Query 011491
Match_columns 484
No_of_seqs 349 out of 2237
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 01:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00100 ilvH acetohydroxyacid 100.0 7.6E-54 1.7E-58 401.0 16.8 170 313-482 1-170 (174)
2 PRK11895 ilvH acetolactate syn 100.0 3.2E-53 6.9E-58 392.5 20.2 159 313-471 1-159 (161)
3 TIGR00119 acolac_sm acetolacta 100.0 1.2E-52 2.6E-57 387.3 19.3 157 314-470 1-157 (157)
4 COG0440 IlvH Acetolactate synt 100.0 1.5E-52 3.2E-57 387.5 16.5 160 312-471 2-161 (163)
5 PRK11895 ilvH acetolactate syn 100.0 1E-51 2.2E-56 382.5 20.7 157 78-234 1-159 (161)
6 TIGR00119 acolac_sm acetolacta 100.0 3.4E-51 7.3E-56 377.6 19.9 155 79-233 1-157 (157)
7 CHL00100 ilvH acetohydroxyacid 100.0 2E-51 4.3E-56 384.8 17.6 167 78-244 1-169 (174)
8 COG0440 IlvH Acetolactate synt 100.0 4.1E-51 8.9E-56 377.9 16.7 159 77-235 2-162 (163)
9 KOG2663 Acetolactate synthase, 100.0 2E-51 4.2E-56 400.4 3.1 236 74-364 72-309 (309)
10 KOG2663 Acetolactate synthase, 100.0 4.3E-35 9.2E-40 286.3 6.0 163 310-472 73-284 (309)
11 PRK08178 acetolactate synthase 100.0 1E-31 2.2E-36 230.4 11.4 90 309-399 3-92 (96)
12 PRK13562 acetolactate synthase 100.0 1.5E-31 3.4E-36 224.4 10.1 80 313-392 1-83 (84)
13 PRK06737 acetolactate synthase 100.0 4.2E-30 9.2E-35 212.3 10.5 76 313-388 1-76 (76)
14 PRK08178 acetolactate synthase 100.0 4.2E-29 9.1E-34 214.3 10.4 85 77-162 6-92 (96)
15 PRK13562 acetolactate synthase 100.0 5.4E-29 1.2E-33 209.1 9.6 78 78-155 1-83 (84)
16 PRK11152 ilvM acetolactate syn 100.0 4E-28 8.8E-33 200.4 10.2 75 312-387 1-75 (76)
17 PRK06737 acetolactate synthase 99.9 1.2E-27 2.6E-32 197.7 9.9 74 78-151 1-76 (76)
18 PRK11152 ilvM acetolactate syn 99.9 6.5E-26 1.4E-30 187.3 9.8 73 77-150 1-75 (76)
19 PF10369 ALS_ss_C: Small subun 99.9 1.8E-25 4E-30 183.4 7.4 75 158-232 1-75 (75)
20 PF10369 ALS_ss_C: Small subun 99.9 2.8E-25 6.1E-30 182.3 6.9 75 395-469 1-75 (75)
21 PF13710 ACT_5: ACT domain; PD 99.9 8.2E-23 1.8E-27 162.4 8.5 63 323-385 1-63 (63)
22 PF13710 ACT_5: ACT domain; PD 99.8 9.1E-21 2E-25 150.7 8.1 61 88-148 1-63 (63)
23 COG3978 Acetolactate synthase 99.1 3.5E-10 7.6E-15 94.9 7.7 77 312-389 1-77 (86)
24 COG3978 Acetolactate synthase 98.9 4.5E-09 9.7E-14 88.3 7.4 75 77-152 1-77 (86)
25 PF01842 ACT: ACT domain; Int 98.8 1.6E-08 3.5E-13 77.4 8.0 66 315-381 1-66 (66)
26 cd04878 ACT_AHAS N-terminal AC 98.8 4E-08 8.7E-13 75.2 9.7 71 315-385 1-71 (72)
27 PF01842 ACT: ACT domain; Int 98.8 4.4E-08 9.6E-13 74.9 8.3 65 80-144 1-66 (66)
28 PF13291 ACT_4: ACT domain; PD 98.7 2.7E-07 5.9E-12 74.8 10.9 75 312-386 4-79 (80)
29 cd04879 ACT_3PGDH-like ACT_3PG 98.6 1.8E-07 4E-12 71.2 7.7 71 316-388 1-71 (71)
30 cd04878 ACT_AHAS N-terminal AC 98.6 3.9E-07 8.5E-12 69.7 9.3 69 80-148 1-71 (72)
31 PRK06349 homoserine dehydrogen 98.6 1.5E-07 3.2E-12 99.3 8.7 73 312-385 346-419 (426)
32 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 3.7E-07 8.1E-12 71.1 7.8 71 315-385 1-72 (79)
33 cd04903 ACT_LSD C-terminal ACT 98.5 5.4E-07 1.2E-11 69.0 7.6 71 316-388 1-71 (71)
34 cd04908 ACT_Bt0572_1 N-termina 98.4 1.1E-06 2.3E-11 69.3 8.5 46 80-125 2-47 (66)
35 cd04908 ACT_Bt0572_1 N-termina 98.4 1.2E-06 2.6E-11 69.0 8.3 45 315-359 2-46 (66)
36 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1E-06 2.2E-11 67.0 7.2 68 82-151 2-71 (71)
37 PRK06349 homoserine dehydrogen 98.4 7.5E-07 1.6E-11 94.0 8.6 75 74-148 343-419 (426)
38 PF13291 ACT_4: ACT domain; PD 98.4 3E-06 6.4E-11 68.8 10.2 72 78-149 5-79 (80)
39 PRK08577 hypothetical protein; 98.4 3.3E-06 7.1E-11 76.1 10.8 76 313-388 55-132 (136)
40 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.3 3E-06 6.5E-11 65.9 7.7 70 80-149 1-73 (79)
41 cd04888 ACT_PheB-BS C-terminal 98.3 6.7E-06 1.4E-10 65.1 9.7 72 316-388 2-75 (76)
42 cd04874 ACT_Af1403 N-terminal 98.3 6.5E-06 1.4E-10 63.3 9.1 70 316-387 2-71 (72)
43 cd04903 ACT_LSD C-terminal ACT 98.3 3.5E-06 7.5E-11 64.5 7.3 69 81-151 1-71 (71)
44 cd04901 ACT_3PGDH C-terminal A 98.2 1.7E-06 3.6E-11 67.4 5.2 68 82-151 2-69 (69)
45 cd04901 ACT_3PGDH C-terminal A 98.2 2.3E-06 5E-11 66.6 5.7 68 317-388 2-69 (69)
46 PRK08577 hypothetical protein; 98.2 1.3E-05 2.8E-10 72.2 10.3 75 77-151 54-132 (136)
47 cd04902 ACT_3PGDH-xct C-termin 98.2 5.4E-06 1.2E-10 64.9 6.7 71 317-389 2-72 (73)
48 PRK11589 gcvR glycine cleavage 98.2 6.8E-05 1.5E-09 72.1 15.2 65 76-140 5-69 (190)
49 cd04877 ACT_TyrR N-terminal AC 98.1 1.8E-05 3.8E-10 63.8 9.3 70 316-389 2-71 (74)
50 cd04887 ACT_MalLac-Enz ACT_Mal 98.1 1.7E-05 3.7E-10 62.8 9.0 68 316-384 1-69 (74)
51 cd04874 ACT_Af1403 N-terminal 98.1 2.1E-05 4.6E-10 60.4 8.9 69 81-150 2-71 (72)
52 cd04888 ACT_PheB-BS C-terminal 98.1 1.9E-05 4.1E-10 62.6 8.7 71 81-151 2-75 (76)
53 cd04876 ACT_RelA-SpoT ACT dom 98.1 3.5E-05 7.6E-10 56.6 9.3 69 317-386 1-70 (71)
54 PRK00194 hypothetical protein; 98.1 6.5E-06 1.4E-10 68.3 5.5 73 312-386 1-75 (90)
55 PRK00194 hypothetical protein; 98.0 8.6E-06 1.9E-10 67.6 5.6 73 77-149 1-75 (90)
56 cd04902 ACT_3PGDH-xct C-termin 98.0 1.9E-05 4E-10 61.8 6.9 69 82-152 2-72 (73)
57 cd04883 ACT_AcuB C-terminal AC 98.0 2.9E-05 6.2E-10 61.0 7.9 62 316-379 3-64 (72)
58 cd04889 ACT_PDH-BS-like C-term 98.0 1.6E-05 3.5E-10 60.3 6.3 46 82-127 1-47 (56)
59 PRK04435 hypothetical protein; 98.0 7.1E-05 1.5E-09 68.9 11.1 78 311-389 66-145 (147)
60 PRK04435 hypothetical protein; 98.0 5.2E-05 1.1E-09 69.8 10.0 74 79-152 69-145 (147)
61 cd04877 ACT_TyrR N-terminal AC 97.9 6.3E-05 1.4E-09 60.6 8.8 70 81-152 2-71 (74)
62 cd04889 ACT_PDH-BS-like C-term 97.9 3.2E-05 7E-10 58.6 6.3 46 317-363 1-46 (56)
63 cd02116 ACT ACT domains are co 97.9 6.4E-05 1.4E-09 52.3 7.4 59 317-376 1-59 (60)
64 cd04880 ACT_AAAH-PDT-like ACT 97.9 8.7E-05 1.9E-09 59.6 8.8 66 317-382 2-70 (75)
65 cd04886 ACT_ThrD-II-like C-ter 97.9 5.7E-05 1.2E-09 57.8 7.4 63 317-379 1-67 (73)
66 COG4747 ACT domain-containing 97.9 4.3E-05 9.3E-10 69.3 7.4 122 77-219 1-132 (142)
67 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 9.5E-05 2.1E-09 58.5 8.6 66 81-147 1-69 (74)
68 cd04869 ACT_GcvR_2 ACT domains 97.8 5.9E-05 1.3E-09 60.8 7.1 63 317-379 2-69 (81)
69 cd04876 ACT_RelA-SpoT ACT dom 97.8 0.00014 3E-09 53.4 8.5 68 82-149 1-70 (71)
70 PRK07431 aspartate kinase; Pro 97.8 0.0057 1.2E-07 67.2 24.4 287 85-451 277-577 (587)
71 cd04909 ACT_PDH-BS C-terminal 97.8 8.6E-05 1.9E-09 58.2 7.6 63 315-378 2-64 (69)
72 cd04905 ACT_CM-PDT C-terminal 97.8 0.00018 3.8E-09 58.7 9.5 67 315-381 2-71 (80)
73 cd04909 ACT_PDH-BS C-terminal 97.8 0.00011 2.4E-09 57.6 7.6 61 80-141 2-64 (69)
74 cd04905 ACT_CM-PDT C-terminal 97.8 0.00019 4E-09 58.6 9.1 65 80-144 2-71 (80)
75 cd04884 ACT_CBS C-terminal ACT 97.8 0.00015 3.2E-09 57.8 8.3 66 317-382 2-69 (72)
76 cd04872 ACT_1ZPV ACT domain pr 97.7 5.1E-05 1.1E-09 63.1 5.2 70 314-385 1-72 (88)
77 cd04872 ACT_1ZPV ACT domain pr 97.7 6.1E-05 1.3E-09 62.6 5.4 69 79-149 1-73 (88)
78 cd04880 ACT_AAAH-PDT-like ACT 97.7 0.00024 5.1E-09 57.1 8.6 64 82-145 2-70 (75)
79 cd04882 ACT_Bt0572_2 C-termina 97.7 0.00015 3.3E-09 55.4 6.9 48 317-364 2-49 (65)
80 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00015 3.2E-09 58.5 7.1 61 82-142 2-69 (81)
81 cd04883 ACT_AcuB C-terminal AC 97.6 0.00022 4.7E-09 56.0 7.3 59 81-141 3-63 (72)
82 cd04884 ACT_CBS C-terminal ACT 97.6 0.00036 7.8E-09 55.6 8.0 63 82-145 2-69 (72)
83 cd04886 ACT_ThrD-II-like C-ter 97.6 0.00033 7.1E-09 53.6 7.2 61 82-142 1-67 (73)
84 PRK11092 bifunctional (p)ppGpp 97.5 0.00056 1.2E-08 77.1 11.3 90 294-388 610-700 (702)
85 PF13740 ACT_6: ACT domain; PD 97.5 0.00058 1.3E-08 55.7 8.2 64 79-142 2-65 (76)
86 cd04875 ACT_F4HF-DF N-terminal 97.5 0.00029 6.4E-09 56.5 6.4 64 316-379 1-66 (74)
87 cd02116 ACT ACT domains are co 97.5 0.00064 1.4E-08 47.1 7.0 57 82-139 1-59 (60)
88 cd04875 ACT_F4HF-DF N-terminal 97.4 0.00039 8.5E-09 55.8 6.5 62 81-142 1-66 (74)
89 cd04900 ACT_UUR-like_1 ACT dom 97.4 0.00095 2E-08 53.7 8.6 64 315-378 2-71 (73)
90 cd04882 ACT_Bt0572_2 C-termina 97.4 0.00056 1.2E-08 52.3 6.8 46 82-127 2-49 (65)
91 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.00096 2.1E-08 51.4 8.2 49 81-129 2-50 (70)
92 cd04870 ACT_PSP_1 CT domains f 97.4 0.00045 9.7E-09 55.9 6.2 63 82-144 2-65 (75)
93 cd04870 ACT_PSP_1 CT domains f 97.4 0.00042 9.2E-09 56.0 6.0 62 317-380 2-64 (75)
94 COG4492 PheB ACT domain-contai 97.4 0.0009 2E-08 61.8 8.5 75 313-388 71-147 (150)
95 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0015 3.2E-08 50.3 8.5 49 316-366 2-50 (70)
96 PRK10872 relA (p)ppGpp synthet 97.3 0.0012 2.5E-08 75.1 11.0 91 294-388 650-741 (743)
97 TIGR00691 spoT_relA (p)ppGpp s 97.3 0.0014 2.9E-08 73.8 11.1 88 294-386 594-682 (683)
98 cd04899 ACT_ACR-UUR-like_2 C-t 97.3 0.0017 3.8E-08 50.6 8.4 61 81-141 2-68 (70)
99 PRK05092 PII uridylyl-transfer 97.3 0.014 3.1E-07 67.7 19.1 66 315-381 844-915 (931)
100 COG4492 PheB ACT domain-contai 97.2 0.0015 3.3E-08 60.3 8.7 76 77-152 70-148 (150)
101 PF13740 ACT_6: ACT domain; PD 97.2 0.0024 5.1E-08 52.1 9.0 64 314-379 2-65 (76)
102 cd04925 ACT_ACR_2 ACT domain-c 97.2 0.0017 3.6E-08 52.8 7.9 62 316-379 2-71 (74)
103 cd04925 ACT_ACR_2 ACT domain-c 97.2 0.0018 4E-08 52.5 7.6 62 81-142 2-71 (74)
104 cd04926 ACT_ACR_4 C-terminal 97.2 0.0024 5.1E-08 51.6 8.2 45 81-125 3-47 (72)
105 cd04927 ACT_ACR-like_2 Second 97.2 0.0022 4.8E-08 52.6 8.2 63 316-378 2-69 (76)
106 cd04900 ACT_UUR-like_1 ACT dom 97.2 0.0031 6.7E-08 50.8 8.7 61 81-141 3-71 (73)
107 cd04899 ACT_ACR-UUR-like_2 C-t 97.1 0.0044 9.5E-08 48.3 8.8 62 316-379 2-69 (70)
108 cd04926 ACT_ACR_4 C-terminal 97.0 0.004 8.8E-08 50.2 8.3 46 316-363 3-48 (72)
109 cd04904 ACT_AAAH ACT domain of 97.0 0.0055 1.2E-07 49.9 9.0 68 316-383 2-70 (74)
110 cd04893 ACT_GcvR_1 ACT domains 97.0 0.0025 5.5E-08 52.1 6.8 63 80-142 2-64 (77)
111 cd04930 ACT_TH ACT domain of t 97.0 0.0062 1.3E-07 54.4 9.6 72 314-385 41-113 (115)
112 TIGR01693 UTase_glnD [Protein- 96.9 0.031 6.8E-07 64.2 17.6 65 314-378 779-847 (850)
113 cd04904 ACT_AAAH ACT domain of 96.9 0.0056 1.2E-07 49.8 8.5 67 81-147 2-71 (74)
114 cd04927 ACT_ACR-like_2 Second 96.9 0.0043 9.3E-08 50.9 7.6 61 81-141 2-69 (76)
115 cd04928 ACT_TyrKc Uncharacteri 96.9 0.0065 1.4E-07 49.9 8.2 43 315-357 2-44 (68)
116 COG4747 ACT domain-containing 96.8 0.0024 5.2E-08 58.2 6.0 123 312-456 1-132 (142)
117 PRK03381 PII uridylyl-transfer 96.8 0.038 8.1E-07 63.2 16.8 37 314-350 707-743 (774)
118 COG1707 ACT domain-containing 96.8 0.0048 1E-07 59.3 8.1 83 314-397 2-84 (218)
119 PRK13011 formyltetrahydrofolat 96.7 0.0056 1.2E-07 62.2 8.1 71 309-379 2-73 (286)
120 PRK13011 formyltetrahydrofolat 96.7 0.0048 1E-07 62.8 7.6 70 75-144 3-75 (286)
121 COG0317 SpoT Guanosine polypho 96.7 0.011 2.3E-07 67.0 10.7 88 295-387 612-700 (701)
122 cd04931 ACT_PAH ACT domain of 96.7 0.011 2.3E-07 50.7 8.4 68 313-380 13-82 (90)
123 cd04893 ACT_GcvR_1 ACT domains 96.7 0.0064 1.4E-07 49.8 6.8 62 315-378 2-63 (77)
124 PRK05007 PII uridylyl-transfer 96.6 0.066 1.4E-06 62.2 17.0 66 314-380 808-878 (884)
125 PRK11790 D-3-phosphoglycerate 96.6 0.0039 8.5E-08 66.1 6.4 72 78-151 337-408 (409)
126 cd04895 ACT_ACR_1 ACT domain-c 96.5 0.015 3.2E-07 48.2 8.2 62 315-377 2-69 (72)
127 cd04930 ACT_TH ACT domain of t 96.5 0.017 3.6E-07 51.6 9.2 71 78-148 40-113 (115)
128 PRK06027 purU formyltetrahydro 96.5 0.006 1.3E-07 62.0 7.1 69 76-144 3-75 (286)
129 cd04895 ACT_ACR_1 ACT domain-c 96.5 0.015 3.2E-07 48.2 8.1 61 80-140 2-69 (72)
130 PRK00275 glnD PII uridylyl-tra 96.5 0.085 1.8E-06 61.3 17.1 65 315-380 815-885 (895)
131 PRK03059 PII uridylyl-transfer 96.5 0.048 1E-06 63.1 15.1 66 315-382 787-856 (856)
132 cd04928 ACT_TyrKc Uncharacteri 96.5 0.016 3.4E-07 47.6 8.1 47 80-126 2-49 (68)
133 cd04931 ACT_PAH ACT domain of 96.3 0.021 4.5E-07 49.0 7.9 64 78-141 13-80 (90)
134 PRK11790 D-3-phosphoglycerate 96.3 0.0082 1.8E-07 63.7 6.6 72 313-388 337-408 (409)
135 cd04896 ACT_ACR-like_3 ACT dom 96.2 0.02 4.3E-07 47.9 7.3 63 316-378 2-70 (75)
136 PRK11092 bifunctional (p)ppGpp 96.2 0.022 4.8E-07 64.6 9.8 72 79-151 626-700 (702)
137 PRK06027 purU formyltetrahydro 96.2 0.011 2.4E-07 60.1 6.7 70 311-380 3-74 (286)
138 PRK13581 D-3-phosphoglycerate 96.2 0.01 2.3E-07 64.7 6.8 74 78-151 451-524 (526)
139 COG1707 ACT domain-containing 96.1 0.022 4.7E-07 54.9 7.6 80 79-159 2-83 (218)
140 cd04885 ACT_ThrD-I Tandem C-te 96.0 0.028 6E-07 44.7 7.1 60 317-378 1-61 (68)
141 PRK07334 threonine dehydratase 96.0 0.029 6.3E-07 59.0 9.2 66 314-379 326-395 (403)
142 PRK07431 aspartate kinase; Pro 96.0 0.3 6.5E-06 53.9 17.3 51 322-380 530-580 (587)
143 cd04929 ACT_TPH ACT domain of 96.0 0.042 9.2E-07 45.3 8.1 62 317-378 3-65 (74)
144 PRK11589 gcvR glycine cleavage 96.0 0.038 8.2E-07 53.4 8.9 115 312-430 5-129 (190)
145 TIGR01127 ilvA_1Cterm threonin 96.0 0.031 6.8E-07 58.0 9.0 67 313-379 304-374 (380)
146 cd04896 ACT_ACR-like_3 ACT dom 95.9 0.03 6.5E-07 46.8 7.0 61 81-141 2-70 (75)
147 TIGR00719 sda_beta L-serine de 95.9 0.021 4.5E-07 55.4 6.9 57 315-371 149-207 (208)
148 TIGR00691 spoT_relA (p)ppGpp s 95.9 0.036 7.8E-07 62.7 9.5 70 79-149 610-682 (683)
149 PRK10872 relA (p)ppGpp synthet 95.8 0.036 7.7E-07 63.3 9.4 72 80-151 667-741 (743)
150 cd04929 ACT_TPH ACT domain of 95.8 0.05 1.1E-06 44.9 7.8 61 81-141 2-65 (74)
151 cd04897 ACT_ACR_3 ACT domain-c 95.8 0.04 8.7E-07 46.0 7.1 62 81-142 3-71 (75)
152 PRK11899 prephenate dehydratas 95.7 0.073 1.6E-06 54.2 10.1 69 314-382 194-265 (279)
153 TIGR00719 sda_beta L-serine de 95.6 0.028 6E-07 54.5 6.5 56 79-134 148-207 (208)
154 COG2716 GcvR Glycine cleavage 95.6 0.017 3.8E-07 55.3 4.9 71 78-149 91-169 (176)
155 PRK13581 D-3-phosphoglycerate 95.6 0.028 6E-07 61.5 7.0 73 314-388 452-524 (526)
156 cd04897 ACT_ACR_3 ACT domain-c 95.5 0.061 1.3E-06 44.9 7.3 63 316-379 3-71 (75)
157 PRK04374 PII uridylyl-transfer 95.5 0.36 7.7E-06 56.3 15.9 65 315-380 797-866 (869)
158 COG2150 Predicted regulator of 95.4 0.042 9.2E-07 52.3 6.8 70 315-386 94-165 (167)
159 COG2716 GcvR Glycine cleavage 95.3 0.017 3.6E-07 55.4 3.7 72 314-385 92-168 (176)
160 PRK07334 threonine dehydratase 95.3 0.072 1.6E-06 56.1 8.7 64 79-142 326-395 (403)
161 PRK13010 purU formyltetrahydro 95.3 0.23 5E-06 50.8 12.1 40 74-113 4-43 (289)
162 TIGR01327 PGDH D-3-phosphoglyc 95.3 0.029 6.2E-07 61.3 5.9 73 79-151 451-523 (525)
163 PRK06382 threonine dehydratase 95.2 0.065 1.4E-06 56.5 8.3 65 314-379 330-399 (406)
164 TIGR00655 PurU formyltetrahydr 95.2 0.049 1.1E-06 55.4 7.0 62 80-141 1-66 (280)
165 PRK11899 prephenate dehydratas 95.1 0.11 2.5E-06 52.8 9.3 69 78-146 193-266 (279)
166 PRK06635 aspartate kinase; Rev 95.1 0.13 2.8E-06 53.8 10.0 120 86-214 270-398 (404)
167 PRK08198 threonine dehydratase 95.1 0.11 2.4E-06 54.5 9.3 69 311-379 324-396 (404)
168 TIGR01127 ilvA_1Cterm threonin 95.0 0.1 2.2E-06 54.3 8.8 65 78-142 304-374 (380)
169 cd04935 ACT_AKiii-DAPDC_1 ACT 95.0 0.088 1.9E-06 43.3 6.6 56 321-382 11-71 (75)
170 COG0317 SpoT Guanosine polypho 94.7 0.15 3.3E-06 58.0 9.7 72 77-150 625-700 (701)
171 cd04913 ACT_AKii-LysC-BS-like_ 94.7 0.079 1.7E-06 40.8 5.4 55 321-378 9-63 (75)
172 PRK06382 threonine dehydratase 94.7 0.12 2.6E-06 54.6 8.4 65 78-142 329-399 (406)
173 cd04885 ACT_ThrD-I Tandem C-te 94.7 0.16 3.4E-06 40.4 7.1 59 82-141 1-61 (68)
174 cd04906 ACT_ThrD-I_1 First of 94.5 0.19 4.2E-06 41.8 7.6 76 315-395 2-79 (85)
175 PRK13010 purU formyltetrahydro 94.4 0.099 2.1E-06 53.5 6.8 72 310-381 5-82 (289)
176 TIGR01327 PGDH D-3-phosphoglyc 94.4 0.075 1.6E-06 58.1 6.3 72 315-388 452-523 (525)
177 PRK06545 prephenate dehydrogen 94.4 0.11 2.4E-06 53.8 7.3 65 314-381 290-356 (359)
178 COG2061 ACT-domain-containing 94.3 0.97 2.1E-05 43.1 12.5 138 312-452 3-153 (170)
179 PRK06545 prephenate dehydrogen 94.3 0.13 2.8E-06 53.3 7.5 65 79-144 290-356 (359)
180 cd04913 ACT_AKii-LysC-BS-like_ 94.3 0.13 2.9E-06 39.5 5.8 54 86-141 9-63 (75)
181 cd04912 ACT_AKiii-LysC-EC-like 94.2 0.19 4.2E-06 40.7 6.9 52 321-378 11-67 (75)
182 TIGR00655 PurU formyltetrahydr 94.2 0.11 2.5E-06 52.8 6.8 64 315-378 1-66 (280)
183 COG0077 PheA Prephenate dehydr 94.0 0.29 6.2E-06 50.3 9.1 75 311-385 191-268 (279)
184 COG0077 PheA Prephenate dehydr 93.9 0.23 5.1E-06 50.9 8.3 72 77-148 192-268 (279)
185 PRK11898 prephenate dehydratas 93.8 0.33 7.2E-06 49.4 9.2 67 78-144 195-267 (283)
186 cd04932 ACT_AKiii-LysC-EC_1 AC 93.8 0.14 3.1E-06 42.1 5.5 56 321-382 11-71 (75)
187 cd04935 ACT_AKiii-DAPDC_1 ACT 93.8 0.25 5.5E-06 40.6 6.9 56 86-145 11-71 (75)
188 cd04871 ACT_PSP_2 ACT domains 93.7 0.067 1.5E-06 44.9 3.4 62 81-143 1-73 (84)
189 TIGR00656 asp_kin_monofn aspar 93.7 0.62 1.3E-05 48.7 11.2 128 80-215 261-396 (401)
190 cd04871 ACT_PSP_2 ACT domains 93.7 0.078 1.7E-06 44.5 3.7 63 317-379 2-72 (84)
191 PRK08198 threonine dehydratase 93.6 0.33 7.2E-06 50.9 9.1 65 78-142 326-396 (404)
192 TIGR01270 Trp_5_monoox tryptop 93.6 0.38 8.3E-06 52.5 9.5 79 308-386 25-105 (464)
193 cd04891 ACT_AK-LysC-DapG-like_ 93.5 0.28 6E-06 36.0 6.1 51 86-138 8-59 (61)
194 COG2061 ACT-domain-containing 93.5 2.2 4.7E-05 40.8 13.1 137 76-215 2-153 (170)
195 PRK08818 prephenate dehydrogen 93.4 0.14 3E-06 54.2 5.8 52 314-366 295-347 (370)
196 TIGR00656 asp_kin_monofn aspar 93.4 0.4 8.7E-06 50.1 9.2 127 315-451 261-395 (401)
197 cd04891 ACT_AK-LysC-DapG-like_ 93.1 0.31 6.8E-06 35.8 5.8 53 321-376 8-60 (61)
198 PRK10622 pheA bifunctional cho 93.1 0.43 9.4E-06 50.7 9.0 68 314-381 297-367 (386)
199 PRK03059 PII uridylyl-transfer 92.9 0.3 6.5E-06 56.7 8.0 68 78-145 785-856 (856)
200 cd04934 ACT_AK-Hom3_1 CT domai 92.9 0.28 6.1E-06 40.2 5.7 56 321-382 11-69 (73)
201 PRK08818 prephenate dehydrogen 92.9 0.3 6.6E-06 51.6 7.4 50 79-128 295-346 (370)
202 PRK12483 threonine dehydratase 92.8 2.5 5.3E-05 46.9 14.6 132 78-217 344-504 (521)
203 cd04912 ACT_AKiii-LysC-EC-like 92.8 0.51 1.1E-05 38.2 7.0 52 86-141 11-67 (75)
204 PRK10622 pheA bifunctional cho 92.7 0.39 8.5E-06 51.0 8.1 68 79-146 297-369 (386)
205 cd04906 ACT_ThrD-I_1 First of 92.7 0.58 1.3E-05 38.9 7.5 74 80-157 2-78 (85)
206 PRK11898 prephenate dehydratas 92.7 0.67 1.5E-05 47.1 9.4 68 314-381 196-267 (283)
207 cd04932 ACT_AKiii-LysC-EC_1 AC 92.6 0.35 7.7E-06 39.8 6.0 56 86-145 11-71 (75)
208 cd04890 ACT_AK-like_1 ACT doma 92.5 0.33 7.1E-06 37.3 5.4 49 322-376 11-61 (62)
209 cd04919 ACT_AK-Hom3_2 ACT doma 92.4 0.3 6.4E-06 37.6 5.0 52 322-379 12-63 (66)
210 cd04936 ACT_AKii-LysC-BS-like_ 92.3 0.56 1.2E-05 35.2 6.3 52 321-380 10-61 (63)
211 PRK05092 PII uridylyl-transfer 92.2 0.43 9.3E-06 55.8 8.2 66 78-144 842-915 (931)
212 PRK12483 threonine dehydratase 92.0 3.1 6.8E-05 46.0 14.1 133 313-454 344-504 (521)
213 COG2150 Predicted regulator of 91.7 0.7 1.5E-05 44.2 7.5 71 77-149 91-165 (167)
214 PRK02047 hypothetical protein; 91.6 1.9 4.1E-05 37.2 9.5 73 313-385 15-90 (91)
215 TIGR01268 Phe4hydrox_tetr phen 91.6 0.93 2E-05 49.2 9.3 65 79-143 16-84 (436)
216 cd04890 ACT_AK-like_1 ACT doma 91.5 0.57 1.2E-05 35.9 5.7 50 86-139 10-61 (62)
217 PLN02317 arogenate dehydratase 91.4 1.1 2.3E-05 48.0 9.4 70 314-383 283-369 (382)
218 PRK15385 magnesium transport p 91.3 1.7 3.8E-05 43.4 10.2 74 313-386 141-219 (225)
219 cd04934 ACT_AK-Hom3_1 CT domai 91.3 0.67 1.5E-05 38.0 6.2 55 86-144 11-68 (73)
220 cd04922 ACT_AKi-HSDH-ThrA_2 AC 91.3 0.68 1.5E-05 35.3 5.9 51 322-378 12-62 (66)
221 PRK06635 aspartate kinase; Rev 91.2 1.2 2.6E-05 46.7 9.5 121 321-451 270-398 (404)
222 TIGR01268 Phe4hydrox_tetr phen 91.1 1.2 2.5E-05 48.5 9.5 67 314-380 16-84 (436)
223 COG3830 ACT domain-containing 91.0 0.24 5.3E-06 43.1 3.4 52 312-365 1-52 (90)
224 cd04924 ACT_AK-Arch_2 ACT doma 91.0 0.7 1.5E-05 35.1 5.7 53 322-380 12-64 (66)
225 PLN02550 threonine dehydratase 90.9 3.7 7.9E-05 46.3 13.4 135 313-455 416-575 (591)
226 cd04933 ACT_AK1-AT_1 ACT domai 90.9 0.62 1.3E-05 39.0 5.7 40 321-366 11-50 (78)
227 PRK08210 aspartate kinase I; R 90.8 3.8 8.3E-05 43.1 12.8 120 80-214 272-397 (403)
228 PRK03381 PII uridylyl-transfer 90.7 0.66 1.4E-05 53.3 7.6 64 315-380 600-666 (774)
229 TIGR01693 UTase_glnD [Protein- 90.7 0.77 1.7E-05 53.1 8.2 135 314-465 668-816 (850)
230 TIGR01270 Trp_5_monoox tryptop 90.4 1.2 2.6E-05 48.7 8.8 73 77-149 29-105 (464)
231 cd04916 ACT_AKiii-YclM-BS_2 AC 90.2 0.88 1.9E-05 34.7 5.7 51 322-378 12-62 (66)
232 PLN02550 threonine dehydratase 90.0 5.3 0.00012 45.0 13.6 133 77-217 415-574 (591)
233 cd04936 ACT_AKii-LysC-BS-like_ 89.8 1.9 4E-05 32.3 7.1 50 86-141 10-59 (63)
234 PRK05007 PII uridylyl-transfer 89.8 1 2.2E-05 52.5 8.3 66 315-380 702-772 (884)
235 PLN02317 arogenate dehydratase 89.6 1.6 3.6E-05 46.6 9.0 67 79-145 283-368 (382)
236 COG0527 LysC Aspartokinases [A 89.0 6.2 0.00014 43.0 13.0 124 80-214 311-441 (447)
237 PRK08210 aspartate kinase I; R 88.6 3.2 6.9E-05 43.7 10.2 119 316-451 273-397 (403)
238 PRK01759 glnD PII uridylyl-tra 88.6 1.2 2.7E-05 51.7 7.8 127 315-462 678-817 (854)
239 cd04933 ACT_AK1-AT_1 ACT domai 88.4 1.5 3.1E-05 36.8 6.1 40 86-129 11-50 (78)
240 cd04892 ACT_AK-like_2 ACT doma 88.4 1.1 2.4E-05 33.0 4.9 53 321-379 10-62 (65)
241 PRK00275 glnD PII uridylyl-tra 88.3 1.4 3.1E-05 51.5 8.0 66 78-143 813-885 (895)
242 TIGR00657 asp_kinases aspartat 87.6 3 6.4E-05 44.6 9.4 115 90-215 315-437 (441)
243 cd04914 ACT_AKi-DapG-BS_1 ACT 87.6 1.4 2.9E-05 35.3 5.2 39 321-365 9-47 (67)
244 PRK08639 threonine dehydratase 87.5 3.9 8.4E-05 43.6 10.2 82 312-396 334-417 (420)
245 PRK15385 magnesium transport p 87.5 4.7 0.0001 40.4 10.0 73 77-149 140-219 (225)
246 COG3830 ACT domain-containing 87.5 0.63 1.4E-05 40.6 3.4 46 77-124 1-46 (90)
247 cd04919 ACT_AK-Hom3_2 ACT doma 87.4 1.7 3.7E-05 33.4 5.5 51 87-141 12-62 (66)
248 cd04924 ACT_AK-Arch_2 ACT doma 87.3 2 4.4E-05 32.6 5.9 53 86-142 11-63 (66)
249 PF04350 PilO: Pilus assembly 87.3 1.5 3.2E-05 38.9 5.8 65 88-152 51-120 (144)
250 PRK08526 threonine dehydratase 87.3 2.7 5.8E-05 44.8 8.8 67 313-379 325-395 (403)
251 cd04916 ACT_AKiii-YclM-BS_2 AC 87.2 2.3 5E-05 32.4 6.1 52 86-141 11-62 (66)
252 PF13840 ACT_7: ACT domain ; P 87.0 1.4 3.1E-05 35.1 5.0 46 323-377 19-64 (65)
253 PRK00907 hypothetical protein; 86.9 4.7 0.0001 35.1 8.5 72 313-384 16-90 (92)
254 cd04892 ACT_AK-like_2 ACT doma 86.8 1.8 3.8E-05 31.9 5.2 53 86-142 10-62 (65)
255 COG0527 LysC Aspartokinases [A 86.2 5.9 0.00013 43.1 10.8 123 316-451 312-441 (447)
256 TIGR02079 THD1 threonine dehyd 86.2 4.9 0.00011 42.8 10.0 81 313-396 324-406 (409)
257 cd04918 ACT_AK1-AT_2 ACT domai 85.9 2.4 5.3E-05 33.3 5.8 50 323-378 12-61 (65)
258 cd04922 ACT_AKi-HSDH-ThrA_2 AC 85.6 2.3 5.1E-05 32.3 5.5 52 86-141 11-62 (66)
259 PRK09034 aspartate kinase; Rev 85.5 12 0.00027 40.4 12.8 116 88-214 320-445 (454)
260 PRK04374 PII uridylyl-transfer 85.5 2.6 5.7E-05 49.3 8.2 65 315-379 691-758 (869)
261 PF09383 NIL: NIL domain; Int 85.2 2.9 6.2E-05 33.9 6.0 56 163-218 4-71 (76)
262 cd04911 ACT_AKiii-YclM-BS_1 AC 84.8 2.4 5.1E-05 35.8 5.5 60 320-385 10-72 (76)
263 PRK01759 glnD PII uridylyl-tra 84.8 3 6.4E-05 48.7 8.1 64 314-378 783-851 (854)
264 COG0788 PurU Formyltetrahydrof 84.6 2.4 5.1E-05 43.7 6.4 178 77-267 5-218 (287)
265 cd04923 ACT_AK-LysC-DapG-like_ 84.4 3.1 6.8E-05 31.0 5.6 50 321-378 10-59 (63)
266 PRK09084 aspartate kinase III; 84.3 12 0.00027 40.4 12.1 113 323-451 318-442 (448)
267 PRK04998 hypothetical protein; 84.2 8.3 0.00018 32.9 8.6 71 313-383 14-85 (88)
268 cd04868 ACT_AK-like ACT domain 84.0 4.2 9.2E-05 29.2 6.0 47 88-138 12-58 (60)
269 PLN02551 aspartokinase 83.9 8.2 0.00018 42.8 10.7 113 323-451 378-504 (521)
270 cd04918 ACT_AK1-AT_2 ACT domai 83.4 4 8.7E-05 32.1 6.0 50 88-141 12-61 (65)
271 cd04868 ACT_AK-like ACT domain 83.3 3.5 7.5E-05 29.6 5.3 48 323-376 12-59 (60)
272 cd04923 ACT_AK-LysC-DapG-like_ 83.1 7.7 0.00017 28.9 7.3 50 86-141 10-59 (63)
273 PRK09084 aspartate kinase III; 83.0 24 0.00051 38.3 13.6 113 88-214 318-442 (448)
274 PF09383 NIL: NIL domain; Int 82.7 3.1 6.7E-05 33.7 5.2 59 400-458 4-75 (76)
275 TIGR00657 asp_kinases aspartat 82.4 7.1 0.00015 41.7 9.3 114 325-451 315-436 (441)
276 PRK09977 putative Mg(2+) trans 82.2 8.9 0.00019 38.0 9.2 69 315-386 145-213 (215)
277 PF04350 PilO: Pilus assembly 81.9 5.4 0.00012 35.3 6.9 68 323-390 51-121 (144)
278 PRK09034 aspartate kinase; Rev 81.8 13 0.00027 40.4 10.9 116 323-451 320-445 (454)
279 cd04914 ACT_AKi-DapG-BS_1 ACT 81.5 4.3 9.4E-05 32.4 5.6 38 86-127 9-46 (67)
280 PRK14434 acylphosphatase; Prov 81.4 3.7 8E-05 35.4 5.5 44 409-452 17-64 (92)
281 PRK06291 aspartate kinase; Pro 81.4 9.1 0.0002 41.5 9.7 121 87-215 332-459 (465)
282 cd04921 ACT_AKi-HSDH-ThrA-like 81.4 5.7 0.00012 31.7 6.3 40 321-364 11-50 (80)
283 PRK14434 acylphosphatase; Prov 81.2 3.7 8.1E-05 35.3 5.5 45 171-215 16-64 (92)
284 TIGR01124 ilvA_2Cterm threonin 81.2 9.8 0.00021 41.9 10.0 77 313-394 324-401 (499)
285 cd04915 ACT_AK-Ectoine_2 ACT d 81.0 4.4 9.6E-05 32.2 5.5 49 324-378 14-62 (66)
286 PF13840 ACT_7: ACT domain ; P 80.8 2.9 6.2E-05 33.3 4.3 46 88-140 19-64 (65)
287 PRK08961 bifunctional aspartat 80.8 26 0.00057 41.0 13.8 114 322-451 333-456 (861)
288 COG0788 PurU Formyltetrahydrof 80.6 15 0.00033 38.0 10.4 150 311-474 4-180 (287)
289 PLN02551 aspartokinase 80.6 22 0.00048 39.5 12.5 114 88-215 378-505 (521)
290 cd04937 ACT_AKi-DapG-BS_2 ACT 80.4 6.3 0.00014 30.7 6.1 49 87-141 12-60 (64)
291 cd04937 ACT_AKi-DapG-BS_2 ACT 80.2 4 8.7E-05 31.9 4.9 50 322-379 12-61 (64)
292 PRK08961 bifunctional aspartat 79.6 26 0.00057 41.0 13.3 116 86-215 332-457 (861)
293 PRK09181 aspartate kinase; Val 78.9 15 0.00033 40.3 10.5 114 323-450 341-460 (475)
294 cd04911 ACT_AKiii-YclM-BS_1 AC 78.9 5.7 0.00012 33.5 5.7 59 85-147 10-71 (76)
295 PF02700 PurS: Phosphoribosylf 78.2 10 0.00022 32.1 7.0 55 315-376 1-65 (80)
296 PRK00341 hypothetical protein; 77.9 16 0.00035 31.6 8.3 69 314-383 17-88 (91)
297 PRK08526 threonine dehydratase 77.7 10 0.00023 40.4 8.6 65 78-142 325-395 (403)
298 COG2844 GlnD UTP:GlnB (protein 77.3 6.2 0.00013 46.1 7.2 43 76-118 788-830 (867)
299 PRK14426 acylphosphatase; Prov 77.2 6.5 0.00014 33.7 5.7 45 171-215 18-64 (92)
300 PRK09224 threonine dehydratase 77.1 15 0.00033 40.3 9.9 77 313-394 327-405 (504)
301 PF02700 PurS: Phosphoribosylf 77.0 10 0.00022 32.1 6.7 55 80-139 1-65 (80)
302 PRK14426 acylphosphatase; Prov 76.6 7.3 0.00016 33.4 5.8 45 409-453 19-65 (92)
303 PRK09181 aspartate kinase; Val 76.5 37 0.0008 37.4 12.5 115 88-214 341-461 (475)
304 PRK06291 aspartate kinase; Pro 76.3 10 0.00022 41.1 8.2 119 323-451 333-458 (465)
305 PRK08639 threonine dehydratase 76.1 18 0.0004 38.6 10.0 79 78-159 335-417 (420)
306 cd04915 ACT_AK-Ectoine_2 ACT d 74.7 9.3 0.0002 30.4 5.6 49 89-141 14-62 (66)
307 PRK14429 acylphosphatase; Prov 74.5 9.4 0.0002 32.6 5.9 44 409-452 17-62 (90)
