588999999999999943
No 341
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=34.38 E-value=4.7e+02 Score=29.48 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=53.5
Q ss_pred hhcCCCCcccccc---ccchhhHH-HHHHcCCC---EeccccccchhhHHHHHHHHhc-ceeEeccCCCCCCcccccCCC
Q 011490 352 VILSHPAIGGFLT---HCGWNSVL-EAVSNGLP---MVTWPFFADQFCNEKLVVQVLR-IGVTIGAERPPSLADEERNGV 423 (484)
Q Consensus 352 ~ll~~~~~~~~I~---HgG~~s~~-eal~~GvP---~l~~P~~~DQ~~na~~~~e~~G-~g~~l~~~~~~~~~~~~~~~~ 423 (484)
.++..++| ++. .-|+|-+. |+++++.- +++++-+ -.-| +.+| -|+.+++.
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa----~~L~~~AllVNP~------------- 512 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAA----QSLGAGAILVNPW------------- 512 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchH----HHhCCceEEECCC-------------
Confidence 46667777 543 44888554 99999541 2222221 1122 3454 45677654
Q ss_pred ccCHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 011490 424 PVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 480 (484)
Q Consensus 424 ~~~~~~l~~ai~~vl~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 480 (484)
+.++++++|.+.|+ ++++ -+++.+++.+..+ .-+...=++.|++++.
T Consensus 513 --D~~~vA~AI~~AL~M~~~E---r~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 513 --NITEVAASIAQALNMPEEE---REKRHRHNFMHVT-----THTAQEWAETFVSELN 560 (934)
T ss_pred --CHHHHHHHHHHHHhCCHHH---HHHHHHHHHhhcc-----cCCHHHHHHHHHHHHH
Confidence 88999999999887 4432 2223333333322 3344455556665554
No 342
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=34.26 E-value=82 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
++++.+|..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 36677788888888999999999999999998554
No 343
>PRK08589 short chain dehydrogenase; Validated
Probab=34.20 E-value=1.8e+02 Score=26.89 Aligned_cols=33 Identities=27% Similarity=0.147 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|.++++- +.|.+ -..+|+.|+++|++|+++...
T Consensus 7 k~vlItG-as~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITG-ASTGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEEC-CCchH--HHHHHHHHHHCCCEEEEEeCc
Confidence 5666664 44444 578899999999999988654
No 344
>PRK04940 hypothetical protein; Provisional
Probab=34.13 E-value=89 Score=27.25 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=25.1
Q ss_pred CCeEEEecCCC-cchHHHHHHcCCCcEEEecc
Q 011490 119 KPSCLISDVCL-PWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 119 ~~D~vI~D~~~-~~a~~~A~~lgIP~v~~~~~ 149 (484)
+++++|..++- ++|.-+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 56788877754 68999999999999997554
No 345
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.12 E-value=3e+02 Score=23.60 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=45.2
Q ss_pred EEEeccccccCHHHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCC
Q 011490 214 GVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSS 293 (484)
Q Consensus 214 ~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~ 293 (484)
..++.+.++.-......+...+ |++..+|-....-... +.+++.+.+....++ +|+|++|+=-
T Consensus 51 ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~~------------~~~~i~~~I~~~~pd-iv~vglG~Pk--- 113 (172)
T PF03808_consen 51 IFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDEE------------EEEAIINRINASGPD-IVFVGLGAPK--- 113 (172)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCChh------------hHHHHHHHHHHcCCC-EEEEECCCCH---
Confidence 3455555544444445566665 6777777432211100 135566666655544 9999999632
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCC
Q 011490 294 TRQLIELGLGLEATKKPFIWVIRPG 318 (484)
Q Consensus 294 ~~~~~~~~~al~~~~~~~i~~~~~~ 318 (484)
+-.-+.+-...++..++..+|..
T Consensus 114 --QE~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 114 --QERWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred --HHHHHHHHHHHCCCCEEEEECch
Confidence 21112333345667766666553
No 346
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=34.02 E-value=3.6e+02 Score=24.46 Aligned_cols=47 Identities=13% Similarity=-0.066 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
.-+++.-.|+.|-..=.+.++.+-+++|..|.|++.+...+.+.+..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~ 68 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNM 68 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHH
Confidence 34677777899999988888877668899999999877665554433
No 347
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.99 E-value=57 Score=33.82 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEe
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFH 147 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~ 147 (484)
..+++.+++ .+||+||.++. ...+|+++|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 455667777 79999999984 3445899999998864
No 348
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.91 E-value=77 Score=30.06 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|||+++-=|+-|-..-.+.||..|+++|+.|.++=-
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 468888889999999999999999999999998844
No 349
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.91 E-value=87 Score=25.03 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHH---Hhc-CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 424 PVKKEDVKKAINM---LMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 424 ~~~~~~l~~ai~~---vl~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
.++++++.+--.. +.. .| .-.-...++++.+.+. +-|...-+++++-++.+
T Consensus 97 ~l~pdevqqf~tdlt~ltkdsp----ktqva~lrfkkvmskv---~t~vasgvr~ivvdvls 151 (160)
T COG4306 97 NLNPDEVQQFRTDLTDLTKDSP----KTQVATLRFKKVMSKV---ATSVASGVRDIVVDVLS 151 (160)
T ss_pred cCCHHHHHHHHhhHHHHhhcCc----hhHHHHHHHHHHHHHH---HHHHhcchhHHHHHHHH
Confidence 4677666554433 332 23 3333455666666555 44444446666655543
No 350
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=33.86 E-value=74 Score=30.47 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
||++++ .++++ |+.|-+ -..|++.|.++||+|+.+..
T Consensus 1 ~~~~~k----~vlVt-G~~G~I--G~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 1 MADGGK----VVCVT-GASGYI--ASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCCCCC----EEEEE-CCchHH--HHHHHHHHHHCCCEEEEEEc
Confidence 677544 44455 555655 56789999999999987653
No 351
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.45 E-value=55 Score=33.01 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 106 RLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
...+.+++++ .+||++|.... ...+|+++|||+..+
T Consensus 358 ~~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 358 HYELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 3455677777 79999999886 455799999999875
No 352
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.43 E-value=59 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
.+||++...++-+ .+=...|.+.|+++||+|.++.++...+.+...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 4678888877664 458899999999999999999998766655543
No 353
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.26 E-value=99 Score=29.61 Aligned_cols=34 Identities=18% Similarity=-0.001 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
++||+++-.|+.| ..+|..|++.||+|+++....
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 5799999887776 457788999999999998753
No 354
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=33.18 E-value=3.6e+02 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEE
Q 011490 111 TLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 111 ~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~ 145 (484)
+.+++ .+||++|..... ..+|+++|||++-
T Consensus 392 ~~l~~--~~~Dllig~s~~---~~~A~k~gIP~ld 421 (513)
T TIGR01861 392 EAMEM--LKPDIILTGKRP---GEVSKKMRVPYLN 421 (513)
T ss_pred HHHHh--cCCCEEEecCcc---chhHhhcCCCEEE
Confidence 44566 799999998863 2579999999976
No 355
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.17 E-value=69 Score=30.39 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+||+++-.|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 468888777665 4678899999999999986
No 356
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=32.98 E-value=66 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 10 HFILFPF-LAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 10 kil~~~~-~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
|++|+.. |+-|-..-..++|..++++|++|.+++....+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4555554 588999999999999999999999999876654
No 357
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=32.98 E-value=87 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=29.0
Q ss_pred cEEEEEcCC--CCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~--~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+|++.++.. +-|-..=...||..|+++|++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 555555544 6678889999999999999999988443
No 358
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.78 E-value=84 Score=28.50 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCeEEEecCC--CcchHHHHHH----cCCCcEEEecc
Q 011490 108 PLETLFKEIQPKPSCLISDVC--LPWTVSSACK----FNVPRIVFHGF 149 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~--~~~a~~~A~~----lgIP~v~~~~~ 149 (484)
.....+++ |+||++|+-+- ...+...|+. .||||++++-.
T Consensus 51 ~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 51 VVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCC
Confidence 34556677 99998885552 2334444444 49999997444
No 359
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=32.57 E-value=1.6e+02 Score=29.96 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=27.1
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 11 FILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 11 il~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|++.... .-|-..=...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 468899999999999999999999854
No 360
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=86 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=28.8
Q ss_pred cEEEEEcCC-------CCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 9 LHFILFPFL-------AQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 9 ~kil~~~~~-------~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+|++++-.| ++.|+.-++.=|.+|+++|.+..++.+
T Consensus 44 KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 44 KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 466666444 678999999999999999998777654
No 361
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.42 E-value=3.2e+02 Score=28.54 Aligned_cols=29 Identities=3% Similarity=-0.065 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 118 PKPSCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 118 ~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
.++++||.|.. +...|+++|++.+.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 69999999985 467899999999998664
No 362
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.37 E-value=68 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEe
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFH 147 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~ 147 (484)
.+.+.+++ .+||+||.++. ...+|+++|||++.++
T Consensus 353 el~~~i~~--~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAE--AAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHh--cCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 55566666 79999998873 4558999999998764
No 363
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=32.29 E-value=3.6e+02 Score=23.91 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rG--h~V~~~~~~ 45 (484)
+||+++.++.-+ .+.+|.+.+.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs---~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGS---NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEec
Confidence 379999876633 3446667777764 677776443
No 364
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.99 E-value=3.7e+02 Score=23.99 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
-+++.-.|+.|-..=.+.++..-+++|+.|.+++.+...+.+.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 4566666788998888888888888899999999877666555543
No 365
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.92 E-value=1.2e+02 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
||++..-++.|-..-...|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887654
No 366
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=31.48 E-value=66 Score=22.17 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=35.1
Q ss_pred CCCccCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 011490 421 NGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKD 478 (484)
Q Consensus 421 ~~~~~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 478 (484)
++|.++.+++.+.++.+.... . .....++.+.+-+.++..+.+..+.++|.+.
