Query 011491
Match_columns 484
No_of_seqs 349 out of 2237
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgc_A Acetolactate synthase, 100.0 1.4E-54 4.8E-59 410.2 18.9 171 297-472 16-188 (193)
2 2pc6_A Probable acetolactate s 100.0 2.8E-52 9.7E-57 386.0 17.0 161 311-471 1-161 (165)
3 2fgc_A Acetolactate synthase, 100.0 1.8E-51 6.1E-56 389.0 20.4 158 77-235 27-188 (193)
4 2f1f_A Acetolactate synthase i 100.0 2.8E-51 9.5E-56 378.8 18.4 160 312-471 1-161 (164)
5 2pc6_A Probable acetolactate s 100.0 7.9E-51 2.7E-55 376.3 18.0 158 77-234 2-161 (165)
6 2f1f_A Acetolactate synthase i 100.0 4.2E-50 1.4E-54 370.9 19.0 158 77-234 1-161 (164)
7 1u8s_A Glycine cleavage system 99.2 1.5E-09 5.1E-14 99.8 18.7 64 79-142 6-69 (192)
8 2f06_A Conserved hypothetical 99.0 4.2E-09 1.4E-13 92.5 14.6 126 310-455 2-133 (144)
9 2f06_A Conserved hypothetical 99.0 9.4E-09 3.2E-13 90.3 15.1 125 76-218 3-133 (144)
10 2ko1_A CTR148A, GTP pyrophosph 98.9 2.2E-08 7.5E-13 79.8 11.2 76 314-391 5-81 (88)
11 2ko1_A CTR148A, GTP pyrophosph 98.7 6.8E-08 2.3E-12 76.9 10.5 77 78-154 4-81 (88)
12 1u8s_A Glycine cleavage system 98.6 3.2E-07 1.1E-11 84.3 11.9 113 314-429 6-126 (192)
13 1zpv_A ACT domain protein; str 98.6 1.4E-07 4.6E-12 76.3 7.9 68 313-382 4-72 (91)
14 1zpv_A ACT domain protein; str 98.5 1.6E-07 5.6E-12 75.8 6.7 70 78-147 4-74 (91)
15 2nyi_A Unknown protein; protei 98.2 6.4E-05 2.2E-09 69.7 17.0 65 314-379 93-162 (195)
16 1y7p_A Hypothetical protein AF 98.0 1.5E-05 5.1E-10 77.1 9.4 81 313-395 3-86 (223)
17 1y7p_A Hypothetical protein AF 97.7 9.9E-05 3.4E-09 71.4 9.1 79 78-158 3-86 (223)
18 2jhe_A Transcription regulator 97.3 0.003 1E-07 55.0 12.4 103 316-436 2-105 (190)
19 2jhe_A Transcription regulator 97.1 0.0046 1.6E-07 53.8 11.6 69 81-152 2-71 (190)
20 1sc6_A PGDH, D-3-phosphoglycer 97.1 0.0021 7.3E-08 66.3 10.4 73 79-151 331-403 (404)
21 3mtj_A Homoserine dehydrogenas 97.0 0.0009 3.1E-08 70.2 7.4 72 312-383 357-430 (444)
22 3l76_A Aspartokinase; alloster 97.0 0.071 2.4E-06 57.7 21.6 288 85-455 277-590 (600)
23 2nyi_A Unknown protein; protei 96.9 0.0025 8.5E-08 59.0 8.5 67 75-142 89-162 (195)
24 3mtj_A Homoserine dehydrogenas 96.9 0.0024 8.3E-08 67.0 9.4 73 74-146 354-430 (444)
25 1sc6_A PGDH, D-3-phosphoglycer 96.9 0.0048 1.6E-07 63.7 11.4 73 314-388 331-403 (404)
26 3o1l_A Formyltetrahydrofolate 96.6 0.0053 1.8E-07 61.5 8.5 67 76-142 19-89 (302)
27 3n0v_A Formyltetrahydrofolate 96.5 0.0055 1.9E-07 60.8 8.0 65 77-141 6-73 (286)
28 3o1l_A Formyltetrahydrofolate 96.5 0.0061 2.1E-07 61.1 8.4 68 310-377 18-87 (302)
29 3lou_A Formyltetrahydrofolate 96.5 0.0054 1.8E-07 61.1 7.9 67 76-142 7-79 (292)
30 1ygy_A PGDH, D-3-phosphoglycer 96.5 0.0043 1.5E-07 65.8 7.4 71 79-151 454-526 (529)
31 2re1_A Aspartokinase, alpha an 96.4 0.01 3.6E-07 53.4 8.5 129 80-217 26-165 (167)
32 3obi_A Formyltetrahydrofolate 96.4 0.0077 2.6E-07 59.8 8.0 64 78-141 5-72 (288)
33 2re1_A Aspartokinase, alpha an 96.3 0.0095 3.3E-07 53.7 8.0 114 315-436 26-148 (167)
34 3k5p_A D-3-phosphoglycerate de 96.3 0.016 5.5E-07 60.4 10.6 73 79-151 343-415 (416)
35 1ygy_A PGDH, D-3-phosphoglycer 96.3 0.0069 2.4E-07 64.2 7.9 73 314-388 454-526 (529)
36 3nrb_A Formyltetrahydrofolate 96.2 0.0092 3.2E-07 59.2 7.7 62 78-139 6-69 (287)
37 3lou_A Formyltetrahydrofolate 96.1 0.012 4E-07 58.7 8.1 69 309-377 5-77 (292)
38 3p96_A Phosphoserine phosphata 96.1 0.041 1.4E-06 55.4 11.9 139 78-218 11-171 (415)
39 3obi_A Formyltetrahydrofolate 96.0 0.014 4.7E-07 58.0 8.1 64 314-377 6-71 (288)
40 3n0v_A Formyltetrahydrofolate 96.0 0.016 5.6E-07 57.4 8.3 65 312-376 6-71 (286)
41 3nrb_A Formyltetrahydrofolate 95.8 0.021 7.2E-07 56.6 8.2 64 313-376 6-69 (287)
42 3k5p_A D-3-phosphoglycerate de 95.6 0.044 1.5E-06 57.1 10.1 73 314-388 343-415 (416)
43 3p96_A Phosphoserine phosphata 95.4 0.056 1.9E-06 54.4 9.7 141 313-455 11-171 (415)
44 2qmx_A Prephenate dehydratase; 95.1 0.15 5.2E-06 50.6 11.4 73 313-385 199-274 (283)
45 2qmx_A Prephenate dehydratase; 94.7 0.16 5.5E-06 50.4 10.5 72 77-148 198-274 (283)
46 3mwb_A Prephenate dehydratase; 94.6 0.13 4.5E-06 51.8 9.6 73 309-381 196-272 (313)
47 2dt9_A Aspartokinase; protein- 94.5 0.1 3.5E-06 46.8 7.8 122 321-452 24-154 (167)
48 3mwb_A Prephenate dehydratase; 94.4 0.17 5.8E-06 51.0 10.1 72 76-147 198-275 (313)
49 3s1t_A Aspartokinase; ACT doma 94.1 0.2 6.9E-06 46.1 9.0 124 320-450 23-153 (181)
50 2qmw_A PDT, prephenate dehydra 94.0 0.14 4.7E-06 50.6 8.3 70 78-148 185-262 (267)
51 2dtj_A Aspartokinase; protein- 94.0 0.52 1.8E-05 42.8 11.6 129 81-217 17-157 (178)
52 3s1t_A Aspartokinase; ACT doma 93.8 0.15 5E-06 47.0 7.6 126 85-217 23-158 (181)
53 2dtj_A Aspartokinase; protein- 93.7 0.15 5.1E-06 46.4 7.3 125 316-451 17-153 (178)
54 3mah_A Aspartokinase; aspartat 93.6 0.22 7.6E-06 44.2 8.2 110 322-450 29-145 (157)
55 2dt9_A Aspartokinase; protein- 93.6 0.2 6.7E-06 44.9 7.9 122 86-215 24-154 (167)
56 1phz_A Protein (phenylalanine 93.2 0.2 6.7E-06 52.7 8.1 74 76-149 31-109 (429)
57 2qmw_A PDT, prephenate dehydra 92.5 0.54 1.8E-05 46.3 9.7 72 314-385 186-262 (267)
58 3luy_A Probable chorismate mut 91.9 0.59 2E-05 47.3 9.5 71 315-385 207-282 (329)
59 4go7_X Aspartokinase; transfer 91.8 0.22 7.4E-06 47.1 5.8 131 315-455 38-178 (200)
60 3mah_A Aspartokinase; aspartat 91.2 0.68 2.3E-05 41.1 8.2 111 87-214 29-146 (157)
61 3luy_A Probable chorismate mut 91.2 0.78 2.7E-05 46.5 9.5 69 80-148 207-282 (329)
62 1phz_A Protein (phenylalanine 91.1 0.63 2.1E-05 48.9 8.9 77 309-385 29-108 (429)
63 3ab4_A Aspartokinase; aspartat 91.0 0.86 3E-05 46.8 9.8 128 315-451 265-402 (421)
64 3ab4_A Aspartokinase; aspartat 91.0 1.3 4.4E-05 45.5 11.0 129 80-217 265-406 (421)
65 2nzc_A Hypothetical protein; s 89.8 1.9 6.7E-05 36.0 9.1 70 313-383 6-76 (86)
66 1rwu_A Hypothetical UPF0250 pr 89.2 3.3 0.00011 35.7 10.5 70 313-385 35-108 (109)
67 2h9z_A Hypothetical protein HP 88.2 1.5 5E-05 36.2 7.2 70 313-385 14-85 (86)
68 4go7_X Aspartokinase; transfer 87.4 0.72 2.5E-05 43.5 5.6 128 85-218 42-178 (200)
69 2nzc_A Hypothetical protein; s 86.8 3.5 0.00012 34.5 8.8 69 77-146 5-76 (86)
70 2lqj_A Mg2+ transport protein; 85.5 8.3 0.00028 32.2 10.6 72 314-386 8-84 (94)
71 3dhx_A Methionine import ATP-b 83.6 1.6 5.6E-05 36.7 5.4 57 162-218 22-90 (106)
72 2qrr_A Methionine import ATP-b 83.4 3.2 0.00011 34.3 7.1 60 163-222 25-97 (101)
73 3ced_A Methionine import ATP-b 83.2 2.2 7.5E-05 35.5 6.0 61 400-460 22-96 (98)
74 2qrr_A Methionine import ATP-b 82.8 2.7 9.3E-05 34.8 6.4 60 400-459 25-97 (101)
75 3tvi_A Aspartokinase; structur 82.3 5.1 0.00018 41.9 9.7 117 87-214 309-434 (446)
76 3l76_A Aspartokinase; alloster 82.2 9.8 0.00034 41.1 12.1 127 316-451 274-413 (600)
77 2qsw_A Methionine import ATP-b 81.4 3 0.0001 34.4 6.2 60 163-222 25-97 (100)
78 3dhx_A Methionine import ATP-b 80.9 3.6 0.00012 34.5 6.6 61 399-459 22-95 (106)
79 3ced_A Methionine import ATP-b 79.8 2.8 9.7E-05 34.8 5.5 61 163-223 22-96 (98)
80 3c1m_A Probable aspartokinase; 79.3 10 0.00035 39.6 10.8 124 80-214 319-464 (473)
81 3trg_A Acylphosphatase; fatty 76.4 3.8 0.00013 34.4 5.3 45 171-215 26-72 (98)
82 3c1m_A Probable aspartokinase; 76.2 2.5 8.6E-05 44.2 5.1 51 322-378 329-379 (473)
83 3trg_A Acylphosphatase; fatty 75.4 4.4 0.00015 34.0 5.5 43 410-452 28-72 (98)
84 3tvi_A Aspartokinase; structur 75.2 8.4 0.00029 40.3 8.7 116 322-450 309-433 (446)
85 2fhm_A Probable acylphosphatas 71.1 6.7 0.00023 32.2 5.5 45 171-215 16-62 (91)
86 1ulr_A Putative acylphosphatas 70.9 7.5 0.00026 31.7 5.7 44 171-214 16-61 (88)
87 2cdq_A Aspartokinase; aspartat 70.7 14 0.00049 39.2 9.3 114 322-451 352-479 (510)
88 3mgj_A Uncharacterized protein 70.2 7.5 0.00026 34.3 5.8 54 325-379 15-71 (118)
89 1ulr_A Putative acylphosphatas 70.1 8.1 0.00028 31.5 5.8 42 410-451 18-61 (88)
90 2fhm_A Probable acylphosphatas 69.6 7.7 0.00026 31.8 5.5 43 410-452 18-62 (91)
91 1gtd_A MTH169; synthetase, FGA 69.3 7.5 0.00026 31.7 5.3 55 315-376 3-66 (85)
92 2qsw_A Methionine import ATP-b 68.6 9.3 0.00032 31.4 5.9 60 400-459 25-97 (100)
93 1gtd_A MTH169; synthetase, FGA 68.4 7 0.00024 31.9 5.0 55 80-139 3-66 (85)
94 1rwu_A Hypothetical UPF0250 pr 68.0 30 0.001 29.7 9.1 68 78-148 35-108 (109)
95 2lqj_A Mg2+ transport protein; 67.5 31 0.0011 28.7 8.9 73 76-149 5-84 (94)
96 2wvf_A Hpnikr, putative nickel 67.2 60 0.0021 28.9 11.3 77 311-388 62-139 (148)
97 2dgb_A Hypothetical protein PU 66.9 10 0.00036 30.8 5.7 44 80-128 4-51 (84)
98 1w2i_A Acylphosphatase; hydrol 66.8 7.7 0.00026 31.9 5.0 44 171-214 18-63 (91)
99 2rjz_A PILO protein; structura 66.7 11 0.00038 33.6 6.4 64 89-152 44-112 (147)
100 1w2i_A Acylphosphatase; hydrol 66.3 8.5 0.00029 31.6 5.1 42 410-451 20-63 (91)
101 2dgb_A Hypothetical protein PU 66.0 12 0.00042 30.3 6.0 54 315-376 4-66 (84)
102 2cdq_A Aspartokinase; aspartat 66.0 28 0.00096 37.0 10.3 114 87-214 352-479 (510)
103 1urr_A CG18505 protein; acylph 65.8 9.2 0.00031 32.1 5.4 45 171-215 25-71 (102)
104 1urr_A CG18505 protein; acylph 65.6 9.3 0.00032 32.0 5.4 42 410-451 27-70 (102)
105 2bjd_A Acylphosphatase; hypert 65.4 8.9 0.0003 32.3 5.2 45 171-215 28-74 (101)
106 1q5y_A NIKR, nickel responsive 65.1 43 0.0015 27.1 9.1 72 314-386 5-77 (85)
107 2bjd_A Acylphosphatase; hypert 64.6 10 0.00035 31.9 5.4 43 410-452 30-74 (101)
108 2gv1_A Probable acylphosphatas 64.4 8.7 0.0003 31.6 4.9 43 171-213 18-62 (92)
109 2vh7_A Acylphosphatase-1; hydr 62.6 10 0.00034 31.6 5.0 44 171-214 22-67 (99)
110 2gv1_A Probable acylphosphatas 62.4 10 0.00034 31.2 4.9 41 410-450 20-62 (92)
111 2vh7_A Acylphosphatase-1; hydr 61.8 10 0.00036 31.5 4.9 42 410-451 24-67 (99)
112 1aps_A Acylphosphatase; hydrol 61.3 9.3 0.00032 31.8 4.5 43 410-452 23-67 (98)
113 1aps_A Acylphosphatase; hydrol 60.0 9 0.00031 31.8 4.2 45 171-215 21-67 (98)
114 2hza_A Nickel-responsive regul 59.3 85 0.0029 27.2 10.6 77 310-387 49-126 (133)
115 3mgj_A Uncharacterized protein 59.0 19 0.00064 31.7 6.2 53 90-142 15-71 (118)
116 1t4a_A PURS; tetramer, complex 58.8 19 0.00063 29.2 5.8 55 315-376 2-65 (84)
117 1q5y_A NIKR, nickel responsive 58.7 54 0.0019 26.4 8.6 70 80-149 6-77 (85)
118 2h9z_A Hypothetical protein HP 58.3 23 0.0008 28.9 6.4 68 78-148 14-85 (86)
119 1tdj_A Biosynthetic threonine 57.2 22 0.00077 37.8 7.7 77 313-394 337-415 (514)
120 2rjz_A PILO protein; structura 55.4 27 0.00094 31.0 6.9 68 323-390 43-113 (147)
121 1t4a_A PURS; tetramer, complex 55.2 20 0.00068 29.0 5.4 54 81-139 3-65 (84)
122 2hza_A Nickel-responsive regul 54.9 59 0.002 28.2 8.8 73 78-150 52-126 (133)
123 2wvf_A Hpnikr, putative nickel 54.6 64 0.0022 28.7 9.2 73 78-150 64-138 (148)
124 3krm_A Insulin-like growth fac 54.1 48 0.0016 28.8 8.2 128 316-452 4-152 (163)
125 2lxf_A Uncharacterized protein 52.0 14 0.00049 32.3 4.3 45 171-215 48-94 (121)
126 2lxf_A Uncharacterized protein 51.5 15 0.00051 32.2 4.3 43 409-451 49-93 (121)
127 2zw2_A Putative uncharacterize 51.1 27 0.00094 28.8 5.7 56 79-139 5-70 (92)
128 2zw2_A Putative uncharacterize 49.9 33 0.0011 28.4 6.0 56 314-376 5-70 (92)
129 1vq3_A Phosphoribosylformylgly 49.0 50 0.0017 27.7 7.0 55 315-376 16-80 (94)
130 2bj7_A Nickel responsive regul 48.3 1.4E+02 0.0047 26.0 10.9 77 310-387 51-128 (138)
131 1vq3_A Phosphoribosylformylgly 47.2 51 0.0017 27.7 6.8 55 80-139 16-80 (94)
132 2yx5_A UPF0062 protein MJ1593; 46.3 21 0.00071 28.8 4.2 55 315-376 2-66 (83)
133 1o51_A Hypothetical protein TM 46.2 15 0.00052 31.6 3.5 45 182-231 62-107 (114)
134 2bj7_A Nickel responsive regul 44.3 1.2E+02 0.004 26.5 9.0 73 78-150 54-128 (138)
135 2hh2_A KH-type splicing regula 42.9 40 0.0014 28.2 5.6 42 174-216 27-76 (107)
136 1o51_A Hypothetical protein TM 41.1 21 0.00071 30.8 3.6 35 419-453 62-97 (114)
137 2yx5_A UPF0062 protein MJ1593; 40.8 23 0.00079 28.6 3.6 54 81-139 3-66 (83)
138 2hh2_A KH-type splicing regula 40.7 44 0.0015 27.9 5.5 41 411-452 27-75 (107)
139 2j0w_A Lysine-sensitive aspart 39.5 28 0.00096 36.2 5.0 77 314-406 306-394 (449)
140 2p2r_A Poly(RC)-binding protei 38.3 52 0.0018 25.4 5.2 42 173-215 24-70 (76)
141 2dcl_A Hypothetical UPF0166 pr 37.0 23 0.00078 31.2 3.2 46 181-231 57-103 (127)
142 1tdj_A Biosynthetic threonine 36.6 54 0.0019 34.9 6.6 116 78-218 337-460 (514)
143 2jvz_A KH type-splicing, FAR u 35.6 1.7E+02 0.0059 25.0 8.8 92 123-215 51-156 (164)
144 2j0w_A Lysine-sensitive aspart 35.4 47 0.0016 34.5 5.8 79 78-170 305-395 (449)
145 1wvn_A Poly(RC)-binding protei 34.4 85 0.0029 24.6 6.0 42 174-216 26-72 (82)
146 2p2r_A Poly(RC)-binding protei 33.8 87 0.003 24.1 5.9 41 411-452 25-70 (76)
147 2dcl_A Hypothetical UPF0166 pr 33.4 30 0.001 30.4 3.4 35 419-453 58-93 (127)
148 1zzk_A Heterogeneous nuclear r 33.2 90 0.0031 24.5 5.9 42 173-215 26-72 (82)
149 1x4n_A FAR upstream element bi 32.9 69 0.0024 25.8 5.3 42 173-215 34-80 (92)
150 1dtj_A RNA-binding neurooncolo 31.4 1E+02 0.0035 23.5 5.9 42 173-215 22-71 (76)
151 1wvn_A Poly(RC)-binding protei 31.3 1E+02 0.0035 24.1 5.9 41 411-452 26-71 (82)