308 PRK14429 acylphosphatase; Prov 74.3 8.9 0.00019 32.7 5.8 45 171-215 16-62 (90)
309 PRK09977 putative Mg(2+) trans 74.2 21 0.00047 35.4 9.2 68 79-149 144-213 (215)
310 PF04455 Saccharop_dh_N: LOR/S 74.0 8.4 0.00018 34.3 5.7 57 325-382 15-74 (103)
311 TIGR01124 ilvA_2Cterm threonin 73.4 20 0.00043 39.6 9.6 116 78-215 324-442 (499)
312 PF00708 Acylphosphatase: Acyl 73.0 7.4 0.00016 32.7 5.0 43 410-452 20-64 (91)
313 PRK09466 metL bifunctional asp 72.8 38 0.00083 39.7 12.1 116 323-451 329-449 (810)
314 TIGR02079 THD1 threonine dehyd 72.7 25 0.00054 37.6 9.9 80 78-159 324-406 (409)
315 PF00708 Acylphosphatase: Acyl 72.6 7.6 0.00016 32.7 4.9 45 171-215 18-64 (91)
316 PRK09466 metL bifunctional asp 72.3 51 0.0011 38.7 13.0 117 88-215 329-450 (810)
317 cd04921 ACT_AKi-HSDH-ThrA-like 72.1 13 0.00028 29.7 5.9 40 86-127 11-50 (80)
318 PRK14428 acylphosphatase; Prov 72.1 12 0.00026 32.8 6.1 44 409-452 23-68 (97)
319 PRK09224 threonine dehydratase 71.7 20 0.00044 39.4 9.2 121 78-220 327-452 (504)
320 PRK14428 acylphosphatase; Prov 71.5 12 0.00026 32.8 5.9 45 171-215 22-68 (97)
321 PRK14420 acylphosphatase; Prov 71.3 10 0.00022 32.2 5.4 45 171-215 16-62 (91)
322 PF04359 DUF493: Protein of un 71.3 19 0.00042 30.1 7.0 73 313-385 9-84 (85)
323 PRK14420 acylphosphatase; Prov 70.9 11 0.00025 32.0 5.6 44 409-452 17-62 (91)
324 PRK14445 acylphosphatase; Prov 70.9 11 0.00024 32.2 5.6 44 409-452 19-64 (91)
325 PF10741 T2SM_b: Type II secre 70.8 21 0.00046 31.0 7.4 63 91-153 17-84 (110)
326 PRK14449 acylphosphatase; Prov 70.0 14 0.00029 31.6 5.9 44 409-452 18-63 (90)
327 PRK14445 acylphosphatase; Prov 69.7 12 0.00026 32.0 5.5 45 171-215 18-64 (91)
328 PRK14436 acylphosphatase; Prov 69.6 14 0.00029 31.8 5.8 44 409-452 19-64 (91)
329 PRK14449 acylphosphatase; Prov 69.1 14 0.0003 31.5 5.8 45 171-215 17-63 (90)
330 cd04910 ACT_AK-Ectoine_1 ACT d 69.0 19 0.00042 29.9 6.4 51 89-143 14-64 (71)
331 PRK14422 acylphosphatase; Prov 68.8 14 0.0003 31.9 5.7 44 409-452 21-66 (93)
332 PRK14422 acylphosphatase; Prov 68.3 13 0.00029 32.0 5.6 45 171-215 20-66 (93)
333 cd04917 ACT_AKiii-LysC-EC_2 AC 68.0 17 0.00036 28.1 5.6 49 322-378 12-60 (64)
334 PRK14442 acylphosphatase; Prov 67.6 14 0.0003 31.7 5.5 44 409-452 19-64 (91)
335 PRK14436 acylphosphatase; Prov 67.5 15 0.00033 31.5 5.7 45 171-215 18-64 (91)
336 cd04920 ACT_AKiii-DAPDC_2 ACT 67.3 17 0.00038 28.5 5.6 49 322-378 11-59 (63)
337 PRK14444 acylphosphatase; Prov 67.2 16 0.00036 31.3 5.9 43 409-451 19-63 (92)
338 PRK14442 acylphosphatase; Prov 66.9 14 0.0003 31.7 5.4 45 171-215 18-64 (91)
339 PF00585 Thr_dehydrat_C: C-ter 66.6 35 0.00076 29.1 7.8 81 311-395 7-88 (91)
340 PRK14435 acylphosphatase; Prov 66.6 15 0.00032 31.5 5.4 45 171-215 16-62 (90)
341 PRK14435 acylphosphatase; Prov 66.4 16 0.00034 31.3 5.5 44 409-452 17-62 (90)
342 PRK00227 glnD PII uridylyl-tra 66.2 29 0.00062 40.1 9.2 46 80-126 547-593 (693)
343 PRK14427 acylphosphatase; Prov 66.2 17 0.00038 31.3 5.8 44 409-452 21-66 (94)
344 PRK14433 acylphosphatase; Prov 66.1 16 0.00035 31.1 5.6 44 409-452 16-61 (87)
345 PF10741 T2SM_b: Type II secre 66.1 36 0.00079 29.6 7.9 65 326-390 17-84 (110)
346 PRK14433 acylphosphatase; Prov 65.9 16 0.00034 31.2 5.4 45 171-215 15-61 (87)
347 PRK14439 acylphosphatase; Prov 65.8 16 0.00034 35.2 6.0 46 409-454 90-137 (163)
348 PRK14447 acylphosphatase; Prov 65.7 17 0.00038 31.3 5.8 43 409-451 19-64 (95)
349 PRK14421 acylphosphatase; Prov 65.7 19 0.0004 31.7 6.0 44 409-452 19-64 (99)
350 PRK14423 acylphosphatase; Prov 65.3 18 0.00039 31.0 5.8 43 410-452 21-65 (92)
351 PRK14421 acylphosphatase; Prov 65.2 18 0.0004 31.7 5.9 45 171-215 18-64 (99)
352 PRK14427 acylphosphatase; Prov 65.2 17 0.00038 31.3 5.7 45 171-215 20-66 (94)
353 PRK14451 acylphosphatase; Prov 64.9 18 0.00038 31.0 5.6 43 410-452 19-63 (89)
354 PF01985 CRS1_YhbY: CRS1 / Yhb 64.6 65 0.0014 27.1 8.9 68 367-434 4-82 (84)
355 PRK14430 acylphosphatase; Prov 64.5 19 0.00041 31.1 5.7 44 409-452 19-64 (92)
356 PRK14444 acylphosphatase; Prov 64.4 19 0.00042 30.9 5.8 45 171-215 18-64 (92)
357 PF04455 Saccharop_dh_N: LOR/S 64.3 22 0.00047 31.8 6.2 56 90-145 15-74 (103)
358 PRK14451 acylphosphatase; Prov 64.2 18 0.00038 31.0 5.5 45 171-215 17-63 (89)
359 PRK14441 acylphosphatase; Prov 64.2 19 0.00041 31.0 5.7 44 409-452 20-65 (93)
360 PRK14423 acylphosphatase; Prov 64.1 19 0.00041 30.9 5.6 45 171-215 19-65 (92)
361 PRK14439 acylphosphatase; Prov 64.1 17 0.00037 35.0 5.8 47 171-217 89-137 (163)
362 PRK14430 acylphosphatase; Prov 63.8 19 0.00041 31.0 5.6 45 171-215 18-64 (92)
363 PRK14438 acylphosphatase; Prov 63.4 20 0.00044 30.6 5.7 44 409-452 18-63 (91)
364 PRK14446 acylphosphatase; Prov 63.3 15 0.00031 31.6 4.8 43 410-452 18-62 (88)
365 PRK14447 acylphosphatase; Prov 63.2 20 0.00043 31.0 5.7 44 171-214 18-64 (95)
366 PRK14425 acylphosphatase; Prov 63.0 22 0.00048 30.7 5.9 44 409-452 21-66 (94)
367 PRK14432 acylphosphatase; Prov 62.5 20 0.00044 30.9 5.6 45 171-215 16-63 (93)
368 PF14257 DUF4349: Domain of un 62.5 1.4E+02 0.0031 29.6 12.4 73 77-149 49-124 (262)
369 PF01985 CRS1_YhbY: CRS1 / Yhb 62.4 50 0.0011 27.8 7.8 35 163-197 44-82 (84)
370 PRK14432 acylphosphatase; Prov 62.4 21 0.00046 30.8 5.7 44 409-452 17-63 (93)
371 cd04907 ACT_ThrD-I_2 Second of 62.2 85 0.0018 26.3 9.1 76 315-394 2-77 (81)
372 PRK14438 acylphosphatase; Prov 62.0 21 0.00046 30.5 5.6 45 171-215 17-63 (91)
373 PRK14441 acylphosphatase; Prov 61.6 22 0.00047 30.7 5.6 45 171-215 19-65 (93)
374 PRK14446 acylphosphatase; Prov 61.5 16 0.00034 31.4 4.7 45 171-215 16-62 (88)
375 PRK05925 aspartate kinase; Pro 61.4 1E+02 0.0022 33.6 11.9 112 324-451 311-429 (440)
376 cd04917 ACT_AKiii-LysC-EC_2 AC 61.4 29 0.00064 26.8 5.9 49 87-141 12-60 (64)
377 PRK02047 hypothetical protein; 61.2 62 0.0014 27.9 8.3 69 78-146 15-88 (91)
378 PRK14425 acylphosphatase; Prov 60.9 24 0.00052 30.5 5.8 45 171-215 20-66 (94)
379 PRK10820 DNA-binding transcrip 60.7 25 0.00053 38.7 7.2 69 317-390 3-72 (520)
380 PRK14443 acylphosphatase; Prov 60.5 27 0.00058 30.4 6.0 45 409-453 19-65 (93)
381 PRK14440 acylphosphatase; Prov 60.3 25 0.00055 30.1 5.8 45 409-453 18-64 (90)
382 PRK09436 thrA bifunctional asp 60.1 29 0.00062 40.6 7.9 121 322-452 326-457 (819)
383 PRK14440 acylphosphatase; Prov 59.7 25 0.00054 30.1 5.6 45 171-215 17-63 (90)
384 PRK14443 acylphosphatase; Prov 59.7 27 0.00058 30.4 5.8 45 171-215 18-64 (93)
385 PRK09436 thrA bifunctional asp 59.2 39 0.00084 39.6 8.8 122 86-215 325-457 (819)
386 PRK14448 acylphosphatase; Prov 58.5 27 0.00059 29.8 5.6 43 410-452 18-62 (90)
387 PRK14450 acylphosphatase; Prov 57.9 27 0.00059 29.8 5.6 44 409-452 17-63 (91)
388 cd04920 ACT_AKiii-DAPDC_2 ACT 57.6 43 0.00093 26.2 6.3 48 87-140 11-58 (63)
389 TIGR01269 Tyr_3_monoox tyrosin 57.4 48 0.001 36.6 8.5 74 309-383 34-111 (457)
390 PRK14448 acylphosphatase; Prov 57.3 28 0.00061 29.8 5.5 45 171-215 16-62 (90)
391 COG1828 PurS Phosphoribosylfor 57.0 34 0.00073 29.6 5.9 43 80-127 2-49 (83)
392 PRK14452 acylphosphatase; Prov 56.9 29 0.00064 30.9 5.7 45 409-453 35-81 (107)
393 PRK08841 aspartate kinase; Val 56.8 28 0.0006 37.2 6.6 60 315-382 319-378 (392)
394 COG1828 PurS Phosphoribosylfor 56.8 35 0.00075 29.5 5.9 50 315-371 2-57 (83)
395 PRK14437 acylphosphatase; Prov 56.5 27 0.00059 31.2 5.5 44 409-452 38-83 (109)
396 PRK14450 acylphosphatase; Prov 56.4 29 0.00062 29.6 5.4 45 171-215 16-63 (91)
397 COG2844 GlnD UTP:GlnB (protein 56.0 33 0.00071 40.5 7.3 49 313-361 790-838 (867)
398 PRK14637 hypothetical protein; 55.0 1.2E+02 0.0026 28.6 9.7 104 89-201 7-130 (151)
399 PRK14437 acylphosphatase; Prov 55.0 29 0.00063 31.0 5.4 45 171-215 37-83 (109)
400 cd04910 ACT_AK-Ectoine_1 ACT d 54.9 39 0.00084 28.1 5.8 44 172-215 17-62 (71)
401 PRK14452 acylphosphatase; Prov 54.9 32 0.00069 30.7 5.6 45 171-215 34-80 (107)
402 PRK14424 acylphosphatase; Prov 54.8 33 0.00071 29.8 5.6 44 409-452 22-67 (94)
403 PRK00907 hypothetical protein; 54.2 92 0.002 27.2 8.2 69 78-146 16-89 (92)
404 PF00585 Thr_dehydrat_C: C-ter 54.0 82 0.0018 26.9 7.8 77 77-157 8-87 (91)
405 PRK05783 hypothetical protein; 53.7 62 0.0013 27.9 7.0 60 78-142 1-67 (84)
406 PF00013 KH_1: KH domain syndr 53.6 50 0.0011 25.2 5.9 41 172-213 18-60 (60)
407 PRK10820 DNA-binding transcrip 53.5 34 0.00074 37.7 6.8 68 82-152 3-71 (520)
408 PF02641 DUF190: Uncharacteriz 53.1 15 0.00032 31.9 3.2 34 182-215 52-86 (101)
409 PRK04998 hypothetical protein; 52.3 1E+02 0.0022 26.3 8.1 69 78-146 14-85 (88)
410 cd03709 lepA_C lepA_C: This fa 52.2 43 0.00094 27.5 5.7 55 161-215 3-61 (80)
411 PRK14424 acylphosphatase; Prov 52.0 37 0.0008 29.5 5.5 45 171-215 21-67 (94)
412 PRK14431 acylphosphatase; Prov 51.3 41 0.0009 28.8 5.6 42 410-452 18-61 (89)
413 PF00013 KH_1: KH domain syndr 51.1 59 0.0013 24.8 6.0 40 410-450 19-60 (60)
414 PRK05783 hypothetical protein; 49.8 65 0.0014 27.8 6.5 60 313-379 1-67 (84)
415 cd03710 BipA_TypA_C BipA_TypA_ 49.8 42 0.0009 27.5 5.2 55 161-215 3-60 (79)
416 PRK05925 aspartate kinase; Pro 49.5 3.2E+02 0.0068 29.9 13.2 112 89-214 311-429 (440)
417 cd03709 lepA_C lepA_C: This fa 49.1 53 0.0012 27.0 5.8 55 398-452 3-61 (80)
418 PF02641 DUF190: Uncharacteriz 48.5 21 0.00045 31.0 3.4 35 419-453 52-87 (101)
419 PRK14431 acylphosphatase; Prov 46.9 65 0.0014 27.6 6.1 44 171-215 16-61 (89)
420 PF08753 NikR_C: NikR C termin 46.5 1.7E+02 0.0037 24.3 9.3 70 81-150 3-74 (78)
421 TIGR00302 phosphoribosylformyl 46.5 71 0.0015 26.6 6.2 54 81-139 2-65 (80)
422 cd03710 BipA_TypA_C BipA_TypA_ 46.0 47 0.001 27.2 5.0 54 399-452 4-60 (79)
423 TIGR00302 phosphoribosylformyl 45.8 73 0.0016 26.6 6.1 54 316-376 2-65 (80)
424 PF03462 PCRF: PCRF domain; I 45.0 61 0.0013 28.8 5.9 38 328-365 69-106 (115)
425 PRK00227 glnD PII uridylyl-tra 45.0 57 0.0012 37.8 7.1 87 315-406 547-639 (693)
426 PF03927 NapD: NapD protein; 44.0 1.2E+02 0.0025 25.5 7.1 65 80-149 4-70 (79)
427 TIGR01269 Tyr_3_monoox tyrosin 43.1 1E+02 0.0022 34.2 8.2 70 79-149 39-114 (457)
428 cd02393 PNPase_KH Polynucleoti 42.5 64 0.0014 25.4 5.1 40 172-213 20-60 (61)
429 cd02393 PNPase_KH Polynucleoti 42.4 67 0.0015 25.3 5.1 39 411-451 22-61 (61)
430 PRK14645 hypothetical protein; 41.5 1.1E+02 0.0023 29.0 7.2 110 86-205 5-136 (154)
431 cd04907 ACT_ThrD-I_2 Second of 41.1 2.1E+02 0.0046 23.9 9.3 73 80-157 2-77 (81)
432 KOG2972 Uncharacterized conser 39.5 20 0.00043 36.8 2.2 65 317-387 207-271 (276)
433 PRK05974 phosphoribosylformylg 39.0 86 0.0019 26.1 5.6 54 316-376 2-65 (80)
434 PF02576 DUF150: Uncharacteris 38.9 1.8E+02 0.004 26.4 8.2 105 96-205 2-126 (141)
435 COG2921 Uncharacterized conser 37.8 2.3E+02 0.005 25.1 8.0 72 314-385 15-89 (90)
436 PF03927 NapD: NapD protein; 37.6 1.6E+02 0.0034 24.7 6.9 65 315-386 4-70 (79)
437 PF13399 LytR_C: LytR cell env 37.0 1.2E+02 0.0025 25.1 6.1 59 316-377 3-65 (90)
438 PRK00341 hypothetical protein; 36.7 2.2E+02 0.0049 24.6 7.9 67 79-146 17-88 (91)
439 PRK05974 phosphoribosylformylg 36.4 1.3E+02 0.0028 25.1 6.2 54 81-139 2-65 (80)
440 TIGR00300 conserved hypothetic 35.9 79 0.0017 34.5 6.0 54 325-379 15-71 (407)
441 PRK14640 hypothetical protein; 35.8 3.7E+02 0.0081 25.2 10.2 107 91-204 7-135 (152)
442 KOG2797 Prephenate dehydratase 35.7 1.5E+02 0.0033 31.7 7.9 36 79-114 281-316 (377)
443 PF09377 SBDS_C: SBDS protein 35.1 1.7E+02 0.0037 26.5 7.3 99 89-214 21-123 (125)
444 PF00560 LRR_1: Leucine Rich R 34.4 14 0.00031 23.5 0.2 12 9-20 3-14 (22)
445 cd01514 Elongation_Factor_C El 33.7 1.1E+02 0.0023 24.6 5.3 56 398-453 3-61 (79)
446 PF09186 DUF1949: Domain of un 33.6 1.3E+02 0.0028 22.3 5.3 48 168-215 3-51 (56)
447 COG2102 Predicted ATPases of P 32.7 1.1E+02 0.0025 30.8 6.2 100 356-455 61-174 (223)
448 PRK08841 aspartate kinase; Val 32.0 1.1E+02 0.0024 32.7 6.4 57 81-143 320-376 (392)
449 cd01514 Elongation_Factor_C El 31.4 1.1E+02 0.0024 24.6 4.9 55 161-215 3-60 (79)
450 COG1993 PII-like signaling pro 30.9 38 0.00083 30.7 2.3 34 182-215 55-89 (109)
451 PRK14636 hypothetical protein; 30.3 5.1E+02 0.011 25.0 11.1 104 90-200 5-132 (176)
452 PF09186 DUF1949: Domain of un 30.1 1.5E+02 0.0032 22.0 5.1 49 404-452 2-51 (56)
453 PF13504 LRR_7: Leucine rich r 30.0 17 0.00036 22.2 -0.1 13 8-20 3-15 (17)
454 KOG2219 Uncharacterized conser 29.4 63 0.0014 37.4 4.1 48 2-57 795-842 (864)
455 PRK14646 hypothetical protein; 29.0 5E+02 0.011 24.5 10.1 107 91-203 8-137 (155)
456 cd03713 EFG_mtEFG_C EFG_mtEFG_ 28.7 1.2E+02 0.0027 24.3 4.8 55 399-453 4-60 (78)
457 cd03711 Tet_C Tet_C: C-terminu 28.5 1.3E+02 0.0029 24.3 5.0 55 161-215 3-59 (78)
458 cd03711 Tet_C Tet_C: C-terminu 28.4 1.5E+02 0.0033 23.9 5.3 56 398-453 3-60 (78)
459 cd03713 EFG_mtEFG_C EFG_mtEFG_ 28.3 1.1E+02 0.0024 24.6 4.5 55 161-215 3-59 (78)
460 COG2102 Predicted ATPases of P 27.5 1.2E+02 0.0027 30.6 5.4 118 101-218 21-174 (223)
461 PF00107 ADH_zinc_N: Zinc-bind 27.1 1E+02 0.0022 26.2 4.3 42 175-221 46-87 (130)
462 PF04359 DUF493: Protein of un 27.1 2.5E+02 0.0055 23.4 6.5 69 78-146 9-82 (85)
463 PF08753 NikR_C: NikR C termin 27.0 3.7E+02 0.0079 22.3 8.7 70 316-387 3-74 (78)
464 PRK14645 hypothetical protein; 26.9 2.8E+02 0.006 26.3 7.4 113 321-443 5-137 (154)
465 PRK00092 ribosome maturation p 26.9 5.2E+02 0.011 24.0 11.4 107 91-202 8-134 (154)
466 COG1993 PII-like signaling pro 26.2 51 0.0011 29.9 2.3 34 419-452 55-89 (109)
467 TIGR03737 PRTRC_B PRTRC system 25.5 56 0.0012 33.0 2.6 28 13-40 65-92 (228)
468 KOG2797 Prephenate dehydratase 24.9 1.1E+02 0.0023 32.8 4.6 44 309-352 276-319 (377)
469 cd02394 vigilin_like_KH K homo 24.8 1.7E+02 0.0037 22.4 4.7 39 174-213 20-61 (62)
470 PF01709 Transcrip_reg: Transc 24.8 1.3E+02 0.0027 30.3 5.0 60 324-387 172-231 (234)
471 cd04097 mtEFG1_C mtEFG1_C: C-t 24.7 1.6E+02 0.0034 23.9 4.7 55 161-215 3-59 (78)
472 COG1534 Predicted RNA-binding 24.4 5.1E+02 0.011 23.1 8.1 40 400-439 45-88 (97)
473 COG1534 Predicted RNA-binding 24.2 3.9E+02 0.0084 23.9 7.3 59 126-201 26-87 (97)
474 PRK14640 hypothetical protein; 24.2 3.8E+02 0.0083 25.1 7.8 112 326-442 7-136 (152)
475 smart00838 EFG_C Elongation fa 24.0 1.8E+02 0.0039 23.8 5.0 56 398-453 5-62 (85)
476 cd04098 eEF2_C_snRNP eEF2_C_sn 23.9 1.9E+02 0.004 23.8 5.1 56 398-453 3-62 (80)
477 PF13399 LytR_C: LytR cell env 23.8 2.3E+02 0.005 23.3 5.7 58 82-140 4-65 (90)
478 smart00838 EFG_C Elongation fa 23.6 1.6E+02 0.0035 24.1 4.7 55 161-215 5-61 (85)
479 cd03063 TRX_Fd_FDH_beta TRX-li 23.5 73 0.0016 27.7 2.7 32 437-468 14-46 (92)
480 cd02394 vigilin_like_KH K homo 23.5 1.9E+02 0.0042 22.0 4.8 39 411-450 20-61 (62)
481 cd08230 glucose_DH Glucose deh 23.3 4.2E+02 0.009 26.8 8.5 85 360-457 176-266 (355)
482 cd04098 eEF2_C_snRNP eEF2_C_sn 23.2 1.6E+02 0.0036 24.1 4.6 56 161-216 3-62 (80)
483 cd04097 mtEFG1_C mtEFG1_C: C-t 23.1 1.9E+02 0.0042 23.4 5.0 55 399-453 4-60 (78)
484 PRK13558 bacterio-opsin activa 23.0 1.1E+03 0.023 26.3 13.8 132 80-223 450-586 (665)
485 TIGR00300 conserved hypothetic 23.0 1.9E+02 0.0042 31.6 6.2 54 90-143 15-72 (407)
486 PRK14634 hypothetical protein; 22.9 6.5E+02 0.014 23.7 11.3 107 90-203 7-137 (155)
487 PF05496 RuvB_N: Holliday junc 22.8 38 0.00082 34.3 0.9 19 20-38 48-66 (233)
488 PF10842 DUF2642: Protein of u 22.8 63 0.0014 26.8 2.0 23 418-440 31-53 (66)
489 cd04096 eEF2_snRNP_like_C eEF2 22.7 1.5E+02 0.0033 23.9 4.3 56 398-453 3-62 (80)
490 PF01709 Transcrip_reg: Transc 22.4 94 0.002 31.1 3.6 60 89-150 172-231 (234)
491 PRK14639 hypothetical protein; 22.3 4.6E+02 0.0099 24.3 7.8 92 99-199 6-117 (140)
492 PRK09880 L-idonate 5-dehydroge 21.9 4.5E+02 0.0098 26.5 8.4 88 359-456 172-262 (343)
493 KOG2972 Uncharacterized conser 21.9 58 0.0013 33.6 2.0 65 82-150 207-271 (276)
494 PRK14636 hypothetical protein; 21.8 6.2E+02 0.013 24.5 8.9 108 325-437 5-132 (176)
495 cd04096 eEF2_snRNP_like_C eEF2 21.4 1.5E+02 0.0032 24.0 4.0 55 161-215 3-61 (80)
496 PF00679 EFG_C: Elongation fac 21.3 1.4E+02 0.0031 24.8 4.0 54 399-452 7-63 (89)
497 PF00107 ADH_zinc_N: Zinc-bind 21.3 1.9E+02 0.0042 24.5 4.9 46 412-462 46-92 (130)
498 PRK14638 hypothetical protein; 21.1 6.9E+02 0.015 23.4 9.3 101 92-201 10-131 (150)
499 PF14257 DUF4349: Domain of un 20.7 8.4E+02 0.018 24.2 9.9 71 313-385 50-123 (262)
500 KOG0456 Aspartate kinase [Amin 20.2 1.3E+02 0.0028 33.3 4.2 53 320-378 480-532 (559)
No 1
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=7.6e-54 Score=400.99 Aligned_cols=170 Identities=54% Similarity=0.881 Sum_probs=166.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCch
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~ 392 (484)
|+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCCc
Q 011491 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 472 (484)
Q Consensus 393 ~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~~ 472 (484)
+|+||||||||++++++|.+|++++++|||||||++++++++|+||+++|+++|+++|+||||+|++|||++||.|++..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccCCC
Q 011491 473 DSTYLRGYPL 482 (484)
Q Consensus 473 ~~~~l~~~~~ 482 (484)
.++||+.||.
T Consensus 161 ~~~~l~~~~~ 170 (174)
T CHL00100 161 NTEYLRYISE 170 (174)
T ss_pred hHHHHHhhhh
Confidence 8899998873
No 2
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=3.2e-53 Score=392.52 Aligned_cols=159 Identities=49% Similarity=0.765 Sum_probs=156.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCch
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~ 392 (484)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++||++.++|++|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCC
Q 011491 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESG 471 (484)
Q Consensus 393 ~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~ 471 (484)
+|+|||+||||++++.+|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||+.
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=1.2e-52 Score=387.26 Aligned_cols=157 Identities=47% Similarity=0.761 Sum_probs=154.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchh
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~ 393 (484)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++|+++.++||.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCC
Q 011491 394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES 470 (484)
Q Consensus 394 V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~ 470 (484)
++||||||||++++++|.+|++++++|||+|||++++++++|+||+++|+|+|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 4
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=387.51 Aligned_cols=160 Identities=52% Similarity=0.792 Sum_probs=157.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
+|+|+|+++|+|+||+|+||+|+|+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCC
Q 011491 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESG 471 (484)
Q Consensus 392 ~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~ 471 (484)
++++|||+|+||++++..|.|+.+++++|||+|+||+++++++|+||+++|++||+++|+||||+|++|||.+||.||++
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999975
No 5
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=1e-51 Score=382.48 Aligned_cols=157 Identities=52% Similarity=0.827 Sum_probs=153.2
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~ 155 (484)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||+++||++.++|++|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 5899999999999999999999999999999999999987764 99999999999999999999999999999999999
Q ss_pred hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (484)
Q Consensus 156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~ 234 (484)
+|+|||+||||++++.+|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999964
No 6
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=3.4e-51 Score=377.62 Aligned_cols=155 Identities=52% Similarity=0.801 Sum_probs=151.4
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||++++|++.++|+.|||+||+||++|.+++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 599999999999999999999999999999999999987764 999999999999999999999999999999999999
Q ss_pred hhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 011491 157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK 233 (484)
Q Consensus 157 V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~ 233 (484)
|+||||||||++++++|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 7
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=2e-51 Score=384.76 Aligned_cols=167 Identities=59% Similarity=0.877 Sum_probs=159.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~ 155 (484)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++. |||++.++++.++||.+||+||+||++|+++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 5899999999999999999999999999999999999999875 99999999888999999999999999999999999
Q ss_pred hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 011491 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235 (484)
Q Consensus 156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~~ 235 (484)
+|+||||||||++++++|.||++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||+..
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccccccc
Q 011491 236 DTAPFWNFS 244 (484)
Q Consensus 236 ~~~~~~~~~ 244 (484)
...++.++|
T Consensus 161 ~~~~l~~~~ 169 (174)
T CHL00100 161 NTEYLRYIS 169 (174)
T ss_pred hHHHHHhhh
Confidence 665554433
No 8
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=377.88 Aligned_cols=159 Identities=50% Similarity=0.776 Sum_probs=155.4
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
+|+|+++++++|+||+|+||+|||+||||||+||+|++||+++ +|||++.||+..+||+.|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 6899999999999999999999999999999999999999996 59999999999999999999999999999999999
Q ss_pred hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (484)
Q Consensus 155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~ 234 (484)
++++|||+|+||++++..|.|+.+++++|||+|||++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+.
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 011491 235 G 235 (484)
Q Consensus 235 ~ 235 (484)
.
T Consensus 162 ~ 162 (163)
T COG0440 162 K 162 (163)
T ss_pred C
Confidence 4
No 9
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-51 Score=400.43 Aligned_cols=236 Identities=51% Similarity=0.734 Sum_probs=219.9
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
....++|+|+++|+|+||||+||+|+|+|||||||||.||.||+++. ||||+.|+|..++|.++||+||++|++|.|+
T Consensus 72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy 151 (309)
T KOG2663|consen 72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY 151 (309)
T ss_pred cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence 46889999999999999999999999999999999999999999975 8999999999999999999999999999999
Q ss_pred CCchhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 011491 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (484)
Q Consensus 152 t~~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~R 231 (484)
+.+++|+|||||+||+ +...+.|+| ||..++++++|+|||++ ++...|++|+|.|++|||. |+.|
T Consensus 152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr 216 (309)
T KOG2663|consen 152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR 216 (309)
T ss_pred CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence 9999999999999998 899999999 99999999999999999 8889999999999999999 9999
Q ss_pred CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCCCC
Q 011491 232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG 311 (484)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (484)
.+++..+++|+|+++.||++.+..+...+.+.. +.+|||||++|.-++ +| +++++.+|
T Consensus 217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp---------~g-vle~~rSG 274 (309)
T KOG2663|consen 217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDP---------KG-VLEEDRSG 274 (309)
T ss_pred HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCc---------cc-chhhcccc
Confidence 999999999999999999999888877755432 678999999997433 22 66889999
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (484)
++.||++.++.|-| ++++|+.|.++++|||.+.+|
T Consensus 275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg 309 (309)
T KOG2663|consen 275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG 309 (309)
T ss_pred hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence 99999999999999 899999999999999988765
No 10
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-35 Score=286.28 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=150.9
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
+..++|+|+++|.|.|||||||+|+|+|||||||||.||-+|++.++|||||+.|+|+.++|.+.||+||++|++|.|++
T Consensus 73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt 152 (309)
T KOG2663|consen 73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYT 152 (309)
T ss_pred ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhheeEEecCc-------------------------------------------------cchHHHHHHHHHc
Q 011491 390 HLPFAERELILIKIAVNT-------------------------------------------------AARRDVLDIAKIF 420 (484)
Q Consensus 390 ~~~~V~REL~LIKV~~~~-------------------------------------------------~~r~eI~~la~if 420 (484)
.++.|+|||||+||..-. .+-..|.++...|
T Consensus 153 ~e~~VeRELmlakvsllg~d~Fravd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~takallrlk~~~la~i~rlta~f 232 (309)
T KOG2663|consen 153 NEPIVERELMLAKVSLLGVDYFRAVDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAKALLRLKMGHLAPIWRLTAAF 232 (309)
T ss_pred CChHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhccCchHHHhhHHHhccchhhccHHHHHHHhhhccchHHHHhhhh
Confidence 999999999999986311 0012366788899
Q ss_pred CcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCCc
Q 011491 421 RARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 472 (484)
Q Consensus 421 rakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~~ 472 (484)
.++++|++++++++|+|..+..+..|+.+++|||++|..|||..|+.|...+
T Consensus 233 ~grvvdis~~s~i~elta~p~rV~~fl~l~dp~gvle~~rSGl~a~trspl~ 284 (309)
T KOG2663|consen 233 YGRVVDISETSCIVELTAKPGRVYPFLPLVDPKGVLEEDRSGLRAHTRSPLV 284 (309)
T ss_pred ccchhccccceeeeeeccCCCcccccccccCcccchhhcccchhhccccccc
Confidence 9999999999999999999999999999999999999999999999998654
No 11
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.97 E-value=1e-31 Score=230.44 Aligned_cols=90 Identities=23% Similarity=0.377 Sum_probs=85.8
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
+..+.+|+||++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||+|||+||+||++|.++
T Consensus 3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence 4457789999999999999999999999999999999999999999999999999 568999999999999999999999
Q ss_pred CCchhHHHhhh
Q 011491 389 THLPFAERELI 399 (484)
Q Consensus 389 t~~~~V~REL~ 399 (484)
++++.+++|+.