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~----~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDM----S-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHS----T-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcccc----c-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 467899999999999887532 1 2334444444444447777777777777664
No 367
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=31.34 E-value=83 Score=29.26 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
|.|.+.-=|+-|-..-...||..|+++|+.|.++=
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 45777777799999999999999999999999883
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.20 E-value=59 Score=30.79 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+||+++-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777766665 5688899999999999986
No 369
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.14 E-value=89 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.7
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|.++.+ |.++++ ++.|.+ -..+|+.|+++|++|+++..
T Consensus 1 ~~~~~~---k~vlVT-Gas~gI--G~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 1 MDGFPG---RGAVIT-GGASGI--GLATGTEFARRGARVVLGDV 38 (275)
T ss_pred CCCcCC---CEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 555544 566666 444555 46789999999999987753
No 370
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=31.06 E-value=73 Score=33.06 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEec
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHG 148 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~ 148 (484)
.+.+.+++ .+||+||.++. ...+|+++|||++.++.
T Consensus 355 ei~~~i~~--~~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHh--cCCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 45556666 78999999983 45578999999987543
No 371
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.94 E-value=61 Score=22.89 Aligned_cols=19 Identities=32% Similarity=0.301 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 011490 25 MIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 25 ~l~La~~L~~rGh~V~~~~ 43 (484)
-+..|..|+++|++|+++=
T Consensus 8 Gl~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 4678999999999999984
No 372
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.89 E-value=74 Score=32.14 Aligned_cols=36 Identities=8% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEEec
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVFHG 148 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~~~ 148 (484)
.+.+++++ .+||++|.+... ..+|+++|+|++.++.
T Consensus 361 e~~~~i~~--~~pdliig~~~~---~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIAR--TEPELIFGTQME---RHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHh--hCCCEEEecchh---hHHHHHcCCCEEEEeC
Confidence 45566676 789999999843 3468999999998643
No 373
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.76 E-value=1.5e+02 Score=26.13 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=46.6
Q ss_pred hHHHHHHcCCCEeccccccch-hhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHhcCChhHHHHH
Q 011490 370 SVLEAVSNGLPMVTWPFFADQ-FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERR 448 (484)
Q Consensus 370 s~~eal~~GvP~l~~P~~~DQ-~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~r 448 (484)
++.++++-+.=.+..|+..=+ |...-.+. | +--.-...-+++.+-|-++.++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~-----a--------------------vi~gl~~~i~~~~liD~ekm~~~q 78 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA-----A--------------------VITGLYITILQKLLIDQEKMKELQ 78 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH-----H--------------------HHHHHHHHHHHHHhccHHHHHHHH
Confidence 566666666666666655433 44444443 1 122234445667777888888999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 011490 449 RRAREYGETAKTAIEEGG 466 (484)
Q Consensus 449 ~~a~~l~~~~~~~~~~gg 466 (484)
+.++++++++++|-++|.
T Consensus 79 k~m~efq~e~~eA~~~~d 96 (201)
T COG1422 79 KMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999955554
No 374
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.58 E-value=3.3e+02 Score=23.47 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=56.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccch
Q 011490 15 PFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMAL 94 (484)
Q Consensus 15 ~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (484)
++-..--.--..+...+|+..|..|+++++ ..+.++....+. .++.|+.-. ...+
T Consensus 41 ~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN-n~e~RV~~~~~~-----l~v~fi~~A-------------------~KP~ 95 (175)
T COG2179 41 PWDNPDATPELRAWLAELKEAGIKVVVVSN-NKESRVARAAEK-----LGVPFIYRA-------------------KKPF 95 (175)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCEEEEEeC-CCHHHHHhhhhh-----cCCceeecc-------------------cCcc
Confidence 333333344567788899999999999986 566667665432 245554310 0011
Q ss_pred HHHHHHHHHHchHHHHHHHHhcCCCC--eEEEecCCCcchHHHHHHcCCCcEEEecc
Q 011490 95 LPKFFAAIEMLRLPLETLFKEIQPKP--SCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~~~--D~vI~D~~~~~a~~~A~~lgIP~v~~~~~ 149 (484)
... +++.++++..++ -++|.|..+. -...+...|+-+|.+-|.
T Consensus 96 ~~~-----------fr~Al~~m~l~~~~vvmVGDqL~T-DVlggnr~G~~tIlV~Pl 140 (175)
T COG2179 96 GRA-----------FRRALKEMNLPPEEVVMVGDQLFT-DVLGGNRAGMRTILVEPL 140 (175)
T ss_pred HHH-----------HHHHHHHcCCChhHEEEEcchhhh-hhhcccccCcEEEEEEEe
Confidence 222 233344322233 3677888653 456788899999986443
No 375
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.53 E-value=2.4e+02 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCCccccccccc------hhhHHHHHHcCCCEecccc
Q 011490 355 SHPAIGGFLTHCG------WNSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 355 ~~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P~ 386 (484)
.++.+ +++|.| .+++++|...++|+|++.-
T Consensus 83 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G 118 (587)
T PRK06965 83 GKVGV--ALVTSGPGVTNAVTGIATAYMDSIPMVVISG 118 (587)
T ss_pred CCCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEec
Confidence 34555 888877 4578899999999999963
No 376
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.51 E-value=80 Score=20.30 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDEGEERDERRRRAREYG 455 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~ 455 (484)
++++|.+||..+.++. -.+++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHC
Confidence 5789999999998652 26777666654
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=30.47 E-value=4.4e+02 Score=24.37 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
-+++.-.|+.|-..=.+.++...+++|..|.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 36666777999999999999998889999999998643
No 378
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=30.39 E-value=82 Score=32.17 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=23.6
Q ss_pred HhcCCCCeEEEecCC--CcchHHHHHHcCCCcEEEecc
Q 011490 114 KEIQPKPSCLISDVC--LPWTVSSACKFNVPRIVFHGF 149 (484)
Q Consensus 114 ~~~~~~~D~vI~D~~--~~~a~~~A~~lgIP~v~~~~~ 149 (484)
++.+.+||+|+..+. ...|.++++++|||...+..+
T Consensus 396 ~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 396 AELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp HHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred HHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 333468999997763 257889999999998886444
No 379
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.12 E-value=94 Score=23.18 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=27.7
Q ss_pred cEEEEEcCCCC--CCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 9 LHFILFPFLAQ--GHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 9 ~kil~~~~~~~--GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
-+|+++|.... .+..-...|+..|++.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888886643 466778999999999999998854
No 380
>PRK06194 hypothetical protein; Provisional
Probab=30.10 E-value=94 Score=29.02 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=25.5
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|.++.+ |.++++ |+.|-+ -..|++.|.++|++|+++..
T Consensus 1 m~~~~~---k~vlVt-GasggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 1 MKDFAG---KVAVIT-GAASGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CcCCCC---CEEEEe-CCccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 555433 455555 444544 46788999999999988764
No 381
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.98 E-value=83 Score=30.16 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhh
Q 011490 291 DSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNS 370 (484)
Q Consensus 291 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s 370 (484)
..+.+....+.+++.....+.||.+.++... ..+.++++...+-.+|.+ ||=..=..+
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~--------------------~rlL~~lD~~~i~~~PK~--fiGySDiTa 106 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDDS--------------------NELLPYLDYELIKKNPKI--FIGYSDITA 106 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccCH--------------------hhhhhhcCHHHHhhCCCE--EEeccHHHH
Confidence 3456677889999999999999999887432 134455555555566666 666666666
Q ss_pred HHHHHH--cCCCEeccccc
Q 011490 371 VLEAVS--NGLPMVTWPFF 387 (484)
Q Consensus 371 ~~eal~--~GvP~l~~P~~ 387 (484)
++-+++ .|++.+--|..
T Consensus 107 L~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 107 LHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHHHhcCCeEEECccc
Confidence 666653 36666655654
No 382
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=29.89 E-value=1.3e+02 Score=32.73 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
|+||-|=..|+-|-.+-|+.=|++|.+.|.+|.+-.-+.