152 1zzk_A Heterogeneous nuclear r 30.6 1E+02 0.0036 24.1 5.9 41 411-452 27-72 (82)
153 1vr9_A CBS domain protein/ACT 30.5 11 0.00036 34.3 0.0 58 317-377 141-198 (213)
154 1j5k_A Heterogeneous nuclear r 29.6 92 0.0031 24.9 5.5 42 173-215 33-79 (89)
155 3krm_A Insulin-like growth fac 29.5 46 0.0016 29.0 4.0 126 81-215 4-152 (163)
156 2hh3_A KH-type splicing regula 29.2 73 0.0025 26.7 5.0 42 173-215 30-76 (106)
157 1j4w_A FUSE binding protein; s 29.1 2.9E+02 0.0099 24.1 10.7 130 315-451 3-171 (174)
158 1x4n_A FAR upstream element bi 29.1 1.1E+02 0.0038 24.6 6.0 41 411-452 35-80 (92)
159 2axy_A Poly(RC)-binding protei 28.7 86 0.0029 24.2 5.0 40 174-214 25-67 (73)
160 1ec6_A RNA-binding protein NOV 27.8 1.4E+02 0.0047 23.6 6.2 41 174-215 23-71 (87)
161 1rq8_A Conserved hypothetical 27.6 89 0.0031 26.6 5.3 53 365-436 29-85 (104)
162 1dtj_A RNA-binding neurooncolo 27.2 1.3E+02 0.0045 22.9 5.9 41 411-452 23-71 (76)
163 1j5k_A Heterogeneous nuclear r 27.2 1.1E+02 0.0036 24.5 5.5 41 411-452 34-79 (89)
164 2axy_A Poly(RC)-binding protei 26.3 1E+02 0.0036 23.7 5.1 40 411-451 25-67 (73)
165 1jo0_A Hypothetical protein HI 25.3 3E+02 0.01 23.0 8.7 51 128-197 30-84 (98)
166 1vig_A Vigilin; RNA-binding pr 25.1 70 0.0024 24.6 3.9 40 175-215 26-68 (71)
167 1ec6_A RNA-binding protein NOV 24.9 1.6E+02 0.0056 23.1 6.2 41 411-452 23-71 (87)
168 2hh3_A KH-type splicing regula 24.0 1.3E+02 0.0045 25.1 5.6 41 411-452 31-76 (106)
169 1rq8_A Conserved hypothetical 23.8 1.3E+02 0.0045 25.6 5.6 53 128-199 29-85 (104)
170 1we8_A Tudor and KH domain con 22.4 1.2E+02 0.0041 24.9 5.1 42 173-215 34-82 (104)
171 1vig_A Vigilin; RNA-binding pr 21.7 81 0.0028 24.3 3.6 40 412-452 26-68 (71)
172 3lh2_S 4E10_1VI7A_S0_002_N (T8 21.1 72 0.0025 24.6 3.2 55 399-453 8-63 (76)
173 1jo0_A Hypothetical protein HI 20.9 3.7E+02 0.013 22.4 9.3 35 400-434 46-84 (98)
174 2opv_A KHSRP protein; KH domai 20.9 1.1E+02 0.0038 24.1 4.4 42 173-215 33-81 (85)
175 4djd_C C/Fe-SP, corrinoid/iron 20.7 2.6E+02 0.009 29.4 8.3 128 79-219 91-227 (446)
176 1we8_A Tudor and KH domain con 20.1 1.4E+02 0.0049 24.5 5.0 41 411-452 35-82 (104)
No 1
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.4e-54 Score=410.15 Aligned_cols=171 Identities=35% Similarity=0.548 Sum_probs=156.5
Q ss_pred ccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491 297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (484)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL 376 (484)
.|+|||-+.+. .|+|+|+++|+|+||+|+||+++|+||||||+||+++++++++++||||+|+|+++.++||.|||
T Consensus 16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL 91 (193)
T 2fgc_A 16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA 91 (193)
T ss_dssp ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 58999988654 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceEEEeccCC--chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC
Q 011491 377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG 454 (484)
Q Consensus 377 ~KLidVi~V~dlt~--~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyG 454 (484)
+||+||++|.++++ .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+|||
T Consensus 92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~g 170 (193)
T 2fgc_A 92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ 170 (193)
T ss_dssp TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGG
T ss_pred cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhC
Confidence 99999999999999 999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred cEEEeecceeEeecCCCc
Q 011491 455 ICEVARTGRVALVRESGV 472 (484)
Q Consensus 455 IlEvaRTG~vAl~Rg~~~ 472 (484)
|+|++|||++||.||+..
T Consensus 171 i~E~~RtG~val~Rg~~~ 188 (193)
T 2fgc_A 171 VEEIARTGIVAMNRWNVK 188 (193)
T ss_dssp EEEEEECCCEEEECCCC-
T ss_pred CEEEEccChhheecCCcc
Confidence 999999999999999864
No 2
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=2.8e-52 Score=385.98 Aligned_cols=161 Identities=37% Similarity=0.577 Sum_probs=157.4
Q ss_pred CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
|.|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||++.++++.++||.+||+||+||++|.++++
T Consensus 1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~ 80 (165)
T 2pc6_A 1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS 80 (165)
T ss_dssp -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCC
Q 011491 391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES 470 (484)
Q Consensus 391 ~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~ 470 (484)
.++++||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++||+++|+||||+|++|||++||.||+
T Consensus 81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~ 160 (165)
T 2pc6_A 81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160 (165)
T ss_dssp SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011491 471 G 471 (484)
Q Consensus 471 ~ 471 (484)
.
T Consensus 161 ~ 161 (165)
T 2pc6_A 161 R 161 (165)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.8e-51 Score=388.98 Aligned_cols=158 Identities=39% Similarity=0.634 Sum_probs=153.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCC-
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN- 153 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~- 153 (484)
+|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+|+++++.++||.+||+||+||++|.++++
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 46999999999999999999999999999999999999999874 999999999999999999999999999999999
Q ss_pred -chhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 011491 154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232 (484)
Q Consensus 154 -~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg 232 (484)
.++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||++||.||
T Consensus 107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg 185 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW 185 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 011491 233 KLG 235 (484)
Q Consensus 233 ~~~ 235 (484)
+..
T Consensus 186 ~~~ 188 (193)
T 2fgc_A 186 NVK 188 (193)
T ss_dssp CC-
T ss_pred Ccc
Confidence 854
No 4
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=2.8e-51 Score=378.78 Aligned_cols=160 Identities=34% Similarity=0.545 Sum_probs=156.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||++.++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC-cEEEeecceeEeecCC
Q 011491 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG-ICEVARTGRVALVRES 470 (484)
Q Consensus 392 ~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyG-IlEvaRTG~vAl~Rg~ 470 (484)
++++||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++||+++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred C
Q 011491 471 G 471 (484)
Q Consensus 471 ~ 471 (484)
.
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=7.9e-51 Score=376.33 Aligned_cols=158 Identities=41% Similarity=0.633 Sum_probs=153.8
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
.|+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||.+||+||+||++|.++++.
T Consensus 2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~ 81 (165)
T 2pc6_A 2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE 81 (165)
T ss_dssp CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 36899999999999999999999999999999999999998864 9999999999999999999999999999999999
Q ss_pred hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL 234 (484)
Q Consensus 155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~ 234 (484)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus 82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~ 161 (165)
T 2pc6_A 82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER 161 (165)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=4.2e-50 Score=370.90 Aligned_cols=158 Identities=37% Similarity=0.653 Sum_probs=153.5
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++. |||+++++++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999998764 9999999999999999999999999999999999
Q ss_pred hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 011491 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK 233 (484)
Q Consensus 155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlE~aRTG~iAl~Rg~ 233 (484)
++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999997
Q ss_pred C
Q 011491 234 L 234 (484)
Q Consensus 234 ~ 234 (484)
+
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.17 E-value=1.5e-09 Score=99.84 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=53.3
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL 142 (484)
+++|+|+..|+||++++|+++++++|+||.++....+.+.-.|++++.+++...+++.++|.++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLL 69 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999998875443347788877666778888888544
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.04 E-value=4.2e-09 Score=92.49 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=89.2
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
..||.|.|++.++|+||+|++|+++|+++|+||+++++..+.++++.|++ + .+.+...++.++..-. +...
T Consensus 2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~--v~~~---- 72 (144)
T 2f06_A 2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFA--VNIT---- 72 (144)
T ss_dssp CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCC--EEEE----
T ss_pred CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCe--Eeee----
Confidence 46889999999999999999999999999999999999988887887887 3 4666666666654222 1111
Q ss_pred CchhHHHhhheeEEecCccchHHHHHHHHHcCcEEEE---e-cCCE--EEEEEeCCHHHHHHHHHHhccCCc
Q 011491 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVD---V-SDHT--ITLELTGDLNKIIALQRLLEPYGI 455 (484)
Q Consensus 390 ~~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVD---v-s~~s--i~iE~TG~~~Kidafi~lL~pyGI 455 (484)
.+.-+.++-.+..-.++.++....+.+|.. . ++.. ++++. +..+...+.|+..|.
T Consensus 73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp -------EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 233445655555567788888777888833 2 3443 44555 366667777777664
No 9
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.99 E-value=9.4e-09 Score=90.25 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=89.0
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~ 155 (484)
.||.|.|+++++|+||+|+||+++|+++|+||+++++..+.+++.+++++ .|.+...++.++..-.+...
T Consensus 3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~--------- 72 (144)
T 2f06_A 3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT--------- 72 (144)
T ss_dssp SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence 57899999999999999999999999999999999999887777655654 45555666655543221111
Q ss_pred hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 011491 156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI 218 (484)
Q Consensus 156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVD---v-s~~--sl~iE~TG~~~KIdafi~~L~~fGI 218 (484)
.+.-+.+.-.|..-.++.++....+.+|.. . ++. +++++. +..+..++.|+.-|.
T Consensus 73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 334556666677777888888888888843 2 333 344555 356666777776664
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.86 E-value=2.2e-08 Score=79.79 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=66.5
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
.+.|.+.+.|+||+|++|+++|++.|+||.++.+....+ ...+++.+. .+.+.+++++++|+++-+|.+|..+...
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~ 81 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL 81 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 578999999999999999999999999999999987543 778888776 4667899999999999999999877654
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.74 E-value=6.8e-08 Score=76.89 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=64.4
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++-+|.+|..+..-
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~ 81 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL 81 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3578999999999999999999999999999999987554223666665 3567899999999999999999877653
No 12
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.59 E-value=3.2e-07 Score=84.26 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=81.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc----eEEEeccC
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT 389 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLid----Vi~V~dlt 389 (484)
++.|+|...|+||++++|+++++++|+||.++....+ .+...|++++.+++...++|.++|.++.+ ...+...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5899999999999999999999999999999888774 46677788887766778899999887653 44455444
Q ss_pred CchhHHHhhheeEEecCccchH----HHHHHHHHcCcEEEEecC
Q 011491 390 HLPFAERELILIKIAVNTAARR----DVLDIAKIFRARAVDVSD 429 (484)
Q Consensus 390 ~~~~V~REL~LIKV~~~~~~r~----eI~~la~ifrakIVDvs~ 429 (484)
..+. .++...++|.+...+|+ +|.++...+++.|.++..