T Consensus 82 ~~~~~v~~e~~ 92 (96)
T PRK08178 82 QSDPTMFNKIA 92 (96)
T ss_pred CCchhHHHHHH
Confidence 99999999985
No 12
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.97 E-value=1.5e-31 Score=224.40 Aligned_cols=80 Identities=28% Similarity=0.395 Sum_probs=76.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe--ccC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT 389 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~--dlt 389 (484)
|+|+||++|+|+||||+||+++|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 589999999999999999999999999999999999999999999999998 99999999999999999999999 777
Q ss_pred Cch
Q 011491 390 HLP 392 (484)
Q Consensus 390 ~~~ 392 (484)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 654
No 13
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.96 E-value=4.2e-30 Score=212.25 Aligned_cols=76 Identities=34% Similarity=0.568 Sum_probs=74.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
|+|+|+++|+|+||||+||+++|+||||||+||++|++|++++|||||++.|+++.++||+|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999875
No 14
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.96 E-value=4.2e-29 Score=214.33 Aligned_cols=85 Identities=24% Similarity=0.448 Sum_probs=81.0
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++ +|||++. ++..++||+|||+||+||++|.+++++
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~~ 84 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQSD 84 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCCc
Confidence 6789999999999999999999999999999999999999997 5999998 578999999999999999999999999
Q ss_pred hhhhhhhe
Q 011491 155 PHVERELM 162 (484)
Q Consensus 155 ~~V~RELa 162 (484)
+.|++|+.
T Consensus 85 ~~v~~e~~ 92 (96)
T PRK08178 85 PTMFNKIA 92 (96)
T ss_pred hhHHHHHH
Confidence 99999984
No 15
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.96 E-value=5.4e-29 Score=209.07 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=73.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhHHHHHHHHHhcCcceeEEE--ecC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS 152 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gde~~veQI~kQL~KLidVikV~--dlt 152 (484)
|+|+||++|+|+||||+||+|+|+||||||+||+||+|++|+ +|||+++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 589999999999999999999999999999999999999998 5999998 99999999999999999999999 777
Q ss_pred Cch
Q 011491 153 NEP 155 (484)
Q Consensus 153 ~~~ 155 (484)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 643
No 16
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.95 E-value=4e-28 Score=200.41 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=72.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
||+|+|+++|+|+||||+||+|||+||||||+||++|+|+++++||||+++. +++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 6899999999999999999999999999999999999999999999999995 89999999999999999999974
No 17
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.95 E-value=1.2e-27 Score=197.73 Aligned_cols=74 Identities=34% Similarity=0.558 Sum_probs=71.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
|+|+|+++|+|+||||+||+|+|+||||||+||++|++++++ +|||++.|+++.++||.|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 589999999999999999999999999999999999999997 49999999999999999999999999999985
No 18
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.93 E-value=6.5e-26 Score=187.30 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=69.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++. |||++ ++++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 68999999999999999999999999999999999999999974 99999 489999999999999999999974
No 19
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.92 E-value=1.8e-25 Score=183.44 Aligned_cols=75 Identities=47% Similarity=0.753 Sum_probs=70.8
Q ss_pred hhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 011491 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (484)
Q Consensus 158 ~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg 232 (484)
+||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 699999999998899999999999999999999999999999999999999999999999999999999999997
No 20
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.92 E-value=2.8e-25 Score=182.33 Aligned_cols=75 Identities=55% Similarity=0.832 Sum_probs=70.6
Q ss_pred HHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecC
Q 011491 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRE 469 (484)
Q Consensus 395 ~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg 469 (484)
+||||||||+++..+|.+|++|++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 589999999998899999999999999999999999999999999999999999999999999999999999997
No 21
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.88 E-value=8.2e-23 Score=162.41 Aligned_cols=63 Identities=59% Similarity=0.920 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V 385 (484)
|+||+|+||+++|+||||||+||+++++++++++||||++.|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999999999999999999999999999999999987
No 22
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.83 E-value=9.1e-21 Score=150.72 Aligned_cols=61 Identities=56% Similarity=0.950 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV 148 (484)
|+||+|+||+++|+||||||+||+++++++++. |||++.|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999985 9999999999999999999999999987
No 23
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=99.08 E-value=3.5e-10 Score=94.85 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=72.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
||+|.|.+.+..+||.|.||.++-++|||-+.++++++..+.+.-.|.++|+++ +.++-|..||+||.||..|+..-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence 789999999999999999999999999999999999999999999999999965 89999999999999999997544
No 24
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.90 E-value=4.5e-09 Score=88.31 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=68.9
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
||+|.+.+.+..+||.|.||.++-++|||-+.+++....-|.+. +.++|++ ++.++-|..||+||.||..|+-.-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence 78999999999999999999999999999999999998877776 8889987 568999999999999999998543
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.83 E-value=1.6e-08 Score=77.36 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=58.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID 381 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLid 381 (484)
|+|.+.+.|+||+|.+|+.+|+++|+||.++....+.+. ...+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999998876 555666666788899999999998764
No 26
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.81 E-value=4e-08 Score=75.25 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=63.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V 385 (484)
|+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 79999999999999999999999999999999876535677888888874338899999999999999987
No 27
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.75 E-value=4.4e-08 Score=74.93 Aligned_cols=65 Identities=28% Similarity=0.460 Sum_probs=56.3
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhcCcc
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVN 144 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~KLid 144 (484)
|+|.+.+.|+||+|.+|+.+|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999988774 34555566678889999999988753
No 28
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.67 E-value=2.7e-07 Score=74.83 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=63.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~ 386 (484)
.-+.+|.|...|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+-+.+++++++|+++-+|.+|+
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 3467899999999999999999999999999999999976577888888876 57889999999999999999986
No 29
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.61 E-value=1.8e-07 Score=71.18 Aligned_cols=71 Identities=25% Similarity=0.417 Sum_probs=62.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
+|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++.. ..++++++|+++-+|.+|..+
T Consensus 1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 36789999999999999999999999999999876656889999998643 588999999999999999764
No 30
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.59 E-value=3.9e-07 Score=69.72 Aligned_cols=69 Identities=59% Similarity=0.947 Sum_probs=58.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV 148 (484)
|+|.+.+.|+||+|.+|+.+|+..|+||.++........+ .+.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 7899999999999999999999999999999987642233 36666653337899999999999999987
No 31
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.58 E-value=1.5e-07 Score=99.31 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=67.1
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
..+|.|++.++|+||||.+|+++|+++|+||+|+...+.+. +.++++|+++ .++..++++++||+||.+|.+.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 45799999999999999999999999999999999987654 8899999998 8899999999999999998764
No 32
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.53 E-value=3.7e-07 Score=71.06 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=62.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
|.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++-+|..+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 5789999999999999999999999999999886655458888888776 5778899999999999888765
No 33
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.49 E-value=5.4e-07 Score=68.96 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=62.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++. .+++++++|+++-+|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 57899999999999999999999999999998765556778888888765 788999999999999998753
No 34
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=1.1e-06 Score=69.25 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=40.2
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV 125 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV 125 (484)
+.|++.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence 4688999999999999999999999999999998877765566655
No 35
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.43 E-value=1.2e-06 Score=68.96 Aligned_cols=45 Identities=31% Similarity=0.555 Sum_probs=39.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEE
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCIT 359 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiT 359 (484)
+.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence 468889999999999999999999999999999887776555553
No 36
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.40 E-value=1e-06 Score=67.04 Aligned_cols=68 Identities=26% Similarity=0.465 Sum_probs=58.0
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
|.+.+.|+||+|++|+.+|+.+|+||.++.+...+ +...+++.++.. .+++++++|.++-+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 67899999999999999999999999999998765 233477777543 588999999999999999864
No 37
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.40 E-value=7.5e-07 Score=94.03 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=65.4
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEE
Q 011491 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV 148 (484)
.+...+|.|++.++|+||||++|+++|+++|+||+|+...++++. ..++|+++ .++..++++++||+||.+|.+.
T Consensus 343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 445678999999999999999999999999999999998876442 45888887 7889999999999999998654
No 38
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.40 E-value=3e-06 Score=68.76 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=57.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gde~~veQI~kQL~KLidVikV~ 149 (484)
-.-.|.|.+.|+||+|+.|+.+++..|.||.++++....+.+ .+++.+. .|-+.+++++++|+++-+|.+|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 356899999999999999999999999999999999874333 3444433 46789999999999999999986
No 39
>PRK08577 hypothetical protein; Provisional
Probab=98.37 E-value=3.3e-06 Score=76.06 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=66.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl 388 (484)
..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+..++++++. ..+..+++++++|+++-+|.+|...
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 469999999999999999999999999999999987766677787877766 3336899999999999999999754
No 40
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=3e-06 Score=65.94 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=58.0
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~-gde~~veQI~kQL~KLidVikV~ 149 (484)
|.|.+.+.|+||+|++++.+|++.|.||+++...+..+. ..+.+++. .+...+++++++|.++-+|.++.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 578999999999999999999999999999988654332 34666654 56888999999999998887653
No 41
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.29 E-value=6.7e-06 Score=65.12 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=59.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChH-HHHHHHHHHhcccceEEEecc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~-~ieql~kQL~KLidVi~V~dl 388 (484)
+|.+...|+||+|.+|++++++.|.||.+++... ...+..++.+++. .+.+ .+++|+++|.++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5889999999999999999999999999997743 2246667777765 3444 899999999999999999753
No 42
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=6.5e-06 Score=63.26 Aligned_cols=70 Identities=34% Similarity=0.424 Sum_probs=61.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
.|.+.+.|+||+|++++.+|+..|+||.++...+. ..+..++++.+++. +.++.++++|++.-+|..|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 36788999999999999999999999999988654 35778899999876 788899999999999998864
No 43
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=3.5e-06 Score=64.46 Aligned_cols=69 Identities=29% Similarity=0.405 Sum_probs=57.8
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
+|.+.+.|+||+|.+++.+|+..|+||.++.+.+... .+.+.+.+++. .+++++++|.++-.|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 4789999999999999999999999999999876432 23466777654 788999999999999998753
No 44
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.25 E-value=1.7e-06 Score=67.39 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=56.9
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
|.+..+|+||+|++|+.++++.|+||.+++...+...+.+.+.++.. .+++++++|.++-+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999886654444566666553 888999999999999999754
No 45
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.23 E-value=2.3e-06 Score=66.59 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=56.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
|-+..+|+||+|++|+.++++.|+||.++...... +...+.+.+... .+++++++|.++-+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876543 566666666644 788999999999999999754
No 46
>PRK08577 hypothetical protein; Provisional
Probab=98.18 E-value=1.3e-05 Score=72.18 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=61.9
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChhHHHHHHHHHhcCcceeEEEec
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~--gde~~veQI~kQL~KLidVikV~dl 151 (484)
-..+.|.+.+.|+||+|+.|+.+|+..|+||.++++......+ .+++++. ..+..+++++++|.++-+|..|...
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 3578999999999999999999999999999999987654333 3555444 4346799999999999999999853
No 47
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.18 E-value=5.4e-06 Score=64.87 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=60.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
+.+.+.|+||+|++|+.+|+++|.||.++.+.+....+.+.+.+.++++ ....+.+.|.++-+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 4568899999999999999999999999998887667888888888864 3458888999999999887653
No 48
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.16 E-value=6.8e-05 Score=72.07 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=50.9
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHh
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~ 140 (484)
+++...|+++=.||||..++|+.+++..|.||...+...-...--|.+.+.+....+.++...|.
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~ 69 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLP 69 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHH
Confidence 44678999999999999999999999999999988877665543355566776666666655553
No 49
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.14 E-value=1.8e-05 Score=63.80 Aligned_cols=70 Identities=11% Similarity=0.284 Sum_probs=60.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
.|.|...|++|+|+.|+.+++..|+||.++.+... +.-++++.+. +-+.+++++++|.++-+|.+|+-+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998653 4456666666 6678999999999999999998654
No 50
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=1.7e-05 Score=62.76 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=59.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~ 384 (484)
+|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++-+|.-
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 47899999999999999999999999999998654 368888888877 577899999999999999874
No 51
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=2.1e-05 Score=60.43 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=58.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
.|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.++++|++.-+|..|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 478899999999999999999999999999876543 233477778775 688899999999999998864
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=1.9e-05 Score=62.55 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=56.9
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
.|.+.+.|+||+|++|+..+++.|.||.+++..... .... +++.+.+-+..+++++++|.++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 588999999999999999999999999999874322 1122 4444544445999999999999999999754
No 53
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.09 E-value=3.5e-05 Score=56.62 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=58.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~ 386 (484)
|.+.+.|+||.+++++.+|+..++||.++...... .+...+.+++. .+...++.++++|.++..|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999887654 56677777765 46678999999999999998875
No 54
>PRK00194 hypothetical protein; Validated
Probab=98.07 E-value=6.5e-06 Score=68.33 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=55.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhcccceEEEe
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd--e~~ieql~kQL~KLidVi~V~ 386 (484)
|++|++++.-.|+||++++|+++|+.+|.||..+..... .+.--+.++++.. +..++.+.+.|+++-+...+.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 568999999999999999999999999999999987764 3444454454433 234677777777777665554
No 55
>PRK00194 hypothetical protein; Validated
Probab=98.03 E-value=8.6e-06 Score=67.58 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=56.4
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHHhcCcceeEEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL~KLidVikV~ 149 (484)
|++|++++.-.|+||++++|+++|+.+|.||..++.......-.++++++.+. ..++.+.+.|+++-+...++
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 56899999999999999999999999999999998765322223555666443 34678888888877766555
No 56
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.01 E-value=1.9e-05 Score=61.83 Aligned_cols=69 Identities=23% Similarity=0.437 Sum_probs=55.4
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
+-+...|+||+|++|+.+|+++|.||.++.+.+....+ .+.+.++++ ....+.+.|.++-+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 45689999999999999999999999999987764333 366667653 3458888999999999887653
No 57
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=2.9e-05 Score=61.01 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=52.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
.+++.++|+||.|.+++.+|+++|+||+++...+...++...+.|.+.+++. +++.+.|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHHC
Confidence 5788999999999999999999999999999888767888889999886543 4666666653
No 58
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=98.01 E-value=1.6e-05 Score=60.27 Aligned_cols=46 Identities=22% Similarity=0.516 Sum_probs=39.8
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG 127 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g 127 (484)
|++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+.+.+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46899999999999999999999999999999886 44557777764
No 59
>PRK04435 hypothetical protein; Provisional
Probab=97.98 E-value=7.1e-05 Score=68.93 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=64.8
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl 388 (484)
.=+.-+|.+.+.|+||+|++|+.++++.|.||.+++... ...+...+++++. ..+..+++|+.+|+++-.|.+|+-+
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~ 144 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELI 144 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEE
Confidence 335689999999999999999999999999999998743 2356777777776 3334899999999999999999865
Q ss_pred C
Q 011491 389 T 389 (484)
Q Consensus 389 t 389 (484)
.
T Consensus 145 ~ 145 (147)
T PRK04435 145 G 145 (147)
T ss_pred e
Confidence 4
No 60
>PRK04435 hypothetical protein; Provisional
Probab=97.97 E-value=5.2e-05 Score=69.82 Aligned_cols=74 Identities=30% Similarity=0.403 Sum_probs=59.7
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe--CChhHHHHHHHHHhcCcceeEEEecC
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~--gde~~veQI~kQL~KLidVikV~dlt 152 (484)
.-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++. ..+..+++|+.+|+++-.|.+|+-+.
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4589999999999999999999999999999987533222 23555444 44458999999999999999998654
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.93 E-value=6.3e-05 Score=60.60 Aligned_cols=70 Identities=9% Similarity=0.268 Sum_probs=58.4
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
.|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +...+++++++|.++-.|.+|..+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999998653 2212555554 5678999999999999999998653
No 62
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.90 E-value=3.2e-05 Score=58.62 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=39.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~ 363 (484)
|++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 46789999999999999999999999999999886 45555555555
No 63
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.90 E-value=6.4e-05 Score=52.29 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=50.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL 376 (484)
|++...|+||++.++++.|+++|+||.++........+..++++.+...+ .++.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46788999999999999999999999999998776677788888888654 777777776
No 64
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.89 E-value=8.7e-05 Score=59.60 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=55.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccce
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidV 382 (484)
+.+.++|+||.|.+|..+|+++|.||.+|.--|... ++-..+.|-+.| ++..++++++.|++..+-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~ 70 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED 70 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence 567779999999999999999999999997777665 666677777788 578899999999986553
No 65
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.88 E-value=5.7e-05 Score=57.84 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=52.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~gd-e~~ieql~kQL~KL 379 (484)
|.+.+.|+||.|.+|+.+++..|.||.++...+.. ..+...+.+.+... .+.++++++.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999987754 35777888887754 47788999998764
No 66
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.87 E-value=4.3e-05 Score=69.29 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=80.8
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
|+-.+||+++||+||-|..++..++..|+||..++.+.|.+.|++.++|+.++. ..++.+. ..+
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-A~~~Lee---------------~gF 64 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-AHSVLEE---------------AGF 64 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-HHHHHHH---------------CCc
Confidence 456789999999999999999999999999999999999999999999986554 3333322 222
Q ss_pred hhhhheeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEe--------CChhHHHHHHHHhccCCcE
Q 011491 157 VERELMLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVT--------GDPGKMVAVQRNLSKFGIK 219 (484)
Q Consensus 157 V~RELaLiKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~T--------G~~~KIdafi~~L~~fGIl 219 (484)
+-|+--.+-|..+ |..- -.|++.++.. |++-+++--=++ =..+.+|+.++.|++-||.
T Consensus 65 ~Vr~~dVlaVEmeD~PG~l---~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~ 132 (142)
T COG4747 65 TVRETDVLAVEMEDVPGGL---SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK 132 (142)
T ss_pred EEEeeeEEEEEecCCCCcH---HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence 3333333333333 3333 3344444432 222233221111 1346789999999999975
No 67
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=9.5e-05 Score=58.48 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=55.0
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeE
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK 147 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVik 147 (484)
+|.+.+.|+||.|++|+.+++..|.||.++...... .+. +.+++. .+...++++++.|+++-+|.-
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 478999999999999999999999999999987653 333 555555 467889999999999998764
No 68
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.84 E-value=5.9e-05 Score=60.81 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=49.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeCCh-HHHHHHHHHHhcc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTD-ESIGKLVQLLHKL 379 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te----~~~iSRiTIVV~gde-~~ieql~kQL~KL 379 (484)
+++...|+||++++|+.+|+++|.||.++.....+ ..+.-.|++.++..+ ..+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999986655 336666677766443 2467777766654
No 69
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.84 E-value=0.00014 Score=53.44 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=55.5
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV~ 149 (484)
|.+.+.|+||.+++++.+|+..++||.++........ ..+.+.+. .+...++.++++|.++-.|.+|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 4678999999999999999999999999998765422 33555554 45678999999999999998875
No 70
>PRK07431 aspartate kinase; Provisional
Probab=97.82 E-value=0.0057 Score=67.20 Aligned_cols=287 Identities=13% Similarity=0.136 Sum_probs=177.0
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhhee
Q 011491 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML 163 (484)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaL 163 (484)
-+.++||.++||.+.|.+.|.||+.++.+..+.. .-+.++++.++ +++..+.|+++.+=++. .+-.+.+++++
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~ 350 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK 350 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence 3568899999999999999999999987765432 23677775432 44444444433210100 11225678999
Q ss_pred EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceeeecCcCCCC
Q 011491 164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIALRREKLGDT 237 (484)
Q Consensus 164 iKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlE~aRTG~iAl~Rg~~~~~ 237 (484)
|.|--.. .--..+++....++.+|.-++....-|-+.=+.+..+..++.|.. |. +.+......
T Consensus 351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~-----------~~~~~~~~~ 419 (587)
T PRK07431 351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFE-----------LEDSQIEIN 419 (587)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhc-----------cCCcccccC
Confidence 9887643 233467888888888898887665666666666667777777653 32 111100000
Q ss_pred cccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCCCCceEEEE
Q 011491 238 APFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTL 317 (484)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~htL 317 (484)
+-.|+ ..+.-|-.+--. .++..-+|
T Consensus 420 ~~~~~----------------------------------~~~~~v~gIa~~---------------------~~~~~i~l 444 (587)
T PRK07431 420 PTASG----------------------------------QDEPEVRGVALD---------------------RNQAQLAI 444 (587)
T ss_pred ccccC----------------------------------CCCCcEEEEEcc---------------------CCEEEEEE
Confidence 00000 000001111111 12222333
Q ss_pred EEEEeCchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEeccCCchhHH
Q 011491 318 SMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (484)
Q Consensus 318 silVeN~pGVL~RVtglFsRRGyNIeSLtVg~t-e~~~iSRiTIVV~gd-e~~ieql~kQL~KLidVi~V~dlt~~~~V~ 395 (484)
. .+.++||.+.++.+.+.++|.||+.++.... +..+.-.++++++-+ -..+.++.++|.+..+...+ .+.
T Consensus 445 ~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~ 516 (587)
T PRK07431 445 R-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDG 516 (587)
T ss_pred C-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEe
Confidence 2 4568899999999999999999999987643 334566788888843 23456666666655444333 234
Q ss_pred HhhheeEEecCcc-c----hHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 396 RELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 396 REL~LIKV~~~~~-~----r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+.+++|-|--..- . -..+++.....+.++.-++...+-|-+.=+.+..+..++.|.
T Consensus 517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh 577 (587)
T PRK07431 517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVH 577 (587)
T ss_pred CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHH
Confidence 5677877754322 2 247888888999999999988788877777777777776664
No 71
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=8.6e-05 Score=58.23 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=47.9
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
|.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.+++..+ +..+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence 689999999999999999999999999999987765322223455666643 356677776654
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.81 E-value=0.00018 Score=58.72 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=53.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid 381 (484)
.+|.+.+.|+||.|.+|..+|+++|+||.|+..-|..+ .....+-+-+.|. ++.+.+++++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 46788889999999999999999999999999888754 3444444445564 6788899999988544
No 73
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.78 E-value=0.00011 Score=57.62 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.6
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gde~~veQI~kQL~K 141 (484)
|.+++.+.|+||.|.+++++|+..|+||.++...... ..+.+.+++..++ ..+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 6899999999999999999999999999999877653 2456777777443 56677766654
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.77 E-value=0.00019 Score=58.58 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=51.7
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEE--EEEeCC--hhHHHHHHHHHhcCcc
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFT--IVVSGT--ERVLRQVVEQLNKLVN 144 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iT--IVV~gd--e~~veQI~kQL~KLid 144 (484)
..|.+.+.|+||.|.+|..+|++.|+||.|+..-+..+. ..++ +-+++. +..+++++++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 367888899999999999999999999999998887653 3344 445554 6778889999987544
No 75
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00015 Score=57.81 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=50.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccce
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gde~~ieql~kQL~KLidV 382 (484)
|++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|++-.+|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence 68899999999999999999999999999887652 344444444443 2334588888888776444
No 76
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=5.1e-05 Score=63.07 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=54.5
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcccceEEE
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~KLidVi~V 385 (484)
++.+++...|+||++++|+++|+.+|.||..+..... .+.-.|.+++.... ..++++.+.|++|-+-..+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l 72 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999987763 34455555555443 4588888888877655443
No 77
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=6.1e-05 Score=62.60 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=54.9
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcCcceeEEE
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KLidVikV~ 149 (484)
++.+++...|+||++++|++.|+++|.||..+..... .+. +++++.... ..++++.+.|++|-+-..++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 5789999999999999999999999999999987753 333 666776543 45888998888877554443
No 78
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.70 E-value=0.00024 Score=57.09 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=52.1
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChhHHHHHHHHHhcCcce
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVNV 145 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~g--de~~veQI~kQL~KLidV 145 (484)
+.+.++|+||.|++|...|+++|+||.+|.--|... ++. +-|-+.| ++..++++++.|.+..+-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~ 70 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED 70 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence 567789999999999999999999999997777655 333 5566677 578899999999886553
No 79
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.68 E-value=0.00015 Score=55.39 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=41.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (484)
+.+.+.|+||.|.+++++|++.|+||.++...+....+..++.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 678999999999999999999999999998876655677788888875
No 80
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.68 E-value=0.00015 Score=58.52 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=47.6
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-hHHHHHHHHHhcC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL 142 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted----~~~--iTIVV~gde-~~veQI~kQL~KL 142 (484)
+++...|+||.+++|+.+|+++|.||.++.....+. .++ |++.++..+ ..+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999865542 243 566666543 3577777777655
No 81
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.64 E-value=0.00022 Score=56.01 Aligned_cols=59 Identities=31% Similarity=0.454 Sum_probs=46.2
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~K 141 (484)
.+++.++|+||.|.+++.+|+++|+||+++...+....+ .+.+.+.+++ .+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence 578999999999999999999999999999887764444 3677776544 2366666654
No 82
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.59 E-value=0.00036 Score=55.61 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=47.3
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeec--CC-CcE--EEEEEeCChhHHHHHHHHHhcCcce
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VD-KAL--FTIVVSGTERVLRQVVEQLNKLVNV 145 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed-~~~--iTIVV~gde~~veQI~kQL~KLidV 145 (484)
+++.+.|+||.|.+++.++++.|.||.|+..... +. ... +++.+.. +..++.|.+.|.+-.+|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccE
Confidence 6889999999999999999999999999988765 22 223 3443433 33488888888776444
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00033 Score=53.60 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=47.3
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChhHHHHHHHHHhcC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL 142 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~~--iTIVV~g-de~~veQI~kQL~KL 142 (484)
|.+.+.|+||.|.+|+.+++..|.||.++...+..+ .+. +.+.+.. +...++++++.|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999999999876532 332 5555543 346788999988764
No 84
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.52 E-value=0.00056 Score=77.15 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=73.5
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql 372 (484)
..+++.+|+. +..+.-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++... .+.+...+.+.+. .+-+.+++|
T Consensus 610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i 684 (702)
T PRK11092 610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANI 684 (702)
T ss_pred ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 222233569999999999999999999999999999999753 4456777776665 577899999
Q ss_pred HHHHhcccceEEEecc
Q 011491 373 VQLLHKLIDLHEVQDI 388 (484)
Q Consensus 373 ~kQL~KLidVi~V~dl 388 (484)
+++|.++-+|.+|.-.
T Consensus 685 ~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 685 MRKIRVMPDVIKVTRN 700 (702)
T ss_pred HHHHhCCCCcceEEEc
Confidence 9999999999999764
No 85
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.50 E-value=0.00058 Score=55.67 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=52.7
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL 142 (484)
...|+++=.|+||++++|++.+++.|.||..+.....++.-.+.+.+++++..++++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 4689999999999999999999999999999998877654347777888888899999999876
No 86
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00029 Score=56.49 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=48.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL 379 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~KL 379 (484)
+|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+. -.++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478899999999999999999999999999877533445555555555443 2577777777665
No 87
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.46 E-value=0.00064 Score=47.14 Aligned_cols=57 Identities=30% Similarity=0.425 Sum_probs=45.4
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHH
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL 139 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL 139 (484)
|++...|+||.+.++++.|+++|+||.++........+ .+++.+...+ .++.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46888999999999999999999999999987764343 3667776544 677777765
No 88
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.00039 Score=55.77 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=47.9
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcC
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL 142 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KL 142 (484)
+|++...|+||++++|++.|+.+|+||..+........+. |.+.+..+. ..++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999998765334444 555555553 2578888877665
No 89
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.00095 Score=53.73 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=47.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK 378 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~K 378 (484)
..+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-+--.-.+.+. +++..+++.+.|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 36889999999999999999999999999998877755544443333332 34456667666654
No 90
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.00056 Score=52.26 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=37.7
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG 127 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g 127 (484)
+.+.+.|+||.|++++++|++.|+||.++...+....+ .+.+.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 68899999999999999999999999999876654333 35666654
No 91
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.42 E-value=0.00096 Score=51.43 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=40.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde 129 (484)
.|.|.+.|+||+|++++++|+..|+||.++.+...++....++.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5789999999999999999999999999999887665334566665433
No 92
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.00045 Score=55.90 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=48.2
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-HHHHHHHHHhcCcc
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN 144 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~-~veQI~kQL~KLid 144 (484)
+++.-.|+||.+++|++.|+.+|.||..++.......=.+.+.+..++. .++++.+.|+++-+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6888999999999999999999999999975544322125666665543 67888888877643
No 93
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.00042 Score=56.03 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=49.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-HHHHHHHHHhccc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI 380 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~-~ieql~kQL~KLi 380 (484)
+++.-.|+||++++|+++|+.+|.||..+...... +.-.+.+.+...+. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999755543 45667777776544 6788888777664
No 94
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.36 E-value=0.0009 Score=61.76 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=63.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl 388 (484)
+.+||++.++|+.|.|+++..+.++++.||-+++..-. -.|-..+|+.++ +-+..++.|+..|.|+-.|.+|+-+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv 147 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV 147 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence 56899999999999999999999999999988776532 245566666665 7788999999999999999999854
No 95
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.35 E-value=0.0015 Score=50.35 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=40.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD 366 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde 366 (484)
.|.|.+.|+||+|.+++++|+..|.||.++.+...++ ....++.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCC
Confidence 5789999999999999999999999999999877654 455666665433
No 96
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.34 E-value=0.0012 Score=75.05 Aligned_cols=91 Identities=20% Similarity=0.356 Sum_probs=74.5
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql 372 (484)
+.+++..|+. +....-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+...|++++. .+-+.+.++
T Consensus 650 eR~I~V~W~~----~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l 725 (743)
T PRK10872 650 ERIVDAVWGE----SYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV 725 (743)
T ss_pred ceEEEeEecC----CCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence 3578999972 11223356899999999999999999999999999999986544367777777776 577899999
Q ss_pred HHHHhcccceEEEecc
Q 011491 373 VQLLHKLIDLHEVQDI 388 (484)
Q Consensus 373 ~kQL~KLidVi~V~dl 388 (484)
+++|.++-+|.+|.-.
T Consensus 726 ~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 726 LGKLNQVPDVIDARRL 741 (743)
T ss_pred HHHHhcCCCcCeEEec
Confidence 9999999999999764
No 97
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=97.31 E-value=0.0014 Score=73.84 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491 294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql 372 (484)
..+++..|+. +....-..+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+++. .+-+.+..|
T Consensus 594 er~I~v~W~~----~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i 668 (683)
T TIGR00691 594 EKIIEVEWNA----SKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI 668 (683)
T ss_pred ccEEEEEecC----CCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 2222346699999999999999999999999999999999654 457777777765 588899999
Q ss_pred HHHHhcccceEEEe
Q 011491 373 VQLLHKLIDLHEVQ 386 (484)
Q Consensus 373 ~kQL~KLidVi~V~ 386 (484)
+.+|.++-+|.+|.
T Consensus 669 i~~L~~i~~V~~v~ 682 (683)
T TIGR00691 669 MLKIKTKNDVIVVK 682 (683)
T ss_pred HHHHhCCCCceEEe
Confidence 99999999999885
No 98
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0017 Score=50.59 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=45.5
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g------de~~veQI~kQL~K 141 (484)
.|.|...|+||+|++|+++|+..|+||.++.+....+....++.+.+ +++..+++.+.|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998765543334555532 23455566666654
No 99
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.27 E-value=0.014 Score=67.72 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=49.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe------CChHHHHHHHHHHhcccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID 381 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~------gde~~ieql~kQL~KLid 381 (484)
..+.|...|+||+|.+|+++|++.|+||.+..+.. .....--+-.+.+ .+++..+.|.+.|.+.++
T Consensus 844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999984 4433333333323 234457778888877664
No 100
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.25 E-value=0.0015 Score=60.28 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=62.8
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEE--eCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV--~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
-+.+||++.++|+.|.|+++....++++.||-+++..- -+...-+||.+ .+-+..++.|+..|.|+-.|.+|+-+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 46789999999999999999999999999998888653 22223366654 467888999999999999999998653
No 101
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.25 E-value=0.0024 Score=52.07 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=52.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
...|++.-.|+||++++|++.+++.|.||..+....... .-.+.+.+.++++..+++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~--~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG--RFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETT--EEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC--eEEEEEEEEeCcccHHHHHHHHHHH
Confidence 468999999999999999999999999999988887653 4567888888888999999999876
No 102
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0017 Score=52.79 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe----C----ChHHHHHHHHHHhcc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP----G----TDESIGKLVQLLHKL 379 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~----g----de~~ieql~kQL~KL 379 (484)
+|+++..|+||+|.+|+++|++.|.||.+-.+... .+..--++.|. | +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999888854 34444455542 2 345677888887764
No 103
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0018 Score=52.55 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=46.4
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChhHHHHHHHHHhcC
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL 142 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~----g----de~~veQI~kQL~KL 142 (484)
+|+|+..|+||+|++|++.|++.|.||.+-.+....+.-.-++.|. + +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999985522222344432 2 345577787777664
No 104
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0024 Score=51.56 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=36.8
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV 125 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV 125 (484)
.+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 578899999999999999999999999999987553322355555
No 105
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0022 Score=52.57 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=47.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK 378 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----e~~ieql~kQL~K 378 (484)
+|.|...|+||+|.++++.|++.|+||.+-.+..+.+.-.-..-.|.+.+ ++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999887666544444444422 2345556666654
No 106
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0031 Score=50.76 Aligned_cols=61 Identities=28% Similarity=0.387 Sum_probs=44.9
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe---C----ChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~---g----de~~veQI~kQL~K 141 (484)
.+.|...|+||+|.+|+++|++.|+||.+..+..+.+.-. =++.|. + +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999877744422 233332 1 34456666666654
No 107
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0044 Score=48.33 Aligned_cols=62 Identities=24% Similarity=0.246 Sum_probs=45.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL 379 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~KL 379 (484)
.|.|...|+||+|.+|+++|+..|.||.++.+....+ ..-.++.+.+ +++..++|.+.|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999876543 4445555531 234555666666543
No 108
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.004 Score=50.21 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=37.8
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP 363 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~ 363 (484)
.+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+ +..-.++.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence 578899999999999999999999999999887553 3455566653
No 109
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.01 E-value=0.0055 Score=49.86 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=55.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KLidVi 383 (484)
+|.+.+.|+||.|.+|...|+.+|+|+..|.--|... ++-..+-|-+.|+++.+++++++|++...=.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~ 70 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADV 70 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeE
Confidence 4556668999999999999999999999999888764 4445566667788888999999998865433
No 110
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.98 E-value=0.0025 Score=52.10 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=46.9
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL 142 (484)
.+|++.-.|+||..++|+++++.+|.||..+..-.....-.|.+.++.+....+++.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence 578999999999999999999999999999988763222225556665544566666655544
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0062 Score=54.40 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V 385 (484)
+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|-+.|+.+.+.+++++|.+...-++|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 678888889999999999999999999999999988743 344556666778777899999999886654333
No 112
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.94 E-value=0.031 Score=64.18 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=49.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C---ChHHHHHHHHHHhc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK 378 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---de~~ieql~kQL~K 378 (484)
...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.++.. | +++..+.|.++|.+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~ 847 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA 847 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998766544444444422 2 34556677766654
No 113
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.94 E-value=0.0056 Score=49.79 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=53.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCChhHHHHHHHHHhcCcceeE
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGTERVLRQVVEQLNKLVNVIK 147 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV~gde~~veQI~kQL~KLidVik 147 (484)
+|.+.+.|+||.|.+|...|+.+|+|+..|---|.... .. +=|-+.|++..+++++++|.+...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 45667789999999999999999999999998886654 22 445566777789999999988654333
No 114
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0043 Score=50.90 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=44.6
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV-~g-----de~~veQI~kQL~K 141 (484)
+|.|+..|+||+|.++++.|++.|+||.+-.+..|.+.-. =++.| +. +++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999987755532 23333 22 22445556665543
No 115
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.0065 Score=49.86 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=37.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEE
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSC 357 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSR 357 (484)
|.+.|+..|+||++.+++|+|++.|+||.+-.+-.+.+.-.--
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LD 44 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALD 44 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEE
Confidence 6889999999999999999999999999998887775544333
No 116
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.84 E-value=0.0024 Score=58.18 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=79.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
|+-..||+++||+||=|..++..+..-|+||..++.+.|.+.||-|| +|+- .+...+..+.-. .+.++
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~-~d~A~~~Lee~g---F~Vr~------ 68 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDR-PDEAHSVLEEAG---FTVRE------ 68 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCC-hHHHHHHHHHCC---cEEEe------
Confidence 34578999999999999999999999999999999999999999776 4553 334444443321 22222
Q ss_pred hhHHHhhheeEEecCccch-HHHHHHHHHcCcEEEEecCCEEEEEEeC--------CHHHHHHHHHHhccCCcE
Q 011491 392 PFAERELILIKIAVNTAAR-RDVLDIAKIFRARAVDVSDHTITLELTG--------DLNKIIALQRLLEPYGIC 456 (484)
Q Consensus 392 ~~V~REL~LIKV~~~~~~r-~eI~~la~ifrakIVDvs~~si~iE~TG--------~~~Kidafi~lL~pyGIl 456 (484)
--.+-|..+ .+ ..+-.|++.++.. |++-+++.-=++- ..+.+|+.++.|+.-||.
T Consensus 69 ------~dVlaVEme--D~PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~ 132 (142)
T COG4747 69 ------TDVLAVEME--DVPGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK 132 (142)
T ss_pred ------eeEEEEEec--CCCCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence 222222221 11 1344455555443 3444444332222 346789999999999975
No 117
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.83 E-value=0.038 Score=63.23 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=34.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeec
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA 350 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~t 350 (484)
...|.|...|+||+|.+|+++|+..|+||.+..+...
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 3689999999999999999999999999999999887
No 118
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.82 E-value=0.0048 Score=59.25 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=68.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchh
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF 393 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~ 393 (484)
..-||+.++|+||||..+||+.+.+|-||.-...--..+....+|-+-+.|- +..+.|+..|+-.-.|++|+.+...+-
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence 3568999999999999999999999999987555444444488888888865 358899999999999999999888766
Q ss_pred HHHh
Q 011491 394 AERE 397 (484)
Q Consensus 394 V~RE 397 (484)
++--
T Consensus 81 iyGK 84 (218)
T COG1707 81 IYGK 84 (218)
T ss_pred HhCc
Confidence 6543
No 119
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.69 E-value=0.0056 Score=62.25 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL~KL 379 (484)
+..|.++.+++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...+++|...|+++
T Consensus 2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l 73 (286)
T PRK13011 2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPI 73 (286)
T ss_pred CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999755555666666666421 22355555554444
No 120
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.69 E-value=0.0048 Score=62.78 Aligned_cols=70 Identities=10% Similarity=0.123 Sum_probs=52.4
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhHHHHHHHHHhcCcc
Q 011491 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNKLVN 144 (484)
Q Consensus 75 ~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-e~~veQI~kQL~KLid 144 (484)
.+|.++.+++.-.|+||+.++||++|+.+|.||+.++...+...+. |.+.+..+ ...++++...|+++-+
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999999874444455 44444422 2346677766665544
No 121
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.66 E-value=0.011 Score=66.96 Aligned_cols=88 Identities=18% Similarity=0.378 Sum_probs=72.8
Q ss_pred ccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHH
Q 011491 295 QVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLV 373 (484)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~ 373 (484)
.+++..|+.-. .+.-...|.|...|++|+|+.|+.++++-+.||.++..... +.+..-|.+.+. .+-..+.+|+
T Consensus 612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~ 686 (701)
T COG0317 612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL 686 (701)
T ss_pred eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence 68888998332 34457899999999999999999999999999999999886 555555555544 3778999999
Q ss_pred HHHhcccceEEEec
Q 011491 374 QLLHKLIDLHEVQD 387 (484)
Q Consensus 374 kQL~KLidVi~V~d 387 (484)
.||..+-+|..|..