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEt 60 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVET 60 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 699999999999999999999999999999999886544
No 383
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.87 E-value=74 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 17 LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 17 ~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
-..-.+...+-+...|.++|.+|++.+++
T Consensus 13 eiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 13 EIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred CCCccchHHHHHHHHhhccCccEEEecCH
Confidence 36677888899999999999999999988
No 384
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=29.84 E-value=95 Score=26.87 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCC
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPA 358 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~ 358 (484)
+.+-.+++|.++ .++++-++..|.+++..-..... ...+ ...++ .+.+..++|+.++
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~---------~~~~----~~~~~---~~~~l~ell~~aD 93 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKP---------EEGA----DEFGV---EYVSLDELLAQAD 93 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHH---------HHHH----HHTTE---EESSHHHHHHH-S
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCCh---------hhhc----ccccc---eeeehhhhcchhh
Confidence 448888999887 45666666778887766544320 0001 11122 5668889999999
Q ss_pred ccccccccchhhHHHHHHcCCCEecccccc--chhhHHHHHHHHhcce-eEeccCCCCCCcccccCCCccCHHHHHHHHH
Q 011490 359 IGGFLTHCGWNSVLEAVSNGLPMVTWPFFA--DQFCNEKLVVQVLRIG-VTIGAERPPSLADEERNGVPVKKEDVKKAIN 435 (484)
Q Consensus 359 ~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~e~~G~g-~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 435 (484)
+ ++.|+ |... .+..|+..+ +.++=| +.++.. +++.+++++|.++++
T Consensus 94 i--v~~~~------------------plt~~T~~li~~~~l-~~mk~ga~lvN~a----------RG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 94 I--VSLHL------------------PLTPETRGLINAEFL-AKMKPGAVLVNVA----------RGELVDEDALLDALE 142 (178)
T ss_dssp E--EEE-S------------------SSSTTTTTSBSHHHH-HTSTTTEEEEESS----------SGGGB-HHHHHHHHH
T ss_pred h--hhhhh------------------ccccccceeeeeeee-eccccceEEEecc----------chhhhhhhHHHHHHh
Confidence 8 87776 5544 578889999 488866 444444 134788888888875
Q ss_pred H
Q 011490 436 M 436 (484)
Q Consensus 436 ~ 436 (484)
.
T Consensus 143 ~ 143 (178)
T PF02826_consen 143 S 143 (178)
T ss_dssp T
T ss_pred h
Confidence 4
No 385
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.82 E-value=1.1e+02 Score=30.47 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHchHHHHHHHHhcCCCCeEEEecCCCcc------hH----HHHHHcCCCcEEE
Q 011490 103 EMLRLPLETLFKEIQPKPSCLISDVCLPW------TV----SSACKFNVPRIVF 146 (484)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~D~vI~D~~~~~------a~----~~A~~lgIP~v~~ 146 (484)
+.....+.+++++ .+||++|+-+.+.. +. .+.+++|||.++-
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 62 EEAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4455777888888 89999999985421 11 2456799999973
No 386
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=29.62 E-value=74 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEecC---CCcchHHHHHHcCCCcE
Q 011490 107 LPLETLFKEIQPKPSCLISDV---CLPWTVSSACKFNVPRI 144 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~---~~~~a~~~A~~lgIP~v 144 (484)
+.+.++.++ .++|+||+.+ +..+....-+..|||++
T Consensus 52 ~~l~~~a~~--~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 52 EELADFAKE--NKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHH--TTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHH--cCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 345666777 8999999998 33466778888999965
No 387
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.61 E-value=1.1e+02 Score=30.46 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHchHHHHHHHHhcCCCCeEEEecCCCcc------hH----HHHHHcCCCcEEE
Q 011490 103 EMLRLPLETLFKEIQPKPSCLISDVCLPW------TV----SSACKFNVPRIVF 146 (484)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~D~vI~D~~~~~------a~----~~A~~lgIP~v~~ 146 (484)
+.....+.+++++ .+||++|+-+.+.. +. .+.+++|||.++-
T Consensus 62 eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 62 EEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4455777888888 89999999985421 11 2456799999973
No 388
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=29.42 E-value=1.7e+02 Score=30.23 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHH
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~ 55 (484)
-+++.-.|+.|-..=+..++.+.+++|..|.+++.+...+.+.+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 4666777788999999999999999999999999876666555443
No 389
>PRK03094 hypothetical protein; Provisional
Probab=29.19 E-value=51 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 011490 25 MIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 25 ~l~La~~L~~rGh~V~~~~~~ 45 (484)
+-.+.++|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456899999999999877553
No 390
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.07 E-value=2.8e+02 Score=29.18 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 67 ~~gv--~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGV--VLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeE--EEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 3444 8888774 47889999999999985
No 391
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.02 E-value=2.7e+02 Score=29.38 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCCccccccccc------hhhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCG------WNSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.| .+++.+|...++|+|++-
T Consensus 67 ~~gv--~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 67 KTGV--VLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3555 888877 458899999999999994
No 392
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.83 E-value=78 Score=26.25 Aligned_cols=21 Identities=38% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 011490 26 IDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 26 l~La~~L~~rGh~V~~~~~~~ 46 (484)
.-+|..|++.||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 357899999999999999875
No 393
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=28.77 E-value=1.2e+02 Score=28.70 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCCCccccccccchhhHHHHHHc----CCCEeccc
Q 011490 355 SHPAIGGFLTHCGWNSVLEAVSN----GLPMVTWP 385 (484)
Q Consensus 355 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P 385 (484)
..+++ +|+-||=||+++++.. ++|++.+-
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 35667 9999999999999773 67887764
No 394
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.67 E-value=69 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 23 IPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 23 ~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
.|.+.|+++|.++|.+|.+.=+-........
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 7999999999999999988755433333333
No 395
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.64 E-value=99 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
|+|.++-=|+-|-..=.+.||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3577776678899999999999999999999988
No 396
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.59 E-value=2.8e+02 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++.+|...++|+|++-
T Consensus 67 ~~gv--~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGC--VLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 8888774 47889999999999984
No 397
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57 E-value=2.9e+02 Score=23.63 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCCccccccccc---hhhHHHHHHcCCCEecccccc-chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHH
Q 011490 355 SHPAIGGFLTHCG---WNSVLEAVSNGLPMVTWPFFA-DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 430 (484)
Q Consensus 355 ~~~~~~~~I~HgG---~~s~~eal~~GvP~l~~P~~~-DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l 430 (484)
.||++++-+--.| .-|+.|--.+|.=.+.==-+. =+..|+++. ++.|.=-.+--+ ..+.++|
T Consensus 71 aHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-------------g~~k~~I 136 (176)
T COG3195 71 AHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-------------GNTKDTI 136 (176)
T ss_pred hChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-------------CCCHHHH
Confidence 4777743333333 347777788887655321111 256799999 699988666555 4689999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 011490 431 KKAINMLMDEGEERDERRRRAREYGETAK 459 (484)
Q Consensus 431 ~~ai~~vl~~~~~~~~~r~~a~~l~~~~~ 459 (484)
.++..+-++|. +.++++..+.++.++..
T Consensus 137 l~a~~~Rl~n~-~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 137 LAAFERRLDND-REQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHhccc-HHHHHHHHHHHHHHHHH
Confidence 99999999875 44566666666666544
No 398
>PRK07064 hypothetical protein; Provisional
Probab=28.47 E-value=3.3e+02 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 66 ~~~v--~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 66 GLGV--ALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CCeE--EEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3555 8888884 48889999999999984
No 399
>PRK12744 short chain dehydrogenase; Provisional
Probab=28.41 E-value=2.6e+02 Score=25.48 Aligned_cols=39 Identities=28% Similarity=0.132 Sum_probs=24.5
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
|.++.- +-|.++++-.+.| =-..+|+.|+++|++|.+++
T Consensus 1 ~~~~~l-~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 1 MADHSL-KGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCCC-CCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 555432 2245556544332 34678999999999977665
No 400
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.33 E-value=2.1e+02 Score=30.13 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred CCCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 355 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 355 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
..+.+ +++|.|- +.+++|...++|+|++.-
T Consensus 62 gk~gv--~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G 97 (575)
T TIGR02720 62 GKIGV--CFGSAGPGATHLLNGLYDAKEDHVPVLALVG 97 (575)
T ss_pred CCceE--EEeCCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 34555 8888874 588899999999999953
No 401
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=28.18 E-value=1e+02 Score=28.16 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
.++|+++..--.-=..-+-.....|+++||+|++++-
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 6677666543333345566667777999999999974
No 402
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=28.16 E-value=2.9e+02 Score=26.83 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCC-eEEEEeC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGA-LVTIVTT 44 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh-~V~~~~~ 44 (484)
..||+++-.++.| -.+|+.|++.|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4688998888766 678999999998 6666643
No 403
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=28.13 E-value=1.7e+02 Score=26.29 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=35.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHC-CCeEEEEeCCCchhhhhHHHh
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQNVIE 56 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~r-Gh~V~~~~~~~~~~~v~~~~~ 56 (484)
.-+++.-.|+.|-..=.+.++.+-+++ |..|.+++.....+.+.+...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 356777788999999999988877777 999999998777666655544
No 404
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=28.13 E-value=45 Score=33.20 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=21.8
Q ss_pred CCCHHHHH---HHHHHHHHCCCeEEEEeCCC
Q 011490 19 QGHMIPMI---DIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 19 ~GHv~P~l---~La~~L~~rGh~V~~~~~~~ 46 (484)
.||+.|++ .+|+-++.+||+|.|++..+
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 39999777 57888888999999998644
No 405
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.93 E-value=1.5e+02 Score=24.18 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhh
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v 51 (484)
+|++-+..+.+|-.----++..|...|++|+.....-..+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 488899999999999999999999999999999775544433
No 406
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.90 E-value=98 Score=31.01 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.5
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 8 QLHFILFPF--LAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 8 ~~kil~~~~--~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+++|+.+.. |+-|-..-.+.||..|+.+|+.|.++=.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDl 158 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDL 158 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcC
Confidence 456655554 5889999999999999999999999843
No 407
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=27.86 E-value=3.1e+02 Score=31.53 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCC--CCH----HHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQ--GHM----IPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~--GHv----~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+.||+++-.+.. |.- +..+.++++|++.||+|.++...