T Consensus 84 ~~~~-~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~ 126 (192)
T 1u8s_A 84 PHDH-QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA 126 (192)
T ss_dssp CCCC-CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCC-ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhh
Confidence 3321 34444455554444454 455666677888877543
No 13
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.58 E-value=1.4e-07 Score=76.27 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcccce
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL 382 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL~KLidV 382 (484)
++++|++...|+||+|++|+++++.+|+||.++...... +...+++.+... ...+++|.++|.++-+-
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998765 677777777633 35789999999987654
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.51 E-value=1.6e-07 Score=75.78 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=57.0
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhHHHHHHHHHhcCcceeE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIK 147 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-e~~veQI~kQL~KLidVik 147 (484)
++++|++...|+||+|++|+++++++|+||.+++.........+++.+..+ ...++++.++|.++-+...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~ 74 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN 74 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999998765322366666533 3579999999998876543
No 15
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.19 E-value=6.4e-05 Score=69.73 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=49.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKL 379 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te----~~~iSRiTIVV~g-de~~ieql~kQL~KL 379 (484)
+|+|.+...|+||++.+|+++|+++|.||..+...... ..+.-.|.+.+.. +... ++|.+.|.++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence 68999999999999999999999999999998876443 3456666666653 2334 6666666643
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=98.03 E-value=1.5e-05 Score=77.11 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=65.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC---CCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~---~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt 389 (484)
|..+|.+..+|+||+|+.|+.+++..+.||.++++..... .+...|+|-+... .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 5789999999999999999999999999999999977641 4688888666644 9999999999999999999987
Q ss_pred CchhHH
Q 011491 390 HLPFAE 395 (484)
Q Consensus 390 ~~~~V~ 395 (484)
+-.-++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 765554
No 17
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.71 E-value=9.9e-05 Score=71.40 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=61.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
|..+|.+..+|+||+|+.|+.+++..+.||.++++.... +. ..++|-++.. .++.++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 467999999999999999999999999999999998764 32 2366555543 9999999999999999999886
Q ss_pred Cchhhh
Q 011491 153 NEPHVE 158 (484)
Q Consensus 153 ~~~~V~ 158 (484)
.-..++
T Consensus 81 ~~~~i~ 86 (223)
T 1y7p_A 81 SFERVF 86 (223)
T ss_dssp CHHHHT
T ss_pred chhhhc
Confidence 644443
No 18
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.30 E-value=0.003 Score=55.03 Aligned_cols=103 Identities=13% Similarity=0.234 Sum_probs=74.6
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCchhH
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~~~V 394 (484)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +. +.+.++ .+.+.+..+..++.++-++..+....-.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~- 75 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS- 75 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence 47899999999999999999999999999999665 54 555555 466789999999999999998876553322
Q ss_pred HHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEE
Q 011491 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEL 436 (484)
Q Consensus 395 ~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~ 436 (484)
...+..+..+.+....=|+-+..+.-++-+
T Consensus 76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~~~ 105 (190)
T 2jhe_A 76 ------------EREHLALSALLEALPEPVLSVDMKSKVDMA 105 (190)
T ss_dssp ------------THHHHHHHHHHHHCSSCEEEECTTCBEEEE
T ss_pred ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEEEE
Confidence 112234445555555555555555544443
No 19
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.12 E-value=0.0046 Score=53.83 Aligned_cols=69 Identities=12% Similarity=0.304 Sum_probs=58.8
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecC
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt 152 (484)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +.+.+.+. .+.+.+..+..+++++-++..+....
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 47899999999999999999999999999999665 44656555 45678999999999999999887654
No 20
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.06 E-value=0.0021 Score=66.33 Aligned_cols=73 Identities=14% Similarity=0.302 Sum_probs=62.1
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
.+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.+-+++....-+.++++|+++-.|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 4678899999999999999999999999999999985554567777876544678999999999999998754
No 21
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=97.04 E-value=0.0009 Score=70.23 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=58.3
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi 383 (484)
..+|.|.+.+.|+||||.+|+++|...|++|+|+...+.. ..+...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 3679999999999999999999999999999998876542 233468888887 57888999999999987664
No 22
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.97 E-value=0.071 Score=57.70 Aligned_cols=288 Identities=11% Similarity=0.130 Sum_probs=161.9
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCCh-hHHHHHHHHHhcCc-------ceeEEEecCCch
Q 011491 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTE-RVLRQVVEQLNKLV-------NVIKVEDISNEP 155 (484)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde-~~veQI~kQL~KLi-------dVikV~dlt~~~ 155 (484)
.+.+.||++.||-+.|++.|+||+-++.+..+.. .-+++++..++ ....++.+++.+-+ ..-+|.
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~------ 350 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII------ 350 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE------
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE------
Confidence 5678999999999999999999999987765543 23888887543 22333333333221 111222
Q ss_pred hhhhhheeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceee
Q 011491 156 HVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIAL 229 (484)
Q Consensus 156 ~V~RELaLiKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlE~aRTG~iAl 229 (484)
+.+.+++|-|--. +.--..+++.....+.+|.-++....-|-+.=+.+..+..++.|.. |..-.
T Consensus 351 -~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~--------- 420 (600)
T 3l76_A 351 -VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL--------- 420 (600)
T ss_dssp -EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB---------
T ss_pred -ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC---------
Confidence 4566777776533 2334466676666666665554433444444455555555555543 33110
Q ss_pred ecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCC
Q 011491 230 RREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDP 309 (484)
Q Consensus 230 ~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (484)
. + .. .. -++.|. ++.. |+-.+.
T Consensus 421 --t-----~------------------------------~~------~~---~~~~~~-------~~v~---Gia~~~-- 442 (600)
T 3l76_A 421 --S-----P------------------------------PK------NQ---TDTSHL-------PAVR---GVALDQ-- 442 (600)
T ss_dssp --C-----C------------------------------CC------CC---CC---C-------CSCC---EEEEEC--
T ss_pred --C-----C------------------------------cc------cc---cccccc-------CceE---EEEeeC--
Confidence 0 0 00 00 000010 0111 111111
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CC--eEEEEEEEeC-ChHHHHHHHHHHhcccceEE
Q 011491 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPG-TDESIGKLVQLLHKLIDLHE 384 (484)
Q Consensus 310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~--~~--iSRiTIVV~g-de~~ieql~kQL~KLidVi~ 384 (484)
+..+-++. -+.|+||+..||.+.+++.|+|++-+.....+. .+ ...|+++++. +-+...++++++.+-++-.+
T Consensus 443 -~~a~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~ 520 (600)
T 3l76_A 443 -DQAQIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAA 520 (600)
T ss_dssp -SEEEEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCE
T ss_pred -CEEEEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCce
Confidence 12233443 589999999999999999999999998887764 24 6789999983 33344555555554443333
Q ss_pred EeccCCchhHHHhhheeEEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc-cCCc
Q 011491 385 VQDITHLPFAERELILIKIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE-PYGI 455 (484)
Q Consensus 385 V~dlt~~~~V~REL~LIKV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~-pyGI 455 (484)
+.. ...+++|-|--. +..-..+++....-+-+|.-++..-+.|-+.=+.+..+..++.|. .|++
T Consensus 521 v~~-------~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l 590 (600)
T 3l76_A 521 IVV-------NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL 590 (600)
T ss_dssp EEE-------ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred EEE-------eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence 322 233555544311 111245666666666666666655566666556666666666653 4654
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.92 E-value=0.0025 Score=59.01 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=50.4
Q ss_pred ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeC-ChhHHHHHHHHHhcC
Q 011491 75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNKL 142 (484)
Q Consensus 75 ~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~~~--iTIVV~g-de~~veQI~kQL~KL 142 (484)
....+++|.|...|+||++++|+++|+++|.||..+...... ..++ |++.+.. +... ++|.+.|.++
T Consensus 89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV 162 (195)
T ss_dssp TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence 345679999999999999999999999999999999876443 2344 5555543 2334 7777777644
No 24
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.92 E-value=0.0024 Score=66.99 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=57.5
Q ss_pred cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--C-CcEEEEEEe-CChhHHHHHHHHHhcCccee
Q 011491 74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--D-KALFTIVVS-GTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d-~~~iTIVV~-gde~~veQI~kQL~KLidVi 146 (484)
.+-..+|.|.+.+.|+||||.+|+++|+..|++|+|+...+.. + ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus 354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 3345789999999999999999999999999999999876542 1 123666666 56889999999999986664
No 25
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=96.91 E-value=0.0048 Score=63.73 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=62.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
.+.|.+.=+|+||++.+|+.+|+..|+||.++.++. ..+..-+.+-+++....-+.++++|+++-.|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 456888889999999999999999999999999998 5677778888887644667999999999999998754
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.57 E-value=0.0053 Score=61.50 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=52.1
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcC
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL 142 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KL 142 (484)
++++++|++...|+||+.++||+.++.+|.||..++.-.....++ |.+.+..++ ..++++...|+.+
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 577899999999999999999999999999999999875444566 556665432 3466666666443
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.50 E-value=0.0055 Score=60.82 Aligned_cols=65 Identities=3% Similarity=-0.067 Sum_probs=49.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhHHHHHHHHHhc
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNK 141 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-e~~veQI~kQL~K 141 (484)
|.+++|++...|+||..++|++.++.+|.||..++.......+. |.+.++.+ +..++++...++.
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE 73 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence 55789999999999999999999999999999999774444565 56666543 2345666666543
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.50 E-value=0.0061 Score=61.05 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHh
Q 011491 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLH 377 (484)
Q Consensus 310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~ 377 (484)
+|+.+++|++.-.|+||+..+|++.++.+|.||..+........+.--|.+.+..++ ...++|.+.|+
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 688899999999999999999999999999999999887554556655656665322 23555555543
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.49 E-value=0.0054 Score=61.11 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=50.3
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hhHHHHHHHHHhcC
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNKL 142 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd----e~~veQI~kQL~KL 142 (484)
.|++++|++...|+||..++|++.++.+|.||..++.......+. |.+.+..+ ...++++...|+.+
T Consensus 7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 356799999999999999999999999999999999774444565 55555544 23466666666443
No 30
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.45 E-value=0.0043 Score=65.80 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=57.7
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
-|+|-+...|+||++.+|+.++...|+||..+.++..... +.|.|.++. ..-+.+.++|.++-+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence 4899999999999999999999999999999999987644 357777763 3345677777787888777654
No 31
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=96.39 E-value=0.01 Score=53.42 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=78.2
Q ss_pred EEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 80 htISil-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ + .++++++.++ .++..+.|+++..=+... .-.
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~--~~~a~~~l~~~~~~l~~~----~i~ 98 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGD--YKQTLEILSERQDSIGAA----SID 98 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGG--HHHHHHHHHHSSTTTTCS----EEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechH--HHHHHHHHHHHHHHcCCc----eEE
Confidence 456666 79999999999999999999999999876544 4 4888887533 233334444332111110 112
Q ss_pred hhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 011491 157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (484)
Q Consensus 157 V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG 217 (484)
+.+.++++-|-... .--..+++....++..| +..+..++.+=+ +.+..+..++.|. .|+
T Consensus 99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN 165 (167)
T ss_dssp EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence 45667888876543 33457888888877777 444555555555 3344444455443 354
No 32
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.35 E-value=0.0077 Score=59.81 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhc
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK 141 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~K 141 (484)
.+++|++...|+||..++|++.++.+|.||..++.-.+...+. |.+.++.++ ..++++...|+.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~ 72 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV 72 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999865555565 555555332 356677666644
No 33
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=96.35 E-value=0.0095 Score=53.68 Aligned_cols=114 Identities=10% Similarity=0.161 Sum_probs=71.5
Q ss_pred EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCch
Q 011491 315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP 392 (484)
Q Consensus 315 htLsil-VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~ 392 (484)
..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-+....|
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------- 97 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------- 97 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE-------
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE-------
Confidence 456666 79999999999999999999999999876554 5667999998532 2344444444333332111
Q ss_pred hHHHhhheeEEecCc-----cchHHHHHHHHHcCcEE--EEecCCEEEEEE
Q 011491 393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARA--VDVSDHTITLEL 436 (484)
Q Consensus 393 ~V~REL~LIKV~~~~-----~~r~eI~~la~ifrakI--VDvs~~si~iE~ 436 (484)
.+.+.++++-|-... .--..+++....++..| +..+..++.+=+
T Consensus 98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv 148 (167)
T 2re1_A 98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI 148 (167)
T ss_dssp EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE
T ss_pred EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE
Confidence 123456677765432 22356777777777777 444555555554
No 34
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.31 E-value=0.016 Score=60.37 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=61.0
Q ss_pred EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491 79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151 (484)
Q Consensus 79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl 151 (484)
.|.|.+.=+|.||+|.+|+.+|+..|+||+...-...++-++..+=+++....-+.+.++|+++-.|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 5789999999999999999999999999999987666665665555653355678999999999999998754
No 35
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.30 E-value=0.0069 Score=64.21 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=60.2
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
.|+|-+...|+||++.+|+.++...|+||.++.++.....+..=|.|.++.. .-+.+.++|.++.+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 3899999999999999999999999999999999998877777777777733 335566677777777777654
No 36
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.20 E-value=0.0092 Score=59.22 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=46.1
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHH
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL 139 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL 139 (484)
++++|++...|+||+.++|++.++.+|.||..++.-.+...++ |.+.+..+...++++...|
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f 69 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF 69 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999865555566 5555554332333444444
No 37
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.15 E-value=0.012 Score=58.69 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHHh
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLH 377 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd----e~~ieql~kQL~ 377 (484)
+..+++++|++.-.|+||+..+|++.++.+|.||..+........+.--|.+.+..+ ....++|...|+
T Consensus 5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~ 77 (292)
T 3lou_A 5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE 77 (292)
T ss_dssp ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence 345668999999999999999999999999999999988754445554455554433 223555555443
No 38
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.09 E-value=0.041 Score=55.43 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=85.7
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChh--HHHHHHHHHhcCc---c-eeEEE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKVE 149 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~--~veQI~kQL~KLi---d-VikV~ 149 (484)
++++|++.-.|+||+.++|++.++++|.||..+.... ..+. |.+.+..++. .++++.+.|..+- . -+++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 5789999999999999999999999999999998764 3455 5555665443 3467777776552 2 24455
Q ss_pred ecCCchhhh-hhheeEEEeCCC---CCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCCh---hHHH-HHHHHhcc
Q 011491 150 DISNEPHVE-RELMLIKLNGDT---STWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDP---GKMV-AVQRNLSK 215 (484)
Q Consensus 150 dlt~~~~V~-RELaLiKV~~~~---~~r~eI~~l~~~FrAkIVDvs~~s------l~iE~TG~~---~KId-afi~~L~~ 215 (484)
+.+...... ....++-+-... ..-.+|..+...++.+|-++..-+ +-+.+.+++ +.+. ++.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~ 168 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE 168 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence 544432222 233444443332 233456666666678888775544 335555654 3333 34444555
Q ss_pred CCc
Q 011491 216 FGI 218 (484)
Q Consensus 216 fGI 218 (484)
+++
T Consensus 169 ~~v 171 (415)
T 3p96_A 169 EHV 171 (415)
T ss_dssp HTC
T ss_pred cCc
Confidence 664
No 39
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.05 E-value=0.014 Score=58.02 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=47.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHh
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLH 377 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~ 377 (484)
+++|++.-.|+||+..+|++.++.+|.||..+....+...+.--|.+.+. +....+++|...|+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~ 71 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG 71 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence 58999999999999999999999999999999986555555544555444 22224555555543
No 40
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.99 E-value=0.016 Score=57.40 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=47.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHH
Q 011491 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLL 376 (484)
Q Consensus 312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL 376 (484)
|.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.+ +...++|...|
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f 71 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL 71 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999988754455655555555532 12344444444
No 41
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.80 E-value=0.021 Score=56.64 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=48.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL 376 (484)
++++|++.-.|+||+..+|++.++.+|.||..+....+...+.--|.+.+..+....++|...|
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f 69 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF 69 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999875556666666666664332333444444
No 42
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=95.62 E-value=0.044 Score=57.12 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
.|-|.+.=+|.||+|.+|+.+|+..|+||+.+.-....+-++ ..+=+++..+.-+.+.++|+++-.|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 478999999999999999999999999999988665544443 4444443356778999999999999998754
No 43
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.40 E-value=0.056 Score=54.39 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=85.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhcc---cce-EEEe
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKL---IDL-HEVQ 386 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~--~ieql~kQL~KL---idV-i~V~ 386 (484)
.+++|++.-.|+||+.++|++.++++|.||..+..... .+.--|.+.+..++. ..++|.+.|..+ .++ +++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 46899999999999999999999999999999888653 455555555655443 336666666554 222 3455
Q ss_pred ccCCchhHH-HhhheeEEecC---ccchHHHHHHHHHcCcEEEEecCCE------EEEEEeCCH---HHHH-HHHHHhcc
Q 011491 387 DITHLPFAE-RELILIKIAVN---TAARRDVLDIAKIFRARAVDVSDHT------ITLELTGDL---NKII-ALQRLLEP 452 (484)
Q Consensus 387 dlt~~~~V~-REL~LIKV~~~---~~~r~eI~~la~ifrakIVDvs~~s------i~iE~TG~~---~Kid-afi~lL~p 452 (484)
+.+...... +...++-+-.. +..-.+|.++...++.+|-+...-+ +-+.+.+.+ ..+. ++.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~ 168 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE 168 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence 444332111 12333333322 2223456666666778888775544 335555554 3333 34455566
Q ss_pred CCc
Q 011491 453 YGI 455 (484)
Q Consensus 453 yGI 455 (484)
+++
T Consensus 169 ~~v 171 (415)
T 3p96_A 169 EHV 171 (415)
T ss_dssp HTC
T ss_pred cCc
Confidence 665
No 44
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=95.05 E-value=0.15 Score=50.59 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=59.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V 385 (484)
.|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|-+.| ++..+.+.++.|++.-.-+++
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 4667888889999999999999999999999999988765 466677777776 456799999999987655444
No 45
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=94.68 E-value=0.16 Score=50.39 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=57.3
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCcceeEE
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVikV 148 (484)
-.|-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + +-|-+.| ++..+++.++.|++.-.-+++
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 357788888899999999999999999999999998887654 3 3 5555655 567789999999887654444
No 46
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.56 E-value=0.13 Score=51.80 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=58.7
Q ss_pred CCCceEEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccc
Q 011491 309 PSGLRSHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLID 381 (484)
Q Consensus 309 ~~~~~~htLsilVe-N~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLid 381 (484)
+.+-.|-+|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.| ++..+.+.++.|++.-.