T Consensus 687 ~~l~~~~~V~~v~R 700 (701)
T COG0317 687 ARLKQLPDVISVRR 700 (701)
T ss_pred HHHhcCCCeEEEEe
Confidence 99999999999864
No 122
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.011 Score=50.75 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=53.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKLI 380 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~-~iSRiTIVV~gd-e~~ieql~kQL~KLi 380 (484)
.+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=+.|. +..+.+++++|.+-+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 35677777899999999999999999999999999887543 344555556675 777888888888743
No 123
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.66 E-value=0.0064 Score=49.76 Aligned_cols=62 Identities=26% Similarity=0.241 Sum_probs=46.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
..|++.-.|+||+.++|+++++.+|.||..+........-.-||.+.++ ....+++.+.|++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHH
Confidence 5789999999999999999999999999999888754444555555544 3345555544443
No 124
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.61 E-value=0.066 Score=62.16 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=48.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhccc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLI 380 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---de~~ieql~kQL~KLi 380 (484)
...|.|.+.|+||+|.+|+.+|.+-|+||.+--+..-.+. ..-+-.|.+ | +++..+.|.++|..-+
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ger-a~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGER-VEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCce-EEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999888764443 334444433 2 2455666766665544
No 125
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.59 E-value=0.0039 Score=66.06 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=60.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
-.|+|.+.=+|+||++++|+.++++.|+||..+.+....+...+.|-+++ ..-+.++++|+++-+|++|..+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 45899999999999999999999999999999999776644556666664 4466888999999999998754
No 126
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.015 Score=48.20 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=46.2
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHh
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLH 377 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~ 377 (484)
.+|.|...|+||+|.+|+.+|++-|.+|.+-.++.-... ....-.|.+ | |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ger-v~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGW-FMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCe-EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999999999888765543 333333333 2 3456677777663
No 127
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.017 Score=51.64 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=56.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gde~~veQI~kQL~KLidVikV 148 (484)
.+..|.+.+.|+||.|.+|...|+.+|+|+.+|---|+.... + +=|-+.|....+++++++|.+...-++|
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 367888888999999999999999999999999988875442 2 4455667666788899999876654443
No 128
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.53 E-value=0.006 Score=61.96 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=51.2
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChhHHHHHHHHHhcCcc
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN 144 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~g--de~~veQI~kQL~KLid 144 (484)
.|+++.|++.-.|+||..+.|+++++.+|.||+.++.......+. |.+.++. ....++++...|++|-+
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~ 75 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE 75 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999887333344 4444544 12336666666655543
No 129
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.015 Score=48.25 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=46.1
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-C----ChhHHHHHHHHHh
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G----TERVLRQVVEQLN 140 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-g----de~~veQI~kQL~ 140 (484)
.+|.|...|+||+|.+|+..|++-|++|.+-.++.-.+.-. |-+.-. | |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999998876555432 333322 2 3456677777663
No 130
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.52 E-value=0.085 Score=61.35 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=49.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKLI 380 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~KLi 380 (484)
-.|.|...|+||+|.+|+++|++.|.||.+-.+..+ +.-.--.-.|.+ | +++..++|.+.|.+.+
T Consensus 815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999988877 443333333333 2 2345677777776654
No 131
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.52 E-value=0.048 Score=63.06 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=50.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC----ChHHHHHHHHHHhcccce
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----de~~ieql~kQL~KLidV 382 (484)
..|.|.+.|+||+|.+|+++|++.|+||.+-.+... +.. .-=++.|.+ +++..++|.+.|.+.++|
T Consensus 787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~-v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GER-VEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCE-EEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999888877 333 333333332 456678888888877665
No 132
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.016 Score=47.60 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS 126 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~ 126 (484)
|.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 67899999999999999999999999999998877755433 355543
No 133
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.29 E-value=0.021 Score=49.01 Aligned_cols=64 Identities=13% Similarity=0.247 Sum_probs=50.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhHHHHHHHHHhc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK 141 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-e~~veQI~kQL~K 141 (484)
.+.+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+.... + +=|-+.|. +..+++++++|.+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 356788888999999999999999999999999988875442 2 44445564 6677888888876
No 134
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.28 E-value=0.0082 Score=63.68 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=59.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
..|+|.+.=+|+||++++|+.++++.|+||.++.+.... +..-|+|-+++ ..-+.++++|+++-+|++|.-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 458999999999999999999999999999999996655 55556665654 4466899999999999998754
No 135
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.02 Score=47.86 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=46.3
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEeC----ChHHHHHHHHHHhc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK 378 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg--~te~~~iSRiTIVV~g----de~~ieql~kQL~K 378 (484)
.|.|...|+||+|.+|+..|.+-|++|.+-.++ .-...-+.-+-+..+| +++..+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999998887 4444444444443334 44556677766654
No 136
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.20 E-value=0.022 Score=64.58 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=59.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEEec
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~dl 151 (484)
.-.|.|.+.|++|+|+.|+.+++.-+.||.+++.... +.+. +++.+. .+-..+++|+++|.++-+|++|...
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 3489999999999999999999999999999997543 3332 444443 4678999999999999999999864
No 137
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.18 E-value=0.011 Score=60.07 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=50.8
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHHHHHHHhccc
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLI 380 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--de~~ieql~kQL~KLi 380 (484)
.|+++.+++.-.|+||+.+.|+++++.+|.||..++.......+.-.|.+.+.. ....+++|...|+++-
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999887434455555555554 1223555554444443
No 138
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.15 E-value=0.01 Score=64.71 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=60.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
..|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.+++.-|+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 34778777799999999999999999999999999987665553444444556668889999999999998865
No 139
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.07 E-value=0.022 Score=54.88 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=62.2
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
..-||+.++|+||||..++|+.+.+|-||.-...-...+ .+.+-+-+.|-+ ..+.++..|.-+-.|++|+.+..-+.
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence 346899999999999999999999999998655433222 234667777644 57899999999999999998877554
Q ss_pred hhh
Q 011491 157 VER 159 (484)
Q Consensus 157 V~R 159 (484)
++-
T Consensus 81 iyG 83 (218)
T COG1707 81 IYG 83 (218)
T ss_pred HhC
Confidence 443
No 140
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.05 E-value=0.028 Score=44.71 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=50.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK 378 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~K 378 (484)
+++.+.++||-|.++..+++. |.||-.+.-.... .+..++++++.. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999887654 566778877763 45789999999875
No 141
>PRK07334 threonine dehydratase; Provisional
Probab=96.03 E-value=0.029 Score=59.02 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=56.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL 379 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gde~~ieql~kQL~KL 379 (484)
+..|.|.+.|+||+|.+|+.+++.-+.||.+++..... ..+..+|.+++. .+.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999986431 356777777776 4888999999999985
No 142
>PRK07431 aspartate kinase; Provisional
Probab=96.02 E-value=0.3 Score=53.91 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=40.3
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi 380 (484)
.++||++.|+...+++.|+|+..++. .--+++++|+ ++..++.++.|++-.
T Consensus 530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~Lh~~f 580 (587)
T PRK07431 530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQAVHQAF 580 (587)
T ss_pred cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHHHHHHh
Confidence 58899999999999999999988872 1235667776 456788888888765
No 143
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.042 Score=45.34 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=50.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
|.+.+.|+||.|.++...|..+|+|+..|.--|... +.-..+-|-+.|+...+.++++.|.+
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 455568999999999999999999999999988654 34455566677888788888888876
No 144
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.96 E-value=0.038 Score=53.38 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=79.3
Q ss_pred c-eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc---ceE-EEe
Q 011491 312 L-RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI---DLH-EVQ 386 (484)
Q Consensus 312 ~-~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi---dVi-~V~ 386 (484)
| .+..|+++-.||||+.++|+.+++..|.||.......... .--|.+.+.+....+.++...|.++. ++. .++
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~ 82 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMK 82 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEE
Confidence 5 4568999999999999999999999999999888876644 44567777888788888888877766 332 233
Q ss_pred ccCCchhHHHhhh-eeEEecCccchH----HHHHHHHHcCcEEEEecCC
Q 011491 387 DITHLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDH 430 (484)
Q Consensus 387 dlt~~~~V~REL~-LIKV~~~~~~r~----eI~~la~ifrakIVDvs~~ 430 (484)
...... .++.. .+.|.+...+|+ +|-+....++..|.|.+.+
T Consensus 83 ~~~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 83 RTTARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred eccccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 332211 22332 366666666664 4455555667777776544
No 145
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.96 E-value=0.031 Score=57.97 Aligned_cols=67 Identities=15% Similarity=0.312 Sum_probs=55.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee---ecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg---~te~~~iSRiTIVV~g-de~~ieql~kQL~KL 379 (484)
+.++|++.+.|+||.|.+++.+++..|.||.++... +....+...+++.++. +.+..++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999999776 3334567788888874 567788999888764
No 146
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.94 E-value=0.03 Score=46.77 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=44.9
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg--~Ted~~--~iTIVV~g----de~~veQI~kQL~K 141 (484)
+|.|...|+||+|.+|+..|++-|++|.+-.++ .-.+.. .|-+..+| |+...+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998887 333322 25553334 34556666666643
No 147
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.92 E-value=0.021 Score=55.43 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=48.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHH
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK 371 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--de~~ieq 371 (484)
|+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|.+++ +++.+++
T Consensus 149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 67777779999999999999999999999999999888887778887874 4555554
No 148
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.86 E-value=0.036 Score=62.67 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=58.5
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~ 149 (484)
.-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+. +.+.+. .+-..+..|+.+|.++-+|++|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 44899999999999999999999999999999986543 333 444443 46789999999999999999885
No 149
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.85 E-value=0.036 Score=63.34 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=59.5
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEEec
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~dl 151 (484)
-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+. +++++. .+-..+.+|+.+|.++-+|++|...
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 48899999999999999999999999999999854331332 555444 4678999999999999999999864
No 150
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.05 Score=44.92 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=48.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhHHHHHHHHHhc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gde~~veQI~kQL~K 141 (484)
.+.+.+.|+||.|.++...|+.+|+|+..|.--|..... + +=|-+.|+...++++++.|.+
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 355666899999999999999999999999988865443 2 455667777778888887765
No 151
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.76 E-value=0.04 Score=46.02 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=48.1
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChhHHHHHHHHHhcC
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL 142 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIV-V~g----de~~veQI~kQL~KL 142 (484)
++.|...|+||+|.+|+..|++-|++|.+-.++...+... +-|. .+| |+...+.|.+.|.+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999987655433 4443 223 566677777777554
No 152
>PRK11899 prephenate dehydratase; Provisional
Probab=95.69 E-value=0.073 Score=54.24 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeC--ChHHHHHHHHHHhcccce
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPG--TDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~g--de~~ieql~kQL~KLidV 382 (484)
+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+. .++-..+-|-+.| ++..+.+.+++|++.-.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~ 265 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEE 265 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCc
Confidence 56677777999999999999999999999999999985 4566677777777 456788888888876543
No 153
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.61 E-value=0.028 Score=54.53 Aligned_cols=56 Identities=23% Similarity=0.238 Sum_probs=45.4
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChhHHHH
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ 134 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g--de~~veQ 134 (484)
.|.|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+ +|.|.+++ +++.+++
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 47888888999999999999999999999999999876555 47777764 3444443
No 154
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.59 E-value=0.017 Score=55.31 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=52.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc----E----EEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----L----FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~----~----iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
..|.+.+-+.||||.+++++.+|.++|+||++|..-..-.++ . +|+-+.. ...+.++..+++.|-|=+.|+
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNVD 169 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcce
Confidence 457999999999999999999999999999999986543332 2 3333332 335777778877765554443
No 155
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.55 E-value=0.028 Score=61.45 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=60.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
.|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-++ +..-+.++++|.++.+|.+|..+
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD--DPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC--CCCCHHHHHHHhcCCCcceEEEE
Confidence 37787777999999999999999999999999999987766554544444 44568888999999999998765
No 156
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.53 E-value=0.061 Score=44.94 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhcc
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL 379 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~KL 379 (484)
.+.|...|+||+|.+|+..|++-||+|.+-.++...+.- .-.-.+.+ | ++...+.|.+.|...
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera-~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDA-HQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceE-EEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999998888755433 33333332 3 555677777777654
No 157
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.50 E-value=0.36 Score=56.25 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=46.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CC---hHHHHHHHHHHhccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GT---DESIGKLVQLLHKLI 380 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd---e~~ieql~kQL~KLi 380 (484)
.+|.|.+.|+||+|.+|+++|+..|.||.+-.+... +...--.-.|.+ |. ++..++|.+.|.+.+
T Consensus 797 t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999988887 333322223323 21 233366666665544
No 158
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=95.43 E-value=0.042 Score=52.25 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=59.3
Q ss_pred EEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEe
Q 011491 315 HTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 315 htLsilV--eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~ 386 (484)
+.|.++. .+.||+|..|+++.+.||++|-.+-....|-.+-+++||++.+- .-..++.||.|+--|.+|.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~--iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERP--IPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEecc--CCHHHHHHHhcccCceeEE
Confidence 5666766 56899999999999999999999888877777889999999743 4567899999999998875
No 159
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.30 E-value=0.017 Score=55.44 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=49.7
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCC----eEEEEEEEeC-ChHHHHHHHHHHhcccceEEE
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG----LSCITTVVPG-TDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~----iSRiTIVV~g-de~~ieql~kQL~KLidVi~V 385 (484)
.|.+.+-++||||+++++|.+|.++|+||++|..-..-.++ +-.+.|.+.- ---.+.+|..+++.|-|=+.|
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV 168 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence 47889999999999999999999999999999886543332 2233333321 123567777777666443333
No 160
>PRK07334 threonine dehydratase; Provisional
Probab=95.29 E-value=0.072 Score=56.13 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=51.8
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChhHHHHHHHHHhcC
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL 142 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te---d~~--~iTIVV~-gde~~veQI~kQL~KL 142 (484)
...|.|.+.|+||+|++|+.+++.-+.||.+++..... ..+ .+.+++. .|.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999986431 223 2555544 4778899999999885
No 161
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.27 E-value=0.23 Score=50.85 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=36.9
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee
Q 011491 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG 113 (484)
Q Consensus 74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg 113 (484)
+++|.+++|++.-.|+||+.++||++++..|.||..++.-
T Consensus 4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 3467788999999999999999999999999999999975
No 162
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.27 E-value=0.029 Score=61.31 Aligned_cols=73 Identities=18% Similarity=0.330 Sum_probs=58.2
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
-|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+.-.+++.-|+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEE
Confidence 4677777789999999999999999999999999987666553333334455667788889999999888765
No 163
>PRK06382 threonine dehydratase; Provisional
Probab=95.24 E-value=0.065 Score=56.54 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=53.6
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee----ecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL 379 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg----~te~~~iSRiTIVV~gd-e~~ieql~kQL~KL 379 (484)
...|.+.+.|+||.|.+++.+|...|.||.++... +. ..+...+++.++.. .+..++|.+.|++.
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999999999875 33 35667888888854 35567899888764
No 164
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.20 E-value=0.049 Score=55.38 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=46.9
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhc
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~K 141 (484)
++|++.-.|+||..++||++++.+|.||..++.-.....+. |.+.++.++ ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 37899999999999999999999999999999876655566 555565433 235555555544
No 165
>PRK11899 prephenate dehydratase; Provisional
Probab=95.13 E-value=0.11 Score=52.84 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=53.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCccee
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVi 146 (484)
.+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + +-|-+.| ++..+++.+++|.+.-.-+
T Consensus 193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~ 266 (279)
T PRK11899 193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEV 266 (279)
T ss_pred ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcE
Confidence 36778888899999999999999999999999999887544 3 2 4455555 4667888888887765433
No 166
>PRK06635 aspartate kinase; Reviewed
Probab=95.12 E-value=0.13 Score=53.79 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=82.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChhHHHHHHHHHhcCc---ceeEEEecCCchhhhhhh
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVEREL 161 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~gde~~veQI~kQL~KLi---dVikV~dlt~~~~V~REL 161 (484)
..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++. ...++..+.|+++. .+..+. +.+.+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i~-------~~~~i 340 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESVT-------YDDDI 340 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence 67899999999999999999999998776554 3447887763 33555666666632 222222 45678
Q ss_pred eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 162 aLiKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
+++.|... +..-.++++....++.+|.-++....-+-++=+.+..+..++.|.
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 88888532 233457888888889899888654455555555566666677664
No 167
>PRK08198 threonine dehydratase; Provisional
Probab=95.09 E-value=0.11 Score=54.51 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=57.4
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~g-de~~ieql~kQL~KL 379 (484)
.-+..+|++.+.|+||.|.++..+++..|.||.+++..+.. ..+...++++++. +.+.+++|++.|++.
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 33467999999999999999999999999999999987632 2577888888884 556788999998764
No 168
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.01 E-value=0.1 Score=54.27 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=50.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChhHHHHHHHHHhcC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL 142 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg---~Ted~~--~iTIVV~g-de~~veQI~kQL~KL 142 (484)
+.++|++.+.|+||.|.+++.++++.|.||.++... .....+ .+++.++. +.+.+++|++.|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 456999999999999999999999999999999765 221223 37777764 456778888888664
No 169
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.97 E-value=0.088 Score=43.28 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=45.8
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccce
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL 382 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~KLidV 382 (484)
..+.||++.+|.+.|++.|.|++-+..+. .+++++++.++ +.+++|++.|+++-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 46789999999999999999999996421 67999998654 3789999999995444
No 170
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.70 E-value=0.15 Score=57.99 Aligned_cols=72 Identities=26% Similarity=0.356 Sum_probs=61.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+ . |+|.|+ +-..+.+|+.||..+-+|+.|..
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 456789999999999999999999999999999998876 333 2 555554 67899999999999999999874
No 171
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.70 E-value=0.079 Score=40.77 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=39.3
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
+.|+||++.++...+++.|.||+.+..+..+.. -.+++++++. +..+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence 478999999999999999999998876654332 2467777763 334444444444
No 172
>PRK06382 threonine dehydratase; Provisional
Probab=94.67 E-value=0.12 Score=54.60 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=50.7
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee----ecCCC-cEEEEEEeCC-hhHHHHHHHHHhcC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDK-ALFTIVVSGT-ERVLRQVVEQLNKL 142 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg----~Ted~-~~iTIVV~gd-e~~veQI~kQL~KL 142 (484)
++..|.+.+.|+||.|.+++.+|...|.||.++... +.++. ..+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 467999999999999999999999999999999875 33222 2477777753 34566888888653
No 173
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.66 E-value=0.16 Score=40.41 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=45.8
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeC-ChhHHHHHHHHHhc
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSG-TERVLRQVVEQLNK 141 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~g-de~~veQI~kQL~K 141 (484)
+++.+.++||-|.++..+++. |.||-.+.-..... ...+.+++.. +.+.++++.++|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 468889999999999999999 99999998765442 2345555552 45788899988865
No 174
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.49 E-value=0.19 Score=41.79 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=57.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEeccCCch
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP 392 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-e~~ieql~kQL~KLidVi~V~dlt~~~ 392 (484)
.++.+.+.|+||-|.+++.+++ |-||..+.-..... +-.++.+++.. + .+.++++.+.|++.= .++.+.++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~ 76 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE 76 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence 4688999999999999999999 77888766665443 56778887774 3 478889999887743 3566677766
Q ss_pred hHH
Q 011491 393 FAE 395 (484)
Q Consensus 393 ~V~ 395 (484)
...
T Consensus 77 ~~~ 79 (85)
T cd04906 77 LAK 79 (85)
T ss_pred HHH
Confidence 543
No 175
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.40 E-value=0.099 Score=53.48 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=49.7
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEe--C--ChHHHHHHHHHHhcccc
Q 011491 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVP--G--TDESIGKLVQLLHKLID 381 (484)
Q Consensus 310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg--~te~~~iSRiTIVV~--g--de~~ieql~kQL~KLid 381 (484)
+.|.+++|++.-.|+||+.++||++++..|.||..++.- .....-..|+.++.. + +...+++-.+++-+-.+
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 457788999999999999999999999999999999885 222233445555533 2 23344444444444444
No 176
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.38 E-value=0.075 Score=58.13 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=59.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
|+|-+.-.|+||++.+|+.++...++||.++.++..+..+..=|.|-++ +..-+.++++|.++.+|.+|..+
T Consensus 452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 6777777899999999999999999999999999987776655555555 44557788888888898888765
No 177
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.38 E-value=0.11 Score=53.80 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=49.5
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLID 381 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~--~~iSRiTIVV~gde~~ieql~kQL~KLid 381 (484)
-|.+.+.+.|+||.|.+|+.++.+.|+||+.|.+-++-. .|+-|+++. +++..++..+.|++-..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK---NEEDRERAKALLEEFWT 356 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC---CHHHHHHHHHHHHhcCc
Confidence 489999999999999999999999999999999976543 355555544 33455666666655543
No 178
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.33 E-value=0.97 Score=43.12 Aligned_cols=138 Identities=24% Similarity=0.275 Sum_probs=95.0
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhcc-cceEEEecc
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI 388 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KL-idVi~V~dl 388 (484)
+|+.+|.|..+|+||=|-++..=.+.-|-||-++.=..... .+-...-|++.+| ++...++.+-+++. +.++++...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~ 82 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA 82 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence 57899999999999999999999999999998766555433 5667788888887 56677777777332 344444322
Q ss_pred CCchhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEec--------CC--EEEEEEeCCHHHHHHHHHHhcc
Q 011491 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS--------DH--TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 389 t~~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs--------~~--si~iE~TG~~~Kidafi~lL~p 452 (484)
. ...+-...||-=-+...-+.-|-.+-.+-+|.++|++ +. -++++..| .+|++..++.|+.
T Consensus 83 ~--~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e 153 (170)
T COG2061 83 R--LREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE 153 (170)
T ss_pred C--cceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence 2 2222234555434455556778888889999999984 22 35666665 4667666666654
No 179
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.30 E-value=0.13 Score=53.33 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=51.7
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhHHHHHHHHHhcCcc
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN 144 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gde~~veQI~kQL~KLid 144 (484)
-|.+.|.+.|+||.|.+++.++.+.|+||+.+.+-++-+. |.+.|.+.. +...++..+.|.+-..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWT 356 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 4899999999999999999999999999999999766433 468888873 4456666666665443
No 180
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.28 E-value=0.13 Score=39.51 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=38.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~K 141 (484)
+.|+||++.++...+++.|.||+.+..+..... ..+++++.. ...+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876654332 247777763 334444444444
No 181
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=94.22 E-value=0.19 Score=40.70 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=44.1
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhc
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK 378 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~K 378 (484)
..+.||++.||...+++.|+|++.++.++ .+++++++.++ +.+..|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 46789999999999999999999886422 67999998654 478899999999
No 182
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.22 E-value=0.11 Score=52.77 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=46.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK 378 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~K 378 (484)
++|++.-.|+||+.++||++++.+|.||..++..-....+.--|.+.++.++ ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3788999999999999999999999999999888765555555555555332 234444444433
No 183
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.98 E-value=0.29 Score=50.26 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=60.5
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V 385 (484)
+..+.+|.+.+.|+||.|-++.+.|+.||+|+..|.--|+.. ++-..+-|=+.| ++..+.+.++.|.++-..+++
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 455788999999999999999999999999999999998874 565666666665 556688888888877665554
No 184
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.92 E-value=0.23 Score=50.88 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=56.7
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEE--eCChhHHHHHHHHHhcCcceeEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVV--SGTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV--~gde~~veQI~kQL~KLidVikV 148 (484)
-.+.+|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . +-|=+ +.++..+++.++.|.++-..+|+
T Consensus 192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 357889999999999999999999999999999998887643 3 2 44434 45666788888888877665555
No 185
>PRK11898 prephenate dehydratase; Provisional
Probab=93.84 E-value=0.33 Score=49.35 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=50.5
Q ss_pred eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhHHHHHHHHHhcCcc
Q 011491 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVN 144 (484)
Q Consensus 78 ~khtISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--de~~veQI~kQL~KLid 144 (484)
.+..|.+.+.|+ ||.|.++.+.|+++|+|+.+|---|.... .+ +=+-++| ++..++++++.|.+...
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 356777777665 99999999999999999999998886543 22 3333444 44578999999988654
No 186
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.83 E-value=0.14 Score=42.10 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=44.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH----HHH-HHHHHHhcccce
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL 382 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~----~ie-ql~kQL~KLidV 382 (484)
+.+.||++.+|...|++.|+||+-++.++ ..++++++.++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 568999986653 244 688888885444
No 187
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.80 E-value=0.25 Score=40.58 Aligned_cols=56 Identities=16% Similarity=0.365 Sum_probs=44.0
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHHhcCcce
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV 145 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL~KLidV 145 (484)
..+.||++.+|.+.|++.|.|++-++.+. .-+++++..++ +.+++|.+.|+++=+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 46789999999999999999999997422 44777777544 3788999999985433
No 188
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.73 E-value=0.067 Score=44.88 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred EEEEEEcC-chhHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChhHHHHHHHHHhcCc
Q 011491 81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLV 143 (484)
Q Consensus 81 tISilVeN-~pGVL~RIagLFsRRGyNIeSLtVg~Ted---------~~-~iTIVV~gde~~veQI~kQL~KLi 143 (484)
+++++-.+ ++|.+++|+.+++.+|+||+.++-= +.. +- .|.+.+.+.+..++.+.++|.++-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 36788888 9999999999999999999988762 111 22 367777877777888888886553
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.68 E-value=0.62 Score=48.72 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=88.9
Q ss_pred EEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 80 htISil---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ .-++++++. +..+++.+.|++...-.....+ .
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~i----~ 332 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLDRV----E 332 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCceE----E
Confidence 457776 7899999999999999999999999876543 347788853 3456666666664322111111 2
Q ss_pred hhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 157 V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
+.+.+++|-|-... ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|..
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence 56778888886543 234578888888889998888766666666666777777777653
No 190
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.67 E-value=0.078 Score=44.48 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=48.1
Q ss_pred EEEEEeC-chhHHHHHHHHHhccCceeeeeeeee-------cCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 317 LsilVeN-~pGVL~RVtglFsRRGyNIeSLtVg~-------te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
++++-.+ ++|.+.+|+.+++.+|.||+.+.-=. ...+...-|.+.+.|.+...+.+.++|.++
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~l 72 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLEL 72 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 6788888 99999999999999999999887621 112234567777887767777777777655
No 191
>PRK08198 threonine dehydratase; Provisional
Probab=93.61 E-value=0.33 Score=50.92 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=51.5
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---Cc--EEEEEEeC-ChhHHHHHHHHHhcC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL 142 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~--~iTIVV~g-de~~veQI~kQL~KL 142 (484)
+..++++.+.|+||.|.++..+++..|.||.+++..+... .+ .++++++. +.+.+++|++.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4579999999999999999999999999999999875321 23 26666663 455788899988764
No 192
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=93.55 E-value=0.38 Score=52.46 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCe--EEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 308 ~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~i--SRiTIVV~gde~~ieql~kQL~KLidVi~V 385 (484)
+.++..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....- ..+-|-+.|+...+.++++.|.+..+.++|
T Consensus 25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~ 104 (464)
T TIGR01270 25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV 104 (464)
T ss_pred cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence 445555667777779999999999999999999999999888754432 355566678888899999999998887666
Q ss_pred e
Q 011491 386 Q 386 (484)
Q Consensus 386 ~ 386 (484)
.
T Consensus 105 ~ 105 (464)
T TIGR01270 105 S 105 (464)
T ss_pred c
Confidence 4
No 193
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.49 E-value=0.28 Score=36.05 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=37.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhHHHHHHHH
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gde~~veQI~kQ 138 (484)
+.|.||++.++...+++.|.||+.++.++..... .+++++.. +..++..+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~ 59 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI 59 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence 5789999999999999999999999887644322 37777753 334444443
No 194
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.46 E-value=2.2 Score=40.83 Aligned_cols=137 Identities=22% Similarity=0.258 Sum_probs=94.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCC-hhHHHHHHHHHhc-CcceeEEEe
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED 150 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV~gd-e~~veQI~kQL~K-LidVikV~d 150 (484)
.+|+-++.|-..|+||=|-++..=++.-|-||-++.=...... .+ +.|++.+| +.....+.+-+++ =+.++++..
T Consensus 2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg 81 (170)
T COG2061 2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG 81 (170)
T ss_pred cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence 3688999999999999999999999999999988775544332 23 77888877 5556667777733 355555543
Q ss_pred cCCchhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 011491 151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 151 lt~~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs--------~~s--l~iE~TG~~~KIdafi~~L~~ 215 (484)
..-. .+-...||-=-+...-+.-|-.+-.+-+|.+||++ +.+ ++|+..| .+|++..++.|+.
T Consensus 82 ~~~~--~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e 153 (170)
T COG2061 82 ARLR--EKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE 153 (170)
T ss_pred cCcc--eeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence 3221 22234455434455567788888899999999984 233 5555555 5677777776654
No 195
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.36 E-value=0.14 Score=54.19 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=41.7
Q ss_pred EEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491 314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD 366 (484)
Q Consensus 314 ~htLsilVe-N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde 366 (484)
.|.|.+.+. |+||.|.+|+++|+++|+||.+|....+....+. +-|-+.+.+
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~~ 347 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPGS 347 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEeccc
Confidence 488999995 9999999999999999999999999555444444 666666543
No 196
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.35 E-value=0.4 Score=50.11 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=86.5
Q ss_pred EEEEEE---EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 315 htLsil---VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ ..++++++. +..+++++.|++...-.....
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~---- 330 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLDR---- 330 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCce----
Confidence 356666 7899999999999999999999999887654 347888863 346666777766532111111
Q ss_pred hhHHHhhheeEEecCcc-----chHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 392 PFAERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 392 ~~V~REL~LIKV~~~~~-----~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
-.+.+.+++|-|--..- .-..+++.....+.+|.-++....-+-+.=+.+..+..++.|.
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh 395 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH 395 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence 12456677777754331 1247888888888889888776566666556666676666664
No 197
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.11 E-value=0.31 Score=35.78 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=39.5
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL 376 (484)
+.|.||++.++...+.+.|.||+.++.++... +...++++++. +..++.++.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l 60 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL 60 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence 57899999999999999999999998876543 33567777763 3445544443
No 198
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.10 E-value=0.43 Score=50.71 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid 381 (484)
+-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+.. ++-..+-|=+.|. +..+++.+++|++.-.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 566777778999999999999999999999999988765 4556666667764 4568888888888654
No 199
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.88 E-value=0.3 Score=56.70 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=51.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhHHHHHHHHHhcCcce
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV 145 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----de~~veQI~kQL~KLidV 145 (484)
....|.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.=++.|.+ +++..+.|.+.|.+.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999888877222222333332 346678888888776654
No 200
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=92.87 E-value=0.28 Score=40.21 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=44.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--H-HHHHHHHHHhcccce
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL 382 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~-~ieql~kQL~KLidV 382 (484)
....||++.+|.+.|++.|.|++-+..++ ..++++++.++ + .++.|.+-|+|+-+|
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 35579999999999999999999997522 66889998542 3 788999999985443
No 201
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.86 E-value=0.3 Score=51.65 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=39.5
Q ss_pred EEEEEEEEc-CchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCC
Q 011491 79 RHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGT 128 (484)
Q Consensus 79 khtISilVe-N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gd 128 (484)
-|.|.+.+. |+||+|.+|+++|+++|+||.+|....+..... +-|-+.+.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~ 346 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPG 346 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEecc
Confidence 578999995 999999999999999999999999854433332 55555543
No 202
>PRK12483 threonine dehydratase; Reviewed
Probab=92.83 E-value=2.5 Score=46.86 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=90.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE--eCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV--~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
+++.+++...++||-|.+++.+++.+ ||..+.--..... ..+.+++ .+.+...++|+++|++.= .++.++++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn 419 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD 419 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence 57899999999999999999999988 9998876542222 2344444 444444499999997643 577888886
Q ss_pred hh---------------hhhhheeEEEeCCCCCHHHHHHHHHhcCcE--EEEe-----cCCE----EEEEEeCChhHHHH
Q 011491 155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI-----SEHA----LTIEVTGDPGKMVA 208 (484)
Q Consensus 155 ~~---------------V~RELaLiKV~~~~~~r~eI~~l~~~FrAk--IVDv-----s~~s----l~iE~TG~~~KIda 208 (484)
+. +.|| +|+.|..+ +......+.++.++-+ |-.. +.+. +=|++. .++.++
T Consensus 420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~ 495 (521)
T PRK12483 420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA 495 (521)
T ss_pred HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence 65 3455 47777765 6667788888888762 2221 1111 236763 366788
Q ss_pred HHHHhccCC
Q 011491 209 VQRNLSKFG 217 (484)
Q Consensus 209 fi~~L~~fG 217 (484)
|++.|+..|
T Consensus 496 ~~~~l~~~g 504 (521)
T PRK12483 496 LDAALAALG 504 (521)
T ss_pred HHHHHHHCC
Confidence 999988765
No 203
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=92.75 E-value=0.51 Score=38.24 Aligned_cols=52 Identities=15% Similarity=0.424 Sum_probs=42.8
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL~K 141 (484)
..+.||++.||...|++.|+|++.++.+ +..+++++..++ ..+..|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s----~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTS----EVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcC----CcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 5678999999999999999999988632 245888887554 488899999999
No 204
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=92.73 E-value=0.39 Score=51.03 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=53.4
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCccee
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVi 146 (484)
+-.|.+.+.|+||.|.++.+.|+.||+|+.+|---|+... + + +=|-+.| ++..+++.+++|++.-.-+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~ 369 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSL 369 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcE
Confidence 6677788899999999999999999999999998887655 2 2 4444555 4567888888888765433
No 205
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.73 E-value=0.58 Score=38.93 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=52.8
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g-d-e~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
.++.+.+.|+||-|.+++.+++ |.||..+.-.... +.+.+.++++. + .+.++++.+.|++.= .++.++++.+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~ 77 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL 77 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence 4789999999999999999999 7788876665433 33445555553 3 467888888887743 35666676654
Q ss_pred h
Q 011491 157 V 157 (484)
Q Consensus 157 V 157 (484)
.
T Consensus 78 ~ 78 (85)
T cd04906 78 A 78 (85)
T ss_pred H
Confidence 4
No 206
>PRK11898 prephenate dehydratase; Provisional
Probab=92.69 E-value=0.67 Score=47.15 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=52.7
Q ss_pred EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491 314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID 381 (484)
Q Consensus 314 ~htLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid 381 (484)
+-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+-+.|+ +..+.++++.|++.-.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56777777664 9999999999999999999999988653 3445555556654 3478999999988654
No 207
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.61 E-value=0.35 Score=39.78 Aligned_cols=56 Identities=13% Similarity=0.392 Sum_probs=42.2
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh----HHH-HHHHHHhcCcce
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV 145 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~----~ve-QI~kQL~KLidV 145 (484)
+.+.||++.+|...|++.|+||+-++.++ .-+++++..++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 347777776553 344 577888884433
No 208
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=92.51 E-value=0.33 Score=37.29 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=39.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHH
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL 376 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL 376 (484)
.++||+..+|..+|.+.|.|++.++.++ -.+++++..++ +.++.|++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996422 56899998665 6777777765
No 209
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.42 E-value=0.3 Score=37.63 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=40.6
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
.++||++.++...+++.|.|++.++.+.++ .++.++++.+ ..++.++.|+|.
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~~ 63 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHTN 63 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHHH
Confidence 468999999999999999999999876643 6788888854 355556666653
No 210
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=92.25 E-value=0.56 Score=35.18 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=39.2
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi 380 (484)
..+.||++.++.+.+++.|.|++.++.. + .+++++++. ...+++.+-|+|..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~~ 61 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEAF 61 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHHh
Confidence 4577999999999999999999998742 1 568888874 34555666666543
No 211
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.21 E-value=0.43 Score=55.77 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=49.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEE-e----CChhHHHHHHHHHhcCcc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVV-S----GTERVLRQVVEQLNKLVN 144 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV-~----gde~~veQI~kQL~KLid 144 (484)
....|.|...|+||+|.+|++.|++.|+||.+..+.. .+.. . +.+.- + .++...+.|.+.|.+.++
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999984 4332 2 33332 1 234457778888866653
No 212
>PRK12483 threonine dehydratase; Reviewed
Probab=92.01 E-value=3.1 Score=46.03 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=92.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHH-HHHHHHHhcccceEEEeccCC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~i-eql~kQL~KLidVi~V~dlt~ 390 (484)
+.+.+++...++||-|.+++.+++.+ ||..+.-... ..+-..+.+++.. +.+.. ++|++.|++.= .++.++++
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd 418 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD 418 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence 46899999999999999999999988 9998777653 3344677777763 33454 99999997643 46788888
Q ss_pred chhH---------------HHhhheeEEecCccchHHHHHHHHHcCcE--EEEec-----CC----EEEEEEeCCHHHHH
Q 011491 391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRAR--AVDVS-----DH----TITLELTGDLNKII 444 (484)
Q Consensus 391 ~~~V---------------~REL~LIKV~~~~~~r~eI~~la~ifrak--IVDvs-----~~----si~iE~TG~~~Kid 444 (484)
.+.. .|| +|+.|..+ +.....++.++.++-+ |-..+ .+ .+=|++. .++.+
T Consensus 419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~ 494 (521)
T PRK12483 419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERA 494 (521)
T ss_pred CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHH
Confidence 7663 344 36677654 4556788888877752 22211 11 1336763 37778
Q ss_pred HHHHHhccCC
Q 011491 445 ALQRLLEPYG 454 (484)
Q Consensus 445 afi~lL~pyG 454 (484)
+|++.|+..|
T Consensus 495 ~~~~~l~~~g 504 (521)
T PRK12483 495 ALDAALAALG 504 (521)
T ss_pred HHHHHHHHCC
Confidence 9999998776
No 213
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=91.72 E-value=0.7 Score=44.22 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=55.8
Q ss_pred ceEEEEEEEE--cCchhHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 77 VKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 77 ~~khtISilV--eN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed~~~iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
|-.++|.++. .+.||+|+.|+++.+.||++|..+-.... .++.++||++++ ..-..++.||.|+--|.+|.