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 568999887643 432 46789999999999999998764
No 408
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.63 E-value=3e+02 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCCCHHHHHH---HHHHHHHCCCeEEEEeCCC
Q 011490 18 AQGHMIPMID---IARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 18 ~~GHv~P~l~---La~~L~~rGh~V~~~~~~~ 46 (484)
=.||+.+++. |++-|+.+|++|.+++.-.
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~d 66 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNIT 66 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeecC
Confidence 3599988763 6777777899999997643
No 409
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.50 E-value=93 Score=25.64 Aligned_cols=34 Identities=24% Similarity=0.076 Sum_probs=29.2
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 12 ILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 12 l~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+++.++..--++|..-++...++.|++|++..+.
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 3445578889999999999999999999998774
No 410
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=27.50 E-value=2.4e+02 Score=29.64 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=22.6
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 73 ~~gv--~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 73 KLGV--AVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 8888884 47889999999999995
No 411
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=27.47 E-value=58 Score=29.15 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCc---c----hHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLP---W----TVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~---~----a~~~A~~lgIP~v~~ 146 (484)
+.+.+.++++...||+||+|..-. - |..+...+++|+|-+
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 345555666446799999999532 2 334444566787753
No 412
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.32 E-value=1.3e+02 Score=24.03 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 17 LAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 17 ~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
...|+...++.+.+.++++|..|..+|......
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 368899999999999999999998888765444
No 413
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.27 E-value=1.1e+02 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
|||.++ +.||+ -+.+|-.|+++||+|+.+= .+.+.++..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D--~~~~~v~~l 39 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVD--IDEEKVEAL 39 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE---S-HHHHHHH
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEe--CChHHHHHH
Confidence 456666 45555 4788999999999999874 334444443
No 414
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=27.27 E-value=2.6e+02 Score=27.69 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (484)
+|+++.. +-.-.+.|++.|.+-|-+|..+........-.+......... ......
T Consensus 272 ~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~~------------------- 326 (398)
T PF00148_consen 272 KRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVII------------------- 326 (398)
T ss_dssp -EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEEE-------------------
T ss_pred ceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEEe-------------------
Confidence 4677643 336677888999988998888876544322211111000000 001100
Q ss_pred CCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
......+.+.+++ .+||++|.+.. ...+|+++++|++.+
T Consensus 327 --------------~~~~~~~~~~l~~--~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 327 --------------DPDPEEIEELLEE--LKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp --------------SCBHHHHHHHHHH--HT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred --------------CCCHHHHHHHHHh--cCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 0012345667777 79999999986 566788899998873
No 415
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=27.24 E-value=99 Score=29.68 Aligned_cols=37 Identities=5% Similarity=-0.138 Sum_probs=28.0
Q ss_pred cEEEEEcCC---CCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFL---AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~---~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|||+|+.-| ---+..-.++|.++.++|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 356666654 2234557789999999999999999876
No 416
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=27.23 E-value=2.4e+02 Score=27.37 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCC------------h---hhhcC--
Q 011490 293 STRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAP------------Q---VVILS-- 355 (484)
Q Consensus 293 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~p------------q---~~ll~-- 355 (484)
...+++.+++.|++.|+.+++.++..... .++.+..+-+...+..+-. + ..+..
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~~~---------~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~ 82 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKDET---------EELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKF 82 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccchH---------HHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678889999999999999888765421 1222222223333322211 1 11223
Q ss_pred CCCccccccccchhhHHHHHHcCCCEecc
Q 011490 356 HPAIGGFLTHCGWNSVLEAVSNGLPMVTW 384 (484)
Q Consensus 356 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 384 (484)
.|++ +|++|+.-...-|...|+|.|.+
T Consensus 83 ~pDv--~is~~s~~a~~va~~lgiP~I~f 109 (335)
T PF04007_consen 83 KPDV--AISFGSPEAARVAFGLGIPSIVF 109 (335)
T ss_pred CCCE--EEecCcHHHHHHHHHhCCCeEEE
Confidence 6888 99999988888888899997665
No 417
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=27.20 E-value=1.5e+02 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=20.8
Q ss_pred CcEEEEecCCCccCCHHHHHHHHHHHHhC
Q 011490 279 GSAVYVCLGSLCDSSTRQLIELGLGLEAT 307 (484)
Q Consensus 279 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 307 (484)
+..+|+++||......+.+...++.+...
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 33799999998765556666677777653
No 418
>PLN02293 adenine phosphoribosyltransferase
Probab=26.96 E-value=1.5e+02 Score=26.08 Aligned_cols=43 Identities=5% Similarity=-0.094 Sum_probs=30.3
Q ss_pred HHHchHHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEEE
Q 011490 102 IEMLRLPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~~ 146 (484)
+....+.+.+.+++ .++|+|++=. -.+.|..+|..+|+|++.+
T Consensus 47 ~~~~~~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 47 FKDTIDLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 33455555666666 6899988543 3457889999999998863
No 419
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.95 E-value=92 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
..+.+.+++ .+||++|.+... ..+|+++|||++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECchh---HHHHHhcCCCEEEe
Confidence 345566777 789999999864 56789999999874
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=26.83 E-value=1.2e+02 Score=27.82 Aligned_cols=32 Identities=28% Similarity=0.172 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
|.++++-.+. . --..+|+.|+++|++|++..-
T Consensus 7 k~vlItGas~-g--IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGAT-L--IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEeC
Confidence 5666664443 2 467889999999999988754
No 421
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=26.82 E-value=4.1e+02 Score=28.10 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 355 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 355 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
.++.+ +++|.|- +.+++|...++|+|++-
T Consensus 67 g~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 67 GRMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34555 8888884 57889999999999995
No 422
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=26.57 E-value=88 Score=27.17 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
...++|+-.++.|-..=..++|+++.++|+.|.|++.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 45788998899999999999999999999999999865
No 423
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=26.51 E-value=1.5e+02 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=30.1
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Q 011490 8 QLHFILFPF--LAQGHMIPMIDIARLLAQ-HGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~--~~~GHv~P~l~La~~L~~-rGh~V~~~~~~ 45 (484)
..|++.++. ++-|-..=...||..|++ +|++|.++=..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456666654 588899999999999997 69999998443
No 424
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.38 E-value=3.6e+02 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEeccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 385 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 385 (484)
++.+ +++|.|- +++++|...++|+|++-
T Consensus 67 ~~gv--~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 67 EVGV--VLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred CceE--EEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 3444 7888774 47889999999999994
No 425
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=26.20 E-value=1.9e+02 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 355 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 355 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
.++.+ +++|.|- +++.+|...++|+|++.-
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 44555 8888874 578899999999999875
No 426
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=26.18 E-value=1.1e+02 Score=24.42 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
...|+++++++. +...+..+++|.+.|.++.++.
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEe
Confidence 357899998877 5778999999999999888875
No 427
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.80 E-value=2e+02 Score=24.56 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC-chhhhhHH
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM-NAARFQNV 54 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~-~~~~v~~~ 54 (484)
+++++ +.|++.| |+..|+++|.+|..++.+. ....+.+.
T Consensus 109 ~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 109 VALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred EEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 45554 3667655 6788889999999999653 45555555
No 428
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=25.76 E-value=6.3e+02 Score=24.59 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEEEecCCCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCcc
Q 011490 281 AVYVCLGSLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIG 360 (484)
Q Consensus 281 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~ 360 (484)
++.|..+.+.+ ..+++++.+++.+++.+.+-.. ++.+|+.... + +....+-.
T Consensus 179 ~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~~---ti~E~l~A~e--------------~-----i~~~GN~~ 230 (335)
T PRK08673 179 ILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMSA---TIEEWLMAAE--------------Y-----ILAEGNPN 230 (335)
T ss_pred eEEECcccccC------HHHHHHHHcCCCcEEEeCCCCC---CHHHHHHHHH--------------H-----HHHcCCCe
Confidence 56676666554 3467777788889888877542 2334311110 0 11111111
Q ss_pred ccccccchhhH------------HHHH--HcCCCEeccccccch-----hhHHHHHHHHhcc-eeEeccCCCCCCccccc
Q 011490 361 GFLTHCGWNSV------------LEAV--SNGLPMVTWPFFADQ-----FCNEKLVVQVLRI-GVTIGAERPPSLADEER 420 (484)
Q Consensus 361 ~~I~HgG~~s~------------~eal--~~GvP~l~~P~~~DQ-----~~na~~~~e~~G~-g~~l~~~~~~~~~~~~~ 420 (484)
.+++|||..|. ...+ .++.|+++-|-+.-- +..+...+ .+|+ |+.+.....++-+- .+
T Consensus 231 viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~pd~al-sD 308 (335)
T PRK08673 231 VILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPDPEKAL-SD 308 (335)
T ss_pred EEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCCcccCC-Cc
Confidence 27777765222 1111 357999998876522 34555554 6777 46665443333222 12
Q ss_pred CCCccCHHHHHHHHHHH
Q 011490 421 NGVPVKKEDVKKAINML 437 (484)
Q Consensus 421 ~~~~~~~~~l~~ai~~v 437 (484)
....++++++++-++.+
T Consensus 309 ~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 309 GPQSLTPEEFEELMKKL 325 (335)
T ss_pred chhcCCHHHHHHHHHHH
Confidence 22346666666555443
No 429
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=25.73 E-value=87 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
.++|+++-++++||- -|.-|++-|++|++...+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 468999999999985 57889999999999976554
No 430
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.72 E-value=1.4e+02 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 1 m~~~~~~~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
|+.++. +++|++ +..+.|-+- -+||+++++.|+.|.-.+
T Consensus 1 ~e~~~~-~k~VlI-tgcs~GGIG--~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQ-PKKVLI-TGCSSGGIG--YALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccC-CCeEEE-eecCCcchh--HHHHHHHHhCCeEEEEEc
Confidence 444444 444554 444454442 378999999999987654
No 431
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=25.64 E-value=4.6e+02 Score=23.01 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCC--eEEEEeCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGA--LVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh--~V~~~~~~ 45 (484)
+||+++.++.-+ .+.+|.+.+++.++ +|.++.+.