T Consensus 196 ~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~ 272 (313)
T 3mwb_A 196 RTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
T ss_dssp CCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence 34556778888884 999999999999999999999999888754 456677777876 56678888888887643
No 47
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=94.46 E-value=0.1 Score=46.80 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=71.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCchhHHHhh
Q 011491 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL 398 (484)
Q Consensus 321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~~V~REL 398 (484)
+.|+||++.||.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .+. +.+.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999887652 345667999998433 2333444443322332 332 23456
Q ss_pred heeEEecCccc-h----HHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 399 ILIKIAVNTAA-R----RDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 399 ~LIKV~~~~~~-r----~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
+++-|-...-. + ..+++.....+-+| +.-++..+ -+.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~i--s~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRI--SVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEE--EEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEE--EEEEeHHHHHHHHHHHHH
Confidence 67766543211 2 34555555545555 44344433 333344555555665543
No 48
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.43 E-value=0.17 Score=50.96 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=55.3
Q ss_pred cceEEEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhHHHHHHHHHhcCcceeE
Q 011491 76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVNVIK 147 (484)
Q Consensus 76 ~~~khtISilV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--de~~veQI~kQL~KLidVik 147 (484)
+..|-.|.+.+ +|+||.|.++.+.|+.||+|+..|---|+... .+ +-|-+.| ++..+.+.++.|++.-.-++
T Consensus 198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~k 275 (313)
T 3mwb_A 198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATR 275 (313)
T ss_dssp SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCE
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEE
Confidence 44577888888 49999999999999999999999988887654 23 5555655 56778888888887644333
No 49
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=94.07 E-value=0.2 Score=46.05 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=72.8
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCchhHHHh
Q 011491 320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAERE 397 (484)
Q Consensus 320 lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~~V~RE 397 (484)
-+.|+||++.||.+.|++.|+||+-++...++ +.+...++++++.++ +...++++++.+-+...+|.. ...
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~-------~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLY-------DDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEE-------ESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEE-------eCC
Confidence 47899999999999999999999999876655 367788999998653 334444444332222222221 234
Q ss_pred hheeEEecCc-cc----hHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHh
Q 011491 398 LILIKIAVNT-AA----RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 398 L~LIKV~~~~-~~----r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL 450 (484)
+++|-|--.. .. -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aL 153 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVAL 153 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHH
Confidence 6666653221 12 23455555555555544443333333444444444444444
No 50
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=94.03 E-value=0.14 Score=50.56 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=55.7
Q ss_pred eEEEEEEEE---cCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491 78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 78 ~khtISilV---eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~---iTIVV~gde~~veQI~kQL~KLidVikV 148 (484)
.|-.|.+.+ .|+||.|.++.+.|+.||+|+..|---|+... + + +.+. +-++..+.+.+++|++.-.-+++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence 466788888 89999999999999999999999998887654 2 2 4444 55677889999999887655444
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=94.01 E-value=0.52 Score=42.80 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=76.9
Q ss_pred EEEE-EEcCchhHHHHHHHHHhccCceeeeEeeeecC--CC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491 81 TISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH 156 (484)
Q Consensus 81 tISi-lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~ 156 (484)
.|++ .+.|+||.+.+|...|++.|+||+.++.+... +. ..+++++..++ .++..+.|+++..=+... .-.
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~----~v~ 90 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWT----NVL 90 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCS----EEE
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCC----eEE
Confidence 4555 46999999999999999999999999876332 22 23777776433 344445555432211111 112
Q ss_pred hhhhheeEEEeCCCC-CH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 011491 157 VERELMLIKLNGDTS-TW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (484)
Q Consensus 157 V~RELaLiKV~~~~~-~r----~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~-fG 217 (484)
+.+++++|-|-.... .+ ..+++.....+-+| +.-++.++.+=+ +.+..+..++.|.. |+
T Consensus 91 ~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 91 YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 157 (178)
T ss_dssp EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence 456788888865432 22 25555555555566 444555544444 55666666666553 54
No 52
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=93.80 E-value=0.15 Score=46.95 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=73.5
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCchhhhhh
Q 011491 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE 160 (484)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~~~V~RE 160 (484)
-+.|+||.+.||.+.|++.|+||+.++...++ +.+. ++++++.++ ....++.+++.+-+..-+|. +.+.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence 47899999999999999999999999876554 2444 888887544 22333333332212222222 3456
Q ss_pred heeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 011491 161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG 217 (484)
Q Consensus 161 LaLiKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fG 217 (484)
+++|-|--.. .+ -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence 7777764332 12 2345555555566655554333444444455555555555543 54
No 53
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=93.67 E-value=0.15 Score=46.42 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=74.4
Q ss_pred EEEE-EEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEeccCC
Q 011491 316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH 390 (484)
Q Consensus 316 tLsi-lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KL---idVi~V~dlt~ 390 (484)
.|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+-..|++++..+ ..++..+.|+++ .....+
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v----- 89 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV----- 89 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence 4455 468999999999999999999999998764322 2356788888743 234444555543 222222
Q ss_pred chhHHHhhheeEEecCcc-ch----HHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 391 ~~~V~REL~LIKV~~~~~-~r----~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.+..++++|-|-.... .+ ..+++.....+-+| +.-++..+.+=+ +.+..+..++.|.
T Consensus 90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh 153 (178)
T 2dtj_A 90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALH 153 (178)
T ss_dssp --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHH
T ss_pred --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHH
Confidence 2235677887754321 12 35555555555555 444555544444 5555555555444
No 54
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.60 E-value=0.22 Score=44.22 Aligned_cols=110 Identities=8% Similarity=0.109 Sum_probs=67.1
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhHHHhhhee
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILI 401 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LI 401 (484)
.++||++.|+...|++.|+||+-++.++. +++++++.++ .++++++.|.+. ..|. +.+.+++|
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~v 91 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVII 91 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEE
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEE
Confidence 47899999999999999999999986542 7999998554 678888888773 2222 12346777
Q ss_pred EEecCc-----cchHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHh
Q 011491 402 KIAVNT-----AARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 402 KV~~~~-----~~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL 450 (484)
-|--.. ..-..+++... +-.|.-++ .....+.+.=+.+..+..++.|
T Consensus 92 svvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~L 145 (157)
T 3mah_A 92 CIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIAL 145 (157)
T ss_dssp EEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHH
T ss_pred EEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHH
Confidence 764322 11234444333 44433333 3333344444455555555544
No 55
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=93.59 E-value=0.2 Score=44.94 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCchhhhhhh
Q 011491 86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (484)
Q Consensus 86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~~~V~REL 161 (484)
+.|+||++.||.+.+++.|+||+-++.+.+. +.+ .+++++..++ +...++.+++.+-... .+. +.+.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987552 234 4888887543 2233333333222222 332 35667
Q ss_pred eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 162 aLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
+++-|-... .--..+++.....+-+|.-++...+.+-+.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHH
Confidence 777775543 122355665555556663333222233344345556666666654
No 56
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=93.16 E-value=0.2 Score=52.69 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=55.5
Q ss_pred cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEE-eCChhHHHHHHHHHhcC-cceeEEE
Q 011491 76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVV-SGTERVLRQVVEQLNKL-VNVIKVE 149 (484)
Q Consensus 76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV-~gde~~veQI~kQL~KL-idVikV~ 149 (484)
+..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +- +-|-+ +-++..+.++++.|.+. ..-+++-
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 3457788888899999999999999999999999988887543 32 22222 34455688999999888 5555543
No 57
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=92.48 E-value=0.54 Score=46.33 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=56.7
Q ss_pred EEEEEEEE---eCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 314 ~htLsilV---eN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
|-.|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+. -++..+.+.+++|++.-.-+++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence 45777888 8999999999999999999999999988765 35555555554 4567789999999887654443
No 58
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=91.90 E-value=0.59 Score=47.34 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=54.1
Q ss_pred EEEEEEEe--CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491 315 HTLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 315 htLsilVe--N~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V 385 (484)
-++.+.+. |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-+.| ++..+.+.++.|++.-.-+++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444443 799999999999999999999999888765 445566666766 456789999999887654444
No 59
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=91.79 E-value=0.22 Score=47.11 Aligned_cols=131 Identities=12% Similarity=0.125 Sum_probs=73.4
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCch
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP 392 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~ 392 (484)
-||. -+.|+||++.||-+.|++.|+||+-++.+.++ +.+...++++++.++ +....+.+++.+-+...++..
T Consensus 38 Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~----- 111 (200)
T 4go7_X 38 VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLY----- 111 (200)
T ss_dssp EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEE-----
T ss_pred EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEEE-----
Confidence 3443 58999999999999999999999999988766 346778888887443 334444444443333333332
Q ss_pred hHHHhhheeEEecCc-----cchHHHHHHHHHcCcE--EEEecCCEEEEEEeCCHHHHHHHHHHh-ccCCc
Q 011491 393 FAERELILIKIAVNT-----AARRDVLDIAKIFRAR--AVDVSDHTITLELTGDLNKIIALQRLL-EPYGI 455 (484)
Q Consensus 393 ~V~REL~LIKV~~~~-----~~r~eI~~la~ifrak--IVDvs~~si~iE~TG~~~Kidafi~lL-~pyGI 455 (484)
...++.|-|--.. .--..+++....-+-+ .+.-++-.+.+=+ +.+..+..++.| +.|++
T Consensus 112 --~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 112 --DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL 178 (200)
T ss_dssp --ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred --ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence 2234444332211 1123455544443334 4544444444433 444444444444 34653
No 60
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=91.25 E-value=0.68 Score=41.05 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=69.5
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEE
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 166 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV 166 (484)
.++||++.||-..|++.|+||+-++.++ ..++++++.++ .++++.+.|.+. + .|. +.+.+++|-|
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~-~--~v~-------~~~~~a~vsv 93 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI-G--DVT-------VDKDMVIICI 93 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT-E--EEE-------EEEEEEEEEE
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc-C--eEE-------EeCCeEEEEE
Confidence 4899999999999999999999998643 36888887544 678888888772 1 121 3456788886
Q ss_pred eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491 167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 167 ~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
--.. ..-..+++... +..|.-++ .....|.+.=+.+..+..++.|.
T Consensus 94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh 146 (157)
T 3mah_A 94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS 146 (157)
T ss_dssp EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence 5432 22234444444 44544443 33334444555555555555554
No 61
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=91.24 E-value=0.78 Score=46.47 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=51.5
Q ss_pred EEEEEEEc--CchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCcceeEE
Q 011491 80 HTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 80 htISilVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVikV 148 (484)
.++.+.+. |+||.|.++.+.|+.||+|+..|---|+... + + +=|-+.| ++..+.+.++.|++.-.-+|+
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444443 7999999999999999999999998887654 2 2 4555665 467788899999887554444
No 62
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=91.05 E-value=0.63 Score=48.93 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=56.7
Q ss_pred CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcc-cceEEE
Q 011491 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEV 385 (484)
Q Consensus 309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gde~~ieql~kQL~KL-idVi~V 385 (484)
.++-.+-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|-+. -++..+.++++.|++. ..-++|
T Consensus 29 ~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki 108 (429)
T 1phz_A 29 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE 108 (429)
T ss_dssp CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence 34455678888889999999999999999999999999888754 33333333333 2344588999999988 544444
No 63
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=91.03 E-value=0.86 Score=46.79 Aligned_cols=128 Identities=13% Similarity=0.194 Sum_probs=77.7
Q ss_pred EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEeccCCc
Q 011491 315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHL 391 (484)
Q Consensus 315 htLsil-VeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd-e~~ieql~kQL~KLidVi~V~dlt~~ 391 (484)
..|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...++++++.+ .+...++++++.+-+..-.|.
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~----- 339 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVL----- 339 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEE-----
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEE-----
Confidence 345666 7899999999999999999999999763332 13567899999853 334556666665444432222
Q ss_pred hhHHHhhheeEEecCcc-----chHHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 392 PFAERELILIKIAVNTA-----ARRDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 392 ~~V~REL~LIKV~~~~~-----~r~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+++.++++-|-...- --..+++.....+-+| +.-++..+.+=+- .+..+..++.|.
T Consensus 340 --~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~Lh 402 (421)
T 3ab4_A 340 --YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARALH 402 (421)
T ss_dssp --EECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHHH
T ss_pred --EeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHHH
Confidence 234577777754321 1245666555545555 5556555554443 333444444443
No 64
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=90.96 E-value=1.3 Score=45.49 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred EEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCc
Q 011491 80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE 154 (484)
Q Consensus 80 htISil-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~ 154 (484)
..|++. +.|+||.+.||...|++.|+||+-++...++ ..+ .++++++.++ ....++.+++.+-+..-.|
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------ 338 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------ 338 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence 356666 7899999999999999999999999763332 023 4888888543 3344555555443332122
Q ss_pred hhhhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 011491 155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG 217 (484)
Q Consensus 155 ~~V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG 217 (484)
.+++.++++-|-... .--..+++.....+-+| +.-++.++.+=+ +.+..+..++.|. .|.
T Consensus 339 -~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 339 -LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ 406 (421)
T ss_dssp -EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred -EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence 245678888775532 23346766666655666 555555554443 3444555555554 355
No 65
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=89.83 E-value=1.9 Score=36.00 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=62.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH 383 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi 383 (484)
+-+.+.|.|+|+--+-.+|=.++++.|-.|-. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|.