T Consensus 91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence 4567888887 46799999999999999999998776533 344579999864 45566889999998888775
No 214
>PRK02047 hypothetical protein; Provisional
Probab=91.65 E-value=1.9 Score=37.20 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=64.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCce--eeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyN--IeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
..+.+.+...|.++..+.|..++.++... -.+++.-++....+..+|+.+. .++++++.|-+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 35899999999999999999999998555 6678899999999999999987 6888999999999999888543
No 215
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.63 E-value=0.93 Score=49.23 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=52.0
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhHHHHHHHHHhcCc
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV 143 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-e~~veQI~kQL~KLi 143 (484)
+..|.+.+.|+||.|.+|..+|+.+|+|+..|---|+.... . +=|-+.|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 56788888999999999999999999999999887765432 2 44445554 477889999998876
No 216
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=91.53 E-value=0.57 Score=35.94 Aligned_cols=50 Identities=14% Similarity=0.402 Sum_probs=39.2
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHH
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL 139 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL 139 (484)
..++||+..+|...|.+.|.|++.++.++ .-+++++..++ +.++.+++.|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 34679999999999999999999996422 45888887655 6677777665
No 217
>PLN02317 arogenate dehydratase
Probab=91.42 E-value=1.1 Score=48.03 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=52.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC---------------CeEEEEEEEeCC--hHHHHHHHHHH
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL 376 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~---------------~iSRiTIVV~gd--e~~ieql~kQL 376 (484)
+-.|.+.++|+||.|.++..+|+.||+|+..|.--|.-.. .-..+-|=+.|. +..+.+.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 4566666799999999999999999999999998876544 223444445554 66788888888
Q ss_pred hcccceE
Q 011491 377 HKLIDLH 383 (484)
Q Consensus 377 ~KLidVi 383 (484)
++.-.-+
T Consensus 363 ~~~~~~l 369 (382)
T PLN02317 363 QEFATFL 369 (382)
T ss_pred HHhcCeE
Confidence 8765433
No 218
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=91.32 E-value=1.7 Score=43.38 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=60.4
Q ss_pred eEEEEEEEEeCchh--HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEE--eC-ChHHHHHHHHHHhcccceEEEe
Q 011491 313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV--PG-TDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 313 ~~htLsilVeN~pG--VL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV--~g-de~~ieql~kQL~KLidVi~V~ 386 (484)
..|++++.+.+.++ ++.++...+...+|.+.++.+.+.++++-..|+..+ .+ ++..+++++.+|.....|.+|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 35788888888664 699999999999999999999877666645555544 43 5778999999999999999886
No 219
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=91.29 E-value=0.67 Score=38.00 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=42.4
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--h-HHHHHHHHHhcCcc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVN 144 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~-~veQI~kQL~KLid 144 (484)
+...||.+.+|.+.|++.|.|++-++.+. .-+++++..++ . .++.|.+-|+|+-+
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~ 68 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGT 68 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheE
Confidence 35679999999999999999999997522 34777776432 3 78889999988443
No 220
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=91.27 E-value=0.68 Score=35.32 Aligned_cols=51 Identities=25% Similarity=0.448 Sum_probs=39.5
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.+.||++.||...+++.|+|++.++-+.++ .+++++++.+ ..++.++.|++
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~--~~~~~~~~lh~ 62 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED--DATKALRAVHE 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 468999999999999999999998776533 6788888843 35555666554
No 221
>PRK06635 aspartate kinase; Reviewed
Probab=91.23 E-value=1.2 Score=46.73 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=81.1
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEeccCCchhHHHh
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITHLPFAERE 397 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL---idVi~V~dlt~~~~V~RE 397 (484)
..|+||+|.||...|.+.|+||+.++.+.+++ +...++++++. +..++..+.|+++ +.+..+ .+.+.
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~-~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~ 339 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSED-GKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD 339 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCC-CceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence 57899999999999999999999987775432 34567888863 3355666666663 222222 13456
Q ss_pred hheeEEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 398 LILIKIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 398 L~LIKV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
++++.|... +..-.++++....++.+|.-++....-+-++=+.+..+..++.|.
T Consensus 340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 778887432 222357888888888888888654445555555566666666664
No 222
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.15 E-value=1.2 Score=48.52 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=53.7
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI 380 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KLi 380 (484)
+-+|.+.+.|+||.|.+|..+|+.+|+|+..|.--|+.. ++-..+-|-+.|. +..+.++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 567777779999999999999999999999999888643 3333455556665 477899999998876
No 223
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.01 E-value=0.24 Score=43.06 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=44.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (484)
+++..+++.=.|+||+.+.|++++++.|.||. .++.|--.++-.|-+.|.-+
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIl--disQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNIL--DISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEE--EHHHHHHhhhceeeeEEcCC
Confidence 46889999999999999999999999999996 56666667777777778754
No 224
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.98 E-value=0.7 Score=35.14 Aligned_cols=53 Identities=28% Similarity=0.401 Sum_probs=40.2
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI 380 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi 380 (484)
.+.||++.++...+++.|.|++-++.+.++ -+++++++. ...+++.+-|++..
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~~ 64 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDEF 64 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHHh
Confidence 467999999999999999999998876643 567788874 33566666666543
No 225
>PLN02550 threonine dehydratase
Probab=90.94 E-value=3.7 Score=46.32 Aligned_cols=135 Identities=10% Similarity=0.170 Sum_probs=95.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
+++.+.+.+.++||-|.+++.++..+ ||..+.-.. ...+-.++.+.+. -+.+.+++|+..|++.= .++.|+++.
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 46889999999999999999999987 999888776 3445567777776 36678999999998853 578889887
Q ss_pred hhHHH-------hh------heeEEecCccchHHHHHHHHHcCcE--EEEe----cC-----CEEEEEEeCCHHHHHHHH
Q 011491 392 PFAER-------EL------ILIKIAVNTAARRDVLDIAKIFRAR--AVDV----SD-----HTITLELTGDLNKIIALQ 447 (484)
Q Consensus 392 ~~V~R-------EL------~LIKV~~~~~~r~eI~~la~ifrak--IVDv----s~-----~si~iE~TG~~~Kidafi 447 (484)
+...- |- +|+.|..+ +....+.+.++.++.+ |-.. +. =.+-||+. .++++.|+
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~ 567 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK 567 (591)
T ss_pred hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence 66422 11 25556543 3345677777777662 2211 00 12347775 48888999
Q ss_pred HHhccCCc
Q 011491 448 RLLEPYGI 455 (484)
Q Consensus 448 ~lL~pyGI 455 (484)
+.|+..|.
T Consensus 568 ~~l~~~gy 575 (591)
T PLN02550 568 SRANALGY 575 (591)
T ss_pred HHHHHcCC
Confidence 99988774
No 226
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.91 E-value=0.62 Score=39.01 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=33.3
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD 366 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde 366 (484)
..+.||++.+|...|++.|+||+-++.++ ..++++++.++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhh
Confidence 46789999999999999999999996422 66899998654
No 227
>PRK08210 aspartate kinase I; Reviewed
Probab=90.78 E-value=3.8 Score=43.13 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=78.2
Q ss_pred EEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhh
Q 011491 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (484)
Q Consensus 80 htISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~ 158 (484)
..|++.-.|. ||.++||.+.|.+.|+||+.++.... -+++++.. ..++++.+.|+++- ..-.+.
T Consensus 272 ~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~----~is~~v~~--~~~~~a~~~l~~~~---------~~v~~~ 336 (403)
T PRK08210 272 TQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT----EVVFTVSD--EDSEKAKEILENLG---------LKPSVR 336 (403)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc----eEEEEEcH--HHHHHHHHHHHHhC---------CcEEEe
Confidence 3555555555 99999999999999999999977621 35566653 33556656565531 022356
Q ss_pred hhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 159 RELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 159 RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
+.+++|.|-... ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 778888886543 33446777777788888876655444444445555666666654
No 228
>PRK03381 PII uridylyl-transferase; Provisional
Probab=90.73 E-value=0.66 Score=53.33 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=47.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC---ChHHHHHHHHHHhccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG---TDESIGKLVQLLHKLI 380 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g---de~~ieql~kQL~KLi 380 (484)
-.+.|+..|+||++++|+++|++.|+||.+-.+-. ..|..=.++.|.+ .....+++.+.|++.+
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 47899999999999999999999999999988864 4455555555553 2122456666666543
No 229
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.72 E-value=0.77 Score=53.08 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=85.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcccceEEEec
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~KLidVi~V~d 387 (484)
...|.|...|+||+|.+|+++|++.|+||.+-.+..|.+.-.--.-.|.+. +++..++|.+.|.+.++=.
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~---- 743 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL---- 743 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC----
Confidence 357999999999999999999999999999999988876644444444332 1234666666665554210
Q ss_pred cCCchhHHHhhheeEEecCccchHHHHHHHHHcCc-EEEEe----cCCEEEEEEeCC--HHHHHHHHHHhccCCc-EEEe
Q 011491 388 ITHLPFAERELILIKIAVNTAARRDVLDIAKIFRA-RAVDV----SDHTITLELTGD--LNKIIALQRLLEPYGI-CEVA 459 (484)
Q Consensus 388 lt~~~~V~REL~LIKV~~~~~~r~eI~~la~ifra-kIVDv----s~~si~iE~TG~--~~Kidafi~lL~pyGI-lEva 459 (484)
....+ .+.+-... .| + ...|.- .-|.+ +++..++|++|. +.=+-.+.+.|..+|+ ++.+
T Consensus 744 ~~~~~------~~~~~~~~--~~----~-~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a 810 (850)
T TIGR01693 744 AKDPD------TISARRAR--RR----R-LQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSA 810 (850)
T ss_pred Ccccc------ccccccCC--cc----c-ccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEE
Confidence 00000 01110000 01 0 012221 11222 456788888876 7888999999999997 7888
Q ss_pred ecceeE
Q 011491 460 RTGRVA 465 (484)
Q Consensus 460 RTG~vA 465 (484)
++...+
T Consensus 811 ~i~t~~ 816 (850)
T TIGR01693 811 KITTFG 816 (850)
T ss_pred EEEecC
Confidence 887765
No 230
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=90.41 E-value=1.2 Score=48.75 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=58.2
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~-~-iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
..+-+|.+.+.|+||.|.++..+|+.+|+|+..|---++... . . +=|-+.|+...++++++.|.+..+.++|.
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 345567777799999999999999999999999988776433 2 3 44556687788999999999988876664
No 231
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.22 E-value=0.88 Score=34.68 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=38.9
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.+.||++.|+...+++.|.|++.++.+.++ .+++++++.+ ..++..+.|+|
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~ 62 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 468999999999999999999999876643 5688888843 34555555554
No 232
>PLN02550 threonine dehydratase
Probab=89.95 E-value=5.3 Score=45.04 Aligned_cols=133 Identities=18% Similarity=0.312 Sum_probs=89.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
.+++.+.+.+-++||-|.+++.++..+ ||..+.--..... ..+.+.+. -+.+.+++|+..|++.= .++.|+++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 356889999999999999999999987 9998887653222 23444443 25678999999998853 688888886
Q ss_pred hhh--------------hhhheeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--C---CEEEEEEeCChhHHHHH
Q 011491 155 PHV--------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--E---HALTIEVTGDPGKMVAV 209 (484)
Q Consensus 155 ~~V--------------~RELaLiKV~~~~~~r~eI~~l~~~FrAk--IVDv----s--~---~sl~iE~TG~~~KIdaf 209 (484)
+.. .|| +|+.|..+ +......+.++.++.+ |-.. + . =.+=||+. +++++.|
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E-~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l 566 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDE-LLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF 566 (591)
T ss_pred hHHhhhhhheeccccccCce-EEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence 654 222 25666554 4555677777777662 2211 0 0 11336765 3777888
Q ss_pred HHHhccCC
Q 011491 210 QRNLSKFG 217 (484)
Q Consensus 210 i~~L~~fG 217 (484)
++.|+..|
T Consensus 567 ~~~l~~~g 574 (591)
T PLN02550 567 KSRANALG 574 (591)
T ss_pred HHHHHHcC
Confidence 88887766
No 233
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=89.84 E-value=1.9 Score=32.29 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=37.1
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
..+.||++.|+.+.+++.|.|++.++.. +..+++++.. ...+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence 4577999999999999999999999832 2457888864 334455555554
No 234
>PRK05007 PII uridylyl-transferase; Provisional
Probab=89.83 E-value=1 Score=52.54 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=49.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhccc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI 380 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----de~~ieql~kQL~KLi 380 (484)
-.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.--.-.|.+. +++..++|.+.|.+.+
T Consensus 702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999998887766444343444332 2345566777776654
No 235
>PLN02317 arogenate dehydratase
Probab=89.65 E-value=1.6 Score=46.63 Aligned_cols=67 Identities=13% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeCC--hhHHHHHHHHH
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSGT--ERVLRQVVEQL 139 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~----------------~~-iTIVV~gd--e~~veQI~kQL 139 (484)
+..|.+.++|+||.|.++...|+.||+|+..|---|.... .+ +-|-+.|. +..+++.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 5677777799999999999999999999999987775433 12 33334443 66688888888
Q ss_pred hcCcce
Q 011491 140 NKLVNV 145 (484)
Q Consensus 140 ~KLidV 145 (484)
.+.-.-
T Consensus 363 ~~~~~~ 368 (382)
T PLN02317 363 QEFATF 368 (382)
T ss_pred HHhcCe
Confidence 775543
No 236
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.04 E-value=6.2 Score=42.98 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=88.3
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHHhcCcceeEEEecCCchhh
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEPHV 157 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL~KLidVikV~dlt~~~~V 157 (484)
+.-.....+++|++.||.+.+++.|+|++-+..+.++.. +++++..++ ...+.+.+....+.. .+ .+
T Consensus 311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v-------~~ 379 (447)
T COG0527 311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV-------EV 379 (447)
T ss_pred EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------Ee
Confidence 444445556679999999999999999999988776655 888887544 223333333332332 22 25
Q ss_pred hhhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 158 ~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
++.+++|-+--.. .--.++++-...++-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus 380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH 441 (447)
T COG0527 380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH 441 (447)
T ss_pred eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence 6778888875433 34558899899999999999977788888778888887777765
No 237
>PRK08210 aspartate kinase I; Reviewed
Probab=88.59 E-value=3.2 Score=43.73 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=76.1
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhH
Q 011491 316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (484)
Q Consensus 316 tLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V 394 (484)
.+++.-.|. ||.++||.+.|.+.|+||+.++.+.. .+++++.. +..+++.+.|+++- + .-.+
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~ 335 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLG-------L--KPSV 335 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEE
Confidence 455554444 99999999999999999999977631 36677763 33566666666531 0 2234
Q ss_pred HHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 395 ERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 395 ~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.+.+++|.|--.. ..-..+++.....+-+|+..+....-+-+.=+.+..+..++.|.
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 5678888776432 22346777777778888876654444444445555555555554
No 238
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=88.57 E-value=1.2 Score=51.69 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=78.7
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhcccceEEEeccC
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----de~~ieql~kQL~KLidVi~V~dlt 389 (484)
-.+.|...|+||+|.+|+++|++.|+||.+=.+..+.+.-.--.-.|.+. +++.+++|.+.|.+.++-..
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~----- 752 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK----- 752 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence 48899999999999999999999999999988877655544443334332 23456677777776654211
Q ss_pred CchhHHHhhheeEEecCccchHHHHHHHHHcC--cEEE---EecCCEEEEEEeCC--HHHHHHHHHHhccCCc-EEEeec
Q 011491 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFR--ARAV---DVSDHTITLELTGD--LNKIIALQRLLEPYGI-CEVART 461 (484)
Q Consensus 390 ~~~~V~REL~LIKV~~~~~~r~eI~~la~ifr--akIV---Dvs~~si~iE~TG~--~~Kidafi~lL~pyGI-lEvaRT 461 (484)
....+ + + .+. + ...|. .+|. +.++++.+||+... +.=+-.+-..|..+|+ +..||=
T Consensus 753 --~~~~~---~-~--~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI 816 (854)
T PRK01759 753 --LKKLN---L-E--ENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI 816 (854)
T ss_pred --Ccchh---c-c--ccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence 00000 0 1 010 0 01121 1221 24567788888765 6677777788888886 666664
Q ss_pred c
Q 011491 462 G 462 (484)
Q Consensus 462 G 462 (484)
.
T Consensus 817 ~ 817 (854)
T PRK01759 817 T 817 (854)
T ss_pred c
Confidence 3
No 239
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.39 E-value=1.5 Score=36.80 Aligned_cols=40 Identities=10% Similarity=0.326 Sum_probs=32.2
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde 129 (484)
..+.||++.+|-..|++.|+||+-++.++ .-+++++..++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd 50 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK 50 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence 46789999999999999999999997522 34777777544
No 240
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=88.36 E-value=1.1 Score=33.02 Aligned_cols=53 Identities=30% Similarity=0.444 Sum_probs=39.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
..+++|++.++...|++.|.|+..++.+..+ .+++++++. ...+.+.+.|+|.
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~ 62 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE 62 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence 3478999999999999999999988775522 557777774 3456666666654
No 241
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=88.26 E-value=1.4 Score=51.54 Aligned_cols=66 Identities=8% Similarity=0.241 Sum_probs=48.5
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---C----ChhHHHHHHHHHhcCc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV 143 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~---g----de~~veQI~kQL~KLi 143 (484)
....|.|...|+||+|.+|+++|++.|.||.+-.+..+.+.-.=++.|. | ++...++|.+.|.+.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999987733222233332 2 2345677777776544
No 242
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.64 E-value=3 Score=44.56 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc---CcceeEEEecCCchhhhhhheeEEE
Q 011491 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL 166 (484)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K---LidVikV~dlt~~~~V~RELaLiKV 166 (484)
||++.||...|++.|+||+.++.+.++ .-++++++.++ .+...+.|.+ ...+-.+. +.+.+++|.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence 899999999999999999999744332 23777776433 4444444443 22332222 4677889988
Q ss_pred eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
... +.--.++++.....+-+|.-++....-+-++=+.+..+..++.|..
T Consensus 384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~ 437 (441)
T TIGR00657 384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN 437 (441)
T ss_pred EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence 432 3445588888888888888775444555555556666666776653
No 243
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=87.61 E-value=1.4 Score=35.33 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.5
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (484)
..|.||++.+|.+.++++|.||+-++.. .+ .++++++.+
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~ 47 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE 47 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence 3578999999999999999999999554 22 378888743
No 244
>PRK08639 threonine dehydratase; Validated
Probab=87.54 E-value=3.9 Score=43.62 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=61.5
Q ss_pred ceEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccC
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtg-lFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt 389 (484)
-+...+++...++||-|.++.. +++.++ ||..+.-......+..++.+++.. +.+.++++..+|++.= .++++++
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~ 410 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDIN 410 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECC
Confidence 3568999999999999999999 555555 999886654445556678888774 4468899999998864 4566777
Q ss_pred CchhHHH
Q 011491 390 HLPFAER 396 (484)
Q Consensus 390 ~~~~V~R 396 (484)
+.+.+..
T Consensus 411 ~~~~~~~ 417 (420)
T PRK08639 411 PNEPLYN 417 (420)
T ss_pred CCHHHHH
Confidence 7776654
No 245
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=87.48 E-value=4.7 Score=40.39 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=58.7
Q ss_pred ceEEEEEEEEcCchh--HHHHHHHHHhccCceeeeEeeeecCCCc--EEEE--EEeC-ChhHHHHHHHHHhcCcceeEEE
Q 011491 77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 77 ~~khtISilVeN~pG--VL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTI--VV~g-de~~veQI~kQL~KLidVikV~ 149 (484)
...|.+++.+.++++ +..++...+...+|.+.++.+.+.++++ .++. ...+ ++..+++++.+|...-.|.+|.
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 346788988888664 6999999999999999999998765554 3444 4443 5788999999999999999886
No 246
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=87.48 E-value=0.63 Score=40.57 Aligned_cols=46 Identities=30% Similarity=0.485 Sum_probs=38.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV 124 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIV 124 (484)
+++..|++.=.||||+.+.|++++++.|.||..+ +.|--.+++|+.
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldi--sQtvm~~~ftm~ 46 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDI--SQTVMDGFFTMI 46 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEH--HHHHHhhhceee
Confidence 4788999999999999999999999999999754 466556665554
No 247
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.40 E-value=1.7 Score=33.39 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.8
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
.++||++.|+...+++.|.|++.++.+..+ ..+.+++..++ .+.+++.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999999876633 45777887533 4444555544
No 248
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.35 E-value=2 Score=32.60 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=38.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL 142 (484)
..+.||++.++...+++.|.|++-++.+..+ ..+++++.. ...+++.+.|++.
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~--~~~~~~~~~Lh~~ 63 (66)
T cd04924 11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE--DDGWAAVKAVHDE 63 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH--HHHHHHHHHHHHH
Confidence 3467999999999999999999999876533 447777764 3345555555443
No 249
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=87.29 E-value=1.5 Score=38.93 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
+-|.+|..|..+-...|..+.+++.++....+ . ++|.+.|+=..+-+.+++|+++-.++.|++++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45889999999999999999999998654443 2 78899999999999999999999999999876
No 250
>PRK08526 threonine dehydratase; Provisional
Probab=87.28 E-value=2.7 Score=44.81 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=55.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL 379 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gde~~ieql~kQL~KL 379 (484)
+.+.+.+.+.|+||-|.+++.++++.|-||..+.-.... ..+-.++++++. -+.+.+++|...|++.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 568999999999999999999999999999998875533 336788888877 3567899999988653
No 251
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.15 E-value=2.3 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=37.6
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
+.+.||++.|+...+++.|.|++.++.+.++ ..+++++..++ .+...+.|+|
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~d--~~~~~~~lh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNED--ADKAVKAIYE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence 4568999999999999999999999876532 45778887533 3444444443
No 252
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=87.00 E-value=1.4 Score=35.07 Aligned_cols=46 Identities=30% Similarity=0.498 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~ 377 (484)
|.||++.|++..++.-|+||.-++ |+ .++.+.|+. +.+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~----~~~~ilV~~--~~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SE----ISISILVKE--EDLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ES----SEEEEEEEG--GGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Ee----eeEEEEEeH--HHHHHHHHHhc
Confidence 599999999999999999998777 33 457788873 35666666655
No 253
>PRK00907 hypothetical protein; Provisional
Probab=86.87 E-value=4.7 Score=35.13 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=63.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCc--eeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE 384 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGy--NIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~ 384 (484)
..+.|.|.-.+++++...|..++.+.+- +-.++++-++....+..+|+++. .+.++++.|-+.|.+.-.|.-
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKW 90 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 3589999999999999999999998754 56788889999999999999987 577899999999999888853
No 254
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=86.78 E-value=1.8 Score=31.92 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=37.7
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL 142 (484)
..+++|++.++...|++.|.|+..++.+.. ...++++++. ...+.+.+.|+|.
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~~ 62 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHEE 62 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHHH
Confidence 447899999999999999999998876542 2336667764 3345555555543
No 255
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=86.20 E-value=5.9 Score=43.14 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=85.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHH-HHHHHHHhcccceEEEeccCCchh
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESI-GKLVQLLHKLIDLHEVQDITHLPF 393 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~i-eql~kQL~KLidVi~V~dlt~~~~ 393 (484)
.-.....+++|++.||.+.+++.|+|++-+..+.++.. |++++++++ ... +.+.+....+.. +-.
T Consensus 312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~ 378 (447)
T COG0527 312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EVE 378 (447)
T ss_pred EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eEE
Confidence 33344456679999999999999999999988877665 899998654 222 222222222222 223
Q ss_pred HHHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 394 AERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 394 V~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+++.+++|-+--.. .--..+++-...++-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus 379 ~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH 441 (447)
T COG0527 379 VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH 441 (447)
T ss_pred eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence 45667887764332 22357888888999999999977788887777777777777664
No 256
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=86.16 E-value=4.9 Score=42.79 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=62.4
Q ss_pred eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccCC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtg-lFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
+...+++.+.++||-|.+++. +++.++ ||..+.-......+..++.+++.. +.+.+++|.+.|++.= .++.++++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 400 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE 400 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence 468999999999999999999 555555 999777665555677888888874 4578899999998863 46667887
Q ss_pred chhHHH
Q 011491 391 LPFAER 396 (484)
Q Consensus 391 ~~~V~R 396 (484)
.+.++.
T Consensus 401 ~~~~~~ 406 (409)
T TIGR02079 401 NDILYN 406 (409)
T ss_pred CHHHHH
Confidence 766654
No 257
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.85 E-value=2.4 Score=33.33 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=39.8
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
+.||++.|+...|++.|+||.-++-|.++. +++++++. +..++.++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence 468999999999999999999999888753 58888884 345666666665
No 258
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=85.63 E-value=2.3 Score=32.33 Aligned_cols=52 Identities=13% Similarity=0.295 Sum_probs=38.0
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
..+.||++.||...+++.|+|++.++-+..+ ..+++++..++ .++.++.|++
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh~ 62 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVHE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence 4578999999999999999999999775532 45888887433 4444555543
No 259
>PRK09034 aspartate kinase; Reviewed
Probab=85.52 E-value=12 Score=40.42 Aligned_cols=116 Identities=11% Similarity=0.194 Sum_probs=73.8
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--HH-HHHHHHHhcCcceeEEEecCCchhhhhhheeE
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--~v-eQI~kQL~KLidVikV~dlt~~~~V~RELaLi 164 (484)
.+||+++||.+.|++.|.||+-++ ....-++++++.++. .. ..+...|++-..+..| .+.+.+++|
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va~V 388 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLAII 388 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEEEE
Confidence 479999999999999999999983 222347888875432 11 5566666654443333 256779999
Q ss_pred EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491 165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.+-.. +.--..+++....++.+|.-++ ....-|-++=+.+..+..++.|.
T Consensus 389 sivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH 445 (454)
T PRK09034 389 MVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY 445 (454)
T ss_pred EEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence 88432 2344578888888888885553 22234444444455555555554
No 260
>PRK04374 PII uridylyl-transferase; Provisional
Probab=85.49 E-value=2.6 Score=49.30 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=46.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CC-hHHHHHHHHHHhcc
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GT-DESIGKLVQLLHKL 379 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd-e~~ieql~kQL~KL 379 (484)
..+.|+..|+||++.+|+|+|++.|+||.+-.+-.+.+.-.--.-.|.+ |. ++..+++.+.|.+.
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~ 758 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV 758 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998887765544333333333 21 33455555555543
No 261
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=85.18 E-value=2.9 Score=33.86 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=42.5
Q ss_pred eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 011491 163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI 218 (484)
Q Consensus 163 LiKV~~~--~~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI 218 (484)
++|+... ....+-|-++++.|+..+ ||- .-..+++|+.|++++++++++.|+..|+
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 5666554 456678999999997655 333 4467999999999999999999999984
No 262
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.80 E-value=2.4 Score=35.76 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=47.9
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcccceEEE
Q 011491 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 320 lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---e~~ieql~kQL~KLidVi~V 385 (484)
+..+..|.+.|+..+|.+.|.++|-+. .|+-.|+++++.+ ++..++|++.|++-.+.-++
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 357889999999999999999999763 3556699999966 55788889998886655444
No 263
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=84.75 E-value=3 Score=48.69 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHK 378 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---de~~ieql~kQL~K 378 (484)
..+|.|.+.|+||+|.+|+.+|.+.|++|.+--++.-.+ ..-.+-.|.+ | +++..+.|.++|.+
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge-rv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc-eEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence 468999999999999999999999999999977765443 3334444443 2 12333566665543
No 264
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=84.59 E-value=2.4 Score=43.72 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=105.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEe--CChhHHHHHHHHHhcCcceeEEE--
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVS--GTERVLRQVVEQLNKLVNVIKVE-- 149 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~--gde~~veQI~kQL~KLidVikV~-- 149 (484)
++.++|.+-..++||..++|++...+.|+||.....- +.. .++ |.+... +.....+++...+..+.+=....
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence 4678999999999999999999999999999987765 322 344 555554 33345666666666554411111
Q ss_pred ------------ecCCchhhhhhheeEEEeC---------CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHH
Q 011491 150 ------------DISNEPHVERELMLIKLNG---------DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVA 208 (484)
Q Consensus 150 ------------dlt~~~~V~RELaLiKV~~---------~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIda 208 (484)
-.+.+.+=-.+| |.|.+. =-.|-.+...+++.|+----.+.-+.-+ .++.=+.
T Consensus 84 ~~~~~~~~ri~i~VSK~~HCL~DL-L~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~ 157 (287)
T COG0788 84 LHDAAQRKRIAILVSKEDHCLGDL-LYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEAR 157 (287)
T ss_pred EeccccCceEEEEEechHHHHHHH-HHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHH
Confidence 112222222222 222111 1146678888888887655444332211 4667778
Q ss_pred HHHHhccCCcEEEeeccceeeecCcCCCCccccc-cc-------ccCCchhhhhccccccccccccc
Q 011491 209 VQRNLSKFGIKELARTGKIALRREKLGDTAPFWN-FS-------AASYPDLEEKKRTGIFIPETNQS 267 (484)
Q Consensus 209 fi~~L~~fGIlE~aRTG~iAl~Rg~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~ 267 (484)
.+++++.|| +-.+-|+|=.+-++..+-+ +. -.--|.+..+.|-.-...++++-
T Consensus 158 ~~~ll~~~~------~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKl 218 (287)
T COG0788 158 LLELLEEYG------ADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKL 218 (287)
T ss_pred HHHHHHHhC------CCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeE
Confidence 899999999 2345588887777765521 11 11246665555444445555553
No 265
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.41 E-value=3.1 Score=31.05 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=37.1
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
..+.||++.++...+++.|.|++.++.. + .+++++++. ...+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence 3577999999999999999999999742 2 558888874 334555555554
No 266
>PRK09084 aspartate kinase III; Validated
Probab=84.33 E-value=12 Score=40.37 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=75.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-------HHHHHHHHHhcccceEEEeccCCchhHH
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-------SIGKLVQLLHKLIDLHEVQDITHLPFAE 395 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~-------~ieql~kQL~KLidVi~V~dlt~~~~V~ 395 (484)
++||+++||...|.+.|+||+-++.+ + ..++++++.++. ..+.+.+.|+++-. + .+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~ss--e----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~ 381 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTS--E----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVE 381 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEecc--C----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEE
Confidence 68999999999999999999999843 2 468999986542 23566666664221 1 235
Q ss_pred HhhheeEEecCcc-ch----HHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 396 RELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 396 REL~LIKV~~~~~-~r----~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+.+++|.|--... .+ ..+++.....+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus 382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH 442 (448)
T PRK09084 382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH 442 (448)
T ss_pred CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence 6788888865432 22 34555444456777777677666666666666666666654
No 267
>PRK04998 hypothetical protein; Provisional
Probab=84.16 E-value=8.3 Score=32.85 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=60.0
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi 383 (484)
..|.+.+...+.++.++.|..+|.+..-.-+.++.-++....+..+|+.+. .+++++..|-+.|.+.-.|+
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 358999999999999999999997763333457778888899999999987 67889999999999988885
No 268
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=84.01 E-value=4.2 Score=29.15 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHH
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ 138 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQ 138 (484)
+.||.+.|+...+++.|+||+.++.+.. ...+++++..+ ..+++.+-
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~~ 58 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVKA 58 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHHH
Confidence 4799999999999999999999987764 23477777642 34444443
No 269
>PLN02551 aspartokinase
Probab=83.92 E-value=8.2 Score=42.80 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--------HHHHHHHHHhcccceEEEeccCCchhH
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHKLIDLHEVQDITHLPFA 394 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~--------~ieql~kQL~KLidVi~V~dlt~~~~V 394 (484)
++||+++||.+.|.+.|+||+-++.+ + ..++++++.++. .++++...|+++. .| .+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~---~V-------~v 441 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIA---VV-------NL 441 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC---eE-------EE
Confidence 68999999999999999999999643 2 458899986542 2333444444321 11 24
Q ss_pred HHhhheeEEecCccc----hHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhc
Q 011491 395 ERELILIKIAVNTAA----RRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 395 ~REL~LIKV~~~~~~----r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.+.+++|-|--.... -..+++.....+.+|.-++ ...+-|-+.=+.+..+..++.|.
T Consensus 442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH 504 (521)
T PLN02551 442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 504 (521)
T ss_pred eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHH
Confidence 466778777644212 1356666667777884444 55555555556666666666554
No 270
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.38 E-value=4 Score=32.09 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
+.+|++.|+...|++.|+||.-++-|.++. .++++++. +..++.++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~--~~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVND--SEAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeH--HHHHHHHHHHHH
Confidence 468999999999999999999999877632 48888875 334555555544
No 271
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=83.31 E-value=3.5 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL 376 (484)
+.||.+.++...+++.|+||+.++.+.. + .+++++++. +..+++.+-|
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l 59 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL 59 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence 4799999999999999999999988764 2 457777773 3455555443
No 272
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.10 E-value=7.7 Score=28.89 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=35.8
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
..+.||++.|+...+++.|.|++.++.. ...+++++.. ...+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH--HHHHHHHHHHHH
Confidence 4578999999999999999999999842 2447788764 233444444443
No 273
>PRK09084 aspartate kinase III; Validated
Probab=83.05 E-value=24 Score=38.27 Aligned_cols=113 Identities=15% Similarity=0.292 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-------HHHHHHHHHhcCcceeEEEecCCchhhhhh
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~-------~veQI~kQL~KLidVikV~dlt~~~~V~RE 160 (484)
++||+++||...|++.|+||+-++.++ .-++++++.++. ..+.+.+.|+++-. + .+.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~ 383 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG 383 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence 689999999999999999999998432 347888875542 23556666654211 1 24678
Q ss_pred heeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 161 LaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
+++|.|--.. .--..++......+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus 384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH 442 (448)
T PRK09084 384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH 442 (448)
T ss_pred eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence 9999996643 22334555554456677777677666666666666666666664
No 274
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=82.66 E-value=3.1 Score=33.69 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=42.3
Q ss_pred eeEEecC--ccchHHHHHHHHHcCcE-------EEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEE
Q 011491 400 LIKIAVN--TAARRDVLDIAKIFRAR-------AVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEV 458 (484)
Q Consensus 400 LIKV~~~--~~~r~eI~~la~ifrak-------IVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEv 458 (484)
++|+... ....+-|-++++.|+.. |-.+ .-..+++|+.|+.++++++++.|+..|+ .|+
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence 5666554 34456788888887654 3333 3456999999999999999999999995 453
No 275
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=82.38 E-value=7.1 Score=41.71 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc---ccceEEEeccCCchhHHHhhhee
Q 011491 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK---LIDLHEVQDITHLPFAERELILI 401 (484)
Q Consensus 325 pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K---LidVi~V~dlt~~~~V~REL~LI 401 (484)
||++.||...|.+.|+||+.++.+.++ ..++++++.++ .+...+.|.+ ...+..| .+.+.+++|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se----~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~V 381 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE----TSISFTVDKED--ADQAKTLLKSELNLSALSSV-------EVEKGLAKV 381 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC----ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceE-------EEcCCeEEE
Confidence 899999999999999999999754443 33788887432 4444444433 2233222 234567888
Q ss_pred EEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 402 KIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 402 KV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.|... +..-.++++.....+-.|.-++.....+-++=+.+..+..++.|.
T Consensus 382 svvG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh 436 (441)
T TIGR00657 382 SLVGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLH 436 (441)
T ss_pred EEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHH
Confidence 88432 222357888888888888877544444555555666666666664
No 276
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=82.16 E-value=8.9 Score=38.03 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=54.4
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEe
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~ 386 (484)
|.+.+..++. -+..+...|.+.++.+.++.....+++....+++.++ .+...+++..+|.++.+|.+|+
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 5555555443 3688889999999999999988776666666777777 4567889999999999999885
No 277
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=81.88 E-value=5.4 Score=35.34 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=53.6
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEE--EEEEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCI--TTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~t-e~~~iSRi--TIVV~gde~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
+-|.+|..|..+-...|..+.+++.++. ..+++.++ +|.+.|+-..+-+.+++|+++-.++.|++++=
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~l 121 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLSL 121 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeEE
Confidence 4589999999999999999999999854 34666664 55566999999999999999999999998863
No 278
>PRK09034 aspartate kinase; Reviewed
Probab=81.78 E-value=13 Score=40.36 Aligned_cols=116 Identities=8% Similarity=0.134 Sum_probs=73.1
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHH--H-HHHHHHHhcccceEEEeccCCchhHHHhhh
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES--I-GKLVQLLHKLIDLHEVQDITHLPFAERELI 399 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~--i-eql~kQL~KLidVi~V~dlt~~~~V~REL~ 399 (484)
.+||++.||.+.|++.|.||+.++ .+...++++++.++.. . ..+.+.|++-..+..| .+.+.++
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~------ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va 386 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP------SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLA 386 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc------CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEE
Confidence 368999999999999999999983 2235588999855321 1 5566666655443333 3455688
Q ss_pred eeEEecC-----ccchHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhc
Q 011491 400 LIKIAVN-----TAARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 400 LIKV~~~-----~~~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+|.+--. +..-..+++....++.+|.-++ .....|-++=+.+..+..++.|.
T Consensus 387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH 445 (454)
T PRK09034 387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY 445 (454)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence 8888422 1223578888888888885553 23244444444455555555554
No 279
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=81.46 E-value=4.3 Score=32.42 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=30.4
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g 127 (484)
..|.||++++|.+.+++.|.||+-++.. .+ -+++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence 4578999999999999999999999554 22 36777764
No 280
>PRK14434 acylphosphatase; Provisional
Probab=81.41 E-value=3.7 Score=35.38 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcC---cEEEEecCCEEEEEEeCCH-HHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR---ARAVDVSDHTITLELTGDL-NKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr---akIVDvs~~si~iE~TG~~-~Kidafi~lL~p 452 (484)
-|.-+.++|+.++ +.|-...+.++.+++.|+. +++++|++.|+.
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 3889999999999 9999999999999999997 699999999975
No 281
>PRK06291 aspartate kinase; Provisional
Probab=81.40 E-value=9.1 Score=41.47 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=76.7
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEE
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV 166 (484)
.+.||++.|+...|++.|+|++-++.+.++ .-++++++.+ ..++.++.|++...=. .-..=.+.+++++|.|
T Consensus 332 ~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isv 403 (465)
T PRK06291 332 VGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVAV 403 (465)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEEE
Confidence 378999999999999999999998866433 2377777643 2444444444422100 0011125667899988
Q ss_pred eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 011491 167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 167 ~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
--.. .--..++......+.+|.-++ ....-|-+.=+.+..+..++.|..
T Consensus 404 vG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~ 459 (465)
T PRK06291 404 VGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD 459 (465)
T ss_pred EcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence 7543 234467777777788886555 444555555566667777776653
No 282
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.38 E-value=5.7 Score=31.69 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=32.8
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG 364 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g 364 (484)
..+.||++.++...+++.|.|++.++.+..+ .+++++++.