T Consensus 1 ~riail~sg~gs---~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGS---NLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCCh---hHHHHHHHHHcCCCCceEEEEEEC
Confidence 478888875443 45567777877665 66665443
No 432
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.62 E-value=1.7e+02 Score=21.41 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
+++...++.|-..-...|+..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666688889999999999999999998875
No 433
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.58 E-value=1.3e+02 Score=26.62 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEEE
Q 011490 106 RLPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~~ 146 (484)
...+.+.+++ .++|+|++-. -++.|..+|..+|+|++..
T Consensus 39 ~~~l~~~~~~--~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 39 GEEFARRFAD--DGITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 3444444455 6899998543 3367888999999999984
No 434
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.30 E-value=83 Score=30.07 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
++||.|+-.|..| .++|+.|+++||+|+++...
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 5689999877766 57899999999999988754
No 435
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=25.21 E-value=3.7e+02 Score=23.59 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=41.8
Q ss_pred ccccccchhhHHHHHHHHhcceeEecc----CCCCCCcccccCCCccCHHHHH----HHHHHHhcCChhHHHHHHHHHHH
Q 011490 383 TWPFFADQFCNEKLVVQVLRIGVTIGA----ERPPSLADEERNGVPVKKEDVK----KAINMLMDEGEERDERRRRAREY 454 (484)
Q Consensus 383 ~~P~~~DQ~~na~~~~e~~G~g~~l~~----~~~~~~~~~~~~~~~~~~~~l~----~ai~~vl~~~~~~~~~r~~a~~l 454 (484)
++|.+.||...-..+-|-..+|+.... .+..+-+= ..++.+.++ +.|.++|.|+ .+-+|-+|+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF-----~~Fd~~~VA~~~e~die~Ll~d~----~IIRnr~KI 92 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF-----HQFDPVKVAAMQEEDVERLVQDA----GIIRHRGKI 92 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-----cCCCHHHHhCCCHHHHHHHhcCc----hhHHhHHHH
Confidence 456678887776655577888876531 10000000 135555555 5666777777 443333444
Q ss_pred HHHHHHH------HhhCCChHHHH
Q 011490 455 GETAKTA------IEEGGSSYLNI 472 (484)
Q Consensus 455 ~~~~~~~------~~~gg~~~~~~ 472 (484)
...+..| .+|+||....+
T Consensus 93 ~Avi~NA~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 93 QAIIGNARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3332211 23577766655
No 436
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.94 E-value=4.3e+02 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=17.0
Q ss_pred cCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011490 425 VKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 461 (484)
Q Consensus 425 ~~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~ 461 (484)
.++.-++..|-. ++|+ +++++.+.+++.+++.
T Consensus 116 ~nAa~~AaqIl~-~~d~----~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 116 GNAALLAAQILG-IKDP----ELAEKLKEYRENQKEE 147 (156)
T ss_pred hHHHHHHHHHHc-CCCH----HHHHHHHHHHHHHHHH
Confidence 445544444422 2344 6666666666666544
No 437
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.90 E-value=1.6e+02 Score=25.13 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=30.7
Q ss_pred chHHHHHHHHhcCCCCeEEEecCCC---cchHHHHHHcCCCcEEE
Q 011490 105 LRLPLETLFKEIQPKPSCLISDVCL---PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 105 ~~~~l~~~l~~~~~~~D~vI~D~~~---~~a~~~A~~lgIP~v~~ 146 (484)
....+.+++++ .+||+|+..... ..+..+|.++|.|+++-
T Consensus 71 ~a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtd 113 (168)
T cd01715 71 YAPALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISD 113 (168)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceee
Confidence 34456667777 789999977743 35788999999999984
No 438
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.76 E-value=5.1e+02 Score=24.16 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCC-e-EEEEeCCCch----hhhhHHHhhcccCCCceEEEEeeCCCccCCCCCCCCccCCCCccch
Q 011490 21 HMIPMIDIARLLAQHGA-L-VTIVTTPMNA----ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMAL 94 (484)
Q Consensus 21 Hv~P~l~La~~L~~rGh-~-V~~~~~~~~~----~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (484)
|..-....++.|.++|| + |.+++.+... ++.+.+.......|..++-..+- .+ ..+
T Consensus 102 ~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~---------~~--------~~~- 163 (279)
T PF00532_consen 102 NYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIF---------EG--------DFD- 163 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEE---------ES--------SSS-
T ss_pred chHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCccccc---------cc--------CCC-
Confidence 56778899999999999 5 7787765532 23322222222222212222111 00 001
Q ss_pred HHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcC---CCcEE
Q 011490 95 LPKFFAAIEMLRLPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFN---VPRIV 145 (484)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lg---IP~v~ 145 (484)
.......++++++. ...+|+||+.. ...++..+++..| +|--.
T Consensus 164 -------~~~g~~~~~~ll~~-~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 164 -------YESGYEAARELLES-HPDIDAIFCANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp -------HHHHHHHHHHHHHT-STT-SEEEESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred -------HHHHHHHHHHHHhh-CCCCEEEEEeCHHHHHHHHHHHHHcCCcccChhh
Confidence 11223445677777 12334999877 3456677888877 77655
No 439
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=24.73 E-value=1.5e+02 Score=26.70 Aligned_cols=27 Identities=33% Similarity=0.154 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 17 LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 17 ~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
++.|.+ -..|++.|.++|++|+.+...
T Consensus 13 Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 13 GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 556666 678899999999999887654
No 440
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=24.64 E-value=1.1e+02 Score=31.66 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
.+++++.. .+||++|.+.. +..+|+++|||++.+
T Consensus 428 ~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 34555555 78999998875 356899999999874
No 441
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=24.61 E-value=3e+02 Score=21.98 Aligned_cols=21 Identities=33% Similarity=0.251 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 011490 26 IDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 26 l~La~~L~~rGh~V~~~~~~~ 46 (484)
..+-+.|+++|+.+.+++...
T Consensus 31 ~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 31 PDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHHHHHHHHCCCEEEEEECCc
Confidence 456688889999999998865
No 442
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=24.56 E-value=1.3e+02 Score=26.81 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEE
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~ 42 (484)
+...+++-+...|-..-...+|+.|+++|+.|.+.
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEec
Confidence 45666666788998888889999999999777763
No 443
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.55 E-value=95 Score=30.53 Aligned_cols=91 Identities=22% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCccCCHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhh-----hHHHHHhcCCCeEeeCcCCh---hhhcCCCCc
Q 011490 288 SLCDSSTRQLIELGLGLEATKKPFIWVIRPGDQAKGLEDWLLA-----EKFEERIEGRGLLIRGWAPQ---VVILSHPAI 359 (484)
Q Consensus 288 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~nv~~~~~~pq---~~ll~~~~~ 359 (484)
|........+..++++++..+.++...+..+....++..| ++ .+-....+.-.+.+.+|+|| +.+|-.|++
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~ 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc
Q ss_pred cccccccchhhHHHHHHcCCCEe
Q 011490 360 GGFLTHCGWNSVLEAVSNGLPMV 382 (484)
Q Consensus 360 ~~~I~HgG~~s~~eal~~GvP~l 382 (484)
-+-.|== |..-|..+|+|.|
T Consensus 267 --NfVRGED-SfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 --NFVRGED-SFVRAQWAGKPFV 286 (374)
T ss_pred --ceEecch-HHHHHHHhCCCce
No 444
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=75 Score=32.39 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+||+++-.|-. -++=|.+|+++||+||++=.
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEEec
Confidence 36777665544 47889999999999999843
No 445
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.51 E-value=1.2e+02 Score=30.78 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcchHHHHHHcCCCcEEE
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~lgIP~v~~ 146 (484)
.+++++++ .++|++|.++. ...+|+++|||++.+
T Consensus 364 ~l~~~i~~--~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACA--AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhh--cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 55667777 78999998875 356899999999874
No 446
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.45 E-value=1.9e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
|.++++ |+.|.+- ..+++.|+++|++|+++...
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 566666 4455554 78899999999999988765
No 447
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=24.42 E-value=1.7e+02 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
.+++++..+. =+-|++.++++|.++|++|+++.....