T Consensus 6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 45799999999999988999999999999986 555 66668999999999999999999999999998874
No 66
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=89.18 E-value=3.3 Score=35.73 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=62.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhcc---CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRR---GyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
..|.+.+...+.++..+.|..+|.+. +|.+ ++-++....+..+|+.+. .+.++++.|-+.|.+.-.|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 46999999999999999999999988 8887 558888999999999998 5788999999999998887754
No 67
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=88.16 E-value=1.5 Score=36.21 Aligned_cols=70 Identities=6% Similarity=0.140 Sum_probs=60.1
Q ss_pred eEEEEEEEEeCchh-HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491 313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV 385 (484)
Q Consensus 313 ~~htLsilVeN~pG-VL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V 385 (484)
..|++.+...+.++ ....|..+| +|++.++. .-++....+..+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999 999999999 77886643 46777889999999988 5788999999999998888754
No 68
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=87.41 E-value=0.72 Score=43.50 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=71.4
Q ss_pred EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhh
Q 011491 85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVEREL 161 (484)
Q Consensus 85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~REL 161 (484)
-+.|+||++.||-+.|++.|+||+-++.+.++.. + .++.++..+ ..++..+.|+++..=+....+ .+...+
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--d~~~~~~~l~~~~~~~~~~~v----~~~~~i 115 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--VGPAAVEKLDSLRNEIGFSQL----LYDDHI 115 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--GHHHHHHHHHTTHHHHCCSEE----EEECCE
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--hHHHHHHHHHHHHhhhceeeE----EEecCe
Confidence 4889999999999999999999999988766532 2 267777643 334444444444322211111 134456
Q ss_pred eeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 011491 162 MLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI 218 (484)
Q Consensus 162 aLiKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI 218 (484)
+.|-|--.. .. -..+++....-+-+|.-++..-+.|-+.=+.+..+..++.|- .|++
T Consensus 116 akVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 116 GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGL 178 (200)
T ss_dssp EEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred eeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHhCC
Confidence 655553322 12 224555554444555444333333444445566665666555 4763
No 69
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=86.84 E-value=3.5 Score=34.46 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=57.1
Q ss_pred ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee-ecCCC--cEEEEEEeCChhHHHHHHHHHhcCccee
Q 011491 77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI 146 (484)
Q Consensus 77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg-~Ted~--~~iTIVV~gde~~veQI~kQL~KLidVi 146 (484)
.+-+.+.|.|+|+--+-.+|=.++++-|-.|-.= +| |..+. ++|+++++|+.+.+..+..+|.+|--|-
T Consensus 5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gR-mGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLR-VGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEE-EEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEE-cCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 3558999999999988889999999999999743 33 43333 4599999999999999999999987663
No 70
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=85.54 E-value=8.3 Score=32.18 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=58.3
Q ss_pred EEEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCC-e-EEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491 314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG-L-SCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 314 ~htLsilV--eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~-i-SRiTIVV~-gde~~ieql~kQL~KLidVi~V~ 386 (484)
.|++.+.. ++..-|...+...+.+-+|.+.+|...+.+ ++ + -+-+++.. -+++.+++|+.+|...-.|..|.
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 48888887 677888999999999999999999977766 55 4 34444444 46778999999999999999886
No 71
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=83.58 E-value=1.6 Score=36.69 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=44.9
Q ss_pred eeEEEeCCC--CCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 011491 162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI 218 (484)
Q Consensus 162 aLiKV~~~~--~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI 218 (484)
.++|+.... ...+-|-++++.|+..+ ||- .-.++++|++|+++++++.++.|+..|+
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 90 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV 90 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 477776543 45668899999998654 233 4567999999999999999999999995
No 72
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=83.39 E-value=3.2 Score=34.30 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=46.9
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 011491 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (484)
Q Consensus 163 LiKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lE~a 222 (484)
++|+.... ...+-|-++++.|+..+ =.+ .-.++++|+.|++++++++++.|+..|+ .|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 78887664 45567999999986543 332 3378999999999999999999999996 5665
No 73
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=83.19 E-value=2.2 Score=35.51 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=46.8
Q ss_pred eeEEecCccc--hHHHHHHHHHcC-------cEEEEec---CCEEEEEEeC-CHHHHHHHHHHhccCCc-EEEee
Q 011491 400 LIKIAVNTAA--RRDVLDIAKIFR-------ARAVDVS---DHTITLELTG-DLNKIIALQRLLEPYGI-CEVAR 460 (484)
Q Consensus 400 LIKV~~~~~~--r~eI~~la~ifr-------akIVDvs---~~si~iE~TG-~~~Kidafi~lL~pyGI-lEvaR 460 (484)
++|+...... .+-|-++++.|+ |+|-.+. -.++++|+.| +.++++++++.|+..|+ +|+..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 7888765433 456888888774 4555543 3679999999 89999999999999996 67764
No 74
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=82.82 E-value=2.7 Score=34.76 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=46.5
Q ss_pred eeEEecCcc--chHHHHHHHHHcCc-------EEEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491 400 LIKIAVNTA--ARRDVLDIAKIFRA-------RAVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEVA 459 (484)
Q Consensus 400 LIKV~~~~~--~r~eI~~la~ifra-------kIVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEva 459 (484)
++|+..... ..+-|-++++.|+. +|-.+ .-.++++|+.|+.++++++++.|+..|+ .|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 788876543 34568889888754 44453 3378999999999999999999999996 6766
No 75
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=82.30 E-value=5.1 Score=41.88 Aligned_cols=117 Identities=14% Similarity=0.242 Sum_probs=76.9
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--HHHHHHHHHhcCcceeEEEecCCchhhhhhheeE
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI 164 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--~veQI~kQL~KLidVikV~dlt~~~~V~RELaLi 164 (484)
.++||++.||...|++.|+||+.++.++ .-++++++.++. ..+++.+.|.+.+..-+|. +.+.+++|
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V 377 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV 377 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence 5799999999999999999999887542 358888875542 4677888887765433333 45678888
Q ss_pred EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491 165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
-|--. +.--..+++.....+-+|.-++ ...+.|-+.=+.+..+..++.|.
T Consensus 378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH 434 (446)
T 3tvi_A 378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY 434 (446)
T ss_dssp EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence 77432 3344567777777677775554 33344444444555555555553
No 76
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=82.16 E-value=9.8 Score=41.09 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=79.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhccc-------ceEEEec
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLI-------DLHEVQD 387 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~ieql~kQL~KLi-------dVi~V~d 387 (484)
+|. .+.+.||++.||.+.|++.|+||+-++.+.++ .+...++++++.++ +...++.+++.+-+ ...+|.
T Consensus 274 ~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~-~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~- 350 (600)
T 3l76_A 274 ALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHD-GNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII- 350 (600)
T ss_dssp EEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCB-TTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE-
T ss_pred EEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccC-CCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE-
Confidence 444 56789999999999999999999999887765 46778999998543 23444444444322 222222
Q ss_pred cCCchhHHHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 388 ITHLPFAERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 388 lt~~~~V~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
+.+.+++|-|--.. ..-..+++.....+.+|.-++..-+.|.+.=+.+..+..++.|.
T Consensus 351 ------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh 413 (600)
T 3l76_A 351 ------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALS 413 (600)
T ss_dssp ------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHH
T ss_pred ------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 23457777765332 22356777777777776655444444444444555555555554
No 77
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=81.38 E-value=3 Score=34.40 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=46.0
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 011491 163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA 222 (484)
Q Consensus 163 LiKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lE~a 222 (484)
++|+.... ...+-|-++++.|+..+ =.+ .-..|++|+.|+++.++++++.|+..|+ .|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 77777654 45567889999886543 332 3378999999999999999999999996 5654
No 78
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=80.90 E-value=3.6 Score=34.52 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=45.5
Q ss_pred heeEEecCcc--chHHHHHHHHHcCc-------EEEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491 399 ILIKIAVNTA--ARRDVLDIAKIFRA-------RAVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEVA 459 (484)
Q Consensus 399 ~LIKV~~~~~--~r~eI~~la~ifra-------kIVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEva 459 (484)
.++|+....+ ..+-|-++++.|+. +|=.+ .-.++++|++|+.+++++.++.|+..|+ .|+.
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4777766443 34678889888874 33332 4567999999999999999999999996 4543
No 79
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=79.77 E-value=2.8 Score=34.84 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=46.8
Q ss_pred eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 011491 163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR 223 (484)
Q Consensus 163 LiKV~~~~--~~r~eI~~l~~~FrA-------kIVDv---s~~sl~iE~TG-~~~KIdafi~~L~~fGI-lE~aR 223 (484)
++|+.... ...+-|-++++.|+. +|=.+ .-..|++|+.| +++.++++++.|+..|+ .|...
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 78887654 455668899998854 44443 33789999999 89999999999999996 57663
No 80
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=79.29 E-value=10 Score=39.58 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=71.5
Q ss_pred EEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCc------------c
Q 011491 80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV------------N 144 (484)
Q Consensus 80 htISil---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLi------------d 144 (484)
-.|++. ..|+||++.||...|++.|+||+-++.+.++ ..++++|+.++ .++.++.|++-. .
T Consensus 319 a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d--~~~a~~~L~~~l~~~~~~~~~~~~~ 394 (473)
T 3c1m_A 319 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED--VDKALKALKREFGDFGKKSFLNNNL 394 (473)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG--HHHHHHHHHHHHCC----CTTSCCC
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH--HHHHHHHHHHHHhhhcccccccccc
Confidence 345555 4789999999999999999999999975443 24888887543 334444444211 0
Q ss_pred eeEEEecCCchhhhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491 145 VIKVEDISNEPHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 145 VikV~dlt~~~~V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.-.| .+++.+++|-|-... .--..+++.....+-+|.-++ ...+.+-+.=+.+..+..++.|.
T Consensus 395 ~~~v-------~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh 464 (473)
T 3c1m_A 395 IRDV-------SVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 464 (473)
T ss_dssp EEEE-------EEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHH
T ss_pred cceE-------EEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHH
Confidence 1111 134567777776543 122355555555555663332 33333333334444555555544
No 81
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=76.42 E-value=3.8 Score=34.39 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 26 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 56999999999988 7888888889999999999999999999986
No 82
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=76.22 E-value=2.5 Score=44.18 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=39.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK 378 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K 378 (484)
.|+||++.||...+++.|+||+-++.+.++ ..|+++++.++ .++.++.|++
T Consensus 329 ~~~~G~~a~if~~La~~~InV~~IsQ~tse----~~Is~~V~~~d--~~~a~~~L~~ 379 (473)
T 3c1m_A 329 VGVSGTAARIFKALGEEEVNVILISQGSSE----TNISLVVSEED--VDKALKALKR 379 (473)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEEECCTT----CCEEEEEEGGG--HHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEEecCCC----CEEEEEEechH--HHHHHHHHHH
Confidence 688999999999999999999999976554 25889998543 4455555553
No 83
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=75.43 E-value=4.4 Score=33.96 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|..++ +.|-...++++.+++-|+++++++|++.|+.
T Consensus 28 R~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 28 RESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 889999999887 7888888899999999999999999999986
No 84
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=75.23 E-value=8.4 Score=40.26 Aligned_cols=116 Identities=8% Similarity=0.144 Sum_probs=71.8
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhcccceEEEeccCCchhHHHhhh
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKLIDLHEVQDITHLPFAERELI 399 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~--~ieql~kQL~KLidVi~V~dlt~~~~V~REL~ 399 (484)
.+.||++.||...|++.|+||+.++.++ ..++++++.++. ..+++.+.|.+.+..-+|. +.+.++
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~------~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA 375 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV------DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMA 375 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET------TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC------CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeE
Confidence 4789999999999999999999987542 368899885442 4677888888765533333 233567
Q ss_pred eeEEecCc-----cchHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHh
Q 011491 400 LIKIAVNT-----AARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 400 LIKV~~~~-----~~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL 450 (484)
+|-|--.. ..-..+++.....+-+|.-++ ...+.|-+.=+.+..+..++.|
T Consensus 376 ~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aL 433 (446)
T 3tvi_A 376 LVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSI 433 (446)
T ss_dssp EEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHH
T ss_pred EEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHH
Confidence 77664222 223456666666666765544 3333333333344444444444
No 85
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=71.07 E-value=6.7 Score=32.16 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|++++|++|++.|+.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 16 GFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 45888999999876 5688888889999999999999999999974
No 86
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=70.91 E-value=7.5 Score=31.72 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 16 GYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 45888999999876 568888888999999999999999999997
No 87
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=70.74 E-value=14 Score=39.16 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=67.9
Q ss_pred eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--------HHHHHHHHHHhcccceEEEeccCCchh
Q 011491 322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--------ESIGKLVQLLHKLIDLHEVQDITHLPF 393 (484)
Q Consensus 322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--------~~ieql~kQL~KLidVi~V~dlt~~~~ 393 (484)
.++||++.||...|++.|+||+-++-+ ...|+++++.++ +.++++.++|.+.-.| .+
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss------e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v-~~-------- 416 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVV-NL-------- 416 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE------TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEE-EE--------
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC------CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeE-EE--------
Confidence 358999999999999999999999643 346899998543 4677888888763222 11
Q ss_pred HHHhhheeEEecCccchH----HHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 394 AERELILIKIAVNTAARR----DVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 394 V~REL~LIKV~~~~~~r~----eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
.+.+++|-|--.-.... .+++.....+-+| +.-+...+-|.+.=+.+..+..++.|.
T Consensus 417 -~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH 479 (510)
T 2cdq_A 417 -LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 479 (510)
T ss_dssp -EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHH
T ss_pred -eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 24577777765511122 2333333333344 543334444444444555555555443
No 88
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=70.20 E-value=7.5 Score=34.28 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhccC--ceeeeeeeeecC-CCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491 325 PGVLNIVTGVISRRG--YNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKL 379 (484)
Q Consensus 325 pGVL~RVtglFsRRG--yNIeSLtVg~te-~~~iSRiTIVV~gde~~ieql~kQL~KL 379 (484)
.|+|+|+..+.-..| |.|..+.+|++. ++...||.+..+ |++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~-d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGR-DERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecC-CHHHHHHHHHHHHHc
Confidence 489999998887665 899999999764 455555554433 788999999999877
No 89
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=70.11 E-value=8.1 Score=31.51 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+
T Consensus 18 R~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 18 RAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 788999999765 668888888999999999999999999997
No 90
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=69.58 E-value=7.7 Score=31.78 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=38.3
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+.
T Consensus 18 R~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 18 RYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 788999999875 6688888889999999999999999999974
No 91
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=69.28 E-value=7.5 Score=31.69 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=40.6
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL 376 (484)
+...|.|..|||||+ .|.+-..+.||+++++.+|. ++++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEE-------EEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567888999999996 45566799999999988764 5788787652 3455555554
No 92
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=68.56 E-value=9.3 Score=31.42 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=45.4
Q ss_pred eeEEecCc--cchHHHHHHHHHcC-------cEEEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491 400 LIKIAVNT--AARRDVLDIAKIFR-------ARAVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEVA 459 (484)
Q Consensus 400 LIKV~~~~--~~r~eI~~la~ifr-------akIVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEva 459 (484)
++|+.... ...+-|-++++.|+ |+|-.+ .-.++++|+.|+.++++++++.|+..|+ +|+.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 67776543 33456888888775 444453 3378999999999999999999999996 6765
No 93
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=68.41 E-value=7 Score=31.85 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=39.2
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHH
Q 011491 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (484)
Q Consensus 80 htISilVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL 139 (484)
+...|.|..|||+|. .|.+-..+.||+++++.+|. .+++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-----~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-----VITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-----EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEE-----EEEEEecCCCHHHHHHHHHHHHHHh
Confidence 456778888899985 45566799999999888753 5788777652 3455555554
No 94
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=67.99 E-value=30 Score=29.71 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=52.8
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhcc---CceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEE
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARR---GYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRR---GyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV 148 (484)
..|.+.+...+.++....|..+|.+. +|.+ ++-++..... +|+.+. .+.+.++.|-+.|.+.-.|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 46899999999999999999999988 8988 3445544444 566655 3577899999999887776643
No 95
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=67.51 E-value=31 Score=28.66 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=57.0
Q ss_pred cceEEEEEEEEc--CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E-E--EEEEe-CChhHHHHHHHHHhcCcceeEE
Q 011491 76 KVKRHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L-F--TIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 76 ~~~khtISilVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~-i--TIVV~-gde~~veQI~kQL~KLidVikV 148 (484)
....|++.+.+. ++.-+...+...+.+.+|-+.+|...+.+ ++ . | ++... -+++.+++|+.+|...-.|..|
T Consensus 5 ~e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a 83 (94)
T 2lqj_A 5 GLQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAV 83 (94)
T ss_dssp SEEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEE
T ss_pred cceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEE
Confidence 445688888775 56677888889999999999999976655 54 3 4 44444 4678999999999999999988
Q ss_pred E
Q 011491 149 E 149 (484)
Q Consensus 149 ~ 149 (484)
.