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeH
Confidence 4578999999999999999999999887443 267788874
No 283
>PRK14434 acylphosphatase; Provisional
Probab=81.20 E-value=3.7 Score=35.34 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr---AkIVDvs~~sl~iE~TG~~-~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-...+.++.|++.|++ ++++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 45889999999999 9999999999999999997 699999999975
No 284
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=81.16 E-value=9.8 Score=41.89 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=61.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
+.+.+++..-++||-|.+++.+++.+ ||..+.--. ...+..++.+.+. .+.+.+++|+++|++.= .++.|+++.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~n 398 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDD 398 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCC
Confidence 47899999999999999999999984 998887765 3445677888877 35678999999998742 667888876
Q ss_pred hhH
Q 011491 392 PFA 394 (484)
Q Consensus 392 ~~V 394 (484)
+..
T Consensus 399 e~~ 401 (499)
T TIGR01124 399 ELA 401 (499)
T ss_pred HHH
Confidence 544
No 285
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=80.98 E-value=4.4 Score=32.22 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 324 ~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
+||++.|+...+++.|+|+..++.|+++ -+++++|+. +..++.++.|++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~--~~~~~av~~Lh~ 62 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDR--DDYDNAIKALHA 62 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEH--HHHHHHHHHHHH
Confidence 7999999999999999999998888764 357788873 456666666654
No 286
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=80.81 E-value=2.9 Score=33.34 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=33.2
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHh
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~ 140 (484)
|.||+++|++..++..|+||--++ ++. .+.+.|+. +.+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHhc
Confidence 599999999999999999998887 332 35666653 34556655554
No 287
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=80.80 E-value=26 Score=40.99 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=75.1
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccceEEEeccCCchhHHH
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDLHEVQDITHLPFAER 396 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~KLidVi~V~dlt~~~~V~R 396 (484)
.+.||++.||.+.|++.|.||+-++.+ + ..++++++..+ +.++++.++|+++-.|. + .+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~-~---------~~ 396 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSS--E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVK-I---------IV 396 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcC--C----CEEEEEEccccccchHHHHHHHHHHHhhcCcEE-E---------eC
Confidence 478999999999999999999988543 2 55888888543 45677777777543322 1 24
Q ss_pred hhheeEEecCcc-----chHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 397 ELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 397 EL~LIKV~~~~~-----~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.+++|-|--..- .-..+++.....+..++..+...+-|-+.=+.+..+..++.|.
T Consensus 397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH 456 (861)
T PRK08961 397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456 (861)
T ss_pred CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHH
Confidence 567777754321 1235565555567788888777666655555555555555554
No 288
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=80.63 E-value=15 Score=38.00 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=88.2
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-C--CeEEEEEEEeCChHHHHHHHHHHhcccc---eE-
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-E--GLSCITTVVPGTDESIGKLVQLLHKLID---LH- 383 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~--~iSRiTIVV~gde~~ieql~kQL~KLid---Vi- 383 (484)
.++.++|.+-..|+||+..+|++...++|.||....-- +.. . -+-|+.+-..+.....+++...+..+.+ .-
T Consensus 4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~ 82 (287)
T COG0788 4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDW 82 (287)
T ss_pred CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCcee
Confidence 34678999999999999999999999999999886665 221 2 2456666666554456666666555443 10
Q ss_pred EEe----------ccCCchhHHHhhh--------eeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeC--CHHHH
Q 011491 384 EVQ----------DITHLPFAERELI--------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTG--DLNKI 443 (484)
Q Consensus 384 ~V~----------dlt~~~~V~REL~--------LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG--~~~Ki 443 (484)
... -.+.+.+--.+|+ =+.|.+=..+-.+...+++.|+----.+. ++. .++.=
T Consensus 83 ~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip-------~~~~~k~e~E 155 (287)
T COG0788 83 RLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIP-------VTKENKAEAE 155 (287)
T ss_pred EEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeecc-------CCCCcchHHH
Confidence 000 0111222222221 01111112345567778888775443333 333 46777
Q ss_pred HHHHHHhccCCcEEEeecceeEeecCCCccc
Q 011491 444 IALQRLLEPYGICEVARTGRVALVRESGVDS 474 (484)
Q Consensus 444 dafi~lL~pyGIlEvaRTG~vAl~Rg~~~~~ 474 (484)
+.++++++.||+ -.+-|+|=.++.|
T Consensus 156 ~~~~~ll~~~~~------DlvVLARYMqILS 180 (287)
T COG0788 156 ARLLELLEEYGA------DLVVLARYMQILS 180 (287)
T ss_pred HHHHHHHHHhCC------CEEeehhhHhhCC
Confidence 788999999983 3344666555433
No 289
>PLN02551 aspartokinase
Probab=80.62 E-value=22 Score=39.52 Aligned_cols=114 Identities=17% Similarity=0.279 Sum_probs=73.1
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--------HHHHHHHHHhcCcceeEEEecCCchhhhh
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVER 159 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--------~veQI~kQL~KLidVikV~dlt~~~~V~R 159 (484)
++||+++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|+++ ..| .+.+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~~ 443 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLLQ 443 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEeC
Confidence 68999999999999999999999643 2 347888876542 233344444432 112 2567
Q ss_pred hheeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 011491 160 ELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 160 ELaLiKV~~~~~~----r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.+++|-|--.... -..++......+.+|.-++ ...+-|-+.=+.+..+..++.|..
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~ 505 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence 7888888654222 2356666677777885554 455555555566666666666654
No 290
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=80.43 E-value=6.3 Score=30.73 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=35.0
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
.+.||++.|+...+++.|+|+...+- .+..+.++++. +..+++++.|++
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~--~~~~~av~~Lh~ 60 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSE--DDVKEAVNALHE 60 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcH--HHHHHHHHHHHH
Confidence 47899999999999999999964442 23348888864 344555565554
No 291
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=80.24 E-value=4 Score=31.86 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=36.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
.+.||++.|+...+.+.|+|+...+- + -.++.++++. +..++.++.|++-
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~--S----e~~is~~v~~--~~~~~av~~Lh~~ 61 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD--S----HTTISCLVSE--DDVKEAVNALHEA 61 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc--C----ccEEEEEEcH--HHHHHHHHHHHHH
Confidence 47899999999999999999974442 1 2367788873 4566677766654
No 292
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=79.64 E-value=26 Score=41.00 Aligned_cols=116 Identities=14% Similarity=0.225 Sum_probs=77.1
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHHhcCcceeEEEecCCchhhhhh
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL~KLidVikV~dlt~~~~V~RE 160 (484)
+.+++|+++||.+.|++.|.||+-++.+ +.-++++++..+ +.++.+.++|.++-.| + +.+.
T Consensus 332 ~~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i-~---------~~~~ 397 (861)
T PRK08961 332 MWQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRV-K---------IIVP 397 (861)
T ss_pred ccccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcE-E---------EeCC
Confidence 3478999999999999999999988532 234777777543 4566777777653222 1 3456
Q ss_pred heeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
+++|-|--.. ..-..++......+..++-.+...+-|-+.=+.+..+..++.|..
T Consensus 398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~ 457 (861)
T PRK08961 398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA 457 (861)
T ss_pred eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence 7888875543 233456666665678888887776666665566666666666553
No 293
>PRK09181 aspartate kinase; Validated
Probab=78.91 E-value=15 Score=40.28 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhHHHhhheeE
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (484)
+.||++.||.+.|.+.|.||+.+.-+ + ..++++++.+.+.++++.+.|++...-.++. ..++++|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss--~----~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~--------~~~~a~Vs 406 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATN--A----NTITHYLWGSLKTLKRVIAELEKRYPNAEVT--------VRKVAIVS 406 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEec--C----cEEEEEEcCChHHHHHHHHHHHHhcCCceEE--------ECCceEEE
Confidence 67999999999999999999976544 2 5689999866445678888888755422221 25678887
Q ss_pred EecCccch----HHHHHHHHHcCcEEEEecCC--EEEEEEeCCHHHHHHHHHHh
Q 011491 403 IAVNTAAR----RDVLDIAKIFRARAVDVSDH--TITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 403 V~~~~~~r----~eI~~la~ifrakIVDvs~~--si~iE~TG~~~Kidafi~lL 450 (484)
|--..-.+ ..+++.....+-+|.-++.. .+-|-+.=+.+..+..++.|
T Consensus 407 vVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~l 460 (475)
T PRK09181 407 AIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICAL 460 (475)
T ss_pred EeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHH
Confidence 75443322 35666667777888555444 34444444444444444444
No 294
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.89 E-value=5.7 Score=33.49 Aligned_cols=59 Identities=10% Similarity=0.318 Sum_probs=45.1
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC---hhHHHHHHHHHhcCcceeE
Q 011491 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIK 147 (484)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd---e~~veQI~kQL~KLidVik 147 (484)
+..++.|.+.|+..+|.+.|.++|-+.-| ..+ |+|+++.+ +..++.|++.|.+-++.=.
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMPSG---IDD-ISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeecCC---Ccc-EEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 35789999999999999999999977533 222 89999866 4477888888877555433
No 295
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=78.23 E-value=10 Score=32.15 Aligned_cols=55 Identities=24% Similarity=0.494 Sum_probs=38.1
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----e~~ieql~kQL 376 (484)
+...|.|..+||||+ -|.+-..+.||+ |+++.+|. .+++.+.++ ++.++++.++|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-------~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-------YIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-------EEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-------EEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 467899999999996 577788899999 99999986 477777766 34555555555
No 296
>PRK00341 hypothetical protein; Provisional
Probab=77.87 E-value=16 Score=31.56 Aligned_cols=69 Identities=9% Similarity=0.237 Sum_probs=60.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCcee--eeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNI--QSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNI--eSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi 383 (484)
.+.+.|.-.+.+++.+.|..++.|.. .. .++++-++....+..+|+.+. .++++++.|-+.|.+.-.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999998664 54 567778899999999999987 67889999999999988885
No 297
>PRK08526 threonine dehydratase; Provisional
Probab=77.71 E-value=10 Score=40.44 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=50.7
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC---c--EEEEEEe-CChhHHHHHHHHHhcC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---A--LFTIVVS-GTERVLRQVVEQLNKL 142 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~---~--~iTIVV~-gde~~veQI~kQL~KL 142 (484)
+.+.+.+.+.++||-|.+++.++++.|-||..+.-...... + .++++++ -+.+.+++|...|.+.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999999999887543222 2 3566665 2456788888888553
No 298
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.29 E-value=6.2 Score=46.09 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=37.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK 118 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~ 118 (484)
..+++++.+...|+||.|++++++|+.-|.+|.|..+..-...
T Consensus 788 ~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GEr 830 (867)
T COG2844 788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGER 830 (867)
T ss_pred CCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccccc
Confidence 3468899999999999999999999999999999887654433
No 299
>PRK14426 acylphosphatase; Provisional
Probab=77.17 E-value=6.5 Score=33.72 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|..+.++|..++ +.|-...+.++.+++.|++++|++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 56889999999887 6677778889999999999999999999975
No 300
>PRK09224 threonine dehydratase; Reviewed
Probab=77.07 E-value=15 Score=40.31 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=59.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEEeccCC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
+...+++...++||-|.+++.+++ +-||..+.--.. ..+..++.+.+.- .++.+++|++.|++.= .++.++++
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 468999999999999999999999 689988876653 4456677777763 3345999999997753 57778887
Q ss_pred chhH
Q 011491 391 LPFA 394 (484)
Q Consensus 391 ~~~V 394 (484)
.+..
T Consensus 402 ne~~ 405 (504)
T PRK09224 402 DELA 405 (504)
T ss_pred CHHH
Confidence 7654
No 301
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=77.03 E-value=10 Score=32.07 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=37.8
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhHHHHHHHHH
Q 011491 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (484)
Q Consensus 80 htISilVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----e~~veQI~kQL 139 (484)
+...|.|..+||||. -|.+-..+.||+ |+++.+|. .+++.+.++ ++.++++.++|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-----~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-----YIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-----EEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-----EEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 457889999999995 577788899999 99998875 578888876 34455555554
No 302
>PRK14426 acylphosphatase; Provisional
Probab=76.59 E-value=7.3 Score=33.43 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=39.6
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhccC
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~py 453 (484)
-|..+.++|..++ |.|-...++++.+++.|+++++++|++.|+.-
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 65 (92)
T PRK14426 19 FRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKEG 65 (92)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhcC
Confidence 3889999999876 67888888899999999999999999999753
No 303
>PRK09181 aspartate kinase; Validated
Probab=76.49 E-value=37 Score=37.38 Aligned_cols=115 Identities=16% Similarity=0.174 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEEe
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV~ 167 (484)
+.||++.||.+.|.+.|+||+.++-+. .-+++++..+...++++.+.|++...--++. .+++++|-|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~----~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~--------~~~~a~VsvV 408 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA----NTITHYLWGSLKTLKRVIAELEKRYPNAEVT--------VRKVAIVSAI 408 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC----cEEEEEEcCChHHHHHHHHHHHHhcCCceEE--------ECCceEEEEe
Confidence 679999999999999999999765432 3477777765345677777777654322221 2668888886
Q ss_pred CCCCCH----HHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHhc
Q 011491 168 GDTSTW----PEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 168 ~~~~~r----~eI~~l~~~FrAkIVDvs~~--sl~iE~TG~~~KIdafi~~L~ 214 (484)
-..-.+ ..++......+-+|.-++.. .+-|-+.=+.+..+..++.|.
T Consensus 409 G~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 409 GSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred CCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 554322 35666667778888655554 344444444455555555443
No 304
>PRK06291 aspartate kinase; Provisional
Probab=76.34 E-value=10 Score=41.07 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=76.2
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhHHHhhheeE
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (484)
+.||++.|+...|++.|+||+-++.+.++ .+++++++.+ ..++.++.|++...=. .-..=.+..++++|.
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse----~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is 402 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE----SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVA 402 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence 78999999999999999999998876544 5688888843 3445555555432100 001113445688888
Q ss_pred EecCcc-----chHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhc
Q 011491 403 IAVNTA-----ARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 403 V~~~~~-----~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|--... .-..++......+.+|.-++ ....-|-+.=+.+..+..++.|.
T Consensus 403 vvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh 458 (465)
T PRK06291 403 VVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLH 458 (465)
T ss_pred EEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHH
Confidence 865432 12467777777777885554 44455555556666666666654
No 305
>PRK08639 threonine dehydratase; Validated
Probab=76.09 E-value=18 Score=38.59 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=55.5
Q ss_pred eEEEEEEEEcCchhHHHHHHH-HHhccCceeeeEeeeecCCC--cEEEEEEeC-ChhHHHHHHHHHhcCcceeEEEecCC
Q 011491 78 KRHTISVFVGDESGIINRIAG-VFARRGYNIESLAVGLNVDK--ALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN 153 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIag-LFsRRGyNIeSLtVg~Ted~--~~iTIVV~g-de~~veQI~kQL~KLidVikV~dlt~ 153 (484)
+...+++...++||-|.+++. +++.++ ||..+.--...+. +.+.++++. +.+.++++..+|++.= .+++++++
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 567999999999999999999 555455 9998865432222 335555553 3467899999998854 45666677
Q ss_pred chhhhh
Q 011491 154 EPHVER 159 (484)
Q Consensus 154 ~~~V~R 159 (484)
.+.+..
T Consensus 412 ~~~~~~ 417 (420)
T PRK08639 412 NEPLYN 417 (420)
T ss_pred CHHHHH
Confidence 665543
No 306
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=74.69 E-value=9.3 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
+||++.|+...+++.|+|+..++.|.++ -.++++|+. +..++.++.|++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~Lh~ 62 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKALHA 62 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHHHH
Confidence 7899999999999999999988877652 247777763 345555555543
No 307
>PRK14429 acylphosphatase; Provisional
Probab=74.47 E-value=9.4 Score=32.56 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-..++.++.+++.|+++++++|++.|+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 3788999999876 7788889999999999999999999999974
No 308
>PRK14429 acylphosphatase; Provisional
Probab=74.32 E-value=8.9 Score=32.70 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-..++.++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 16 GCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 45888999999887 6788888889999999999999999999984
No 309
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=74.15 E-value=21 Score=35.40 Aligned_cols=68 Identities=10% Similarity=0.174 Sum_probs=51.2
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEE--EEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~i--TIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
.|.+.+..++. -+..+...|.+.++.|.++.....+++..+ ++.+. .+...+++..+|.++-+|.+|+
T Consensus 144 ~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 144 HYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred cEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 35566665544 368888999999999999998766655544 44455 3567889999999999998885
No 310
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=74.02 E-value=8.4 Score=34.31 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccce
Q 011491 325 PGVLNIVTGVISRRG--YNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 325 pGVL~RVtglFsRRG--yNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidV 382 (484)
.|+|+|+..+.-..| |.|..+.||.+.+ +.|.-.+.|. .|++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~-d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKD-DTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTT-S-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCC-CceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999999877766 8999999998643 3444444444 3778899999999887655
No 311
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=73.38 E-value=20 Score=39.57 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=75.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~~ 155 (484)
++..+++..-++||.|.+++.+++.+ ||..++--..... ..+.+.+. .+.+.+++|+++|++. =.++.|+++.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~ne 399 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDDE 399 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCCH
Confidence 57899999999999999999999974 9998887653322 33545444 2467899999999874 36677777654
Q ss_pred hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEE-EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKV-VDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkI-VDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
... ...=.-| +++- ....+.-+-+|+-=.|+-+..|++.|.|
T Consensus 400 ~~k-~h~r~~~-----------------g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~ 442 (499)
T TIGR01124 400 LAK-LHVRYMV-----------------GGRPPHVENERLYSFEFPERPGALLRFLNTLQG 442 (499)
T ss_pred HHH-HHHHhcc-----------------CCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC
Confidence 221 1100001 1111 0111344667777777777777777766
No 312
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=73.05 E-value=7.4 Score=32.73 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=38.3
Q ss_pred hHHHHHHHHHc--CcEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIF--RARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~if--rakIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..+ .+.|-...++++.+++.|+++++++|++.|+.
T Consensus 20 R~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 20 RPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 78899999988 57788889999999999999999999999985
No 313
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=72.83 E-value=38 Score=39.72 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=79.7
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhHHHhhheeE
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIK 402 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LIK 402 (484)
+.||++.||.+.|.+.|+|++-++.+.++. .+.++++. ...+.+.+.|+++-.. ..=.+.+++++|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~----sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~Vs 395 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ----LLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVA 395 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc----EEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEE
Confidence 668999999999999999999987664432 46666662 3566666777765211 2223567888888
Q ss_pred EecCcc-----chHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 403 IAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 403 V~~~~~-----~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|--..- .-..+++.....+-+++..+...+-|-+.=+.+..+..++.|.
T Consensus 396 vVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH 449 (810)
T PRK09466 396 LVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLH 449 (810)
T ss_pred EeCCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHH
Confidence 865432 1246777777778999999888777766666666665555554
No 314
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=72.67 E-value=25 Score=37.58 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeC-ChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~g-de~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
+...+++.+-++||-|.+++.+....+-||..+.--..... +.+.+.+.. +.+.++++.+.|++.= .++.++++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~ 401 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINEN 401 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCC
Confidence 46899999999999999999944444449997765543222 345555542 3467889999998753 466677776
Q ss_pred hhhhh
Q 011491 155 PHVER 159 (484)
Q Consensus 155 ~~V~R 159 (484)
+.+..
T Consensus 402 ~~~~~ 406 (409)
T TIGR02079 402 DILYN 406 (409)
T ss_pred HHHHH
Confidence 65543
No 315
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=72.55 E-value=7.6 Score=32.67 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 35888999999884 6788889999999999999999999999985
No 316
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=72.34 E-value=51 Score=38.69 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEEe
Q 011491 88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN 167 (484)
Q Consensus 88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV~ 167 (484)
+.||++.||.+.|.+.|+|++-++.+.++ .-+.+++.. ...+.+.+.|+++-.. ..=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~--~sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDR--QLLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCC--cEEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence 66899999999999999999998866332 235555542 2456666667665211 222367889999986
Q ss_pred CCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 168 GDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 168 ~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-.. .--..++......+-+++..+...+-|-+.=+.+..+..++.|..
T Consensus 398 G~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~ 450 (810)
T PRK09466 398 GAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 (810)
T ss_pred CCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence 654 223467777777899999999888888777777777777777665
No 317
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=72.14 E-value=13 Score=29.66 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=31.8
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g 127 (484)
..+.+|++.++...|++.|.|++.++.+..+ ..+++++..
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence 4578999999999999999999999877332 246677764
No 318
>PRK14428 acylphosphatase; Provisional
Probab=72.05 E-value=12 Score=32.81 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+++.+++|++.|+.
T Consensus 23 FR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 23 FRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 3888999999876 6788888899999999999999999999973
No 319
>PRK09224 threonine dehydratase; Reviewed
Probab=71.74 E-value=20 Score=39.43 Aligned_cols=121 Identities=15% Similarity=0.235 Sum_probs=78.9
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEE--EeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIV--V~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
++..+++..-++||-|.+++.+++ +-||..++--.... ...+.+. +.+.+..+++|++.|++.= .++.++++.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~n 402 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDD 402 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCC
Confidence 578999999999999999999999 68999887655322 2334444 4444455899999997743 577788776
Q ss_pred hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEE-EEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEE
Q 011491 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKV-VDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKE 220 (484)
Q Consensus 155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkI-VDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlE 220 (484)
+.... ..=.-| +++- ....+..+.+|+-=.|+-+..|++.|.| ..|-.
T Consensus 403 e~~k~-h~r~~~-----------------g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~~~~~It~ 452 (504)
T PRK09224 403 ELAKL-HVRYMV-----------------GGRPPKPLDERLYRFEFPERPGALLKFLSTLGTHWNISL 452 (504)
T ss_pred HHHHH-HHHhcc-----------------CCCCCCCCceEEEEEeCCCCCCHHHHHHHhcCCCCeeEE
Confidence 53221 100001 1111 0112455777887888888888888877 55543
No 320
>PRK14428 acylphosphatase; Provisional
Probab=71.47 E-value=12 Score=32.81 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|+++.+++|++.|+.
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 46889999999887 6677888889999999999999999999973
No 321
>PRK14420 acylphosphatase; Provisional
Probab=71.32 E-value=10 Score=32.24 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 16 GFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998877 6677778888999999999999999999985
No 322
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=71.31 E-value=19 Score=30.05 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=60.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccC--ceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRG--YNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRG--yNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
..|++.+...|.++..+.|..+|.+.- ++-..+...++-...+..+|+.+. .+.+++..+-+.|.+.-.|.=|
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 469999999999999999999999963 445666777888899999999887 6888999999999998887643
No 323
>PRK14420 acylphosphatase; Provisional
Probab=70.93 E-value=11 Score=31.97 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 3788899998876 6677788889999999999999999999974
No 324
>PRK14445 acylphosphatase; Provisional
Probab=70.89 E-value=11 Score=32.16 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+.+++++|++.|+.
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 19 FRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred ChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 3788999999876 7788889999999999999999999999973
No 325
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=70.76 E-value=21 Score=31.04 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCc---E--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCC
Q 011491 91 GIINRIAGVFARRGYNIESLAVGLNVDKA---L--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (484)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~---~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~ 153 (484)
.+..|+..+....|-+|.|..+-+....+ + +++.+.|+-..+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 57899999999999999999999855443 2 677788999999999999999999999998873
No 326
>PRK14449 acylphosphatase; Provisional
Probab=70.04 E-value=14 Score=31.60 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...++++.+++.|+.+++++|++.|+.
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 3788999998776 6677888889999999999999999999985
No 327
>PRK14445 acylphosphatase; Provisional
Probab=69.69 E-value=12 Score=32.01 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|=...+.++.+++.|+++++++|++.|+.
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998877 6788888899999999999999999999974
No 328
>PRK14436 acylphosphatase; Provisional
Probab=69.60 E-value=14 Score=31.80 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 19 FR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 19 FRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 3788899998766 7788889999999999999999999999973
No 329
>PRK14449 acylphosphatase; Provisional
Probab=69.12 E-value=14 Score=31.53 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.|++.|+++++++|++.|+.
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999998887 5677777789999999999999999999985
No 330
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=68.99 E-value=19 Score=29.93 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCc
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV 143 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLi 143 (484)
.+|.-.+|..+++|.+.+|-+- +-+.+-+|+.+.++.+.++.+.+.|+|..
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~ 64 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRF 64 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhC
Confidence 4889999999999999999765 44566799999999999999999998865
No 331
>PRK14422 acylphosphatase; Provisional
Probab=68.79 E-value=14 Score=31.89 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...++++.+++-|+.++|++|++.|+.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 21 FRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 3888999999876 7788889999999999999999999999974
No 332
>PRK14422 acylphosphatase; Provisional
Probab=68.30 E-value=13 Score=31.95 Aligned_cols=45 Identities=4% Similarity=-0.104 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|=...+.++.+++-|+.++|++|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46889999999987 6678888889999999999999999999974
No 333
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.03 E-value=17 Score=28.12 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=36.5
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.+.||++.|+...+++ +||.-++-|.++ .+++++++.+ ..+++++-|+|
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s~----~~is~~V~~~--~~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGASN----HNLCFLVKEE--DKDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecCc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 3689999999999964 788877777653 3588888743 47777777765
No 334
>PRK14442 acylphosphatase; Provisional
Probab=67.63 E-value=14 Score=31.69 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|..+.++|+.++ +.|-...+.++.+++.|+.++++.|++.|+.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 19 FRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 3788999999876 7788889999999999999999999999984
No 335
>PRK14436 acylphosphatase; Provisional
Probab=67.51 E-value=15 Score=31.50 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 46888899998876 7788888889999999999999999999974
No 336
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.26 E-value=17 Score=28.47 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.+.||++.|+...+.+- ||.-+..+.++ .+++++++. +..++.++.|++
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s~----~~is~vv~~--~d~~~av~~LH~ 59 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAAND----LNLTFVVDE--DQADGLCARLHF 59 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCCC----CeEEEEEeH--HHHHHHHHHHHH
Confidence 47899999999999885 45555566543 368888884 456667766654
No 337
>PRK14444 acylphosphatase; Provisional
Probab=67.19 E-value=16 Score=31.31 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=38.8
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
-|.-+.++|..++ +.|-...+.++.+++.|++++++.|++.|+
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 3788999998766 788888999999999999999999999997
No 338
>PRK14442 acylphosphatase; Provisional
Probab=66.90 E-value=14 Score=31.70 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999999887 6788888889999999999999999999984
No 339
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=66.64 E-value=35 Score=29.13 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=56.5
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccC
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt 389 (484)
...++.+++..-.+||.|-+....+.-+. ||.-++=--+.. +..++-+-+.- +.+.++++.++|+++= ..+.|+|
T Consensus 7 ~~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~-~~a~vlvgi~v~~~~~~~~l~~~L~~~g--y~~~dls 82 (91)
T PF00585_consen 7 EGREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGD-DFARVLVGIEVPDAEDLEELIERLKALG--YPYEDLS 82 (91)
T ss_dssp H--EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTT-SCSEEEEEEE-SSTHHHHHHHHHHTSSS---EEECTT
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCC-CeeeEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECC
Confidence 34578999999999999999999997765 687777755544 56666666652 3455899999999984 7788999
Q ss_pred CchhHH
Q 011491 390 HLPFAE 395 (484)
Q Consensus 390 ~~~~V~ 395 (484)
+.+...
T Consensus 83 ~ne~~k 88 (91)
T PF00585_consen 83 DNELAK 88 (91)
T ss_dssp T-HHHH
T ss_pred CCHHHH
Confidence 877553
No 340
>PRK14435 acylphosphatase; Provisional
Probab=66.59 E-value=15 Score=31.50 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888999998886 5567777788999999999999999999984
No 341
>PRK14435 acylphosphatase; Provisional
Probab=66.40 E-value=16 Score=31.34 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ |-|-...+.++.+++.|+++++++|++.|+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 3788899998776 6677778889999999999999999999984
No 342
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=66.20 E-value=29 Score=40.08 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=38.5
Q ss_pred EEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe
Q 011491 80 HTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS 126 (484)
Q Consensus 80 htISilV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~ 126 (484)
+.+++.. -|++|.|.|++|+.+-.|.+|.|-.+.. +....-..+|.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~ 593 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVR 593 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEe
Confidence 7899999 9999999999999999999999999877 44445455544
No 343
>PRK14427 acylphosphatase; Provisional
Probab=66.19 E-value=17 Score=31.33 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+.++|++|++.|+.
T Consensus 21 FR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 21 FRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 3788999999876 7788889999999999999999999999974
No 344
>PRK14433 acylphosphatase; Provisional
Probab=66.13 E-value=16 Score=31.09 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=39.0
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+++.+++|++.|+.
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 3788889998765 7788889999999999999999999999984
No 345
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=66.12 E-value=36 Score=29.55 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEE--EEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491 326 GVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITT--VVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 326 GVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTI--VV~gde~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
.+..|+..+....|-+|.|..+-+... .++.+|.+ .+.|+-+.+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 578999999999999999999987443 45555554 456999999999999999999999988863
No 346
>PRK14433 acylphosphatase; Provisional
Probab=65.94 E-value=16 Score=31.19 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 46888899998876 6788888899999999999999999999984
No 347
>PRK14439 acylphosphatase; Provisional
Probab=65.81 E-value=16 Score=35.20 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEPYG 454 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~pyG 454 (484)
-|.-+.++|+.++ |.|-...++++.+++.|+.++|+.|++.|+..|
T Consensus 90 FR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 90 FRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 3788889999877 678888899999999999999999999998755
No 348
>PRK14447 acylphosphatase; Provisional
Probab=65.74 E-value=17 Score=31.33 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred chHHHHHHHHHcC--cEEEEecCC-EEEEEEeCCHHHHHHHHHHhc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDH-TITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~-si~iE~TG~~~Kidafi~lL~ 451 (484)
-|.-+.++|+.++ |.|-...+. ++.+++.|+++++++|++.|+
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 3788999999877 566677777 699999999999999999997
No 349
>PRK14421 acylphosphatase; Provisional
Probab=65.68 E-value=19 Score=31.69 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+.+++++|++.|+.
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 3788889998775 6788888899999999999999999999973
No 350
>PRK14423 acylphosphatase; Provisional
Probab=65.29 E-value=18 Score=31.01 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..++ +.|-...+.++.+++.|++++++.|++.|+.
T Consensus 21 R~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 21 RASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred hHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 788999998876 7788889999999999999999999999973
No 351
>PRK14421 acylphosphatase; Provisional
Probab=65.25 E-value=18 Score=31.72 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|+++++++|++.|+.
T Consensus 18 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 18 GYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 46888999998876 6788888889999999999999999999974
No 352
>PRK14427 acylphosphatase; Provisional
Probab=65.19 E-value=17 Score=31.32 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|+.++|++|++.|+.
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 46888999999877 6788888999999999999999999999984
No 353
>PRK14451 acylphosphatase; Provisional
Probab=64.88 E-value=18 Score=30.97 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=38.3
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..++ +.|-...+.++.+++.|+++++++|++.|+.
T Consensus 19 R~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 19 RASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred hHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 778889998776 6788888899999999999999999999984
No 354
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=64.64 E-value=65 Score=27.12 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcccceEEEeccCCchhHHHhh-------heeEEecCccch----HHHHHHHHHcCcEEEEecCCEEEE
Q 011491 367 ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL-------ILIKIAVNTAAR----RDVLDIAKIFRARAVDVSDHTITL 434 (484)
Q Consensus 367 ~~ieql~kQL~KLidVi~V~dlt~~~~V~REL-------~LIKV~~~~~~r----~eI~~la~ifrakIVDvs~~si~i 434 (484)
++...|.++-++|-.++.|=--.=.+.+-.|+ -||||++....+ .-..+|++..+|.+|++-.+++++
T Consensus 4 ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 4 KERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp HHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 44555666666666665554333333333332 277777655333 335568899999999999998876
No 355
>PRK14430 acylphosphatase; Provisional
Probab=64.48 E-value=19 Score=31.05 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 3788899999876 6788888889999999999999999999965
No 356
>PRK14444 acylphosphatase; Provisional
Probab=64.38 E-value=19 Score=30.89 Aligned_cols=45 Identities=7% Similarity=-0.140 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|=...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 46888999998876 7788889999999999999999999999973
No 357
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=64.33 E-value=22 Score=31.76 Aligned_cols=56 Identities=30% Similarity=0.526 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEeC-ChhHHHHHHHHHhcCcce
Q 011491 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVSG-TERVLRQVVEQLNKLVNV 145 (484)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Te-d~~~iTIVV~g-de~~veQI~kQL~KLidV 145 (484)
.|+|+|+-.+.-..| |.|..+.||.+. +++...|.|.+ |++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999999887776 889999999765 44666666664 578899999999888665
No 358
>PRK14451 acylphosphatase; Provisional
Probab=64.25 E-value=18 Score=31.00 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 45888888998876 5677788889999999999999999999984
No 359
>PRK14441 acylphosphatase; Provisional
Probab=64.20 E-value=19 Score=31.01 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++.|+.+.++.|++.|+.
T Consensus 20 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 20 FRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred chHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 3888999999876 7788889999999999999999999999973
No 360
>PRK14423 acylphosphatase; Provisional
Probab=64.13 E-value=19 Score=30.91 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.|++.|++++|+.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 46888999998876 7788889999999999999999999999974
No 361
>PRK14439 acylphosphatase; Provisional
Probab=64.08 E-value=17 Score=35.00 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG 217 (484)
.-|.-+.++|+.++ +.|-...+.++.|++.|++++|+.|++.|+..|
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 57889999999987 667788889999999999999999999998754
No 362
>PRK14430 acylphosphatase; Provisional
Probab=63.83 E-value=19 Score=31.03 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 18 GYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 45888899998887 6677888889999999999999999999975
No 363
>PRK14438 acylphosphatase; Provisional
Probab=63.42 E-value=20 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 18 FRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 3788889998876 7788889999999999999999999999973
No 364
>PRK14446 acylphosphatase; Provisional
Probab=63.33 E-value=15 Score=31.62 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|+.++ +.|-...+.++.+++.|+++.++.|++.|+.
T Consensus 18 R~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 18 RASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred hHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 788899998776 6788889999999999999999999999983
No 365
>PRK14447 acylphosphatase; Provisional
Probab=63.25 E-value=20 Score=30.98 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCC-EEEEEEeCChhHHHHHHHHhc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEH-ALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~-sl~iE~TG~~~KIdafi~~L~ 214 (484)
.-|.-+.++|+.++ +.|-...+. ++.+++.|++++|++|++.|+
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 18 FFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred cchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 46888999999987 556666677 699999999999999999997
No 366
>PRK14425 acylphosphatase; Provisional
Probab=63.00 E-value=22 Score=30.68 Aligned_cols=44 Identities=20% Similarity=0.122 Sum_probs=39.0
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ |.|-...+.++.+++-|+.+++++|++.|+.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 21 FRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 3788899998776 6788888899999999999999999999985
No 367
>PRK14432 acylphosphatase; Provisional
Probab=62.51 E-value=20 Score=30.90 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEe-CChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVT-GDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~T-G~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++. |++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 45788888888876 7788888889999997 999999999999975
No 368
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.50 E-value=1.4e+02 Score=29.61 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee--cCC-CcEEEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVD-KALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~--Ted-~~~iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
.+.+.+++-|+|--....+|..+-.+.|-.|++-.... ..+ ....+|++.-..+.++..+.+|.++=.|..-.
T Consensus 49 i~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~ 124 (262)
T PF14257_consen 49 IKTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRN 124 (262)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeee
Confidence 45789999999999999999999999998899998862 222 22344444445678999999999987765544
No 369
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=62.41 E-value=50 Score=27.79 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.7
Q ss_pred eEEEeCCCCC----HHHHHHHHHhcCcEEEEecCCEEEE
Q 011491 163 LIKLNGDTST----WPEIMWLVDIFRAKVVDISEHALTI 197 (484)
Q Consensus 163 LiKV~~~~~~----r~eI~~l~~~FrAkIVDvs~~sl~i 197 (484)
||||++.... +.-..+|++..+|.+|++-.+++++
T Consensus 44 LvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 44 LVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp EEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred eeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 5666655433 3346678899999999999888875
No 370
>PRK14432 acylphosphatase; Provisional
Probab=62.36 E-value=21 Score=30.77 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEe-CCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELT-GDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~T-G~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ |.|-...+.++.+++. |++++++.|++.|+.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 3788888998766 7788888999999997 999999999999975
No 371
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.16 E-value=85 Score=26.28 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=57.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhH
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V 394 (484)
+.+.+..--+||.|-+....+. .+.||.-..=-.... +..++-+-+.-.+..++++.++|+++= ..+.|+++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~-~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGS-DYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCC-CceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 6788888899999999999994 378888777655443 556676666633348899999999863 667888877654
No 372
>PRK14438 acylphosphatase; Provisional
Probab=61.97 E-value=21 Score=30.51 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46888899998876 6788889999999999999999999999974
No 373
>PRK14441 acylphosphatase; Provisional
Probab=61.56 E-value=22 Score=30.65 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|+++.++.|++.|+.
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 46889999999987 6788888889999999999999999999974
No 374
>PRK14446 acylphosphatase; Provisional
Probab=61.53 E-value=16 Score=31.39 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-...+.++.|++.|+++.++.|++.|+.
T Consensus 16 GFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 16 WYRASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred eEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 35788888998886 5677888889999999999999999999983
No 375
>PRK05925 aspartate kinase; Provisional
Probab=61.42 E-value=1e+02 Score=33.64 Aligned_cols=112 Identities=18% Similarity=0.141 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh---HHHHHHHHHHhcccceEEEeccCCchhHHHhhhe
Q 011491 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD---ESIGKLVQLLHKLIDLHEVQDITHLPFAERELIL 400 (484)
Q Consensus 324 ~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde---~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~L 400 (484)
.+|.++||.+.|.+.|+||+.++... +.++++++.++ ..++.+.+.|.++- ++. ++..+++
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~------~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i~-------~~~~~a~ 374 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN------LGVYFTIDDDDISEEYPQHLTDALSAFG---TVS-------CEGPLAL 374 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC------CEEEEEEechhccHHHHHHHHHHhcCCc---eEE-------EECCEEE
Confidence 57889999999999999999885432 36888888442 23444444444421 121 2336777
Q ss_pred eEEecCccc----hHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 401 IKIAVNTAA----RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 401 IKV~~~~~~----r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|-|--..-. -..++......+-+|+-++....-|-+.=+.+..++.++.|.