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 3788887554 489999999999999999988765443
No 448
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.33 E-value=1.2e+02 Score=21.97 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCC
Q 011490 24 PMIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 24 P~l~La~~L~~rGh~V~~~~~~~ 46 (484)
-.+.+|..|+++|++|+++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45889999999999999997643
No 449
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=24.33 E-value=2.1e+02 Score=26.65 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=42.5
Q ss_pred cCHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Q 011490 425 VKKEDVKKAINMLMD--EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 482 (484)
Q Consensus 425 ~~~~~l~~ai~~vl~--~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 482 (484)
.+-+.+.++|.++|+ |...++..+++-+++.+.+...-.+-||+...+.-|++.|..+
T Consensus 82 e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~L 141 (302)
T PTZ00119 82 DDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNL 141 (302)
T ss_pred cchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 455677788888863 5555556666777777777765566799999999888888765
No 450
>PRK07586 hypothetical protein; Validated
Probab=24.32 E-value=3.4e+02 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCccccccccchh------hHHHHHHcCCCEecccc
Q 011490 356 HPAIGGFLTHCGWN------SVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 356 ~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P~ 386 (484)
++.+ ++.|.|-| ++.+|...++|+|++.-
T Consensus 64 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G 98 (514)
T PRK07586 64 KPAA--TLLHLGPGLANGLANLHNARRARTPIVNIVG 98 (514)
T ss_pred CCEE--EEecccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 4444 66776644 56689999999999853
No 451
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.30 E-value=70 Score=23.68 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 011490 25 MIDIARLLAQHGALVTIVTTPM 46 (484)
Q Consensus 25 ~l~La~~L~~rGh~V~~~~~~~ 46 (484)
+-.+.++|+++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887654
No 452
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=24.16 E-value=1.5e+02 Score=29.07 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+++|+++ |+.|.+ -..|++.|.++||+|+.+..
T Consensus 21 ~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 21 KLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 6787765 666665 45789999999999998864
No 453
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.06 E-value=1.1e+02 Score=27.99 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCeEEEecCCCcc--hH-HHHHHcCCCcEEEec
Q 011490 108 PLETLFKEIQPKPSCLISDVCLPW--TV-SSACKFNVPRIVFHG 148 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~--a~-~~A~~lgIP~v~~~~ 148 (484)
.++.+++ .+||+||....... .. .+.+.+|||++.+..
T Consensus 66 n~E~i~~---l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAA---LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHh---cCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4455555 49999998765332 12 244458999988653
No 454
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.00 E-value=4.6e+02 Score=22.44 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=43.5
Q ss_pred EEEeccccccCHHHHHHHHhccCCceEEeCcccCCCcccchhhccCCCCCCCCcccccccCCCCCCcEEEEecCCCccCC
Q 011490 214 GVIVNSFEEMEPAYVEEYKNARDGKVWCVGPVSLCNKEDIDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDSS 293 (484)
Q Consensus 214 ~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~GS~~~~~ 293 (484)
..++.+-++.-..........+ |++..+|-....-... +.+++.+.+....++ +|+|++|+=-+
T Consensus 49 v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~~------------~~~~i~~~I~~~~pd-iv~vglG~PkQ-- 112 (171)
T cd06533 49 VFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGPE------------EEEEIIERINASGAD-ILFVGLGAPKQ-- 112 (171)
T ss_pred EEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCChh------------hHHHHHHHHHHcCCC-EEEEECCCCHH--
Confidence 3445555544444444555555 6677776322211100 123355666555544 99999996321
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEeCC
Q 011490 294 TRQLIELGLGLEATKKPFIWVIRPG 318 (484)
Q Consensus 294 ~~~~~~~~~al~~~~~~~i~~~~~~ 318 (484)
+.+ +.+-....+..++..+|+.
T Consensus 113 -E~~--~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 113 -ELW--IARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred -HHH--HHHHHHHCCCCEEEEecee
Confidence 211 2233334466777777663
No 455
>PHA02754 hypothetical protein; Provisional
Probab=23.97 E-value=1.1e+02 Score=20.82 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011490 426 KKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 461 (484)
Q Consensus 426 ~~~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~ 461 (484)
++++|.++| .+. .|++..+++++++.++
T Consensus 3 kAeEi~k~i----~eK----~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 3 KAEEIPKAI----MEK----DFKEAMRELKDILSEA 30 (67)
T ss_pred cHHHHHHHH----HHh----HHHHHHHHHHHHHhhC
Confidence 455666544 446 8888888999998865
No 456
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.84 E-value=4.6e+02 Score=27.83 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCCccccccccch------hhHHHHHHcCCCEecccc
Q 011490 356 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 386 (484)
Q Consensus 356 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 386 (484)
++.+ +++|.|- +.+++|...++|+|++--
T Consensus 74 ~~gv--~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G 108 (595)
T PRK09107 74 KPGV--VLVTSGPGATNAVTPLQDALMDSIPLVCITG 108 (595)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEEc
Confidence 3455 8888774 588899999999999853
No 457
>PLN00016 RNA-binding protein; Provisional
Probab=23.77 E-value=1e+02 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=25.1
Q ss_pred CcEEEEEc--CCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFP--FLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~--~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+++|+++. +|+.|.+ -..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 45777761 2344444 356789999999999998754
No 458
>PLN00061 photosystem II protein Psb27; Provisional
Probab=23.76 E-value=4.3e+02 Score=22.05 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHhhc
Q 011490 429 DVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEE--------GGSSYLNIKLLIKDILQQA 483 (484)
Q Consensus 429 ~l~~ai~~vl~-~~~~~~~~r~~a~~l~~~~~~~~~~--------gg~~~~~~~~~~~~~~~~~ 483 (484)
++.+.+++.++ +++....+++.+..-++.+++.+.+ |-+|+..++..++.+.+++
T Consensus 62 ~VV~tLresl~l~p~D~~~~~~aa~~Ake~IndYisryR~~~~V~gl~SfttMqtALnsLAghY 125 (150)
T PLN00061 62 EVVKTLRESLKEDPKDEAKFRRTADAAKESIREYLGNWRGQKTVAEEESYVELEKAIRSLASFY 125 (150)
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHhcCCccccccchHHHHHHHHHHHHHHH
Confidence 44444555444 3555556667677777777666543 4567777777777777664
No 459
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=23.61 E-value=94 Score=27.52 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCeEEE-ecCCC-cchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI-~D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+|| .|+.. .-|..-|.++|||+|.+.-+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 4788766 56643 568889999999999975543
No 460
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=23.60 E-value=1.6e+02 Score=26.83 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCe-EEEE
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGAL-VTIV 42 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~-V~~~ 42 (484)
=|+|.-.|..|--.....|.++|+++||. +..+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~i 36 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRI 36 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEE
Confidence 37888899999999999999999999985 4333
No 461
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.44 E-value=1.6e+02 Score=27.43 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=29.2
Q ss_pred CcEEEEEcCC--CCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 8 QLHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 8 ~~kil~~~~~--~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
..|++.++.+ +-|-..=.+.||..|++.|++|.++=
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5676666665 66778888999999999999999984
No 462
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.44 E-value=4.2e+02 Score=26.55 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=35.3
Q ss_pred HchHHHHHHHHhcCCCCeEEEecCCC----cchHHHHH---HcCCCcEEEecchHHHHH
Q 011490 104 MLRLPLETLFKEIQPKPSCLISDVCL----PWTVSSAC---KFNVPRIVFHGFSCFCLL 155 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~~~----~~a~~~A~---~lgIP~v~~~~~~~~~~~ 155 (484)
...+++.+.+++ .+.|+||..+.| -++..+++ +.|||+|.+.+.......
T Consensus 323 ~~g~eIa~~Lk~--dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~~ 379 (431)
T TIGR01917 323 QFAKEFSKELLA--AGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIALT 379 (431)
T ss_pred HHHHHHHHHHHH--cCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHHh
Confidence 455666666777 899999977643 35555554 469999999887766543
No 463
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=23.43 E-value=3.3e+02 Score=23.52 Aligned_cols=99 Identities=14% Similarity=0.010 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC-----CCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCCCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT-----PMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEG 82 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~-----~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 82 (484)
+-.|.+++..+.|-....+.+|-+-+-+|..|.++=- ...+..+-+.+ .++++...+ .+
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g---------~~ 66 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFG---------KG 66 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE-----------TT
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcC---------Cc
Confidence 4468889989999999877777666667778888732 11111111111 136665533 11
Q ss_pred CCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC
Q 011490 83 CESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCL 129 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (484)
+.... . ..-.. ....+......++.+.+ ..+|+||.|-..
T Consensus 67 f~~~~---~-~~~~~-~~~~~~~~~~a~~~i~~--~~~dlvILDEi~ 106 (172)
T PF02572_consen 67 FVWRM---N-EEEED-RAAAREGLEEAKEAISS--GEYDLVILDEIN 106 (172)
T ss_dssp ----G---G-GHHHH-HHHHHHHHHHHHHHTT---TT-SEEEEETHH
T ss_pred ccccC---C-CcHHH-HHHHHHHHHHHHHHHhC--CCCCEEEEcchH
Confidence 11110 0 11111 33333444555666666 799999999875
No 464
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.31 E-value=40 Score=31.69 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=32.9
Q ss_pred ccchhhHH--HHHHcCCCEeccccccchhhHHHH-HHHHhcce
Q 011490 365 HCGWNSVL--EAVSNGLPMVTWPFFADQFCNEKL-VVQVLRIG 404 (484)
Q Consensus 365 HgG~~s~~--eal~~GvP~l~~P~~~DQ~~na~~-~~e~~G~g 404 (484)
-||||+++ -|-.+||=++.+-+...|..++.. + ...|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~-~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI-AARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH-HHcCCC
Confidence 57888765 566779999999999999999987 6 588888
No 465
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=23.21 E-value=2.8e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 22 MIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 22 v~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
-.-++.||+.|.+.|+++. ++....+.+++.