T Consensus 84 ~ 84 (94)
T 2lqj_A 84 H 84 (94)
T ss_dssp E
T ss_pred E
Confidence 6
No 96
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=67.22 E-value=60 Score=28.92 Aligned_cols=77 Identities=10% Similarity=0.035 Sum_probs=62.0
Q ss_pred CceEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491 311 GLRSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388 (484)
Q Consensus 311 ~~~~htLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl 388 (484)
+-.--+|++..+++ .++-.+++.+.....=.|-|-.=-+- +.+..=.+|++.|+.+.+..+..+|..+=.|..+.-.
T Consensus 62 ~~~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhl-d~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl~ 139 (148)
T 2wvf_A 62 ESKIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHM-DEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLT 139 (148)
T ss_dssp CCEEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEEC-SSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CceEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEEE
Confidence 44457899999888 78888999999988877776333343 3366778999999999999999999999999988753
No 97
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=66.90 E-value=10 Score=30.76 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=33.0
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 011491 80 HTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT 128 (484)
Q Consensus 80 htISilVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd 128 (484)
+...|.|..|||||. .|.+-..+.||+++++.+|. .+++...++
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-----~~~l~~~~~ 51 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGK-----VLEIVFPAE 51 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEE-----EEEEEEECS
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEE-----EEEEEecCC
Confidence 456778888899985 45667899999988887653 477777654
No 98
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=66.81 E-value=7.7 Score=31.90 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45888999999876 668888888999999999999999999997
No 99
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=66.66 E-value=11 Score=33.59 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491 89 ESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152 (484)
Q Consensus 89 ~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gde~~veQI~kQL~KLidVikV~dlt 152 (484)
-|++|..|..+=...|..++++..++....+ + ++|.+.|+=..+-+-...|++|-.++.+.+++
T Consensus 44 m~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~ 112 (147)
T 2rjz_A 44 VPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFE 112 (147)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeE
Confidence 4899999999999999999999988654333 2 89999999999999999999999999998885
No 100
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=66.25 E-value=8.5 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+
T Consensus 20 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 20 RWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 788999999765 668888888999999999999999999997
No 101
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=66.02 E-value=12 Score=30.33 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=38.9
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hH----HHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DE----SIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~----~ieql~kQL 376 (484)
+...|.|..|||||+ .|.+-..+.||+++++.+|. ++++...++ ++ .++++. +|
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~-~L 66 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGK-------VLEIVFPAENLLEAEEKAKAMG-AL 66 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEE-------EEEEEEECSSHHHHHHHHHHHH-HH
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEE-------EEEEEecCCCHHHHHHHHHHHH-HH
Confidence 567888889999996 45567899999988887754 577777754 33 355565 44
No 102
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=66.00 E-value=28 Score=36.96 Aligned_cols=114 Identities=17% Similarity=0.275 Sum_probs=70.1
Q ss_pred cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--------hHHHHHHHHHhcCcceeEEEecCCchhhh
Q 011491 87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--------RVLRQVVEQLNKLVNVIKVEDISNEPHVE 158 (484)
Q Consensus 87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--------~~veQI~kQL~KLidVikV~dlt~~~~V~ 158 (484)
.++||++.||-..|++.|+||+-++-+ ..-++++++.++ +.++++.++|++.-+ |. ++
T Consensus 352 ~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~---v~-------~~ 417 (510)
T 2cdq_A 352 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAV---VN-------LL 417 (510)
T ss_dssp TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE---EE-------EE
T ss_pred CCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCe---EE-------Ee
Confidence 468999999999999999999999643 334888887543 467777778876322 21 35
Q ss_pred hhheeEEEeCCCCCHH----HHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491 159 RELMLIKLNGDTSTWP----EIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 159 RELaLiKV~~~~~~r~----eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
+.+++|-|--.-.... .+++.....+-+|.-++ ...+-|-+.=+.+..+..++.|.
T Consensus 418 ~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH 479 (510)
T 2cdq_A 418 KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 479 (510)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHH
T ss_pred CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 6788888865511221 23333333334553333 44444444445555666666554
No 103
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=65.83 E-value=9.2 Score=32.07 Aligned_cols=45 Identities=2% Similarity=-0.044 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|++++|++|++.|+.
T Consensus 25 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 71 (102)
T 1urr_A 25 FFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN 71 (102)
T ss_dssp SHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 46899999999876 6688888889999999999999999999973
No 104
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=65.62 E-value=9.3 Score=32.03 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|.-+.++|+.++ +.|-..+++++.+++-|+++++++|++.|+
T Consensus 27 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 27 RKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 889999999765 668888889999999999999999999997
No 105
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=65.41 E-value=8.9 Score=32.27 Aligned_cols=45 Identities=2% Similarity=0.015 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|++++|++|++.|+.
T Consensus 28 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 28 GFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 56999999999876 5688888889999999999999999999973
No 106
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=65.07 E-value=43 Score=27.06 Aligned_cols=72 Identities=6% Similarity=-0.063 Sum_probs=56.8
Q ss_pred EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEe
Q 011491 314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ 386 (484)
Q Consensus 314 ~htLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~ 386 (484)
--+|++..+++ .++-.|++.+.....=.|-|-.=-+- +.+..=.++++.|+.+.++.+..+|..+-.|..+.
T Consensus 5 ~Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhl-d~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 5 FAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeee-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 35788888888 78888999999988777776333343 33366688889999999999999999997777665
No 107
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=64.57 E-value=10 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|+.++ |.|-...++++.+++.|+++++++|++.|+.
T Consensus 30 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 30 RKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 889999999875 6688888889999999999999999999973
No 108
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=64.37 E-value=8.7 Score=31.58 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNL 213 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L 213 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|
T Consensus 18 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 18 GFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp TCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 46788888998764 78889999999999999999999999999
No 109
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=62.59 E-value=10 Score=31.63 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~ 214 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+
T Consensus 22 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 22 FFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46899999999876 568888888999999999999999999996
No 110
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=62.43 E-value=10 Score=31.21 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=37.0
Q ss_pred hHHHHHHHHHc--CcEEEEecCCEEEEEEeCCHHHHHHHHHHh
Q 011491 410 RRDVLDIAKIF--RARAVDVSDHTITLELTGDLNKIIALQRLL 450 (484)
Q Consensus 410 r~eI~~la~if--rakIVDvs~~si~iE~TG~~~Kidafi~lL 450 (484)
|.-+.++|+.+ .+.|-..+++++.+++.|+++++++|++.|
T Consensus 20 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 20 RYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp CSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 77888899875 477889999999999999999999999999
No 111
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=61.81 E-value=10 Score=31.52 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
|.-+.++|+.++ +.|-..+++++.+++-|+++++++|++.|+
T Consensus 24 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 24 RKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 889999999875 668888888999999999999999999996
No 112
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=61.33 E-value=9.3 Score=31.75 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491 410 RRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 410 r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~p 452 (484)
|.-+.++|+.++ +.|-...++++.+++-|+++++++|++.|+.
T Consensus 23 R~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 23 RMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp TTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 788999999765 6688888899999999999999999999974
No 113
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=60.00 E-value=9 Score=31.85 Aligned_cols=45 Identities=20% Similarity=0.024 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-..++.++.+++-|+++++++|++.|+.
T Consensus 21 GFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 21 CFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp CCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred CHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 46889999999876 5688888889999999999999999999974
No 114
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=59.32 E-value=85 Score=27.21 Aligned_cols=77 Identities=5% Similarity=-0.091 Sum_probs=61.5
Q ss_pred CCceEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 310 SGLRSHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 310 ~~~~~htLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
.+-+--+|++..+++ .++-.+++.+.....=.|-|-.=-+- +.+..=.++++.|+.+.+..+..+|..+-.|..+.-
T Consensus 49 ~~~~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 49 GTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp TCEEEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCceEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 344567999999888 78888999999988877776433343 336677899999999999999999999988887764
No 115
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=59.03 E-value=19 Score=31.75 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhccC--ceeeeEeeeecC-CCcEEEEEEe-CChhHHHHHHHHHhcC
Q 011491 90 SGIINRIAGVFARRG--YNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKL 142 (484)
Q Consensus 90 pGVL~RIagLFsRRG--yNIeSLtVg~Te-d~~~iTIVV~-gde~~veQI~kQL~KL 142 (484)
.|+|+|+-.+.-..| |.|..+.||++. +++.-.|.|. .|++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 589999999887766 889999999765 4466666665 4678899999999887
No 116
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=58.78 E-value=19 Score=29.24 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=41.0
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gd----e~~ieql~kQL 376 (484)
+...|.|..|||||+ .|.+...+.|| +++++.+|. ++++.++++ ++.++.+.++|
T Consensus 2 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-------~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 2 YKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-------YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-------EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCchHHHHHHHHHHHHHh
Confidence 346788888999995 56678899999 699988864 577777765 24566666665
No 117
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=58.70 E-value=54 Score=26.45 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=54.2
Q ss_pred EEEEEEEcCc-hhHHHHHHHHHhccCceeeeEe-eeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491 80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLA-VGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149 (484)
Q Consensus 80 htISilVeN~-pGVL~RIagLFsRRGyNIeSLt-Vg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~ 149 (484)
-+|++..+++ .++-.|++.+.....=.|-|=. +--.++..+.++++.|+.+.++.+..+|..+--|..+.
T Consensus 6 Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 6 AVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 4788888888 6788899999988766665544 43344544689999999999999999999996666554
No 118
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=58.31 E-value=23 Score=28.92 Aligned_cols=68 Identities=10% Similarity=0.282 Sum_probs=49.1
Q ss_pred eEEEEEEEEcCchh-HHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEE
Q 011491 78 KRHTISVFVGDESG-IINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV 148 (484)
Q Consensus 78 ~khtISilVeN~pG-VL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV 148 (484)
..|.+.+...+.++ ....|..+| +|++.++. .-++..... +|+.+. .+.++++.+-+.|.+.-.|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 47999999999999 999999999 77886543 112222222 566555 3577899999999887776543
No 119
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=57.17 E-value=22 Score=37.83 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=61.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEeccCC
Q 011491 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-e~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
+++.+++.+-++||-|.+++.++. +-||..+.--. .+.+-..+.+.+.- + .+.+++|++.|++-= ..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRF-ADAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEEC-CCSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeec-cCCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECCC
Confidence 468899999999999999999998 68998877653 35566677777763 3 688999999998752 46889998
Q ss_pred chhH
Q 011491 391 LPFA 394 (484)
Q Consensus 391 ~~~V 394 (484)
.+..
T Consensus 412 ~~~~ 415 (514)
T 1tdj_A 412 DEMA 415 (514)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7755
No 120
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=55.37 E-value=27 Score=30.99 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEE--EEEEEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH 390 (484)
Q Consensus 323 N~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSR--iTIVV~gde~~ieql~kQL~KLidVi~V~dlt~ 390 (484)
.-|++|..|..+=...|..++++..++.. .+.+.+ ++|.+.|+-..+-+-+..|++|.-++.+.+++=
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 34899999999999999999999988643 445555 566678999999999999999999999988853
No 121
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=55.18 E-value=20 Score=29.05 Aligned_cols=54 Identities=11% Similarity=0.439 Sum_probs=39.3
Q ss_pred EEEEEEcCchhHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCC----hhHHHHHHHHH
Q 011491 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGT----ERVLRQVVEQL 139 (484)
Q Consensus 81 tISilVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gd----e~~veQI~kQL 139 (484)
...|.|..|||+|. .|.+...+.|| +++++.+|. .+++.++++ ++.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-----~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-----YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-----EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCchHHHHHHHHHHHHHh
Confidence 35677778899985 56678899999 699888753 477777765 24566666665
No 122
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=54.87 E-value=59 Score=28.24 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=57.1
Q ss_pred eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 78 ~khtISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.++++.|+.+.+..+..+|..+--|..+.-
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 345888888888 7888899999988776665544334 454456899999999999999999999888877653
No 123
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=54.63 E-value=64 Score=28.74 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=57.9
Q ss_pred eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 78 ~khtISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
.--+|++..+++ .++-.+++.+.....=.|-|-.=-+ .++..+.+|++.|+.+.+..+..+|..+=-|..+.-
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 346888888888 7888899999988776665544334 444456899999999999999999999988887764
No 124
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=54.06 E-value=48 Score=28.85 Aligned_cols=128 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeee--------eeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSL--------AVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 316 tLsilVeN~pGVL~RVtglFsRRGyNIeSL--------tVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
++.+++.+. .+..+.-+.|-||..| .+.+...++-..=.+++.|+.+.+.+....+..++.-. ..
T Consensus 4 ~~~~~ip~~-----~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~--~~ 76 (163)
T 3krm_A 4 MVQVFIPAQ-----AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE--NF 76 (163)
T ss_dssp EEEEEEEGG-----GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT--TS
T ss_pred EEEEEechh-----hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc--cc
Confidence 566666543 4556666666666533 44443333333334666778887777666654443211 01
Q ss_pred cCCchhHHHhhheeEEecCc------cchHHHHHHHHHcCcEEEEecCCE-------EEEEEeCCHHHHHHHHHHhcc
Q 011491 388 ITHLPFAERELILIKIAVNT------AARRDVLDIAKIFRARAVDVSDHT-------ITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 388 lt~~~~V~REL~LIKV~~~~------~~r~eI~~la~ifrakIVDvs~~s-------i~iE~TG~~~Kidafi~lL~p 452 (484)
..+.... ...+-+.|.... ..-..|.+|-+.++|+| ++.++. -++.++|+++.+++..+++..
T Consensus 77 ~~~~~~~-~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 77 FGPKEEV-KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SCSSCCC-CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred cccccCC-ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 1111100 001123333321 11246888999999997 787664 389999999999988777643
No 125
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=51.97 E-value=14 Score=32.33 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491 171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 171 ~~r~eI~~l~~~Fr--AkIVDvs~~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-|.-+.++|+.++ +.|-...+.++.+++-|+++.|++|++.|+.