T Consensus 375 VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 375 ITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 777543222 235555556667788888877766666666666666665553
No 376
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.35 E-value=29 Score=26.76 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=34.6
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K 141 (484)
.+.||+++|+...+++ +||.-++.|.+ +..++++|+.+ ..+.+++.|+|
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~--~~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEE--DKDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHH--HHHHHHHHHHH
Confidence 4689999999999964 78887776665 33588888743 35556665554
No 377
>PRK02047 hypothetical protein; Provisional
Probab=61.22 E-value=62 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=53.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCce--eeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYN--IESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyN--IeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
..+.+.+...|.++..+.|..++.++... -++++..++..... +|+.+. .++++++.|=+.|.+.-.|.
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVK 88 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 35899999999999999999999998655 45577777655544 455444 35778999999998887774
No 378
>PRK14425 acylphosphatase; Provisional
Probab=60.93 E-value=24 Score=30.45 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|+.++|++|++.|+.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 46888999998887 5677778889999999999999999999985
No 379
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=60.74 E-value=25 Score=38.74 Aligned_cols=69 Identities=14% Similarity=0.328 Sum_probs=54.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccCC
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
|.|..+|+.|+..-|..+|..+++|+.++-+.+. + +|-+-.+. +.....++++++.++-.|..|..+.-
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 72 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---G--RIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPF 72 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---C--eEEEeCCCcChhhHHHHHHHHhcCCCccchhhhcc
Confidence 6788999999999999999999999999998554 3 35555543 44567889999999998888865443
No 380
>PRK14443 acylphosphatase; Provisional
Probab=60.46 E-value=27 Score=30.38 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhccC
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~py 453 (484)
-|.-+.++|..++ +.|-...++++.+++.|+.++++.|++.|+.-
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~g 65 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKKG 65 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhcC
Confidence 3778888998775 67888899999999999999999999999763
No 381
>PRK14440 acylphosphatase; Provisional
Probab=60.34 E-value=25 Score=30.10 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=38.8
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhccC
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~py 453 (484)
-|.-+.++|..++ +-|-...++++.+++.|+.++++.|++.|+..
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~g 64 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQG 64 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhC
Confidence 3788999998876 66777788899999999999999999999853
No 382
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=60.14 E-value=29 Score=40.63 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=72.9
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc--eE--EEeccCCchhHHHh
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID--LH--EVQDITHLPFAERE 397 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLid--Vi--~V~dlt~~~~V~RE 397 (484)
.++||++.|+...|.+.|+||+-++.+.++ ..++++++.+ ..+..++-|++-+. .. .+..+ .+...
T Consensus 326 ~~~~G~~arIf~~La~~gI~V~mIsqssSe----~sIsf~V~~~--d~~~av~~L~~~f~~el~~~~~~~i----~~~~~ 395 (819)
T PRK09436 326 KGMVGMASRVFAALSRAGISVVLITQSSSE----YSISFCVPQS--DAAKAKRALEEEFALELKEGLLEPL----EVEEN 395 (819)
T ss_pred CCCcCHHHHHHHHHHHCCCcEEEEEcCCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHHhccCCcceE----EEeCC
Confidence 478999999999999999999998877544 3588888843 34444444444211 00 01101 12345
Q ss_pred hheeEEecCcc-----chHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 398 LILIKIAVNTA-----ARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 398 L~LIKV~~~~~-----~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~p 452 (484)
+++|.|--... .-..++......+.+|.-++ .....|.+.=+.+..+..++.|..
T Consensus 396 valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 396 LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 77777754321 12456666666677775544 444555555555666666666653
No 383
>PRK14440 acylphosphatase; Provisional
Probab=59.74 E-value=25 Score=30.13 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...++++.+++.|+.++++.|++.|+.
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 46888999998877 5667778889999999999999999999985
No 384
>PRK14443 acylphosphatase; Provisional
Probab=59.68 E-value=27 Score=30.40 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 18 GFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred cCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 46888888888876 6678888899999999999999999999976
No 385
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=59.22 E-value=39 Score=39.59 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=78.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcc--ee--EEEecCCchhhhhhh
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN--VI--KVEDISNEPHVEREL 161 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLid--Vi--kV~dlt~~~~V~REL 161 (484)
+.++||++.|+...|++.|+||+-++.+.++ --++++++.+ ..+..++-|++-.. .. .+..+ .+...+
T Consensus 325 m~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~--d~~~av~~L~~~f~~el~~~~~~~i----~~~~~v 396 (819)
T PRK09436 325 MKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQS--DAAKAKRALEEEFALELKEGLLEPL----EVEENL 396 (819)
T ss_pred CCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHH--HHHHHHHHHHHHHHHHhccCCcceE----EEeCCE
Confidence 3578999999999999999999988866443 2377888743 24444444444211 10 11111 245678
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 011491 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 162 aLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++|.|--.. .--..++......+.+|.-++ .....|-+.=+.+..+..++.|..
T Consensus 397 alIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 397 AIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 899886543 233467777777788886555 555566666667777777777765
No 386
>PRK14448 acylphosphatase; Provisional
Probab=58.47 E-value=27 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..++ +.|-...+.++.+++.|+.++++.|++.|+.
T Consensus 18 R~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 18 RYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred HHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 788889998776 6788888889999999999999999999984
No 387
>PRK14450 acylphosphatase; Provisional
Probab=57.94 E-value=27 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=37.8
Q ss_pred chHHHHHHHHHcC--cEEEEecCCE-EEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHT-ITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~s-i~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ |.|-...+.+ +.+++.|++++++.|++.|+.
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 3788889998765 6777888885 999999999999999999984
No 388
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.59 E-value=43 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=32.4
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHh
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN 140 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~ 140 (484)
.+.||++.|+...+++- ||.-+..+.+ +-.++++++.+ ..++.++.|+
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s--~~~is~vv~~~--d~~~av~~LH 58 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAAN--DLNLTFVVDED--QADGLCARLH 58 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCC--CCeEEEEEeHH--HHHHHHHHHH
Confidence 47899999999999875 4555555554 23588888753 3455555554
No 389
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=57.37 E-value=48 Score=36.59 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=53.0
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC----CeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE----GLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~----~iSRiTIVV~gde~~ieql~kQL~KLidVi 383 (484)
..++....+++..++ +|-|.++..+|...+.||.-|.--++... .--.+.+-++++...+.++++-|.+-....
T Consensus 34 ~~~~~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 111 (457)
T TIGR01269 34 EAAMQNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFIS 111 (457)
T ss_pred cccceeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccc
Confidence 344445555555444 99999999999999999998887665322 234455556678888999999998765443
No 390
>PRK14448 acylphosphatase; Provisional
Probab=57.27 E-value=28 Score=29.76 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 45888888998877 6677788889999999999999999999985
No 391
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=56.98 E-value=34 Score=29.61 Aligned_cols=43 Identities=23% Similarity=0.527 Sum_probs=36.1
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeC
Q 011491 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSG 127 (484)
Q Consensus 80 htISilVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~g 127 (484)
+...+.|..|||||. -|.+-+.+.||+ +..+.+|. .|.+.+++
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-----~~el~ld~ 49 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-----VIELELDA 49 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-----EEEEEecC
Confidence 567899999999995 688999999998 88887664 58888876
No 392
>PRK14452 acylphosphatase; Provisional
Probab=56.90 E-value=29 Score=30.91 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhccC
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~py 453 (484)
-|.-+.++|..++ |.|-...+.++.+++.|+++++++|++.++..
T Consensus 35 FR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~g 81 (107)
T PRK14452 35 FRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCERG 81 (107)
T ss_pred hhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhcC
Confidence 3888999999876 67888888899999999999999999988763
No 393
>PRK08841 aspartate kinase; Validated
Probab=56.76 E-value=28 Score=37.24 Aligned_cols=60 Identities=12% Similarity=0.257 Sum_probs=47.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccce
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidV 382 (484)
-.+++.=++.||++.|+...+++.|+||.+++.+ + -+|+++++. +..++.++.|++-...
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~----~~is~vv~~--~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P----QSSMLVLDP--ANVDRAANILHKTYVT 378 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C----cEEEEEEeH--HHHHHHHHHHHHHHcC
Confidence 4577777889999999999999999999877742 2 567888874 5678888888876544
No 394
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=56.75 E-value=35 Score=29.53 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=39.1
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeC-ChHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPG-TDESIGK 371 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~g-de~~ieq 371 (484)
+...+.|..+||||+ -|.+-+.+.||+ +..+.+|. .|.+.++. +++..++
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-------~~el~ld~~~~e~a~~ 57 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-------VIELELDAESEEKAEE 57 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-------EEEEEecCcchhHHHH
Confidence 577899999999996 688899999999 99888874 47788876 3433333
No 395
>PRK14437 acylphosphatase; Provisional
Probab=56.53 E-value=27 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ |.|-...+.++.+++.|+.+.|++|++.|+.
T Consensus 38 FR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 38 FRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred chHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 3888999999876 6788888899999999999999999999984
No 396
>PRK14450 acylphosphatase; Provisional
Probab=56.44 E-value=29 Score=29.63 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~s-l~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.+ +.+++.|++++++.|++.|+.
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 46888889998876 6677777775 999999999999999999984
No 397
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=33 Score=40.48 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=38.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTV 361 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIV 361 (484)
..+++.+...|+||+|.+++++|+.-|.+|.|-.+..-...-.--+.++
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 3579999999999999999999999999999987765443333334444
No 398
>PRK14637 hypothetical protein; Provisional
Probab=54.98 E-value=1.2e+02 Score=28.56 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhHHHHHHHHHhcCcceeE-EEecC---Cchhhhhh
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIK-VEDIS---NEPHVERE 160 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----e~~veQI~kQL~KLidVik-V~dlt---~~~~V~RE 160 (484)
.-|--.-+..+....||.+..+.......+..++|.++++ -+..+++-++|...+|+.- ..++. .+|-++|.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRp 86 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERV 86 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCC
Confidence 4577778889999999999999998777777888888753 3567888888887776421 11111 02333333
Q ss_pred h-----------eeEEEeCCCCCHHHHHHHHHhc-CcEEEEecCCEEEEEEeC
Q 011491 161 L-----------MLIKLNGDTSTWPEIMWLVDIF-RAKVVDISEHALTIEVTG 201 (484)
Q Consensus 161 L-----------aLiKV~~~~~~r~eI~~l~~~F-rAkIVDvs~~sl~iE~TG 201 (484)
| -+|||.... + ..| .|.+.++.++.++++..|
T Consensus 87 L~~~~~f~r~~G~~V~V~l~~--~-------~~~~~G~L~~~~d~~v~l~~~~ 130 (151)
T PRK14637 87 IKNAAEFSIFVGETVKVWFEC--T-------GQWQVGTIAEADETCLVLTSDG 130 (151)
T ss_pred CCCHHHHHHhCCCEEEEEECC--C-------CcEEEEEEEEEeCCEEEEEECC
Confidence 3 245555421 1 225 599999999999998754
No 399
>PRK14437 acylphosphatase; Provisional
Probab=54.97 E-value=29 Score=31.02 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.|++.|+++.|++|++.|+.
T Consensus 37 GFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 37 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred CchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56899999999887 5678888889999999999999999999984
No 400
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=54.90 E-value=39 Score=28.14 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=38.9
Q ss_pred CHHHHHHHHHhcCcEEE--EecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 172 TWPEIMWLVDIFRAKVV--DISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 172 ~r~eI~~l~~~FrAkIV--Dvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
--.+|+++...|+.++| |.+.+++++=++|+..+++.+.+.|++
T Consensus 17 ~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 17 YDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHH
Confidence 34589999999999996 568889999999999999999999954
No 401
>PRK14452 acylphosphatase; Provisional
Probab=54.86 E-value=32 Score=30.70 Aligned_cols=45 Identities=9% Similarity=0.077 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.|++-|+++++++|++.++.
T Consensus 34 GFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 34 GFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred ChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 56899999999887 6677788889999999999999999998886
No 402
>PRK14424 acylphosphatase; Provisional
Probab=54.78 E-value=33 Score=29.83 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=38.2
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
-|.-+.++|..++ +.|-...+.++-|++.|+.++++.|++.|+.
T Consensus 22 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 22 FRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred hHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 3788889998765 6677778889999999999999999999984
No 403
>PRK00907 hypothetical protein; Provisional
Probab=54.15 E-value=92 Score=27.20 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=53.2
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCc--eeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGy--NIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
..+.|.|.-.++++....|..++.+.+- +=+++++-++..... +|+++. .+.++++.|-+.|.+.-.|.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 3589999999999999999999998865 456666667655544 555554 34778999999998887773
No 404
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=53.96 E-value=82 Score=26.89 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=52.6
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCC
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN 153 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~ 153 (484)
..++.+++..-.+||.|-+....+..+. ||.-++=-.+.+ .+. +-|-+.. .+.++++.++|+++= ..+.|+++
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~-~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPD-AEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SS-THHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCC-HHHHHHHHHHHHHcC--CCeEECCC
Confidence 4678999999999999999999987765 688888765444 344 4555554 444899999999884 77888888
Q ss_pred chhh
Q 011491 154 EPHV 157 (484)
Q Consensus 154 ~~~V 157 (484)
.+..
T Consensus 84 ne~~ 87 (91)
T PF00585_consen 84 NELA 87 (91)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7654
No 405
>PRK05783 hypothetical protein; Provisional
Probab=53.65 E-value=62 Score=27.92 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=42.0
Q ss_pred eEEEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCCh-hH-HHHHHHHHhcC
Q 011491 78 KRHTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE-RV-LRQVVEQLNKL 142 (484)
Q Consensus 78 ~khtISilVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gde-~~-veQI~kQL~KL 142 (484)
|++...|+|..|||||. -|.+-+.++||+ ++++.+|. .+.+.+++++ +. .+++.+-.+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-----~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-----YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-----EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45789999999999995 677888888884 88777664 5778887642 33 33443334555
No 406
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=53.60 E-value=50 Score=25.17 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHh
Q 011491 172 TWPEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNL 213 (484)
Q Consensus 172 ~r~eI~~l~~~FrAkIVDvs~~--sl~iE~TG~~~KIdafi~~L 213 (484)
....|.+|-+.++++ +.+.++ .-.+.++|+++.++...+++
T Consensus 18 ~G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 18 KGSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GGHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 455788999999999 677665 77999999999999887753
No 407
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=53.53 E-value=34 Score=37.65 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=54.0
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC-ChhHHHHHHHHHhcCcceeEEEecC
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g-de~~veQI~kQL~KLidVikV~dlt 152 (484)
|.|..+|+.|+-.-|..+|..+++|+.++-|.+. ++|-+-+.. +...+.++++++.+.-.|..|....
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 71 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhc
Confidence 6788999999999999999999999999988443 555555543 3455788999998888888875443
No 408
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=53.06 E-value=15 Score=31.91 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=23.2
Q ss_pred hcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhcc
Q 011491 182 IFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 182 ~FrAkIVDvs~~-sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+++.+.+.+ -++||+..+++|+++|++.|++
T Consensus 52 ih~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~ 86 (101)
T PF02641_consen 52 IHSARLLELSDDLPVVIEFIDTEEKIEAFLPELKE 86 (101)
T ss_dssp ---------TTS-EEEEEEEEEHHHHHHHHHHHCT
T ss_pred ccccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHH
Confidence 455777888887 7999999999999999999985
No 409
>PRK04998 hypothetical protein; Provisional
Probab=52.26 E-value=1e+02 Score=26.26 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=48.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
..|.+.+...+.++.++.|..+|.+..-.-+.+++-++..... +|+.+. .+++.++.|=+.|.+.-.|+
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 3589999999999999999999977633333455545433333 455443 35778999999998877774
No 410
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=52.18 E-value=43 Score=27.53 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=47.2
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHH-HHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKM-VAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KI-dafi~~L~~ 215 (484)
++.+.|.++.+.-..|+..+...||.|++... +...++..-....+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 35677888888888999999999999999965 47889999999999 788888875
No 411
>PRK14424 acylphosphatase; Provisional
Probab=52.01 E-value=37 Score=29.49 Aligned_cols=45 Identities=7% Similarity=0.075 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|=...+.++-|++.|++++|+.|++.|+.
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 56888999998876 5566777778999999999999999999984
No 412
>PRK14431 acylphosphatase; Provisional
Probab=51.34 E-value=41 Score=28.78 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..++ +.|-...+ ++.+++.|+++.+++|++.|+.
T Consensus 18 R~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 18 RYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred hHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 778889998776 55666654 6999999999999999999986
No 413
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=51.13 E-value=59 Score=24.79 Aligned_cols=40 Identities=8% Similarity=0.307 Sum_probs=33.3
Q ss_pred hHHHHHHHHHcCcEEEEecCC--EEEEEEeCCHHHHHHHHHHh
Q 011491 410 RRDVLDIAKIFRARAVDVSDH--TITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 410 r~eI~~la~ifrakIVDvs~~--si~iE~TG~~~Kidafi~lL 450 (484)
...|.+|-+.++++ +.+.++ .-.+.++|+++.++...+++
T Consensus 19 G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 19 GSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 35688899999999 777765 77999999999999887764
No 414
>PRK05783 hypothetical protein; Provisional
Probab=49.78 E-value=65 Score=27.77 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=41.4
Q ss_pred eEEEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHH-Hhcc
Q 011491 313 RSHTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQL-LHKL 379 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~----RVtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQ-L~KL 379 (484)
|.+...|+|..+||||+ -|.+-+.++||+ ++++.+|. .|.+.++++ ++..++.+++ .+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK-------~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGK-------YLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeE-------EEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45889999999999995 577788778884 88888875 367777754 3333333333 3554
No 415
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=49.75 E-value=42 Score=27.46 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=46.9
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+.|.++.+.-..|+..+..-||++.|... +...|+....-.++..|-..|+.
T Consensus 3 i~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 3 IEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 35677788888888999999999999999876 46889999999999888888875
No 416
>PRK05925 aspartate kinase; Provisional
Probab=49.54 E-value=3.2e+02 Score=29.94 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh---hHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEE
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE---RVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde---~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiK 165 (484)
.+|.++||.+.|.+.|+||+.++... .-++++++.++ ..++.+.+.+.++ -++. ++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~----~sis~~i~~~~~~~~~~~~l~~~l~~~---~~i~-------~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN----LGVYFTIDDDDISEEYPQHLTDALSAF---GTVS-------CEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC----CEEEEEEechhccHHHHHHHHHHhcCC---ceEE-------EECCEEEEE
Confidence 57889999999999999999886331 24667666432 2344444444432 1221 455788888
Q ss_pred EeCCCCC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 166 LNGDTST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 166 V~~~~~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
|--..-. -..++......+-+|.-++....-|-+.=+.+..+..++.|.
T Consensus 377 vVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 377 MIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 8654322 235555556667788888777666666666666666665553
No 417
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=49.07 E-value=53 Score=27.01 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=46.6
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEecC---CEEEEEEeCCHHHH-HHHHHHhcc
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLELTGDLNKI-IALQRLLEP 452 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs~---~si~iE~TG~~~Ki-dafi~lL~p 452 (484)
++.+.|.++.+.-..|+..+...||+|++... +...|+..-....+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 34677888887788999999999999999965 47889999999999 788888875
No 418
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=48.47 E-value=21 Score=31.02 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=23.5
Q ss_pred HcCcEEEEecCC-EEEEEEeCCHHHHHHHHHHhccC
Q 011491 419 IFRARAVDVSDH-TITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 419 ifrakIVDvs~~-si~iE~TG~~~Kidafi~lL~py 453 (484)
++.+++.+.+++ -++||+..+++|+++|++.|++.
T Consensus 52 ih~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~~ 87 (101)
T PF02641_consen 52 IHSARLLELSDDLPVVIEFIDTEEKIEAFLPELKEL 87 (101)
T ss_dssp ---------TTS-EEEEEEEEEHHHHHHHHHHHCTT
T ss_pred ccccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 345677777777 79999999999999999999863
No 419
>PRK14431 acylphosphatase; Provisional
Probab=46.86 E-value=65 Score=27.59 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-.. ++++.+++.|+++.|++|++.|+.
T Consensus 16 GFR~~~~~~A~~~gl~G~V~N~-~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 16 GFRYFTQRIAMNYNIVGTVQNV-DDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred eEhHHHHHHHhhcCCEEEEEEC-CCcEEEEEEcCHHHHHHHHHHHhc
Confidence 35788888898887 445555 457999999999999999999986
No 420
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=46.54 E-value=1.7e+02 Score=24.30 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=53.0
Q ss_pred EEEEEEcCc-hhHHHHHHHHHhccC-ceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 81 TISVFVGDE-SGIINRIAGVFARRG-YNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 81 tISilVeN~-pGVL~RIagLFsRRG-yNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
+|++.-+.+ +++..|++.+--... .=+.++.+-..++.-.-++++.|+-+.++++.++|.++=.|..+.-
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 455555554 789999999977665 4455555555544445688899999999999999999999888763
No 421
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=46.47 E-value=71 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.517 Sum_probs=35.9
Q ss_pred EEEEEEcCchhHHHH----HHHHHhccCce-eeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHH
Q 011491 81 TISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (484)
Q Consensus 81 tISilVeN~pGVL~R----IagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL 139 (484)
...|.|..+|||+.- |..-+...||+ ++++.+|. .+++.+++++ +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-----VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346777789999865 55555567998 88766553 4777777654 4455565555
No 422
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=46.03 E-value=47 Score=27.17 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=45.9
Q ss_pred heeEEecCccchHHHHHHHHHcCcEEEEecC---CEEEEEEeCCHHHHHHHHHHhcc
Q 011491 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 399 ~LIKV~~~~~~r~eI~~la~ifrakIVDvs~---~si~iE~TG~~~Kidafi~lL~p 452 (484)
+.+.|.++.+.-..|+..+..-||++.|... +...|+......++..|...|+.
T Consensus 4 ~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 4 EELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 4566777777778999999999999999976 46889999999999988888875
No 423
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=45.83 E-value=73 Score=26.56 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=36.2
Q ss_pred EEEEEEeCchhHHHH----HHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 011491 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (484)
Q Consensus 316 tLsilVeN~pGVL~R----VtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL 376 (484)
...|.|..+|||+.- |..-....||+ ++++.+|. .+++.++|++ +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-------VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346778899999865 44555557998 88876664 3666667654 4566666655
No 424
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=45.03 E-value=61 Score=28.81 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 011491 328 LNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365 (484)
Q Consensus 328 L~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd 365 (484)
++--..-+.+|||+.+-+...+++..|+.+.|+.|.|.
T Consensus 69 ~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~a~~~I~G~ 106 (115)
T PF03462_consen 69 FRMYQRYAERRGWKVEVLDYSPGEEGGIKSATLEISGE 106 (115)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSSSEEEEEEEEEST
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccceeEEEEEEEcC
Confidence 55556667799999999999999999999999999987
No 425
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=45.03 E-value=57 Score=37.76 Aligned_cols=87 Identities=10% Similarity=0.006 Sum_probs=58.6
Q ss_pred EEEEEEE-eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChH----HHHHHHHHHhcccceEEEecc
Q 011491 315 HTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE----SIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 315 htLsilV-eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~----~ieql~kQL~KLidVi~V~dl 388 (484)
+..+|.. -|+||.|.|++|+.+-.|.+|.|-.+.. +...+..+++.-. |..- -..++...+.--+++.. -
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 6888888 9999999999999999999999988877 6666666666543 4322 23445555565666652 2
Q ss_pred CCchhHHHhhheeEEecC
Q 011491 389 THLPFAERELILIKIAVN 406 (484)
Q Consensus 389 t~~~~V~REL~LIKV~~~ 406 (484)
.+...++-. ..+-|++.
T Consensus 623 ~~~~~~~~~-~~~e~r~~ 639 (693)
T PRK00227 623 GITATFWHG-NILEVRTE 639 (693)
T ss_pred CCCceEeeC-cEEEEEeC
Confidence 222223333 56667664
No 426
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=43.96 E-value=1.2e+02 Score=25.48 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=49.3
Q ss_pred EEEEEEEcCchhHHHHHHHHHhc-cCceeeeEeeeecCCCcEEEEEEeC-ChhHHHHHHHHHhcCcceeEEE
Q 011491 80 HTISVFVGDESGIINRIAGVFAR-RGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsR-RGyNIeSLtVg~Ted~~~iTIVV~g-de~~veQI~kQL~KLidVikV~ 149 (484)
|+-|+.|.=+|+-+..|..-+.. -|..|. ..++.|++-+|+.+ +.+.+.+..++|+.|-.|+.+.
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 67789999999999999888876 444443 33344887777764 4577888999999999999886
No 427
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=43.07 E-value=1e+02 Score=34.25 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=50.0
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-----cE-EEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-----AL-FTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-----~~-iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
...+++-.++ +|.|.++..+|...++||.-|---++... .. +.+-++++...++++++-|.+-.....+.
T Consensus 39 ~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (457)
T TIGR01269 39 NNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGIN 114 (457)
T ss_pred eEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcccccc
Confidence 3344444333 99999999999999999988877664322 12 55566777888999999998765544333
No 428
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=42.54 E-value=64 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=32.3
Q ss_pred CHHHHHHHHHhcCcEEEEecCCEEEEEEeCC-hhHHHHHHHHh
Q 011491 172 TWPEIMWLVDIFRAKVVDISEHALTIEVTGD-PGKMVAVQRNL 213 (484)
Q Consensus 172 ~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~-~~KIdafi~~L 213 (484)
.-.-|.+|.+.|+++ +++..+. .+.++|+ ++++++..+.+
T Consensus 20 gG~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 20 GGKTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred CchHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHh
Confidence 344788999999999 5787764 6999998 89998887765
No 429
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=42.36 E-value=67 Score=25.32 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCcEEEEecCCEEEEEEeCC-HHHHHHHHHHhc
Q 011491 411 RDVLDIAKIFRARAVDVSDHTITLELTGD-LNKIIALQRLLE 451 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~si~iE~TG~-~~Kidafi~lL~ 451 (484)
.-|-+|.+.|+++ +++.++. .+.++|+ ++++++..++++
T Consensus 22 ~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 22 KTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred hHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHhC
Confidence 4578899999999 6788765 6999998 899988877653
No 430
>PRK14645 hypothetical protein; Provisional
Probab=41.48 E-value=1.1e+02 Score=28.97 Aligned_cols=110 Identities=15% Similarity=0.287 Sum_probs=75.3
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhHHHHHHHHHhcCcceeEEEe----cC-Cc
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NE 154 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------e~~veQI~kQL~KLidVikV~d----lt-~~ 154 (484)
.+|+.-+-..+..+....||-+..+.+.....+.+++|.++.+ -+..+++-++|++++|+..... |. .+
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 3677788899999999999999999988766666788888742 2567889999999998653211 00 02
Q ss_pred hhhhhhh-----------eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 011491 155 PHVEREL-----------MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (484)
Q Consensus 155 ~~V~REL-----------aLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~K 205 (484)
|-++|.| -.+||+. =-+.|.|++.++.++.++++.-|..-+
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~----------~~k~~~G~L~~~~d~~i~l~~~~~~~~ 136 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRG----------PGENFTGRIKAVSGDQVTFDVGGEDRT 136 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEc----------CCeEEEEEEEEEeCCEEEEEECCeEEE
Confidence 2333333 1244432 125677888888888888887655433
No 431
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.13 E-value=2.1e+02 Score=23.89 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEE--EEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALF--TIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~i--TIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
+.+.+..--+||.|-+....+. .+.||.-.+=-... +.+.+ -|-+.+ . .++++.++|+++= ..+.|+++.+.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~-~-~~~~l~~~l~~~g--~~~~dls~ne~ 76 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPD-A-DLDELKERLDALG--YPYQEETDNPA 76 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeCh-H-HHHHHHHHHHHcC--CCeEECCCCHH
Confidence 5788888899999999999994 47899887765433 33443 344443 3 7889999998863 66778887654
Q ss_pred h
Q 011491 157 V 157 (484)
Q Consensus 157 V 157 (484)
.
T Consensus 77 ~ 77 (81)
T cd04907 77 Y 77 (81)
T ss_pred H
Confidence 3
No 432
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.53 E-value=20 Score=36.84 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=47.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
+.+..+ |.=|+.|+..|..+||+|.+...+.-.. +.+.+-+++ .+.+.+|+.-|+.+.||..|++
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P~---~~vev~~~~-lEk~qkL~q~L~e~edV~~iy~ 271 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIPL---EEVEVDVPA-LEKIQKLIQALYENEDVMFIYD 271 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeeccccccccC---CccccCccc-hHHHHHHHHHHhhchhHHHHhh
Confidence 445554 5569999999999999999765554322 334455553 6778888888998888887754
No 433
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=39.02 E-value=86 Score=26.14 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=36.8
Q ss_pred EEEEEEeCchhHHHH----HHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHH
Q 011491 316 TLSMLVNNTPGVLNI----VTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (484)
Q Consensus 316 tLsilVeN~pGVL~R----VtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----e~~ieql~kQL 376 (484)
...|.|..+|||+.- |..-+.+.||+ ++++.+|. .+++.++++ .+.++.+.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-------YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 567888899999965 55666668998 78766654 366666663 34456666655
No 434
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=38.94 E-value=1.8e+02 Score=26.41 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=62.8
Q ss_pred HHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhHHHHHHHHHhcCcceeEEEe----cC-Cchhhhhhhe----
Q 011491 96 IAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVERELM---- 162 (484)
Q Consensus 96 IagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----e~~veQI~kQL~KLidVikV~d----lt-~~~~V~RELa---- 162 (484)
|..+....||.+-.+.+........+++.++.+ -+..+++.+.++.++|+..... |. .+|-++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 345677889999999998877666788888643 3567788888998888843210 00 0233344332
Q ss_pred -------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhH
Q 011491 163 -------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGK 205 (484)
Q Consensus 163 -------LiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~K 205 (484)
.++|....... =-+.|.|+++++.++++++++.|...+
T Consensus 82 ~~~~iG~~v~v~~~~~~~-----~~~~~~G~L~~~~~~~i~l~~~~~~~~ 126 (141)
T PF02576_consen 82 FERFIGRKVKVKLKQPVN-----GRKEFEGKLLEVDEDEITLEVEGKGKK 126 (141)
T ss_dssp HHHH-SEEEEEE-SS-SS-----S-SEEEEEEEEEETTEEEEEEE-SS-E
T ss_pred HHHhcCCeEEEEEeccCC-----CcEEEEEEEEEEeCCEEEEEECCccce
Confidence 34555421100 024688999999999999999987543
No 435
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=37.83 E-value=2.3e+02 Score=25.05 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=61.1
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhcc--CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRR--GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRR--GyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
.+++++.-.++|+.-..|..+..|. |.-...+++-++....+-..+|.+. .+-++++-|-+.|.|.--|.=|
T Consensus 15 ~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~VkmV 89 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVKMV 89 (90)
T ss_pred cceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceEEe
Confidence 4799999999999999999999987 4566777889999999999999987 5677899999999988776543
No 436
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=37.56 E-value=1.6e+02 Score=24.71 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=49.6
Q ss_pred EEEEEEEeCchhHHHHHHHHHhc-cCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISR-RGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsR-RGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~ 386 (484)
|.-|++|.=+|+-+..|..-+.. -|. .+...++. .+|.+|+. .+.+.+.+.+++|+.|-.|+.+.
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~~~gv-----EVh~~~~~--GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAAIPGV-----EVHAVDED--GKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCCSTTE-----EEEEEETT--TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHcCCCc-----EEEeeCCC--CeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 67889999999999999988876 344 33333233 67888887 45678999999999999999885
No 437
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=36.96 E-value=1.2e+02 Score=25.09 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=38.3
Q ss_pred EEEEEEeC---chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHh
Q 011491 316 TLSMLVNN---TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLH 377 (484)
Q Consensus 316 tLsilVeN---~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~ 377 (484)
.++|.|.| .+|+=.+++..+..+||.+.+. +...... ..=+|... ++....++|-++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~--~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEV--GNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeec--CCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35566665 5788999999999999999554 4443232 33334433 55556666666664
No 438
>PRK00341 hypothetical protein; Provisional
Probab=36.66 E-value=2.2e+02 Score=24.58 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=49.8
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCcee--eeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNI--ESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNI--eSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
.+.+.|.-.+.++....|..++.+.. .. +++++-++..... +|+.+. .+++.++.|-+.|.+.-.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999998664 65 3455555544433 555544 35778999999998887774
No 439
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=36.35 E-value=1.3e+02 Score=25.13 Aligned_cols=54 Identities=28% Similarity=0.568 Sum_probs=36.4
Q ss_pred EEEEEEcCchhHHHH----HHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhHHHHHHHHH
Q 011491 81 TISVFVGDESGIINR----IAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (484)
Q Consensus 81 tISilVeN~pGVL~R----IagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----e~~veQI~kQL 139 (484)
...|.|..+|||+.- |..-+...||+ ++++.+|. .+++.++++ .+.++.+.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-----~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-----YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 567888899999864 56666678998 77765543 477776663 34455555555
No 440
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=35.92 E-value=79 Score=34.47 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecC-CCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 325 pGVL~RVtglFsRRG--yNIeSLtVg~te-~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
.|+|+|+....-.-| |.|+.+.+|.+. ++...||++..+ |++.+++|+.||.++
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~-~~~~l~~Il~~l~~~ 71 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSAR-DHQHLEEILTELIDL 71 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecC-CHHHHHHHHHHHHHc
Confidence 588999988887766 999999999754 567777775555 788999999999876
No 441
>PRK14640 hypothetical protein; Provisional
Probab=35.80 E-value=3.7e+02 Score=25.16 Aligned_cols=107 Identities=11% Similarity=0.200 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC----hhHHHHHHHHHhcCcceeEEE----ecC-Cchhhhhhh
Q 011491 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQLNKLVNVIKVE----DIS-NEPHVEREL 161 (484)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd----e~~veQI~kQL~KLidVikV~----dlt-~~~~V~REL 161 (484)
-+...+.-+....||-+..+.........++.|.++.+ -+..+.+-++|+.++|+.... .|. .+|-++|.|
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL 86 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPL 86 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcC
Confidence 34556778888999999999987766666788888743 356788999999999864221 010 123344444
Q ss_pred -----------eeEEEeCCC--CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChh
Q 011491 162 -----------MLIKLNGDT--STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPG 204 (484)
Q Consensus 162 -----------aLiKV~~~~--~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~ 204 (484)
-.|||+... .. -+.|.|++.++.++.+++++-|...
T Consensus 87 ~~~~~f~r~~G~~v~V~l~~~~~~-------~k~~~G~L~~v~~~~v~l~~~~~~~ 135 (152)
T PRK14640 87 FKVAQFEKYVGQEAAVTLRMATNN-------RRKFKGVIKAVQGDMITLTVDGKDE 135 (152)
T ss_pred CCHHHHHHhCCCeEEEEEecccCC-------ceEEEEEEEEEeCCEEEEEECCeEE
Confidence 235665421 22 2678999999999999999877643
No 442
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=35.74 E-value=1.5e+02 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=31.9
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL 114 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~ 114 (484)
+.-|-.+-+..||+|..|..+|+-|.+|+.+|..-|
T Consensus 281 ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP 316 (377)
T KOG2797|consen 281 KTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRP 316 (377)
T ss_pred eeeEEEEeecCCchHHHHHHHHHhhhceeeeeeccc
Confidence 445556689999999999999999999999999887
No 443
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=35.11 E-value=1.7e+02 Score=26.47 Aligned_cols=99 Identities=12% Similarity=0.187 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc--CcceeEEEecCCchhhhhhheeEEE
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK--LVNVIKVEDISNEPHVERELMLIKL 166 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K--LidVikV~dlt~~~~V~RELaLiKV 166 (484)
+|=-.+||-..+..-||+|+ +. .....+.-.++|+|.+ .+ .+.|.-|-++|
T Consensus 21 rP~p~~~IE~Am~e~~~~v~-----p~----------ksak~QalevIk~L~~~~~i------------pI~ra~m~l~v 73 (125)
T PF09377_consen 21 RPYPPTRIEKAMKEAHFSVD-----PN----------KSAKQQALEVIKKLKEKQII------------PIKRAKMRLRV 73 (125)
T ss_dssp BTT-HHHHHHHHHHTTS-SS-----TT----------S-HHHHHHHHHHHHTT--TS--------------EEEEEEEEE
T ss_pred CCCCHHHHHHHHHhCCcccC-----CC----------CCHHHHHHHHHHHHHHhCCC------------ceeeeeEEEEE
Confidence 34444555555555666643 11 1346677778888876 33 36788899999
Q ss_pred eCCCCCHHHHHHHHHhcCcEEEE--ecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 167 NGDTSTWPEIMWLVDIFRAKVVD--ISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 167 ~~~~~~r~eI~~l~~~FrAkIVD--vs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.++.+....+......+.+.+.+ .+.+++.+.+.=+|+.-+.|.+.++
T Consensus 74 ~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~ 123 (125)
T PF09377_consen 74 TIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVN 123 (125)
T ss_dssp EEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHc
Confidence 99999999998888888887743 4788888888888888888877765
No 444
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=34.39 E-value=14 Score=23.45 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.5
Q ss_pred cccccceeeeec
Q 011491 9 QKLNLSHCFITK 20 (484)
Q Consensus 9 ~~~~~~~~~~~~ 20 (484)
+.|+||+|.|++
T Consensus 3 ~~Ldls~n~l~~ 14 (22)
T PF00560_consen 3 EYLDLSGNNLTS 14 (22)
T ss_dssp SEEEETSSEESE
T ss_pred cEEECCCCcCEe
Confidence 689999999984
No 445
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=33.72 E-value=1.1e+02 Score=24.65 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=45.6
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEecC---CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs~---~si~iE~TG~~~Kidafi~lL~py 453 (484)
++.+.|.++.+.-..|+...+.-||++++..+ +...|+......++..|-..|+.+
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~ 61 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSL 61 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhh
Confidence 35677778877778999999999999999866 568888888888888888887754
No 446
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=33.61 E-value=1.3e+02 Score=22.31 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHhcCcEEEEec-CCEEEEEEeCChhHHHHHHHHhcc
Q 011491 168 GDTSTWPEIMWLVDIFRAKVVDIS-EHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 168 ~~~~~r~eI~~l~~~FrAkIVDvs-~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++-..-..+..+++.+++.|+|.. .+.+.+.+.=++++.++|.+.|..