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~ 40 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA 40 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc
Confidence 4567899999999999984 445455555554
No 466
>PRK10749 lysophospholipase L2; Provisional
Probab=23.17 E-value=1.5e+02 Score=28.62 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 10 kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
.++++.+|..+|...+..++..|.++|++|..+-.+
T Consensus 55 ~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~ 90 (330)
T PRK10749 55 RVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHR 90 (330)
T ss_pred cEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 467777888999999999999999999999766433
No 467
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.94 E-value=1.4e+02 Score=28.23 Aligned_cols=38 Identities=5% Similarity=-0.121 Sum_probs=28.2
Q ss_pred CcEEEEEcCC-CCCCHH---HHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFL-AQGHMI---PMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~-~~GHv~---P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+++|++++.+ +.=|-. -...+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4588888744 333443 6688999999999999998644
No 468
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=22.89 E-value=4.8e+02 Score=24.27 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=34.3
Q ss_pred CcEEEEEcC-CCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchh
Q 011490 8 QLHFILFPF-LAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (484)
Q Consensus 8 ~~kil~~~~-~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~ 49 (484)
++|-.|+-. ++-|-..-.-.||-.|++-+|.|.++++.+.+.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 456555543 478999999999999999999999999877654
No 469
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=22.81 E-value=6.5e+02 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=16.4
Q ss_pred HchHHHHHHHHhcCCCCeEEEec
Q 011490 104 MLRLPLETLFKEIQPKPSCLISD 126 (484)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D 126 (484)
.....+.+++++ .+||+||+-
T Consensus 108 ~~~~~L~~iIr~--~~PdvVvT~ 128 (283)
T TIGR03446 108 EAAEPLVRVIRE--FRPHVITTY 128 (283)
T ss_pred HHHHHHHHHHHH--cCCEEEEec
Confidence 345677888888 899999863
No 470
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=22.80 E-value=8.4e+02 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 18 AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
.-|-..=...|++.|+++|++|..+=+-
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4677888999999999999999988653
No 471
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.76 E-value=4.3e+02 Score=21.62 Aligned_cols=28 Identities=7% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHhcCCCCeEEEecC--CCcchHHHHHHcCC
Q 011490 112 LFKEIQPKPSCLISDV--CLPWTVSSACKFNV 141 (484)
Q Consensus 112 ~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgI 141 (484)
++++ .+||+||+-. .......+++.+|+
T Consensus 63 ~l~~--~~pdaii~~~~~~a~~~~~~l~~~g~ 92 (160)
T PF13377_consen 63 WLRR--LRPDAIICSNDRLALGVLRALRELGI 92 (160)
T ss_dssp HHHT--CSSSEEEESSHHHHHHHHHHHHHTTS
T ss_pred HHhc--CCCcEEEEcCHHHHHHHHHHHHHcCC
Confidence 4565 4899999866 33456677777776
No 472
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=22.65 E-value=1e+02 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhH
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~ 53 (484)
.+||++...++. -.+-...|.+.|+ +||+|.++.++...+.+..
T Consensus 19 ~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 19 KPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 568888877755 4555677999998 5999999998866555543
No 473
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=22.58 E-value=5.5e+02 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCeEEEecC---CCcchHHHHHHcCCCcEEEecch
Q 011490 108 PLETLFKEIQPKPSCLISDV---CLPWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~---~~~~a~~~A~~lgIP~v~~~~~~ 150 (484)
...+.+++ .++|+||+=. ....+-.+|..+++|++.+-|++
T Consensus 75 ~~~~~~~~--~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 75 RLVAIAEE--NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHh--cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 33455566 6899999555 23456677788899999986654
No 474
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.52 E-value=5.6e+02 Score=25.61 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCc
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~ 47 (484)
.+|++++.-+ .-.+.|++.|.+-|-+|..++++..
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3577776543 3457778888888998888876543
No 475
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=22.51 E-value=6.6e+02 Score=23.68 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCchhhhhhhHHHHHhcCCCeEeeCcCChhhhcCCCCccccccccchhhHHHHHHc
Q 011490 298 IELGLGLEATKKPFIWVIRPGDQAKGLEDWLLAEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN 377 (484)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~nv~~~~~~pq~~ll~~~~~~~~I~HgG~~s~~eal~~ 377 (484)
..+++.++..+..+++..+-..- +++.|.......-+-+ ||++ .=...|.+.+..|+.+
T Consensus 150 ~~~~~~l~~~~~Dlivlagym~i--------l~~~~l~~~~~~iINi-----------HpSL--LP~f~G~~p~~~ai~~ 208 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAKYMQI--------LSPDFVKRYPNKIINI-----------HHSF--LPAFIGANPYQRAYER 208 (280)
T ss_pred HHHHHHHHHhCCCEEEEeCchhh--------CCHHHHhhccCCEEEe-----------cCCc--CCCCCCcCHHHHHHHc
Confidence 45778888888899988887642 6666654433322222 5665 5556789999999999
Q ss_pred CCCEecccccc--chhhHHHHHHHHhcceeEeccCCCCCCcccccCCCccCHHHHHHHHHHHh
Q 011490 378 GLPMVTWPFFA--DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 438 (484)
Q Consensus 378 GvP~l~~P~~~--DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 438 (484)
|+....+-.+. +..+.+.-+. + --+.+... -|.++|.+.+.++-
T Consensus 209 G~k~tG~TvH~V~e~lD~GpII~-Q--~~v~I~~~--------------dt~~~L~~ri~~~E 254 (280)
T TIGR00655 209 GVKIIGATAHYVTEELDEGPIIE-Q--DVVRVDHT--------------DNVEDLIRAGRDIE 254 (280)
T ss_pred CCCeEEEEEEEEcCCCcCCCeEE-E--EEEEcCCC--------------CCHHHHHHHHHHHH
Confidence 99997776543 4444554442 2 23344333 58889988886643
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=22.51 E-value=2.1e+02 Score=26.12 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhh
Q 011490 17 LAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (484)
Q Consensus 17 ~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v 51 (484)
|+.|-..-.+.||.+|+++|-.|+++=..++....
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 48899999999999999999999999766665543
No 477
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.48 E-value=4.1e+02 Score=30.60 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCC--CCCHH----HHHHHHHHHHHCCCeEEEEeCCCchhhhhHHHhhcccCCCceEEEEeeCCCccCCCC
Q 011490 7 SQLHFILFPFLA--QGHMI----PMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLP 80 (484)
Q Consensus 7 ~~~kil~~~~~~--~GHv~----P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 80 (484)
.++||+++-.+. .|.-. -.+.++++|++.||+|.++... +
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~n----------------------------------p 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNN----------------------------------P 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCC----------------------------------c
Q ss_pred CCCCccCCCCccchHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCcchHHHHHHc---CCCcE
Q 011490 81 EGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPSCLISDVCLPWTVSSACKF---NVPRI 144 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~a~~~A~~l---gIP~v 144 (484)
+............++..+ ..+.+.++++. .++|.||...-...+..+|..+ |+|+.
T Consensus 600 etvs~~~~~aD~~y~ep~------~~e~vl~I~~~--e~~dgVI~~~g~~~~~~la~~le~~Gi~il 658 (1068)
T PRK12815 600 ETVSTDYDTADRLYFEPL------TLEDVLNVAEA--ENIKGVIVQFGGQTAINLAKGLEEAGLTIL 658 (1068)
T ss_pred cccccccccCceEEEccC------CHHHHHHHHhh--cCCCEEEEecCcHHHHHHHHHHHHCCCeEE
No 478
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.41 E-value=1.2e+02 Score=20.47 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Q 011490 428 EDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 481 (484)
Q Consensus 428 ~~l~~ai~~vl~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 481 (484)
.+|...+..+|. .+..+-..+.+.+-.-+++=|+.-+.+++-+.++..
T Consensus 2 ~elt~~v~~lL~------qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 2 QELTAFVQNLLQ------QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578888888886 788888888888777767766555666665555543
No 479
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=22.36 E-value=1e+02 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC-------cchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDVCL-------PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~-------~~a~~~A~~lgIP~v~~ 146 (484)
+.+.++++++..++|++++|..- -.|..++-.+++|+|-+
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 45566666666789999999842 23556777788999864
No 480
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.35 E-value=1.4e+02 Score=29.69 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=30.7
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPF--LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~--~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+++|+.++. |+-|-..-.+.||..|+++|+.|.++=..