T Consensus 48 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 48 FFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 57999999999885 5688888889999999999999999999973
No 126
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=51.46 E-value=15 Score=32.20 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=38.6
Q ss_pred chHHHHHHHHHcC--cEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491 409 ARRDVLDIAKIFR--ARAVDVSDHTITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 409 ~r~eI~~la~ifr--akIVDvs~~si~iE~TG~~~Kidafi~lL~ 451 (484)
-|.-+.++|+.++ +.|-...+.++.+++-|+.+.|++|++.|+
T Consensus 49 FR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~ 93 (121)
T 2lxf_A 49 FRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH 93 (121)
T ss_dssp CHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 3888999999875 668888889999999999999999999996
No 127
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=51.12 E-value=27 Score=28.83 Aligned_cols=56 Identities=11% Similarity=0.272 Sum_probs=39.8
Q ss_pred EEEEEEEEcCchhHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHH
Q 011491 79 RHTISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (484)
Q Consensus 79 khtISilVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL 139 (484)
.+...|.|..|||||. .|.+.+.+.|| +++++.+|. .+++.+++++ +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-----~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-----YLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-----EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-----EEEEEecCCCHHHHHHHHHHHHhhc
Confidence 3667888888999985 56678899999 699888753 4777776542 3345555554
No 128
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=49.86 E-value=33 Score=28.36 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=41.2
Q ss_pred EEEEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 011491 314 SHTLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (484)
Q Consensus 314 ~htLsilVeN~pGVL~----RVtglFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL 376 (484)
.+...|.|..|||||+ .|.+...+.|| +++++.+|. ++++.+++++ +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-------YLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCCCHHHHHHHHHHHHhhc
Confidence 3678899999999996 56678899999 699988764 5777777542 3455555554
No 129
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=48.97 E-value=50 Score=27.71 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=41.4
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGYN-IQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGyN-IeSLtVg~te~~~iSRiTIVV~gd-----e~~ieql~kQL 376 (484)
+...|.|..+||||+ -|.+-..+.||+ ++++.+|. ++.+.++++ ++.++++.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-------~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-------SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-------EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 556788888999995 577889999996 99988864 577777764 34566666665
No 130
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=48.32 E-value=1.4e+02 Score=26.03 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=61.1
Q ss_pred CCceEEEEEEEEeCch-hHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491 310 SGLRSHTLSMLVNNTP-GVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD 387 (484)
Q Consensus 310 ~~~~~htLsilVeN~p-GVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d 387 (484)
.+-..-+|++..+++. ++-.+++.+.....=.|-|-.=-+- +.+..=.+|++.|+.+.+..+..+|..+-.|..+.-
T Consensus 51 ~~~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 51 NEEVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHM-DEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp SSEEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred cCceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 3455678999888886 8888999999888877776433343 236667899999999999999999999988887764
No 131
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=47.19 E-value=51 Score=27.69 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=39.7
Q ss_pred EEEEEEEcCchhHHH----HHHHHHhccCce-eeeEeeeecCCCcEEEEEEeCC-----hhHHHHHHHHH
Q 011491 80 HTISVFVGDESGIIN----RIAGVFARRGYN-IESLAVGLNVDKALFTIVVSGT-----ERVLRQVVEQL 139 (484)
Q Consensus 80 htISilVeN~pGVL~----RIagLFsRRGyN-IeSLtVg~Ted~~~iTIVV~gd-----e~~veQI~kQL 139 (484)
+...|.|..+||||. .|.+-+.+.||+ ++++.+|. ++.+.++++ ++.++.+.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-----~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-----SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-----EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-----EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 345677778999985 578899999996 88888753 477777764 34455666655
No 132
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=46.28 E-value=21 Score=28.82 Aligned_cols=55 Identities=18% Similarity=0.411 Sum_probs=37.4
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCc-eeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHH
Q 011491 315 HTLSMLVNNTPGVLN----IVTGVISRRGY-NIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLL 376 (484)
Q Consensus 315 htLsilVeN~pGVL~----RVtglFsRRGy-NIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL 376 (484)
+...|.|..+||||+ .|.+-..+.|| +++++.+| -++++.+++++ +.++.+.++|
T Consensus 2 ~~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-------k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 2 YKATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-------KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-------EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 346788888999996 55667779999 68876654 46788777652 3455555554
No 133
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=46.16 E-value=15 Score=31.63 Aligned_cols=45 Identities=9% Similarity=0.262 Sum_probs=27.1
Q ss_pred hcCcEEEEecC-CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 011491 182 IFRAKVVDISE-HALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (484)
Q Consensus 182 ~FrAkIVDvs~-~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~R 231 (484)
.+.+++.+.++ --++||+..+++|+++|++.|+++= ..|.+.+..
T Consensus 62 ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v-----~~Glvt~e~ 107 (114)
T 1o51_A 62 MHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID-----FDGLVFTAD 107 (114)
T ss_dssp ----------CCCEEEEEEEECHHHHHHHHHHHHTCC-----CCSEEEEEE
T ss_pred EEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 45677788775 4699999999999999999999752 136655543
No 134
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=44.29 E-value=1.2e+02 Score=26.50 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred eEEEEEEEEcCch-hHHHHHHHHHhccCceeeeE-eeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 78 KRHTISVFVGDES-GIINRIAGVFARRGYNIESL-AVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 78 ~khtISilVeN~p-GVL~RIagLFsRRGyNIeSL-tVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
..-+|++..+++. ++-.+++.+.....=.|-|- .+--.++..+.++++.|+.+.+..+..+|..+--|..+.-
T Consensus 54 ~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 54 VAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 4468888888876 88889999988877666554 4434444456899999999999999999999888877763
No 135
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=42.94 E-value=40 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhccC
Q 011491 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSKF 216 (484)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~f 216 (484)
..|.+|.+..+|+| ++.++ .-+|.++|+++.++...+++...
T Consensus 27 ~~Ik~I~~~TGa~I-~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 27 ENVKAINQQTGAFV-EISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEK 76 (107)
T ss_dssp CHHHHHHHHSSSEE-EECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 47899999999995 67665 37899999999999998888764
No 136
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=41.06 E-value=21 Score=30.80 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=22.6
Q ss_pred HcCcEEEEecC-CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 419 IFRARAVDVSD-HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 419 ifrakIVDvs~-~si~iE~TG~~~Kidafi~lL~py 453 (484)
.+.+++.+.+. --++||+..+++|+++|++.|+++
T Consensus 62 ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 62 MHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp ----------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred EEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 34556667664 469999999999999999999975
No 137
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=40.84 E-value=23 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.420 Sum_probs=35.7
Q ss_pred EEEEEEcCchhHHH----HHHHHHhccCc-eeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHH
Q 011491 81 TISVFVGDESGIIN----RIAGVFARRGY-NIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQL 139 (484)
Q Consensus 81 tISilVeN~pGVL~----RIagLFsRRGy-NIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL 139 (484)
...|.|..|||+|. .|.+-..+.|| +++++.+| ..+++.+++++ +.++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-----k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-----KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-----EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-----EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45677778899985 55677779999 67766653 35888777652 3455555554
No 138
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.71 E-value=44 Score=27.87 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCcEEEEecCC--------EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH--------TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~--------si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+ |++.++ .-+|.++|+++.+++..++++.
T Consensus 27 ~~Ik~I~~~TGa~-I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~ 75 (107)
T 2hh2_A 27 ENVKAINQQTGAF-VEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEE 75 (107)
T ss_dssp CHHHHHHHHSSSE-EEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCE-EEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHH
Confidence 4688999999999 577765 3789999999999988887764
No 139
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=39.54 E-value=28 Score=36.18 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=54.2
Q ss_pred EEEEEEEEe-----CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-------HHHHHHHHHHhcccc
Q 011491 314 SHTLSMLVN-----NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-------ESIGKLVQLLHKLID 381 (484)
Q Consensus 314 ~htLsilVe-----N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-------~~ieql~kQL~KLid 381 (484)
+....|.++ +.||.+.||...|++.|+||+-++-+ + ..|+++++.++ +.++++.++|+++-.
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~----~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~ 379 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR 379 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C----CeEEEEEeccccchhhHHHHHHHHHHHhccCCe
Confidence 455555554 56899999999999999999999843 2 46899998543 257888888886322
Q ss_pred eEEEeccCCchhHHHhhheeEEecC
Q 011491 382 LHEVQDITHLPFAERELILIKIAVN 406 (484)
Q Consensus 382 Vi~V~dlt~~~~V~REL~LIKV~~~ 406 (484)
+.+ ++.+++|-|--.
T Consensus 380 -v~~---------~~~~a~vsvVG~ 394 (449)
T 2j0w_A 380 -VEV---------EEGLALVALIGN 394 (449)
T ss_dssp -EEE---------EEEEEEEEEEES
T ss_pred -EEE---------eCCeEEEEEECC
Confidence 112 245777777544
No 140
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=38.27 E-value=52 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCcEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISE-----HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~-----~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 24 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 24 GAKINEIRQMSGAQI-KIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp GHHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHCCEE-EEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 346888999999995 6765 46789999999999988877654
No 141
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=36.96 E-value=23 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=27.3
Q ss_pred HhcCcEEEEecCC-EEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 011491 181 DIFRAKVVDISEH-ALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231 (484)
Q Consensus 181 ~~FrAkIVDvs~~-sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~R 231 (484)
.++.+++.+.+.+ -++||+..+++||++|+..|+++= ..|.+.+..
T Consensus 57 ~ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv-----~~GlVt~e~ 103 (127)
T 2dcl_A 57 RVHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMI-----KDGMITVEP 103 (127)
T ss_dssp -----------CCCEEEEEEEEEHHHHHHHHHHHTTTC-----SSSEEEEEE
T ss_pred CEecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 3566788888854 699999999999999999999861 145555544
No 142
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=36.63 E-value=54 Score=34.91 Aligned_cols=116 Identities=16% Similarity=0.307 Sum_probs=80.6
Q ss_pred eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChhHHHHHHHHHhcCcceeEEEecCC
Q 011491 78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISN 153 (484)
Q Consensus 78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~--gde~~veQI~kQL~KLidVikV~dlt~ 153 (484)
+++.+++.+-++||.|.+++.++. +-||..+.--.+ +.+ .+.+.+. +..+.+++|++.|++- =..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~--g~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDG--GYSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSS--SCEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhC--CCCeEECCC
Confidence 468999999999999999999998 689988876532 222 3555554 4367899999999874 346788888
Q ss_pred chhh---hhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 011491 154 EPHV---ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI 218 (484)
Q Consensus 154 ~~~V---~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGI 218 (484)
.+.. .|=| | ..|+. .+ -.+--+.+|.--.|+-+-.|++.|.+ ++|
T Consensus 412 ~~~~~~h~~~~--~------g~~~~----------~~--~~e~~~~~~fpe~~gal~~fl~~~~~~~~i 460 (514)
T 1tdj_A 412 DEMAKLHVRYM--V------GGRPS----------HP--LQERLYSFEFPESPGALLRFLNTLGTYWNI 460 (514)
T ss_dssp CHHHHHTGGGT--C------CCCCS----------SC--CCCEEEEEECCCCTTHHHHHHHHHCSCCCC
T ss_pred CHHHHHHHHHh--h------CCcCc----------cC--CCceEEEEeCCCCCCHHHHHHHhcCCCceE
Confidence 7644 2221 1 11110 00 12445789999999999999999985 554
No 143
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=35.57 E-value=1.7e+02 Score=25.03 Aligned_cols=92 Identities=9% Similarity=0.131 Sum_probs=53.0
Q ss_pred EEEeCChhHHHHHHHHHhcCcceeEEEecCCchhh-hh--hheeEEEeCCC------CCHHHHHHHHHhcCcEEEEecCC
Q 011491 123 IVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV-ER--ELMLIKLNGDT------STWPEIMWLVDIFRAKVVDISEH 193 (484)
Q Consensus 123 IVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V-~R--ELaLiKV~~~~------~~r~eI~~l~~~FrAkIVDvs~~ 193 (484)
+.+.|+.+.+++....+..++.-..-..+++.+.. .+ .-.-+.|.... ..-..|.+|-+.++|+| ++.++
T Consensus 51 v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I-~i~~~ 129 (164)
T 2jvz_A 51 LRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI-QFKQD 129 (164)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEE-EECCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeE-EEeCC
Confidence 34467777777777777665432211111110000 00 00112333221 23346889999999996 56553
Q ss_pred -----EEEEEEeCChhHHHHHHHHhcc
Q 011491 194 -----ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 194 -----sl~iE~TG~~~KIdafi~~L~~ 215 (484)
.-++.++|+++.++...+++..
T Consensus 130 ~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 130 DGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp CTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 5789999999999988887754
No 144
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=35.35 E-value=47 Score=34.49 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=55.6
Q ss_pred eEEEEEEEEc-----CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-------hHHHHHHHHHhcCcce
Q 011491 78 KRHTISVFVG-----DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-------RVLRQVVEQLNKLVNV 145 (484)
Q Consensus 78 ~khtISilVe-----N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-------~~veQI~kQL~KLidV 145 (484)
.+....|.++ +.||.+.||-..|++.|+||+-++-+ ..-++++++.++ ..++++.++|+++-+
T Consensus 305 ~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss----~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~- 379 (449)
T 2j0w_A 305 RRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCR- 379 (449)
T ss_dssp EEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC-
T ss_pred eCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC----CCeEEEEEeccccchhhHHHHHHHHHHHhccCCe-
Confidence 3455555554 56899999999999999999999843 234888887542 367888888876222
Q ss_pred eEEEecCCchhhhhhheeEEEeCCC
Q 011491 146 IKVEDISNEPHVERELMLIKLNGDT 170 (484)
Q Consensus 146 ikV~dlt~~~~V~RELaLiKV~~~~ 170 (484)
| .+++.+++|-|--..
T Consensus 380 --v-------~~~~~~a~vsvVG~g 395 (449)
T 2j0w_A 380 --V-------EVEEGLALVALIGND 395 (449)
T ss_dssp --E-------EEEEEEEEEEEEESS
T ss_pred --E-------EEeCCeEEEEEECCC
Confidence 1 134678888886543
No 145
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=34.40 E-value=85 Score=24.59 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhccC
Q 011491 174 PEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSKF 216 (484)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~f 216 (484)
..|.+|-+..+|+| ++.+. .-++.++|+++.++...+++..+
T Consensus 26 ~~Ik~I~~~sga~I-~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 26 ANINEIRQMSGAQI-KIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCEE-EEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 46889999999995 67652 66899999999999888887653
No 146
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=33.83 E-value=87 Score=24.08 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCcEEEEecC-----CEEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSD-----HTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~-----~si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+ |++.+ +.-++.++|+++.++...+++..
T Consensus 25 ~~Ik~I~~~tga~-I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 25 AKINEIRQMSGAQ-IKIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp HHHHHHHHHHCCE-EEECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCE-EEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999999 57765 46789999999999988877653
No 147
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=33.44 E-value=30 Score=30.42 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=22.8
Q ss_pred HcCcEEEEecC-CEEEEEEeCCHHHHHHHHHHhccC
Q 011491 419 IFRARAVDVSD-HTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 419 ifrakIVDvs~-~si~iE~TG~~~Kidafi~lL~py 453 (484)
++.+++.+.+. --++||+..+++|+++|+..|+++
T Consensus 58 ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~l 93 (127)
T 2dcl_A 58 VHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPM 93 (127)
T ss_dssp ----------CCCEEEEEEEEEHHHHHHHHHHHTTT
T ss_pred EecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 45667777774 469999999999999999999986
No 148
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=33.23 E-value=90 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 26 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 26 GQRIKQIRHESGASI-KIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp GHHHHHHHHHHCCEE-EECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCEE-EEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 457899999999994 56553 4689999999999988877654
No 149
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=32.93 E-value=69 Score=25.84 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+..+|+ |++.++ .-++.++|+++.++...+++..
T Consensus 34 G~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 34 GEQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp SHHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 34788999999998 567664 3688999999999888777764
No 150
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=31.41 E-value=1e+02 Score=23.50 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 22 G~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 22 GKTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp THHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 346889999999996 67654 4788999999999988887754
No 151
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=31.29 E-value=1e+02 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCcEEEEecCC-----EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH-----TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~-----si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+ |++.+. .-++.++|+++.++...+++..
T Consensus 26 ~~Ik~I~~~sga~-I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ 71 (82)
T 1wvn_A 26 ANINEIRQMSGAQ-IKIANPVEGSSGRQVTITGSAASISLAQYLINA 71 (82)
T ss_dssp HHHHHHHHHHCCE-EEECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCE-EEEecCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 4688899999999 567662 6689999999999988887765
No 152
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=30.62 E-value=1e+02 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCcEEEEecCC-----EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH-----TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~-----si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+ |++.++ .-++.++|+++.++...++++.
T Consensus 27 ~~Ik~I~~~tga~-I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 27 QRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp HHHHHHHHHHCCE-EEECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCE-EEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 5788899999999 567653 3689999999999988777653
No 153
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=30.46 E-value=11 Score=34.28 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=0.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 011491 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH 377 (484)
Q Consensus 317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~ 377 (484)
+.+.+.+.||.|.+++.++.+.|.++-++...+.++ +..++++.+.+ ..+..+++.|+
T Consensus 141 l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~-~~~~v~~~v~~--~~~~~i~~~le 198 (213)
T 1vr9_A 141 FSVLLEDKPGELRKVVDALALSNINILSVITTRSGD-GKREVLIKVDA--VDEGTLIKLFE 198 (213)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCC-CEEEEEEEEcc--CCHHHHHHHHH
Confidence 445566889999999999999999998876555444 56666666764 35777888775
No 154
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=29.58 E-value=92 Score=24.87 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCcEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEH-----ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~-----sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+..+|+ |++.+. .-++.++|+++.++...+++..