T Consensus 3 ~~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 3 CDYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp E-CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHH
Confidence 344567789999999999998772 344999999999999999998764
No 447
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=32.70 E-value=1.1e+02 Score=30.81 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=67.1
Q ss_pred EEEEEEEeC-ChHHHHHHHHHHhccc-ceEEEec------cCCchhHHHhhheeEEec--CccchHHHHHHHHH-cCcEE
Q 011491 356 SCITTVVPG-TDESIGKLVQLLHKLI-DLHEVQD------ITHLPFAERELILIKIAV--NTAARRDVLDIAKI-FRARA 424 (484)
Q Consensus 356 SRiTIVV~g-de~~ieql~kQL~KLi-dVi~V~d------lt~~~~V~REL~LIKV~~--~~~~r~eI~~la~i-frakI 424 (484)
.=++..+.| .++.++.|.+.|..|= |.+-.=+ .+.-+.+.+|+.|.-+.- ...++.-+.++++. |++.|
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~I 140 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAII 140 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEE
Confidence 334555666 4558999888888774 2222222 234577888998865532 23455667789999 99999
Q ss_pred EEecCCEEEEEEeCC---HHHHHHHHHHhccCCc
Q 011491 425 VDVSDHTITLELTGD---LNKIIALQRLLEPYGI 455 (484)
Q Consensus 425 VDvs~~si~iE~TG~---~~Kidafi~lL~pyGI 455 (484)
|.|+..-+-=+.-|. .+-++.+..+=+.|||
T Consensus 141 v~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi 174 (223)
T COG2102 141 VAVSAEGLDESWLGRRIDREFLEELKSLNRRYGI 174 (223)
T ss_pred EEEeccCCChHHhCCccCHHHHHHHHHHHHhcCC
Confidence 999988777555554 3667777777677776
No 448
>PRK08841 aspartate kinase; Validated
Probab=32.05 E-value=1.1e+02 Score=32.73 Aligned_cols=57 Identities=11% Similarity=0.224 Sum_probs=42.9
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCc
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV 143 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLi 143 (484)
.+++.=++.||++.|+...+++.|+||.+++.+ + -.++++|+. +..++.++.|++-.
T Consensus 320 ~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f 376 (392)
T PRK08841 320 LLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTY 376 (392)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 567777788999999999999999999877742 2 347788864 45666667776644
No 449
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=31.44 E-value=1.1e+02 Score=24.62 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=44.9
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE---HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~---~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
+..+.|.++.+.-..|+.....-||++++..+ +...|+....-.++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~ 60 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhh
Confidence 45677888877788999999999999999866 55778888888888888877775
No 450
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=30.88 E-value=38 Score=30.68 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.3
Q ss_pred hcCcEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 011491 182 IFRAKVVDISEHA-LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 182 ~FrAkIVDvs~~s-l~iE~TG~~~KIdafi~~L~~ 215 (484)
++.++|.+.+.+- +++|+..+++||..|++.+++
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5667777777776 999999999999999999886
No 451
>PRK14636 hypothetical protein; Provisional
Probab=30.31 E-value=5.1e+02 Score=25.04 Aligned_cols=104 Identities=10% Similarity=0.084 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhHHHHHHHHHhcCcceeEE---------E-----
Q 011491 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKV---------E----- 149 (484)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------e~~veQI~kQL~KLidVikV---------~----- 149 (484)
+-+...+..+....||-+..+.+-....+..+.|.++.+ -+..+++-++|+.++|+... .
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 345667888899999999999986655555688888633 26788999999999996432 1
Q ss_pred -ecCCchhhhhhh-eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEe
Q 011491 150 -DISNEPHVEREL-MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVT 200 (484)
Q Consensus 150 -dlt~~~~V~REL-aLiKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~T 200 (484)
-|+...+..|-. -+|||+.. ...+ +.|.|+++++..+.++++.-
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~~g~-------k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPLDGR-------KQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEecccCCe-------EEEEEEEEEEeCCEEEEEEc
Confidence 122223333322 23455442 1222 56889999999999999873
No 452
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=30.14 E-value=1.5e+02 Score=21.97 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=38.0
Q ss_pred ecCccchHHHHHHHHHcCcEEEEec-CCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 404 AVNTAARRDVLDIAKIFRARAVDVS-DHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 404 ~~~~~~r~eI~~la~ifrakIVDvs-~~si~iE~TG~~~Kidafi~lL~p 452 (484)
.++-..-..+..+++.+++.|+|.. .+.+.+.+.=.+++.++|.+.|..
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHH
Confidence 3444556778899999999998872 334999999999999999988753
No 453
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=29.96 E-value=17 Score=22.15 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=8.5
Q ss_pred ccccccceeeeec
Q 011491 8 YQKLNLSHCFITK 20 (484)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (484)
-++|+||+|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4789999999763
No 454
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.41 E-value=63 Score=37.41 Aligned_cols=48 Identities=31% Similarity=0.286 Sum_probs=40.3
Q ss_pred CcccCcccccccceeeeeccccEEEEecCCCCCCcccccccccccceeeeeeccCC
Q 011491 2 AATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGS 57 (484)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (484)
.+|||.-|.+|- -.+.|+| .|||--|+-|+|+..||+......++-.+
T Consensus 795 ggtmtss~~~~~--~~~~~gs------s~~sv~r~vf~s~~~vpgfa~~~~~n~~s 842 (864)
T KOG2219|consen 795 GGTMTSSPRMNP--FRIVKGS------SPGSVRRTVFTSSSSVPGFAGHYSANLRS 842 (864)
T ss_pred CceeccCCCCCC--CccCCCC------CCCccccceeeccccCCCccceeeccccc
Confidence 478999998886 4578888 49999999999999999999888777444
No 455
>PRK14646 hypothetical protein; Provisional
Probab=29.00 E-value=5e+02 Score=24.50 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhHHHHHHHHHhcCcceeEEEe----cC-Cchhhhh
Q 011491 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVER 159 (484)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------e~~veQI~kQL~KLidVikV~d----lt-~~~~V~R 159 (484)
-+...+..+....||-+-.+.+.....+.++.|.++.+ -+..+.+-++|+.++|+..... |. .+|-++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 46677888899999999999988776666788888743 2457889999999998643211 10 1233444
Q ss_pred hh-----------eeEEEeCCC-CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 011491 160 EL-----------MLIKLNGDT-STWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (484)
Q Consensus 160 EL-----------aLiKV~~~~-~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~ 203 (484)
.| -.+||+... ... -+.|.|.+.++.++.+++++-|..
T Consensus 88 pL~~~~df~r~~G~~v~V~l~~~~~~------~~~~~G~L~~~~~~~v~l~~~g~~ 137 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVELNQKNSK------IKFLNGLLYEKSKDYLAINIKGKI 137 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEEecCcCC------eEEEEEEEEEEeCCEEEEEECCEE
Confidence 33 245555421 111 267899999999999999987653
No 456
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=28.65 E-value=1.2e+02 Score=24.31 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=44.7
Q ss_pred heeEEecCccchHHHHHHHHHcCcEEEEecC--CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD--HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 399 ~LIKV~~~~~~r~eI~~la~ifrakIVDvs~--~si~iE~TG~~~Kidafi~lL~py 453 (484)
+.+.|.++.+.-..|++....-||++++..+ +...|.......++..|-..|+.+
T Consensus 4 ~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~ 60 (78)
T cd03713 4 MKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSL 60 (78)
T ss_pred EEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhh
Confidence 4567777777778899999999999999865 467788888888888888888753
No 457
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=28.54 E-value=1.3e+02 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=45.2
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+.|.++.+.-..|+.+...-||+|++... +...|+....-.++..|-..|+.
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~ 59 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPS 59 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHh
Confidence 35677888888888999999999999998754 56778888888888888888775
No 458
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=28.40 E-value=1.5e+02 Score=23.92 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=45.4
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEecC--CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVSD--HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs~--~si~iE~TG~~~Kidafi~lL~py 453 (484)
++.+.|.++.+.-..|+.+...-||+|++... +...|+......++..|-..|+.+
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~ 60 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSY 60 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhh
Confidence 34567778877788999999999999998864 577888888888888888888753
No 459
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=28.31 E-value=1.1e+02 Score=24.58 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=44.8
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
+..+.|.++.+.-..|++....-||++++..+ +...|.......++..|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~ 59 (78)
T cd03713 3 IMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRS 59 (78)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHh
Confidence 34667778877788999999999999998865 46778888888888888888875
No 460
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=27.48 E-value=1.2e+02 Score=30.60 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=77.6
Q ss_pred hccCceeeeEeeeecCCC-c---------------------EEEEEEeC-ChhHHHHHHHHHhcCc-ceeEEEec-----
Q 011491 101 ARRGYNIESLAVGLNVDK-A---------------------LFTIVVSG-TERVLRQVVEQLNKLV-NVIKVEDI----- 151 (484)
Q Consensus 101 sRRGyNIeSLtVg~Ted~-~---------------------~iTIVV~g-de~~veQI~kQL~KLi-dVikV~dl----- 151 (484)
.+.|+.+..|-.-..+++ + +++..+.| .++.++++.+.|..|= |.+-.=++
T Consensus 21 ~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yq 100 (223)
T COG2102 21 LEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQ 100 (223)
T ss_pred HHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHH
Confidence 456777777665544443 1 14555666 4568999988888775 33333332
Q ss_pred -CCchhhhhhheeEEEeC--CCCCHHHHHHHHHh-cCcEEEEecCCEEEEEEeCC---hhHHHHHHHHhccCCc
Q 011491 152 -SNEPHVERELMLIKLNG--DTSTWPEIMWLVDI-FRAKVVDISEHALTIEVTGD---PGKMVAVQRNLSKFGI 218 (484)
Q Consensus 152 -t~~~~V~RELaLiKV~~--~~~~r~eI~~l~~~-FrAkIVDvs~~sl~iE~TG~---~~KIdafi~~L~~fGI 218 (484)
+.-+.+.+|+.|.-+.- ...++.-+.++++. |+|.||.|+..-+-=+.-|. .+-++.+..+=+.|||
T Consensus 101 k~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi 174 (223)
T COG2102 101 KERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYGI 174 (223)
T ss_pred HHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcCC
Confidence 33567888998765532 12566678899999 99999999988777555554 3556666666677885
No 461
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=27.13 E-value=1e+02 Score=26.21 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEE
Q 011491 175 EIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKEL 221 (484)
Q Consensus 175 eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~ 221 (484)
-..++.+.+++ ..=-++||.+|.++-++..++.|++.|.+-+
T Consensus 46 ~~~~i~~~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 46 FVEQIRELTGG-----RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp HHHHHHHHTTT-----SSEEEEEESSSSHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccc-----ccceEEEEecCcHHHHHHHHHHhccCCEEEE
Confidence 45556666666 3335789999999999999999999994433
No 462
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=27.13 E-value=2.5e+02 Score=23.36 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=49.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCc--eeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGY--NIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGy--NIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
..|.+.+...|.++..+.|..+|.+.-= +-..+...++..... +|+.+. .+.+.++.+-+.|.+.-.|.
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vk 82 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVK 82 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEE
Confidence 4689999999999999999999999643 334444554444334 455443 46788999999998877665
No 463
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=27.03 E-value=3.7e+02 Score=22.32 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=51.5
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccCceeee-eeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQS-LAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 316 tLsilVeN~-pGVL~RVtglFsRRGyNIeS-LtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
+|++.-+.. +++..|++.+--...=-|-| +.+--.++..+ -++++.|+-+.++.+.+.|.++=.|..+.-
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~Cl--Evivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCL--EVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEE--EEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeE--EEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 566666555 78999999998776655544 44444433332 456778999999999999999999988763
No 464
>PRK14645 hypothetical protein; Provisional
Probab=26.93 E-value=2.8e+02 Score=26.26 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=76.5
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C---ChHHHHHHHHHHhcccceEEEe----------
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHKLIDLHEVQ---------- 386 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---de~~ieql~kQL~KLidVi~V~---------- 386 (484)
.+|+.-+-..+..+....||-+..+.+.....+.+-|+.|--+ | +-+..+++-++|.+++|+....
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 4677888899999999999999999998776666656555421 2 3457888999999999975431
Q ss_pred -----ccCCchhHHHhhh-eeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHH
Q 011491 387 -----DITHLPFAERELI-LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKI 443 (484)
Q Consensus 387 -----dlt~~~~V~REL~-LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Ki 443 (484)
.|+......|-.- .+||+. =-+.|.|++.++.++.++++.-|..-+|
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~----------~~k~~~G~L~~~~d~~i~l~~~~~~~~i 137 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRG----------PGENFTGRIKAVSGDQVTFDVGGEDRTL 137 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEc----------CCeEEEEEEEEEeCCEEEEEECCeEEEE
Confidence 1122222233222 244432 1256889999999999999886655443
No 465
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=26.88 E-value=5.2e+02 Score=24.01 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhHHHHHHHHHhcCcceeEEEe----cC-Cchhhhhhh
Q 011491 91 GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (484)
Q Consensus 91 GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----de~~veQI~kQL~KLidVikV~d----lt-~~~~V~REL 161 (484)
-+-..+..+....||.+..+.+.....+..++|.++. +-+..+.+-+++...+|+..... |. .+|-++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 3556778889999999999999887777788999874 34678888899988888543210 00 022333333
Q ss_pred e-----------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCC
Q 011491 162 M-----------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGD 202 (484)
Q Consensus 162 a-----------LiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~ 202 (484)
- +++|..... ..=-+.|.|+++++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 2 255543211 00124677889999999999987765
No 466
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=26.18 E-value=51 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.9
Q ss_pred HcCcEEEEecCCE-EEEEEeCCHHHHHHHHHHhcc
Q 011491 419 IFRARAVDVSDHT-ITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 419 ifrakIVDvs~~s-i~iE~TG~~~Kidafi~lL~p 452 (484)
+++++|.+.+.+- +++|+..+++||..|++.+++
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4566777777776 999999999999999999875
No 467
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=25.49 E-value=56 Score=33.01 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=23.7
Q ss_pred cceeeeeccccEEEEecCCCCCCccccc
Q 011491 13 LSHCFITKSCDFVLFWRPPSQGRTSFSS 40 (484)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (484)
|.+|-+-.+-|-+++|.||.+.||-|.+
T Consensus 65 lp~nvL~~~~~~~vWy~p~~~R~v~F~~ 92 (228)
T TIGR03737 65 LDPNVLALSPGLMVWWTPAATRRVFFQS 92 (228)
T ss_pred cCccEEEeCCCeEEEEecCceEEEEEec
Confidence 5566667778999999999999999974
No 468
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=24.91 E-value=1.1e+02 Score=32.79 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK 352 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~ 352 (484)
+.+..+--|--.-+..||+|-+|..+|+-|.+|+.+|..-|-..
T Consensus 276 t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~ 319 (377)
T KOG2797|consen 276 TDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHN 319 (377)
T ss_pred CCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccC
Confidence 34444445555589999999999999999999999999988443
No 469
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.80 E-value=1.7e+02 Score=22.37 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCcEEEEecCC---EEEEEEeCChhHHHHHHHHh
Q 011491 174 PEIMWLVDIFRAKVVDISEH---ALTIEVTGDPGKMVAVQRNL 213 (484)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~---sl~iE~TG~~~KIdafi~~L 213 (484)
..|.+|.+.++++| ++.+. .=.+.++|+++.+....+.+
T Consensus 20 ~~i~~i~~~~g~~I-~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 20 SNIRKIMEETGVKI-RFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CcHHHHHHHhCCEE-EcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 46778888999985 55552 45689999999998887765
No 470
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=24.80 E-value=1.3e+02 Score=30.25 Aligned_cols=60 Identities=23% Similarity=0.397 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 324 ~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
.|.-|..|...+...||.|++-.+.-..... +.+ -..+-+.+.+++..|+.+.||.+|++
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~---v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNNP---VEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS----EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCCC---ccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 5888999999999999999987766543322 222 11234468889999999999999974
No 471
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=24.75 E-value=1.6e+02 Score=23.90 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+.|.++.+.-..|+..+..-||+|++... +...|+......++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~ 59 (78)
T cd04097 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRS 59 (78)
T ss_pred EEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHh
Confidence 35677778878888999999999999998864 45778888888888888888875
No 472
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=24.37 E-value=5.1e+02 Score=23.12 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=28.3
Q ss_pred eeEEecCc---cchHHHH-HHHHHcCcEEEEecCCEEEEEEeCC
Q 011491 400 LIKIAVNT---AARRDVL-DIAKIFRARAVDVSDHTITLELTGD 439 (484)
Q Consensus 400 LIKV~~~~---~~r~eI~-~la~ifrakIVDvs~~si~iE~TG~ 439 (484)
||||+.-. +.|.++. .||+.-+|..|++-..++++---|.
T Consensus 45 LIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~vlyr~~~ 88 (97)
T COG1534 45 LIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLVLYRESK 88 (97)
T ss_pred cEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEEEEecCc
Confidence 45555432 3455544 5889999999999999999877443
No 473
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=3.9e+02 Score=23.89 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=40.0
Q ss_pred eC-ChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEEeC-CCCCHHH-HHHHHHhcCcEEEEecCCEEEEEEeC
Q 011491 126 SG-TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPE-IMWLVDIFRAKVVDISEHALTIEVTG 201 (484)
Q Consensus 126 ~g-de~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV~~-~~~~r~e-I~~l~~~FrAkIVDvs~~sl~iE~TG 201 (484)
.| ++..+.+|-.||+ .|||.=|||-- ..+.|.+ ...||+.-+|..|++-...+++---|
T Consensus 26 ~Glte~vi~Ei~~aL~-----------------~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~vlyr~~ 87 (97)
T COG1534 26 NGLTEGVIKEIDRALE-----------------ARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLVLYRES 87 (97)
T ss_pred CccCHHHHHHHHHHHH-----------------hCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEEEEecC
Confidence 45 6777888877773 45543333322 2245555 45788999999999999999887643
No 474
>PRK14640 hypothetical protein; Provisional
Probab=24.18 E-value=3.8e+02 Score=25.09 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C-ChHHHHHHHHHHhcccceEEEe---------------cc
Q 011491 326 GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G-TDESIGKLVQLLHKLIDLHEVQ---------------DI 388 (484)
Q Consensus 326 GVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g-de~~ieql~kQL~KLidVi~V~---------------dl 388 (484)
-+...+.-+....||-+..+.........+-|+.|--+ | +-+..+.+-++|+.++|+.... .+
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL 86 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPL 86 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcC
Confidence 34556777888999999999988877777766666422 1 4567889999999999864221 11
Q ss_pred CCchhHHHhh-heeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHH
Q 011491 389 THLPFAEREL-ILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNK 442 (484)
Q Consensus 389 t~~~~V~REL-~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~K 442 (484)
+...+..|=+ -.+||+..... +--+.|.|++.++.++.++++.-|...+
T Consensus 87 ~~~~~f~r~~G~~v~V~l~~~~-----~~~k~~~G~L~~v~~~~v~l~~~~~~~~ 136 (152)
T PRK14640 87 FKVAQFEKYVGQEAAVTLRMAT-----NNRRKFKGVIKAVQGDMITLTVDGKDEV 136 (152)
T ss_pred CCHHHHHHhCCCeEEEEEeccc-----CCceEEEEEEEEEeCCEEEEEECCeEEE
Confidence 2222222222 23555542211 1126789999999999999998776433
No 475
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=24.00 E-value=1.8e+02 Score=23.85 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=45.1
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEecC--CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVSD--HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs~--~si~iE~TG~~~Kidafi~lL~py 453 (484)
++.+.|.++.+.-..|++.+..-||+|.+..+ +...|+..-...++..|-..|+.+
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~ 62 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSA 62 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHh
Confidence 34567777777778999999999999999875 457788888888888888888753
No 476
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=23.93 E-value=1.9e+02 Score=23.83 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=43.6
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEec--CCE--EEEEEeCCHHHHHHHHHHhccC
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVS--DHT--ITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs--~~s--i~iE~TG~~~Kidafi~lL~py 453 (484)
++.+.|.++.+.-..|+...+.-||+|.+.. +++ .+|+..=...++..|-..|+.+
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 4567788888777899999999999999543 345 6777777788888888888754
No 477
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=23.82 E-value=2.3e+02 Score=23.31 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=36.9
Q ss_pred EEEEEcC---chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHh
Q 011491 82 ISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLN 140 (484)
Q Consensus 82 ISilVeN---~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~ 140 (484)
++|.|.| .+|.=.+++..+..+||.+.+..-.+... ..-+|... ++....++|-++|.
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 4555555 57889999999999999995543333222 22344433 45556666666664
No 478
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=23.63 E-value=1.6e+02 Score=24.15 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=45.1
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISE--HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~--~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+.|.++.+.-..|+..+..-||+|++..+ +...|+.......+..|-..|+.
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs 61 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRS 61 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHH
Confidence 45677778877888999999999999998875 45778888888888888888875
No 479
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=23.53 E-value=73 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred eCCHHHHHHHHHHhccCCc-EEEeecceeEeec
Q 011491 437 TGDLNKIIALQRLLEPYGI-CEVARTGRVALVR 468 (484)
Q Consensus 437 TG~~~Kidafi~lL~pyGI-lEvaRTG~vAl~R 468 (484)
.|..+=.++|.+.++..|+ +++.+||..++--
T Consensus 14 aGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~ 46 (92)
T cd03063 14 LGADEVAEAIEAEAAARGLAATIVRNGSRGMYW 46 (92)
T ss_pred hCHHHHHHHHHHHHHHcCCeEEEEEecCceecC
Confidence 5778888999999999998 8999999998843
No 480
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=23.46 E-value=1.9e+02 Score=22.04 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCcEEEEecCC---EEEEEEeCCHHHHHHHHHHh
Q 011491 411 RDVLDIAKIFRARAVDVSDH---TITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~---si~iE~TG~~~Kidafi~lL 450 (484)
..|.+|.+.++++ |++.+. .=.+.++|+++.+....++|
T Consensus 20 ~~i~~i~~~~g~~-I~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 20 SNIRKIMEETGVK-IRFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CcHHHHHHHhCCE-EEcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 3577888899998 566552 45679999999998887765
No 481
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=23.30 E-value=4.2e+02 Score=26.83 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=47.6
Q ss_pred EEEeCChHHHHHHHHHHhcccceEEEeccCCc---h---hHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEE
Q 011491 360 TVVPGTDESIGKLVQLLHKLIDLHEVQDITHL---P---FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTIT 433 (484)
Q Consensus 360 IVV~gde~~ieql~kQL~KLidVi~V~dlt~~---~---~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~ 433 (484)
+.|.|. -.+-++.-|+-|.... +|.-.+.. + ..-+++---.+....+ ++.+ .+. . ..=-++
T Consensus 176 vlI~G~-G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~---~~~~-~~~-~------~~~d~v 242 (355)
T cd08230 176 ALVLGA-GPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYVNSSKT---PVAE-VKL-V------GEFDLI 242 (355)
T ss_pred EEEECC-CHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEecCCcc---chhh-hhh-c------CCCCEE
Confidence 445575 6788888888888765 45444321 1 1112222222211111 1111 000 0 112489
Q ss_pred EEEeCCHHHHHHHHHHhccCCcEE
Q 011491 434 LELTGDLNKIIALQRLLEPYGICE 457 (484)
Q Consensus 434 iE~TG~~~Kidafi~lL~pyGIlE 457 (484)
++.+|.+.-++..++.|++.|.+-
T Consensus 243 id~~g~~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 243 IEATGVPPLAFEALPALAPNGVVI 266 (355)
T ss_pred EECcCCHHHHHHHHHHccCCcEEE
Confidence 999999888999999999999543
No 482
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=23.20 E-value=1.6e+02 Score=24.15 Aligned_cols=56 Identities=5% Similarity=0.026 Sum_probs=43.8
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEec--CCE--EEEEEeCChhHHHHHHHHhccC
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--EHA--LTIEVTGDPGKMVAVQRNLSKF 216 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs--~~s--l~iE~TG~~~KIdafi~~L~~f 216 (484)
++.+.|.++.+.-..|+.....-||+|++.. +++ .+|+..=.-.++..|-..|+.+
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 4677888888888899999999999999543 345 6777777778888888887753
No 483
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=23.14 E-value=1.9e+02 Score=23.36 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=44.3
Q ss_pred heeEEecCccchHHHHHHHHHcCcEEEEecC--CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD--HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 399 ~LIKV~~~~~~r~eI~~la~ifrakIVDvs~--~si~iE~TG~~~Kidafi~lL~py 453 (484)
+.+.|.++.+.-..|+..+..-||+|++... +...|+......++-.|-..|+.+
T Consensus 4 ~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~ 60 (78)
T cd04097 4 MKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSM 60 (78)
T ss_pred EEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhh
Confidence 4567777777778999999999999999864 457788888888888888888753
No 484
>PRK13558 bacterio-opsin activator; Provisional
Probab=23.04 E-value=1.1e+03 Score=26.28 Aligned_cols=132 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhh
Q 011491 80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (484)
Q Consensus 80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~ 158 (484)
..+.+.+.+..-.|.+++.-+ |..|+--.+-++.+.+. +-+.+.|++ .+.+...|.---.|..+..++..+
T Consensus 450 ~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~--- 521 (665)
T PRK13558 450 LELEVELSDPDLFLVELAAAT---DCRLEYRGSIADDDGGVLVLFTVPGDD--ATALVDAAADYDAVQDVRVLVSTD--- 521 (665)
T ss_pred EEEEEEECCCcchHHHHhhhc---CcEEEEEeEEEcCCCCEEEEEEEeCCC--HHHHHHhhhccCCcceEEEEEecC---
Confidence 477888889989999877654 77777666667766654 555677764 245556666666665555543322
Q ss_pred hhheeEEEeCCCCCHHHHHHHHHhcCcEEEEe--cCCEEEEEE-eCChhHHHHHHHHhccC-CcEEEee
Q 011491 159 RELMLIKLNGDTSTWPEIMWLVDIFRAKVVDI--SEHALTIEV-TGDPGKMVAVQRNLSKF-GIKELAR 223 (484)
Q Consensus 159 RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDv--s~~sl~iE~-TG~~~KIdafi~~L~~f-GIlE~aR 223 (484)
.-.|+++..+.. .+......+++.|.++ .++..++.+ .++.+.+.++++.|+.. .=.++.+
T Consensus 522 -~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (665)
T PRK13558 522 -DECLVEFTLSGD---SLVRLLSERGGRVQDMHADRDRLELTVEVPTEAAGRAVVETLRDRYAGAELVS 586 (665)
T ss_pred -CceEEEEEecCC---cHhHhhHhcCCEEEEEEEeCCeEEEEEEcCCCccHHHHHHHHHhhcCCcEEEE
Confidence 247888876542 6888888999999876 556677777 67888888999988864 3334444
No 485
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=22.98 E-value=1.9e+02 Score=31.65 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEeC-ChhHHHHHHHHHhcCc
Q 011491 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVSG-TERVLRQVVEQLNKLV 143 (484)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Te-d~~~iTIVV~g-de~~veQI~kQL~KLi 143 (484)
.|+|+|+....-..| |.|+.+.+|.+. |++.-.|.|.+ |++.+++|+.||.++=
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~~G 72 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELIDLG 72 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHHcC
Confidence 689999998887776 999999999765 55666666664 6788999999998763
No 486
>PRK14634 hypothetical protein; Provisional
Probab=22.90 E-value=6.5e+02 Score=23.74 Aligned_cols=107 Identities=8% Similarity=0.188 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC------hhHHHHHHHHHhcCcceeEEE----ecC-Cchhhh
Q 011491 90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT------ERVLRQVVEQLNKLVNVIKVE----DIS-NEPHVE 158 (484)
Q Consensus 90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd------e~~veQI~kQL~KLidVikV~----dlt-~~~~V~ 158 (484)
.-+-..+..+....||-+..+.+.......++.+.++.+ -+..+.+-++|+.++|+.... .|. .+|-++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 345566777788999999999987766666788888732 246788899999999865321 110 023333
Q ss_pred hhh-----------eeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCCh
Q 011491 159 REL-----------MLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDP 203 (484)
Q Consensus 159 REL-----------aLiKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~ 203 (484)
|.| -++||+.. ... -+.|.|+++++..+.+++++-|..
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~~~~~-------~k~~~G~L~~~~~~~v~l~~~~~~ 137 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRDDDGS-------EQRLEGLLLERNEDHLQINIRGRI 137 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEecCCCC-------eEEEEEEEEEEeCCEEEEEECCEE
Confidence 333 13444432 122 257899999999999999986543
No 487
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=22.79 E-value=38 Score=34.31 Aligned_cols=19 Identities=37% Similarity=0.884 Sum_probs=14.9
Q ss_pred ccccEEEEecCCCCCCccc
Q 011491 20 KSCDFVLFWRPPSQGRTSF 38 (484)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (484)
++.|.+|||-||..|.|++
T Consensus 48 ~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp S---EEEEESSTTSSHHHH
T ss_pred CCcceEEEECCCccchhHH
Confidence 4578999999999999998
No 488
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=22.78 E-value=63 Score=26.80 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHcCcEEEEecCCEEEEEEeCCH
Q 011491 418 KIFRARAVDVSDHTITLELTGDL 440 (484)
Q Consensus 418 ~ifrakIVDvs~~si~iE~TG~~ 440 (484)
..++|...||.+|.+++|..|.+
T Consensus 31 g~v~G~L~~V~pDhIvl~~~~~~ 53 (66)
T PF10842_consen 31 GSVRGILVDVKPDHIVLEENGTP 53 (66)
T ss_pred CcEEEEEEeecCCEEEEEeCCcE
Confidence 45789999999999999998753
No 489
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=22.70 E-value=1.5e+02 Score=23.94 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=45.0
Q ss_pred hheeEEecCccchHHHHHHHHHcCcEEEEecC--CE--EEEEEeCCHHHHHHHHHHhccC
Q 011491 398 LILIKIAVNTAARRDVLDIAKIFRARAVDVSD--HT--ITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 398 L~LIKV~~~~~~r~eI~~la~ifrakIVDvs~--~s--i~iE~TG~~~Kidafi~lL~py 453 (484)
++.+.|.++.+.-..|+..+..-||+|++... ++ ..|.......++..|...|+.+
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~ 62 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSA 62 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhh
Confidence 35677888877778999999999999997764 23 7788888888888888888764
No 490
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=22.43 E-value=94 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
.|.-|..|...+...||.|++-.+...... .+.+ -..+-..+.+++..|+.+-||.+|++
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~-~v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNN-PVEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS--EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCC-Cccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 588899999999999999997666543222 2333 22334668889999999999999975
No 491
>PRK14639 hypothetical protein; Provisional
Probab=22.28 E-value=4.6e+02 Score=24.32 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHhccCceeeeEeeeecCCCcEEEEEEeCCh----hHHHHHHHHHhcCcceeEEEecCC-----chhhhhhh--------
Q 011491 99 VFARRGYNIESLAVGLNVDKALFTIVVSGTE----RVLRQVVEQLNKLVNVIKVEDISN-----EPHVEREL-------- 161 (484)
Q Consensus 99 LFsRRGyNIeSLtVg~Ted~~~iTIVV~gde----~~veQI~kQL~KLidVikV~dlt~-----~~~V~REL-------- 161 (484)
+....||-+-.+.+.....+.+++|.++.+. +..+++-++|+.++|+.....-.- +|-++|.|
T Consensus 6 ~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~r 85 (140)
T PRK14639 6 LCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFAK 85 (140)
T ss_pred hHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHHHH
Q ss_pred ---eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEE
Q 011491 162 ---MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEV 199 (484)
Q Consensus 162 ---aLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~ 199 (484)
-.+||+... -+.|.|+++++..+.+++|.
T Consensus 86 ~~G~~v~v~l~~---------~~~~~G~L~~~~~~~i~l~~ 117 (140)
T PRK14639 86 SIGELVKITTNE---------KEKFEGKIVSVDDENITLEN 117 (140)
T ss_pred hCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEE
No 492
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.89 E-value=4.5e+02 Score=26.49 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=49.8
Q ss_pred EEEEeCChHHHHHHHHHHhcccceEEEecc--CCc-hhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEE
Q 011491 359 TTVVPGTDESIGKLVQLLHKLIDLHEVQDI--THL-PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLE 435 (484)
Q Consensus 359 TIVV~gde~~ieql~kQL~KLidVi~V~dl--t~~-~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE 435 (484)
++.|.|. -.+-++.-|+-|.....+|.-. +++ -..-++|---.+- +..+ ..+.++.+. . +.=-+++|
T Consensus 172 ~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~-~~~~~~~~~-~------g~~D~vid 241 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV-NPQN-DDLDHYKAE-K------GYFDVSFE 241 (343)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCc-ccHHHHhcc-C------CCCCEEEE
Confidence 4555676 6899999999998875444322 222 1122233211111 1111 112222211 1 11247899
Q ss_pred EeCCHHHHHHHHHHhccCCcE
Q 011491 436 LTGDLNKIIALQRLLEPYGIC 456 (484)
Q Consensus 436 ~TG~~~Kidafi~lL~pyGIl 456 (484)
.+|.+.-++..++.|++.|.+
T Consensus 242 ~~G~~~~~~~~~~~l~~~G~i 262 (343)
T PRK09880 242 VSGHPSSINTCLEVTRAKGVM 262 (343)
T ss_pred CCCCHHHHHHHHHHhhcCCEE
Confidence 999988899999999999954
No 493
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=58 Score=33.61 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=42.0
Q ss_pred EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
+-+..+ |.-|+.|+..|..+||+|.+.-...-..+ -+-+-+.+ .+.+..|+..|+.+.||..|++
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P~~-~vev~~~~-lEk~qkL~q~L~e~edV~~iy~ 271 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIPLE-EVEVDVPA-LEKIQKLIQALYENEDVMFIYD 271 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeeccccccccCC-ccccCccc-hHHHHHHHHHHhhchhHHHHhh
Confidence 555555 55799999999999999995544322111 12222332 4566777777777777777653
No 494
>PRK14636 hypothetical protein; Provisional
Probab=21.84 E-value=6.2e+02 Score=24.45 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC----ChHHHHHHHHHHhcccceEEEe--------------
Q 011491 325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDLHEVQ-------------- 386 (484)
Q Consensus 325 pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----de~~ieql~kQL~KLidVi~V~-------------- 386 (484)
+-+-+.+..+....||-+..+.+-....+.+-|+.|--++ +-+..+++-++|..++|+....
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 3456778888999999999999877666777677774331 2477899999999999964321
Q ss_pred -ccCCchhHHHhh-heeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEe
Q 011491 387 -DITHLPFAEREL-ILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELT 437 (484)
Q Consensus 387 -dlt~~~~V~REL-~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~T 437 (484)
.|+...+..|-. -++||+..... +=-+.|.|++.++.++.++++.-
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~~-----~g~k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEPL-----DGRKQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEeccc-----CCeEEEEEEEEEEeCCEEEEEEc
Confidence 122333444433 24555543211 01157889999999999999873
No 495
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=21.40 E-value=1.5e+02 Score=24.02 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=44.6
Q ss_pred heeEEEeCCCCCHHHHHHHHHhcCcEEEEecCC--E--EEEEEeCChhHHHHHHHHhcc
Q 011491 161 LMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEH--A--LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 161 LaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~--s--l~iE~TG~~~KIdafi~~L~~ 215 (484)
++.+.|.++.+.-..|+..+..-||+|++.... + ..|.......++..|...|+.
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs 61 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRS 61 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHh
Confidence 456778888788889999999999999977642 3 778888888888888888875
No 496
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=21.32 E-value=1.4e+02 Score=24.79 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=44.2
Q ss_pred heeEEecCccchHHHHHHHHHcCcEEEEecC---CEEEEEEeCCHHHHHHHHHHhcc
Q 011491 399 ILIKIAVNTAARRDVLDIAKIFRARAVDVSD---HTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 399 ~LIKV~~~~~~r~eI~~la~ifrakIVDvs~---~si~iE~TG~~~Kidafi~lL~p 452 (484)
+.+.|.++.+.-..|+......||++.+... +...|+......++..|...|+.
T Consensus 7 ~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~ 63 (89)
T PF00679_consen 7 MSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRS 63 (89)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhc
Confidence 4566777777778999999999999999854 58999999999999888888764
No 497
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.31 E-value=1.9e+02 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcE-EEeecc
Q 011491 412 DVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGIC-EVARTG 462 (484)
Q Consensus 412 eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIl-EvaRTG 462 (484)
-..++.+.++++ .=-+++|.+|..+-++..++.|++.|.+ -+.-.+
T Consensus 46 ~~~~i~~~~~~~-----~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 46 FVEQIRELTGGR-----GVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHTTTS-----SEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cccccccccccc-----cceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 344566666662 3457899999999999999999999954 443333
No 498
>PRK14638 hypothetical protein; Provisional
Probab=21.15 E-value=6.9e+02 Score=23.42 Aligned_cols=101 Identities=12% Similarity=0.225 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-----hhHHHHHHHHHhcCcceeEEEe----cC-Cchhhhhhh
Q 011491 92 IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQLNKLVNVIKVED----IS-NEPHVEREL 161 (484)
Q Consensus 92 VL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-----e~~veQI~kQL~KLidVikV~d----lt-~~~~V~REL 161 (484)
+-..+.-+....||-+..+.+........+.+.++.+ -+..+.+-++|++++|+..... |. .+|-++|.|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCC
Confidence 3445667788999999999988776666788888743 3567889999999998653210 00 022333333
Q ss_pred -----------eeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC
Q 011491 162 -----------MLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG 201 (484)
Q Consensus 162 -----------aLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG 201 (484)
=.+||+... -+.|.|++.++..+.++++.-|
T Consensus 90 ~~~~~f~r~~G~~v~V~~~~---------~k~~~G~L~~~~~~~i~l~~~~ 131 (150)
T PRK14638 90 RGPKDYVRFTGKLAKIVTKD---------GKTFIGRIESFVDGTITISDEK 131 (150)
T ss_pred CCHHHHHHhCCCEEEEEECC---------CcEEEEEEEEEeCCEEEEEECC
Confidence 235555531 2668899999999999988543
No 499
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.68 E-value=8.4e+02 Score=24.21 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=57.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee---ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg---~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V 385 (484)
+.+.+++.|+|--....+|..+-.+.|-.|++-... .........||+-|+ .+.++..+.+|.++=.|..-
T Consensus 50 ~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP--~~~~~~~l~~l~~~g~v~~~ 123 (262)
T PF14257_consen 50 KTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVP--ADKFDSFLDELSELGKVTSR 123 (262)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEEC--HHHHHHHHHHHhccCceeee
Confidence 467999999999999999999999999889998886 344455666777676 46899999999988777553
No 500
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=20.23 E-value=1.3e+02 Score=33.27 Aligned_cols=53 Identities=32% Similarity=0.501 Sum_probs=42.3
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 320 lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.++|..|.|.|.-.+|+..|+||+=|+.|.++. .|..+++ |+..++-++-|+|
T Consensus 480 nvq~ss~i~~rmF~~l~e~giNvqMISQGAskv----NIS~ivn--e~ea~k~v~~lH~ 532 (559)
T KOG0456|consen 480 NVQNSSGILERMFCVLAENGINVQMISQGASKV----NISCIVN--EKEAEKCVQALHK 532 (559)
T ss_pred hhhhhhHHHHHHHHHHHhcCcceeeeccccccc----eEEEEEC--hHHHHHHHHHHHH
Confidence 378999999999999999999999999887754 2445555 5567777777765
Done!