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 556665544 48899999999999999999999998443
No 481
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.30 E-value=1.6e+02 Score=27.36 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCeEEEecC-----CC-cchHHHHHHcCCCcEEE
Q 011490 106 RLPLETLFKEIQPKPSCLISDV-----CL-PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~-----~~-~~a~~~A~~lgIP~v~~ 146 (484)
...+.+.++. .++|+||+.- .+ --+..+|+.||+|++++
T Consensus 100 a~~Laa~~~~--~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 100 AKALAAAVKK--IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred HHHHHHHHHh--cCCCEEEEecccccCCccchHHHHHHHhCCceeee
Confidence 4456777888 8999999533 22 34778999999999985
No 482
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.15 E-value=1.1e+02 Score=27.61 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCeEEEecCCC--cchHHHHHHcCCCcEEEecch
Q 011490 110 ETLFKEIQPKPSCLISDVCL--PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 110 ~~~l~~~~~~~D~vI~D~~~--~~a~~~A~~lgIP~v~~~~~~ 150 (484)
+.+++ .+||+||..... .....-....+||++.+....
T Consensus 54 E~i~~---l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILA---LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHH---T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHh---CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 55554 499999988876 455666777899999975544
No 483
>PHA02857 monoglyceride lipase; Provisional
Probab=22.08 E-value=1.4e+02 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 8 ~~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
+..++++.+|..+|..-+..+++.|.++|+.|..+-.+
T Consensus 24 ~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~ 61 (276)
T PHA02857 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHI 61 (276)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCC
Confidence 44688888898899999999999999999998876444
No 484
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=22.04 E-value=3.3e+02 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Q 011490 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (484)
Q Consensus 11 il~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~ 44 (484)
+++++ ++.|++ -..+++.|+++|++|+.+..
T Consensus 2 ~~lIt-G~sg~i--G~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVT-GGMGGI--GTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEE-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 44554 456666 56779999999999988765
No 485
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=22.00 E-value=1.3e+02 Score=27.40 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCeEEEecC--CCcchHHHHHH----cCCCcEEEecch
Q 011490 107 LPLETLFKEIQPKPSCLISDV--CLPWTVSSACK----FNVPRIVFHGFS 150 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~----lgIP~v~~~~~~ 150 (484)
+...+.+++ ++||++|+-+ ....+...|+. .|||+|+++-.+
T Consensus 49 ~~~~~~~~~--~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKE--WDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHH--H--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHh--hCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 344556667 8999887555 22344444443 599999975543
No 486
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=21.93 E-value=1.7e+02 Score=28.98 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=46.6
Q ss_pred ccccccccchhhHHHHHHc------------C-----CCEeccccccchhhHHHHHHHHhcceeEeccCCCCCCcccccC
Q 011490 359 IGGFLTHCGWNSVLEAVSN------------G-----LPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERN 421 (484)
Q Consensus 359 ~~~~I~HgG~~s~~eal~~------------G-----vP~l~~P~~~DQ~~na~~~~e~~G~g~~l~~~~~~~~~~~~~~ 421 (484)
..+++|.||..+.+-|+.+ | .|.+.++-.+ |+-+.+-+ ..+|+|++.-+-+ .
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~---------~ 172 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTD---------E 172 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BB---------T
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCC---------c
Confidence 5579999998888777532 3 4566664433 56666666 6899995553221 1
Q ss_pred CCccCHHHHHHHHHHHhcC
Q 011490 422 GVPVKKEDVKKAINMLMDE 440 (484)
Q Consensus 422 ~~~~~~~~l~~ai~~vl~~ 440 (484)
+++++.++|.++|.+..++
T Consensus 173 ~~~md~~~L~~~l~~~~~~ 191 (373)
T PF00282_consen 173 DGRMDIEALEKALEKDIAN 191 (373)
T ss_dssp TSSB-HHHHHHHHHHHHHT
T ss_pred chhhhHHHhhhhhcccccc
Confidence 3579999999999887654
No 487
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.90 E-value=1.6e+02 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCCCeEEEecCCC------cchHHHHHHcCCCcEE
Q 011490 106 RLPLETLFKEIQPKPSCLISDVCL------PWTVSSACKFNVPRIV 145 (484)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~~~------~~a~~~A~~lgIP~v~ 145 (484)
...+.+++++ .+||+|+.-..+ ..+..+|.++|.|+++
T Consensus 97 a~al~~~i~~--~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 97 AKALAAAIKK--IGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHH--hCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 3455666776 679999977644 5688999999999887
No 488
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.88 E-value=1.8e+02 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~ 43 (484)
.+|++++. ...+..-.+.+++.|++.|..|.+-.
T Consensus 2 ~~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 2 VQVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred eEEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 35666665 46678889999999999999998854
No 489
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.87 E-value=1.4e+02 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
.+|+++-.|.- ....++.|.+.||+|+++++.
T Consensus 14 ~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 47777765433 377899999999999999644
No 490
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.73 E-value=89 Score=29.34 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCeEEEEeCC
Q 011490 27 DIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 27 ~La~~L~~rGh~V~~~~~~ 45 (484)
.+|..|++.||+|++++..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999865
No 491
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=21.71 E-value=1.2e+02 Score=30.14 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCchhhhhHH
Q 011490 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (484)
Q Consensus 9 ~kil~~~~~~~GHv~P~l~La~~L~~rGh~V~~~~~~~~~~~v~~~ 54 (484)
++|++...++- -.+..+.|++.|.++|++|.++-++...+.+...
T Consensus 5 k~ill~v~gsi-aayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 5 KRILLGVTGSI-AAYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred ceEEEEecCch-hhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 48888887766 4567799999999999999999988655544443
No 492
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.70 E-value=1.4e+02 Score=27.62 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEE--ecCCC----cchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLI--SDVCL----PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI--~D~~~----~~a~~~A~~lgIP~v~~ 146 (484)
+.+.+++++ .++++|| +.++. --+..+|+.+|||++.|
T Consensus 55 ~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 55 EGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 456777788 8999988 33332 23567899999999996
No 493
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.69 E-value=3.1e+02 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.8
Q ss_pred cccccchhhHHHHH----HcCCCEecccc
Q 011490 362 FLTHCGWNSVLEAV----SNGLPMVTWPF 386 (484)
Q Consensus 362 ~I~HgG~~s~~eal----~~GvP~l~~P~ 386 (484)
+|.-||=||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999886 34799999996
No 494
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.65 E-value=6.1e+02 Score=23.02 Aligned_cols=29 Identities=17% Similarity=-0.002 Sum_probs=18.9
Q ss_pred CCCeEEEecCCC----cchHHHHHHcCCCcEEE
Q 011490 118 PKPSCLISDVCL----PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 118 ~~~D~vI~D~~~----~~a~~~A~~lgIP~v~~ 146 (484)
.++|.+|..... ......+...|||+|.+
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 488988776532 12334556789999975
No 495
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.65 E-value=1.2e+02 Score=29.67 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Q 011490 18 AQGHMIPMIDIARLLAQ-HGALVTIVTTP 45 (484)
Q Consensus 18 ~~GHv~P~l~La~~L~~-rGh~V~~~~~~ 45 (484)
=+|++--+..||+.|++ +||+|.+-+..
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 48999999999999997 69999999865
No 496
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.64 E-value=1.1e+02 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCeEEE-ecCCC-cchHHHHHHcCCCcEEEecch
Q 011490 118 PKPSCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (484)
Q Consensus 118 ~~~D~vI-~D~~~-~~a~~~A~~lgIP~v~~~~~~ 150 (484)
..||+|| .|+.. .-|..-|.++|||+|.+.-+.
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 4789776 56543 467889999999999986553
No 497
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=21.49 E-value=2e+02 Score=25.95 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=31.1
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHHCCCeEEEEeCC
Q 011490 9 LHFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (484)
Q Consensus 9 ~kil~~~~~-~~GHv~P~l~La~~L~~rGh~V~~~~~~ 45 (484)
.-|++++=+ ..+...+.....+.|+++|+.|.|+++.
T Consensus 151 t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 151 TTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 457777776 6788999999999999999999999876
No 498
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=21.45 E-value=1.2e+02 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=20.8
Q ss_pred CCCeEEEecC--CCcchHHHHHHcCCCcEE
Q 011490 118 PKPSCLISDV--CLPWTVSSACKFNVPRIV 145 (484)
Q Consensus 118 ~~~D~vI~D~--~~~~a~~~A~~lgIP~v~ 145 (484)
.+.--||++. ...-+..+|+.+|||+++
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~iv 58 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIV 58 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEE
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEE
Confidence 4666777666 345688999999999998
No 499
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.35 E-value=1.4e+02 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCeEEEecC--CCcchHHHHHHcCCCcEEE
Q 011490 107 LPLETLFKEIQPKPSCLISDV--CLPWTVSSACKFNVPRIVF 146 (484)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~--~~~~a~~~A~~lgIP~v~~ 146 (484)
..+.+.+.+ .++|+|++-. -.+.|..+|..+|+|++..
T Consensus 101 ~~la~~~~~--~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 101 PVVAERFMG--LRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHHccC--CCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 344444444 6899998544 3467888999999999874
No 500
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.35 E-value=1.2e+02 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCeEEE-ecC-CC----cchHHHHHHcCCCcEEE
Q 011490 106 RLPLETLFKEIQPKPSCLI-SDV-CL----PWTVSSACKFNVPRIVF 146 (484)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI-~D~-~~----~~a~~~A~~lgIP~v~~ 146 (484)
.+.+.+++++ .+.|+|| +.+ +. -=+..+|+..|||++.|
T Consensus 55 ~e~l~~~l~e--~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLRE--EGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHH--cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3566888888 8999999 333 22 12567899999999985
Done!