T Consensus 33 G~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 33 GQRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp GHHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 34688899999998 567653 5789999999999888777654
No 155
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=29.55 E-value=46 Score=28.98 Aligned_cols=126 Identities=10% Similarity=0.193 Sum_probs=68.0
Q ss_pred EEEEEEcCchhHHHHHHHHHhccCceeee--------EeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491 81 TISVFVGDESGIINRIAGVFARRGYNIES--------LAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVED 150 (484)
Q Consensus 81 tISilVeN~pGVL~RIagLFsRRGyNIeS--------LtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~d 150 (484)
++.+++.+. .+..+..+.|-||.. +.+.....++ -=.+++.|+.+.+......+..++.-.. .
T Consensus 4 ~~~~~ip~~-----~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~--~ 76 (163)
T 3krm_A 4 MVQVFIPAQ-----AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEEN--F 76 (163)
T ss_dssp EEEEEEEGG-----GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT--S
T ss_pred EEEEEechh-----hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc--c
Confidence 445555443 345555666666543 3344332222 1234556777666666655544332110 1
Q ss_pred cCCchhhhhhheeEEEeCCC------CCHHHHHHHHHhcCcEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 011491 151 ISNEPHVERELMLIKLNGDT------STWPEIMWLVDIFRAKVVDISEHA-------LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 151 lt~~~~V~RELaLiKV~~~~------~~r~eI~~l~~~FrAkIVDvs~~s-------l~iE~TG~~~KIdafi~~L~~ 215 (484)
..+.... ...+-+.|.... ..-..|.+|.+.++|+| ++.++. -++.++|+++.+++..+++..
T Consensus 77 ~~~~~~~-~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 77 FGPKEEV-KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SCSSCCC-CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred cccccCC-ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 1111100 011123333321 23446889999999998 676654 389999999999988877653
No 156
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=29.15 E-value=73 Score=26.72 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCcEEEEecCCE-----EEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEHA-----LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~s-----l~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|.+.++|+| ++.++. -+|.++|+++.++...++++.
T Consensus 30 G~~Ik~I~~~TGakI-~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 30 GEMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp THHHHHHHHHHTCEE-EECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCcEE-EEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 457889999999985 555432 478999999999998888765
No 157
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=29.14 E-value=2.9e+02 Score=24.12 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCcee--------eeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE-
Q 011491 315 HTLSMLVNNTPGVLNIVTGVISRRGYNI--------QSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV- 385 (484)
Q Consensus 315 htLsilVeN~pGVL~RVtglFsRRGyNI--------eSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V- 385 (484)
+++.++|.+ +.+..+.-+.|-|| -.+.+.+.+...-.|+. .+.|+.+.+++..+.+.+++.-..-
T Consensus 3 ~~~~~~vp~-----~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v-~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 3 HMIDVPIPR-----FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIA-QITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp EEEEEEEEH-----HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEE-EEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECh-----hheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEE-EEEeCHHHHHHHHHHHHHHHHhcccC
Q ss_pred ----------------eccCCchhHHHhhheeEEecCccch------HHHHHHHHHcCcEEEEecCCE--------EEEE
Q 011491 386 ----------------QDITHLPFAERELILIKIAVNTAAR------RDVLDIAKIFRARAVDVSDHT--------ITLE 435 (484)
Q Consensus 386 ----------------~dlt~~~~V~REL~LIKV~~~~~~r------~eI~~la~ifrakIVDvs~~s--------i~iE 435 (484)
.++...+.-.....-+.|..+..-+ ..|.+|-+.++|+ |++.++. =++.
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~-I~i~~~~~~~~~~~~~~v~ 155 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGAR-IELQRNPPPNADPNMKLFT 155 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCE-EEEECCCTTTSCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCE-EEECCCCCCCCCCCceEEE
Q ss_pred EeCCHHHHHHHHHHhc
Q 011491 436 LTGDLNKIIALQRLLE 451 (484)
Q Consensus 436 ~TG~~~Kidafi~lL~ 451 (484)
++|+++.++...++++
T Consensus 156 I~G~~~~v~~A~~~I~ 171 (174)
T 1j4w_A 156 IRGTPQQIDYARQLIE 171 (174)
T ss_dssp EECCHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHH
No 158
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=29.07 E-value=1.1e+02 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCcEEEEecCC-----EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH-----TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~-----si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+.++|+ |++.++ .-++.++|+++.++...++++.
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 35 EQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp HHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999998 677765 3688999999999887777654
No 159
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=28.72 E-value=86 Score=24.16 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhc
Q 011491 174 PEIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLS 214 (484)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~s---l~iE~TG~~~KIdafi~~L~ 214 (484)
..|.+|-+..+|+| ++.++. -++.++|+++.+....+++.
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGARI-NISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCEE-EECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEE-EEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 47889999999994 777664 37999999999988777654
No 160
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=27.75 E-value=1.4e+02 Score=23.62 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 011491 174 PEIMWLVDIFRAKVVDISEH--------ALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 174 ~eI~~l~~~FrAkIVDvs~~--------sl~iE~TG~~~KIdafi~~L~~ 215 (484)
..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 46888999999996 67653 4789999999999988877754
No 161
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=27.60 E-value=89 Score=26.64 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHhcccceEEEeccCCchhHHHhhheeEEecCc---cchHH-HHHHHHHcCcEEEEecCCEEEEEE
Q 011491 365 TDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNT---AARRD-VLDIAKIFRARAVDVSDHTITLEL 436 (484)
Q Consensus 365 de~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LIKV~~~~---~~r~e-I~~la~ifrakIVDvs~~si~iE~ 436 (484)
++..+++|-.+|++ || ||||++.. .++.+ ..+||+..+|.+|++-..++++=-
T Consensus 29 Te~vi~ei~~aL~~-----------------hE--LIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR 85 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------RE--LIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYR 85 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SS--EEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CC--cEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEe
Confidence 45666666666664 55 56666543 33433 556889999999999988888743
No 162
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=27.24 E-value=1.3e+02 Score=22.86 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCcEEEEecCC--------EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH--------TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~--------si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+| ++.++ .-++.++|+++.+....+++..
T Consensus 23 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 46788999999995 77764 4788999999999988877654
No 163
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=27.18 E-value=1.1e+02 Score=24.49 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCcEEEEecCC-----EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH-----TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~-----si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+ |++.+. .-++.++|+++.++...++++.
T Consensus 34 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 34 QRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp HHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 4678899999998 677763 5789999999999887777653
No 164
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=26.27 E-value=1e+02 Score=23.67 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCcEEEEecCCE---EEEEEeCCHHHHHHHHHHhc
Q 011491 411 RDVLDIAKIFRARAVDVSDHT---ITLELTGDLNKIIALQRLLE 451 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~s---i~iE~TG~~~Kidafi~lL~ 451 (484)
..|.+|-+.++|+ |++.++. -++.++|+++.+....+++.
T Consensus 25 ~~Ik~I~~~tga~-I~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGAR-INISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCE-EEECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCE-EEEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 4688899999999 5887764 37999999999988777654
No 165
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=25.27 E-value=3e+02 Score=22.98 Aligned_cols=51 Identities=31% Similarity=0.323 Sum_probs=35.5
Q ss_pred ChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEEeCCCCCH---HH-HHHHHHhcCcEEEEecCCEEEE
Q 011491 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTW---PE-IMWLVDIFRAKVVDISEHALTI 197 (484)
Q Consensus 128 de~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV~~~~~~r---~e-I~~l~~~FrAkIVDvs~~sl~i 197 (484)
++..+++|-.+|++ || ||||++....+ .+ ..+|++.-+|.+|++-...+++
T Consensus 30 T~~vi~ei~~aL~~-----------------~E--LIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 30 TEGVLAEIENALNH-----------------HE--LIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp CHHHHHHHHHHHHH-----------------HS--EEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CC--eEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 46667777777743 56 56666544333 33 5668999999999998888776
No 166
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=25.08 E-value=70 Score=24.62 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=31.7
Q ss_pred HHHHHHHhcCcEEEEecCCE---EEEEEeCChhHHHHHHHHhcc
Q 011491 175 EIMWLVDIFRAKVVDISEHA---LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 175 eI~~l~~~FrAkIVDvs~~s---l~iE~TG~~~KIdafi~~L~~ 215 (484)
.|.+|.+.++++ +++.++. =.+.++|+++.++...+.+..
T Consensus 26 ~I~~I~e~tg~~-I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 26 NINRIKDQYKVS-VRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp HHHHHHHHTCCE-EECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCE-EEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 588999999999 5776654 267788999999988887754
No 167
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=24.87 E-value=1.6e+02 Score=23.14 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCcEEEEecCC--------EEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDH--------TITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~--------si~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 46788999999995 78764 4789999999999888777654
No 168
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.96 E-value=1.3e+02 Score=25.14 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCcEEEEecCCE-----EEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSDHT-----ITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~~s-----i~iE~TG~~~Kidafi~lL~p 452 (484)
..|.+|-+.++|+ |++.++. -++.++|+++.+++..++++.
T Consensus 31 ~~Ik~I~~~TGak-I~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 31 EMIKKIQNDAGVR-IQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp HHHHHHHHHHTCE-EEECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcE-EEEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999998 5665432 478999999999988888764
No 169
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=23.81 E-value=1.3e+02 Score=25.58 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEEeCCCCC---HH-HHHHHHHhcCcEEEEecCCEEEEEE
Q 011491 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST---WP-EIMWLVDIFRAKVVDISEHALTIEV 199 (484)
Q Consensus 128 de~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV~~~~~~---r~-eI~~l~~~FrAkIVDvs~~sl~iE~ 199 (484)
++..+++|-.+|++ ||| |||++.... +. -..+|++.-+|.+|++-...+++=-
T Consensus 29 Te~vi~ei~~aL~~-----------------hEL--IKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR 85 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------REL--IKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYR 85 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SSE--EEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCc--EEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEe
Confidence 46777777777754 664 565554333 33 3567889999999999888887743
No 170
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=22.39 E-value=1.2e+02 Score=24.91 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCcEEEEecC-------CEEEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISE-------HALTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~-------~sl~iE~TG~~~KIdafi~~L~~ 215 (484)
-..|.+|-+.++|+| ++.+ +.=+|.++|+++.++...+++..
T Consensus 34 G~~Ik~I~~~tga~I-~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 34 GETIRSICKASGAKI-TCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp SHHHHHHHHHHCCEE-EECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEE-EEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 346889999999995 7775 46789999999999888777764
No 171
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=21.69 E-value=81 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHHHHcCcEEEEecCCE---EEEEEeCCHHHHHHHHHHhcc
Q 011491 412 DVLDIAKIFRARAVDVSDHT---ITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 412 eI~~la~ifrakIVDvs~~s---i~iE~TG~~~Kidafi~lL~p 452 (484)
.|.+|-+.++++ |++.++. =.+.++|.++.+++..++++.
T Consensus 26 ~I~~I~e~tg~~-I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 26 NINRIKDQYKVS-VRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp HHHHHHHHTCCE-EECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCE-EEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 577899999999 5777654 267788999999988887754
No 172
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=21.06 E-value=72 Score=24.62 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=43.0
Q ss_pred heeEEecCccchHHHHHHHHHcCcEEEEe-cCCEEEEEEeCCHHHHHHHHHHhccC
Q 011491 399 ILIKIAVNTAARRDVLDIAKIFRARAVDV-SDHTITLELTGDLNKIIALQRLLEPY 453 (484)
Q Consensus 399 ~LIKV~~~~~~r~eI~~la~ifrakIVDv-s~~si~iE~TG~~~Kidafi~lL~py 453 (484)
.=+++.++-..-..|..+++.+++.|+|. -.+.+++.+.=..+++++|.+.|...
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~ 63 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADF 63 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHH
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHH
Confidence 34677888777889999999999999986 24458889888999988888888653
No 173
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=20.90 E-value=3.7e+02 Score=22.42 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=25.9
Q ss_pred eeEEecCcc---chHH-HHHHHHHcCcEEEEecCCEEEE
Q 011491 400 LIKIAVNTA---ARRD-VLDIAKIFRARAVDVSDHTITL 434 (484)
Q Consensus 400 LIKV~~~~~---~r~e-I~~la~ifrakIVDvs~~si~i 434 (484)
||||++... ++.+ ..+|++..+|.+|++-.+++++
T Consensus 46 LIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 46 LIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 577766443 3434 5558999999999999888876
No 174
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=20.86 E-value=1.1e+02 Score=24.12 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCcEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 011491 173 WPEIMWLVDIFRAKVVDISEHA-------LTIEVTGDPGKMVAVQRNLSK 215 (484)
Q Consensus 173 r~eI~~l~~~FrAkIVDvs~~s-------l~iE~TG~~~KIdafi~~L~~ 215 (484)
-.-|.+|-+.++|+| ++.++. -.+.++|+++.++...++++.
T Consensus 33 G~~Ik~I~~~tga~I-~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~ 81 (85)
T 2opv_A 33 GETIKQLQERAGVKM-ILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMD 81 (85)
T ss_dssp THHHHHHHHHHTCEE-EECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEE-EEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 346788999999996 444433 247889999999988877654
No 175
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=20.71 E-value=2.6e+02 Score=29.44 Aligned_cols=128 Identities=10% Similarity=0.124 Sum_probs=85.0
Q ss_pred EEEEEEEEcCch--hHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491 79 RHTISVFVGDES--GIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP 155 (484)
Q Consensus 79 khtISilVeN~p--GVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~~ 155 (484)
+-.|.+.+-|.. .-+.....-|..-.| + -+|+.-..+.+.+... +|.+.+..+++.+.+-+||==+-|-.+.+
T Consensus 91 ~p~ia~~V~D~~~e~~~~~~~~~~~~~~~--~--rvg~~~~~D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~IDS~dpe 166 (446)
T 4djd_C 91 ETAIAIQVSDNLSSEELKAKVEAINGLNF--D--RVGQHYTIQAIAIRHDADDPAAFKAAVASVAAATQLNLVLMADDPD 166 (446)
T ss_dssp CCEEEEEEETTSCHHHHHHHHHHHTTCCE--E--ETTEEECCCEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHH--H--HHHHhccCcEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEecCCHH
Confidence 457788887762 223222333433212 1 1454444556777654 67788999999999989976666655555
Q ss_pred hhhhhheeEE-----E-eCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcE
Q 011491 156 HVERELMLIK-----L-NGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIK 219 (484)
Q Consensus 156 ~V~RELaLiK-----V-~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIl 219 (484)
..+.=|-..+ | .++.++..++..++..|++.|+-.++ +-+.+..+++.+..+||.
T Consensus 167 vleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pVi~~~~---------dl~~lkelv~~a~~~GI~ 227 (446)
T 4djd_C 167 VLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPLAVYGN---------GLEELAELVDKIVALGHK 227 (446)
T ss_dssp HHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCEEEECS---------SHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcEEEEec---------cHHHHHHHHHHHHHCCCC
Confidence 5444333221 1 23456777999999999999999876 677888899999999994
No 176
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=20.06 E-value=1.4e+02 Score=24.46 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCcEEEEecC-------CEEEEEEeCCHHHHHHHHHHhcc
Q 011491 411 RDVLDIAKIFRARAVDVSD-------HTITLELTGDLNKIIALQRLLEP 452 (484)
Q Consensus 411 ~eI~~la~ifrakIVDvs~-------~si~iE~TG~~~Kidafi~lL~p 452 (484)
.-|.+|-+.++|+ |+|.+ +.=++.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 35 ETIRSICKASGAK-ITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp HHHHHHHHHHCCE-EEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCE-EEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 4678899999999 57876 46789999999998887777654
Done!